<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:07:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242172" ref_strand="+" ref_description="SGN-E242172 [cLED-37-C23]">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="3976" stop="2982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3676" g_stop="3282" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E242172" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3676" e_stop="3282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAATACTGTTGGATCAAAAGTGCAGAAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGTTTTTCAAGTGGTTGCAATGATCGAGAAGTTTCCTCCTTCGTGGAATGATTTCAAGTATTATCTAAAGCAAAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCAGCTCAAGATTGTGGAAGATAATAAAAACACCGAAAAGAAGTAGCGTAAGAGTTCAACAATCATTAGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACAGGCAGAAGTTAGAACAGTCCAAGAAGAAATTCAAAGGCAACTGTTACAATTGTGGCAAGGCTGGTCATAGGTCTTCTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242208" ref_strand="+" ref_description="SGN-E242208 [cLED-37-E10]">
      <seq>gtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgggattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcccgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="3972" stop="3010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3672" g_stop="3310" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E242208" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3672" e_stop="3310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATACTGTTGGATCAAAAGTGCAGAAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGTTTTTCAAGTGGTTGCAATGATCGAGAAGTTTCCTCCTTCGTGGAATGATTTCAAGTATTATCTAAAGCAAAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCAGCTCAAGATTGTGGAAGATAATAAAAACACCGAAAAGAAGTAGCGTAAGAGTTCAACAATCATTAGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACAGGCAGAAGTTAGAACAGTCCAAGAAGAAATTCAAAGGCAACTGTTACAATT</genome_strand>
        <mrna_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGGGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCCCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="31425" stop="32396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31725" g_stop="32061" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31725" e_stop="32061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGACCAACTCAAAATAGAAAACAGTATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCCCAATACCATACTCATTTTGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTAAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTAACACTCCGATCCCCTAAATCTACGTGTC-GGTTCATGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349726" ref_strand="-" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>ttatgttcattagattgagtatataacatctttcaagattcattgtctttatttctcttgtgtcggtacgtgacattccgctccntcatattcattaatcttcttgtgtcggtacgtgatactctgatcccctaaatctacgtgtcggaacgtgacactccgatcccctaaatctacgtgtcggttcgtgacacctgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaatctatgtgttggttcgtgacacctgatcccttaatctacgtgtcggtttgtgacacccgatcccctaattctacgtgtcagttcgtgacacccgatcccctaatctcattctatcaattcatcaagccttctcccttaccaaggcatcatcaatctcattactttagttcatcaagccttctcccttaccaaggcatcatcattaaaaagagattaggtttttacaagatttgggattcaataacttcatcatgcttatataataacaattatatagttacattcatgcaagcatacaattaagcacatagcagggtttacaatattatcaatacatatcattctctattaagagtttactacgaatatcgtaagagaaacaataacctacctccaccgaagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="31596" stop="39867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31896" g_stop="32253" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32254" i_stop="39234" i_length="6981">
            <donor d_prob="0.227" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39235" g_stop="39593" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="717" r_length="361" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E349726" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31896" e_stop="32253"/>
          <exon e_start="39235" e_stop="39593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTTCATTAGATTGAGTATATTAACATCTTTAAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTAACACTCCGATCCCCTAAATCTACGTGTCGGTTCATGACAC-CCGATCCCCTAAATCTACGTGTCAGTTCGTGACACCCGATCCCTTAATTCTACGTGTCGGTTTGTGACACCCGATCCCTTAATTCTACGTGTCGGTTCGTGACACCCGATTTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCAGTTCATGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATCTCATTCTATCAACTCATCAAGCCTTCTCCCTTACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATCATCAAAAAGAGATTAGGTTTTTATCAAGATTTGGGATTCAATAACTTCATCATGCTTAATATAATCATAATTATATAATCACGTTCATGCATGCATACAATTAAGCATATAGCAGGGTTTACAATACTATTAATACATATCATTCTCTATTAAGAGTTTACTACGAAAGCATGAAAACCATAACCTACCTCCACCGAAGACTAGTGATCAAGCAAGCAAATTCCCAAAGCTTTGTTCTTCTTTCTTCCTCGTTCGACTCTCCCTCTCTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGGTGACAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCTCTAACTTTATAATTAAAGTAGAAATAGTCCAAAACGTCCCTTAAAATGTGTAAAGAAATTCGACCCAGACTGGGATTTCGCAGTCTGTGACGGCCCGTCGCGCCTGCGACGGTCCGTCCTGTTGCCCGTCACAGAGTTCAGAGACTCAATTTCTCTGAAGAGTATGTGACGGTCCGTCACACCTGTGATGGTCCGTCCTGCCATTCTGTCACGAAGTTCAGAGAGTCAATTTTTTGTACCCAATTTTAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCTGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTCGCCTCAGCCTGTTCTTCTAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACAATAGATACCAATTTACCCATCGTTCGTCCCCGAACGATCACAAGAAGGAAAACAAGGGAGAAAAGGAGTACCTGAATCTGTAAATAGATGTGGGTATCTTTCTCGCATATCTGCCTCCTTCTCCCAAGTTGCTTCTTCAACCGGCCGATTCTTCCATTGCACCTTGATGGATGCAATCTCCCTTGATCTCAACTTGCGAATTTCCCTATCTAGAATTGCAACAGGTTCCTCCTCATAAGACAAATTCTCGTCAAGCAGAACTGAATCCCAACGGATAATATAGTTTCCATCCCTATGGTATCTTTTCAACATAGACACATGGAATACCGGATGCACTCCGGACAGCCCTGGAGTCAAGGCTAACTCATAAGACACCTCCCCTATGCGCTTCAGAACCTCGAAGGGACCAATATACCTTGGGCTTAGTTTACCCCTTTTTCCAAACCGCATCACCCCTTTCATTGGCGAAACCTTCAACAAGACTTGTTCACCCTCCATAAACTCCAAGTCTCTAACCTTCCGATCTGCATACTCCTTCTGTCTACTTTGCACCGCTAGAAGCTTTTCTTGAATAGATTTCACTTTCTCTATTGAATCCCGCAAAAGATTAGTACCCCAAGGTCTAACCTCGAATGCATCAAACCAACCAATGGGGGACCTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCTCAATGGCCACCAAACTTTATCACACATGCGCGAAGCATATCCTCCAACACTTGAATCGTTCTCTCAGACTGACCATCGGTCTGAGGATGGAACGCAGTACTAAGGTCCAACCTAGTACCCAATTCCTCATGCAATGTCTTCCAAAATTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAATCGAACGATTTCTGAGATATAGATCTTGGCTAACTTCTCGGCATTGTAAGTCACCTTAACCGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATGGAATCAAACTTTCCCAATGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATCCTTTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTCTGGTGTTCATACTTTACTTGCTGACAGTTTGGACATTTGGCAATAAAATCCACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCAAATACTTTGAACTATGAGCCTCTGTAAGAATGGTGTTGATCAAATCATCAACAAAGGGTACACACACCCTTCCCTTAATCCTCAAAACACCTTCCTCATCGATCGTCACTTCTTTAGCCTCTCCTTGCAACACTTTATCTCGGATCCAGATCAATTTCTCATCATTAAACTGCTTTCCCTTAATCTTGTCAAGGAAGGAAGATCTTGCCTCCACACAAGCTAAAAATCCTCCCTTCTCATTTACTTCTAATCTCATAAGGTCGTTAGCCAGAATCTGAACTTCTCTAGCCAATGGGCGTCTAGAAGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCGCCTTTCTACTTAAAGCATCCGCTACAACATTCGCCTTCCCCGGATGATACAAAATAGTGATGTCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAGTTCAAGTCTTTCTGAGTAAAGACATACTATAGGCTACGATGATCTGTATAGACCTCACACTTAACCCCATATAAATAGTGTCTCCATTGCTTTAATGCAAAGACTACCGCAGCCAATTCCAAATCATGAGTTGGATAGTTACGTTCATGCACTTTTAATTGTCTTGAAGCATAAGCAATCACACTCTTCTCTTGCATTAGCACTGCACCCAAACCCGAATAGAATGCATCACAATAGACAATGAAATTCTTACCTTCCATGGCAAGGTGAGAATTGGTGCAGTAGTCAATAGAGTCTTGAGCTTCTGAAAGCTTTCCTCACACTCATCCGACCATACAAATGGAACATTTTGCTTAGTCAAGTTCGTCAGTTGGGAAGCAATAGAAGAGAATCCCTTGACAAATCTGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAATCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACACATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAAAGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGATCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTTACCCACCGAAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCTGAGGTCTCCGCTTCCGACCGCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGACCGCTTTGGTGACCACCATTACCTCGACCACCGCGTCCTCCAGAATAATGGTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCTCCACATCCATAACACTCTATAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATAGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAATTCTCCTCCCTTTCGTAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTTCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTTCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGGCTGACATCCTACCTTTCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAACATGTGACCGCCACCATATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGGAAACCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGTCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGCTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTCCTCGAGCTACAGCCCCAGTGGCTGGCTCAGACGCACCCTGTCCCGCTGGTGCTGGTGTTGGTGTTGGCGTACTCGTTGCTCTAGTTCTAACCATCTGCGAAATAGAGTGAAGATGATCAGATACCAATTTGTATCACCTAGATACCAATTGGACCCAAGTAATAGCACGAAAGAAAGAAAGAAGAATGGAATTTTCCTAAAGTCTTATAGCCTCTCAAAGAAAAGTAAAGGCGTCTCCTTACCGTTCCTTAAGACTCTACCAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGTTCTGATACCAAGTTTATCACGACCCAAAATCGGACCGCGACTAGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATATCAACATAAAGTAATGCGGAAGACTTAAAACTCATTAACAAAATCAATAATCAACTTCTATAACTCAAAACTTATCATTATCCCCAAAATCTGGAAGTCATCACCACAAGAACATCTATGATCAAATTACTAAACTAAGAGTATTCTAAGAAGCTAAAAAAAATACATAAAAGCTAGTCCATGCCGGGACTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTAACCCTGAAGATCCGATGTGACGAAGACTGACTAGAGTTACTGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACAGGGGTACTGAGTAGATATCATTGGCCAACTCAAAATAGAAAACAGTATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCCCAATACCCTACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATATTTAAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTTGTGACACCCGATCCCCTAAATCTACGTGTCGATTTGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACTCGATCCCCTAATTCTACGTGTCAGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATCTCATTCTATCAACTCATCAAGCCTTCTCCCTTACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATCATCAAAAAGAGATTAGGTTTTTATCAAGATTTGGGATTCAATAACTTCATCATGCTTAATATAATCACAATTATATAATCACGTTCATGCATGCATACAATTAAGCACATAGCAGGGTTTACAATACTATCAATACATATCATTCTCTATTAAGAGTTTACTACGAA-A--GCATGA-AAACCATAACCTACCTCCACCGAAGACTA</genome_strand>
        <mrna_strand>TTATGTTCATTAGATTGAGTATA-TAACATCTTTCAAGATTCATTGTCTTTATTTCTCTTGTGTCGGTACGTGACATTCCGCTCCNTCATATTCATTAATCTTCTTGTGTCGGTACGTGATACTCTGATCCCCTAAATCTACGTGTCGGAACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCTGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAA-TCTATGTGTTGGTTCGTGACACCTGATCCCTTAA-TCTACGTGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGACACCCGATCCCCTAATTCTACGTGTCAGTTCGTGACACCCGATCCCCTAATCTCATTCTATCAATTCATCAAGCCTTCTCCCTTACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATCATTAAAAAGAGATTAGGTTTTTA-CAAGATTTGGGATTCAATAACTTCATCATGCTT-ATATAATAACAATTATATAGTTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCTCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACAATAACCTACCTCCACCGAAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347579" ref_strand="+" ref_description="SGN-E347579 [cTOF-26-K4]">
      <seq>aataaagaaaatagaaagaacaagagagagaggaagaatcgaacgagaagggagaaacaaagcttggagaaaaatttgcttgcttgatcactaatcttcggtggaggtaggttatggttttcatgctttcatagtaaactcttaatagagaatgatatgtattggtagtattgtaaaccctgctatatgcttaattgtatgcatgcatgaacgtgattatataattgtgattatattaagcatgatgaagttattgaatcccaaatcttgataaaaatctaatctcttattaatgatgatgccttggtatagaagaaggcttgatgaataaaagtaatgggattgatgatgccttggtatagagaaggcctgatgatttacagaatgatattagtggatcggagtgtcacgtaccgacacatgcaggggatcgggtgtcacgaaccgacacgtagaattaggggatcgggtgtcacgaactggcacgtagaattaggggatcgggtgtcacgaaccggcacgtagattaggggatcaggtgtcacgaaccgacacgtagaattaggggatcgggtgtcacgaaccgacacgtagaattaggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="39984" stop="31793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32668" g_stop="32058" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E347579" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32668" e_stop="32058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGAAAATAGAAAGAACAAGAGAGAGAGGGAGAGTCGAACGAGGAAGAAAGAAGAACAAAGCTTTG-G--GAATTTGCTTGCTTGATCACTAGTCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCGTAGTAAACTCTTAATAGAGAATGATATGTATTAATAGTATTGTAAACCCTGCTATATGCTTAATTGTATGCATGCATGAACGTGATTATATAATTATGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTGATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAATGAGATTAGGGGATCGG-GTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCATGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGAAATCGGGTGTCACGAACCGACACGTAGAATTAAGGGATCGGGTGTCACAAACCGACACGTAGAATTAAGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGAT</genome_strand>
        <mrna_strand>AATAAAGAAAATAGAAAGAACAAGAGAGAGAGGAAGAATCGAACGA-GAAGGGAG-A-AACAAAGCTTGGAGAAAAATTTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATATGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAATCTAATCTCTTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATAAAAGTAATGGGATTGATGATGCCTTGGT-ATAGAGAAGGCCTGATGA-TTTACAGAATGATATTAGTGGATCGGAGTGTCACGTACCGACACAT-G---CAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGGCACGTAGAATTAGGGGATCGGGTGTCACGAACCGGCACGTAG-ATTAGGGGATCAGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="33538" stop="34315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33838" g_stop="34014" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33838" e_stop="34014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCTCAATGGCCACCAAACTTTATCACACATGCGCGAAGCATATCCTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="35018" stop="36330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35318" g_stop="36030" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35318" e_stop="36030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCTGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAATCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACACATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="35018" stop="36213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35318" g_stop="35913" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35318" e_stop="35913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCTGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAATCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACACATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="35018" stop="36143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35318" g_stop="35843" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35318" e_stop="35843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCTGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAATCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACACATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="35089" stop="36367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35389" g_stop="36068" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35389" e_stop="36068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAATCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACACATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="35089" stop="36047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35389" g_stop="35747" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35389" e_stop="35747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAATCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACACATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="35540" stop="36796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35838" g_stop="36496" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35838" e_stop="36496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAAAGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGATCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="37634" stop="35626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37334" g_stop="37162" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37161" i_stop="36418" i_length="744">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36417" g_stop="35890" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37334" e_stop="37162"/>
          <exon e_start="36417" e_stop="35890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGTAGGATGTCAGCCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGAAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGAAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTACGAAAGGGAGGAGAATTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCTATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCCATGCTTGACTCTATAGAGTGTTATGGATGTGGAGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGACCATTATTCTGGAGGACGCGGTGGTCGAGGTAATGGTGGTCACCAAAGCGGTCGGGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAAACAAACGAAAGGGCCCATTGTTATGCTTTCCCTGGGCGGTCGGAAGCGGAGACCTCAGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTTCGGTGGGTAAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGATCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTAGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCTTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGAGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAGATCG--G-CAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="35607" stop="36967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35907" g_stop="36668" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35907" e_stop="36668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAAAGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGATCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTTACCCACCGAAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCTGAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="35607" stop="36867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35907" g_stop="36567" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35907" e_stop="36567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAAAGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGATCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTTACCCACCGAAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="36010" stop="36936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36310" g_stop="36640" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36310" e_stop="36640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGATCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTTACCCACCGAAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="36217" stop="37375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36517" g_stop="37075" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36517" e_stop="37075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCTGAGGTCTCCGCTTCCGACCGCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGACCGCTTTGGTGACCACCATTACCTCGACCACCGCGTCCTCCAGAATAATGGTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCTCCACATCCATAACACTCTATAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATAGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAATTCTCC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="36301" stop="37690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36601" g_stop="37390" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36601" e_stop="37390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCTGAGGTCTCCGCTTCCGACCGCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGACCGCTTTGGTGACCACCATTACCTCGACCACCGCGTCCTCCAGAATAATGGTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCTCCACATCCATAACACTCTATAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATAGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAATTCTCCTCCCTTTCGTAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTTCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTTCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGGCTGACATCCTACCTTTCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="36377" stop="37674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36677" g_stop="37374" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36677" e_stop="37374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGACCGCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGACCGCTTTGGTGACCACCATTACCTCGACCACCGCGTCCTCCAGAATAATGGTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCTCCACATCCATAACACTCTATAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATAGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAATTCTCCTCCCTTTCGTAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTTCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTTCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGGCTGACATCCTACCTTTCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="36939" stop="38256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37238" g_stop="37952" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37238" e_stop="37952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGGCTGACATCCTACCTTTCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAACATGTGACCGCCACCATATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGGAAACCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGTCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGCTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGAT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="36941" stop="38204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37241" g_stop="37904" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37241" e_stop="37904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGGCTGACATCCTACCTTTCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAACATGTGACCGCCACCATATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGGAAACCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGTCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGCTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCA-ATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="38260" stop="37108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37960" g_stop="37408" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37960" e_stop="37408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAG-CCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTGTCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGACTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGGTTTCCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATATGGTGGCGGTCACATGTTGAGTGTCAACCAACGGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="37296" stop="38328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37596" g_stop="38027" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37596" e_stop="38027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGTCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGCTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGAT-GGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="39436" stop="31273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39136" g_stop="38659" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39136" e_stop="38659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAATAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTTAAATATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTAGGGTATTGGGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATACTGTTTTCTATTTTGAGTTGGCCAATGATATCTACTCAGTACCCCTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTA-TTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGTCAGTCTTCGTCACATCGGATCTTCAGGGTTAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="39437" stop="38602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39137" g_stop="38900" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39137" e_stop="38900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAATAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTTAAATATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTAGGGTATTGGGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTGCTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="39893" stop="31878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39593" g_stop="39193" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39593" e_stop="39193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCT-TTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTGATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGAGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727114" ref_strand="+" ref_description="SGN-E727114 [LA13DB02]">
      <seq>tattttcggagctggataagtcttatcattagactgctcctctctgttgccaaacattccgattagatgacaattaccgtgtacacccctgcgcatgttaccaccagcgtcttaaattcccggctcctccgctctccgccacgacggacattgtcgacggcgagatatcaccgcaatttttgcttaacttgcgtgttaataccggagacaaggcgggaaagcagacgattggtcaacatagcccttggggtcttgcttcaatggctagctctacctaacgatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattagagaaatccttagagattgatcaacctaaatatggagattgccggaatatattgcgttctggtcctgcatcatctcttcgtgtcaatattcgagcagtagcacaatacgcagctgatggtggcaatggtaaattagctttcagtgatgttgatgagtgtctgagtgcattggaaggacttgactcgttgcttttgcgtgcatcaagaaaggatccaggggcctcaattgactcaatgaaggcacaaattgctactgccttaaatgcattggacagtcttcttaaaactgtcccaactgatgtgcttgaaaagggaaagtctgtagctgattcatatttttttgctggcgaggaagaagtagcacctgagagactggaccctgagctgaagcaactggaatctatactgtaaaaaattacaaaagcctctttcttgatcagggtcatgtttttgcattgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41461" stop="62856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41761" g_stop="42040" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="320" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="391" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60647" g_stop="60741" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="486" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61522" g_stop="61589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="554" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61590" i_stop="62057" i_length="468">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62058" g_stop="62168" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="665" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62370" g_stop="62556" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="852" r_length="187" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E727114" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41761" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="60647" e_stop="60741"/>
          <exon e_start="61522" e_stop="61589"/>
          <exon e_start="62058" e_stop="62168"/>
          <exon e_start="62370" e_stop="62556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCGGAGCTGGATAAGTCTTATCATTAGACTGCTCCTCTCTGTTGCCAAACATTCCGATTAGATGACAATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTCTAACGAACCAACGCCATAGGTCGTAGGAAGAAAACATTCGGTTTCATACTACAGTGCCCCATAACCAGATCCATATCAGGGGACCATAACATCATGCTGCAATCAGTGTGTCTATTTAGATCGAGTATTTCAATGATCTTTAAAGCAATACAGAGATATACTAGATTTAAAGGAGTAACAATGGATAGACACCCGAAGTTGGCACCACGGTCAGATAGACACTTTAAATGTGCCAGTGATCATTAGACACCTTTTCTTGATAGAAATTTGTATCATGAACATCTATCTGCGAGATCACCCGCTTGAGACTCACTCTTTGCTGATATCAGATGGTCAAATGAAATAATGACATCTGTAATCTATTTTTTTTAATAAAAATAGAATTAGAATAACTTATAAAATACAAATTTTATTTATTTACCTATACCATAAGATGGTAGATTTCCTAGGATCAATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACTTTATCAAAAAAAAAAAAACTATACTATAAGATGGAGTTTACATGCCAAAGCAGGCAGTGGGTCAACATGTCTACTTTGGCATGTAAGGTAGTTAGGTGATTTTAAATAAAATTAAATAACATGATTGGCTTAAAAACAAGTTAGAAACTTAAATGATAATGTCACTAAAACACAGGTGGTTAGAGAATCTTGAAAAAGGTAACGTTTGGCAGCTACTGAGATGCATTTGGCGGAGCTCAAATTCATTTAGGTGATTTCAAAAAAATTCTTGAGTTATTTGTTTGTATTTTTTTTAATTTGTTATATATTTGAAAATTGTGTATTATAAGAGGGAGTTTGCATGCCAAAGCAGGCAGCAGGTCAACATGTCTTCTTTGACATGTAAAGTTAGCTGGGTTATTTTAAATAAGATTTAATAACATGACTGGCTATAAAACAAGGTAGAAACTTAAATTACAATGACACTAAAACACATGTGGTTACATAATATTGAAAGGGGTAACTTTTGGCAGGTACTGAGACGCATTTGGTGGAGCTTAAATCCATTCAGGTGTTCTTAAAAGAATTCTTGACTTATTTGTTTGTATTTTTTTAATTAGCTAAATATTTAAAAATTTTCATAAAAAATATCATTAATCAGAATAATTAGCAACTTATAATATTTAAAAGACAAAAAATCGAATTGACTCTCGAATTCTATTAGTGCCACATAAATTGGAGAAGAGGAAGTAACATGTATTATCTGAAAATTAAGCTAAAAGTACTATCAATCTCAATAATTAATAATTCAAAATATTTAAAAATCATATAACAATTTAGTTGACTCTCCTAATTCCATCCATGCAGTATAAAATTGAGATAAATAGAGTAACACATATTGAGCATGTGTTTGCACGGGCTCTCCAGTAAATATGAGAAAAGCACTCTGTTCCTCTAATTTCTTTCATCAAATGTTTCAGAACTGAACCTCCGATCCCCCCCCCCCCCCCCTTTTTTTTTTTTAAGTTGTATTCTTCAGCATTAAGGTATGCTGGCTACCTCCAAAAAATTACAAGCTAAAACCATAATTACATTGATCCTAGGAAATCTACCAACTGTTCTGCTACTTCTATACCTTCTTCTTTACACCAAAAAATCAACATGTTAATGCGATTTTCTTTAACTTTCTGCATAGTGTTAGTAATATTCTCATGACACCTAAGATCTCTTTCTCTCCAAATAGTCCACCAGACACAAGCTGGTACTATAGACCACCATTTGTTTTATGTCTTGCTCCCCCCCCCCCCCCCCCTCATCCAGCAGCTCAAAAGATCAGCAGTATGTTCTGGCATCACCCAAGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGAACAGTAACCCTACAGTGTAGAAATAAGTGGTTGTTCGTTTCTTCCTTCTCATGACAAAAAAAACATTTGGAGACAATCTGGAAGCCTCTTTTTCTGAGTTTCTCCTGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAACATTTTACCCTGGTTGGAGTGTTGCCCTCCCATATTTGTTTCCATGGACCATGAATTCCCCCAGAGTGAGTCATGACCTCTCTCCTATACAGTCTACGTACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCCGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCGTTTAGATTTCTCCTGAAGGTGAGGTTCCATCCCTGACGGGACCAAATCTCAGAAATTTTAGCCTCAGGATTGGTGCAGAACGAGAAGAGATCAGGGAAAACCGTGTTTAGACAGTCTTGTCCAATCCACTTGTCCCTCCCAAAAAATACTTTGTTGCCCTCTCCCACCTTGACCACCAAATTCTTCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACCCCATATGTGCTATCTACTACATTAGACATCCACTCCTCGGTCTGCCCATACTTGTTGAGAATTGCTCTTCTCCATAATGCCTGATCTTCAACCACAAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCCTCAGATTTTTTATGCCAAGACCCCCTGTCTTCTTGCTTAGTAAGGCTGTCTGCCATTTAACTGAAGTGTATTTTTTCTTCTTCTTTGTTCCCCGACCATAGGAAATCCCGCCTCAATTTATCCAACCTCTCTTCTACCTTTGCTGGTAGAGGGAAAGGAGACATAACATATGTAGGCAACACATCTAGGACCGAATAGATCAGAGTGACTCTTCCTCCCAGAGATAGATAGTTTGTCTTCCAATTAGCCAACCTCTTCTCTGTCTTCTCAATGATTCAATCCCAAATCACCAGCTCCTTATGATTATTCCCCAAAGGCATTCCCAACATCTGAATATTTGCCACTTCCTTGACTTGGAAGATGCTGCTTTTCGCCCAGTTCACAGCCAGTCCGGAGACGGCCTCAAAAATCACCAAAACAACTTTAATGTAACTAACTTGTTCAGCCTTTGCATCGCAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATCTGCAAATTGAGTCCTGACTGATTACTAATGTTGAAACCCTTTATCCAGTCCTTCTGATTGGCCGCTCTAATCATACTGTTAAGACCCTCCATAGCTAAAATAAAAAGGAATAGGGAGAGAGGGTCTCCCTGTCGTAAACCTCTCTCAGAAGGAAAAAAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAATCCTATCCATTTAAGCCATTTGTCTCAAACCCCATCTGCCTCAGTATATTAAGTAGAAACTCCCAATTGACATGATCATATGCCTTTTCTACATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTCGAGTCTACACATTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATGAAGGCCATTTGGTGATTATTCACTAATTTGCTTATCACTTTCTTTAATCTCTCTGCCAACAGCTTGCCAAAAACCTTGTAAACTCCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCAAAGCTCCTGTCTTTTTTGGGATTAGAGCCACATAGGTGACGTTGAGACTCTTCTCTATTTCATGTCTTTCATCAAATTGTGTCACTGCATTCATGAAGTCTGCCTTCAGTATCTCCCAGAAGTTTTGGAAAAAACTCATCGGAAAGCCATCTGGTCCGGGGGCCTTATCACTAGTACATGCTTTTATGCAATTTAAAACTTCCTCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGCTTTCTGCTCCCTGTACTTTAATTTCTGGCCTCCATTGTTCTGTTTCTCTGTAAAGATTTTGATAGTAACTGATTATGGTTCCTATAATTTCTTCTGAATCTGTTACTGTAACCCCTTCAACCATCAGCTTATCTTATCAATGGTGTTGAATCTTTTATGAGCTGTAGCCATCCTGTGAAAATACTTGGTATTTCTGTCTCCGTGTTTGAGCCAGTGTATTCTTTCGATCCCTCTCCCCTTTTTCTTTCTACACCTGTCGTTATCCTCTCCCTCTTTTTCTTTGAACACCCCCCCCCCCCTCTTCCTCTTCTTCTTCCCCACCCTTCCTCCTCTACACCTTCCACCTTTCCCTTCCCCGCTCCTCCTTCAACAAATCTGTCAAAACTGTTGCGGGTCAGAATCTCTCTCAAAATTCTGAAATGTTGTTTTTTTAAAAAAATTGTAGAATTATCAAATGTTCTCAGAGTTAATTGAGCATTCATGTTTTTTCTTAAATTTTGATATCGGAAACATTATGCACTCTTCAAATAAATTATAGATTTTAAGTTGTACTTCATGTGAAATTAGTTGGTTTTTGAGTCATTATGATTGAAGTCCATCCTGTGCACTGCTTCAGTATGTTGTAATGTTAAAGCAATTCACTCTTATTATACAAGATGTTGTCGTATCAGTTCATATTTTTTCAGTTGGTTGTGGTGGTATATGGTGGAGGTGGGCAGAGGGTGGTGGAAAAAGTTGGAGTTAGAATAGGTCACTTCCATAATGTGTTGCCTCTTCTTTTTTTTTTTTGAGAAGGTAACGATTTGTATTATAAACCAATACTTATGTAGTACTGAAAGCCCCTTTACAAAAACGTATGAAATTCTAGGAACAAAAACAGCAAGCCTAGCATGATTCTAATACTTTTCTTTTTTTTGAAATAGATGATTCTAGTACTTCAAGGATTGCTTCTGCATCTACAGGGGAACTCTTTGTACACCAAAAACATAACAAAATACAATCTGTTTTGATCATCTGTAGGGATCTATCCTCAAAGCTTCTAGCATTCCTTTCTCTCCAAATGGTCCACCAGATGCATGCTGGAATTGTCCTCCAATAATTTCTGTTCTTTGCCTCAATTCCTGCATCCTCCCATCTTGAGAGAGTGTCAACAATCGTGCTAGGCATTGGTTATCCAGATTTGTCTCCAGGCCAATTGAGGGTTAGAGGAGTCCTGATCATGACCTTGTAACCTGAGCTCACTTTGAATCTTCCTTTGTTGTGCTCTGTCCACCGTAGGCAGTCCTCCCCTTCCTTCAAACCTTGAAATGATTCCAACCTTTTAAAGAATTCAACTAATCTACAAACTTCCCATTCATTTAAATTCCTTCTGATAGTTAGATCCCAACCTTGGGGAGACCACATTTCAGCCACTGTTCTGTCTTTATGCAGTGCTAAGTCAAAGATGTTGGGGAAGATCTCTGACAAATTTTGATTACCAAGCCATCTATCTTTCCAGAATTGTGTCCTGACACCATTGTGTACTGTTATAGTAGTATGATTCCTTAGGAAAGGCCACCAGTTCCTAATTGATCTCCAAACAGTAACACCATAGGGATTGGTTGCTTCCTTGGTGACCCATGAATCCATCTCTCCGTACTTCACTTTAATCACCTTGTTCCACATTGAGTGTGGTTCATGAGCATATCTCCACAACCATTTCAGCTTTAGAGCCTTCCTTTGGTTCTTCAATTTTTTTATGCCTAATCCTCGTTTTTTTCCTGTGATCATAAATCTCCATTTTACCAGATGGTATCCCTTTCTTTTCTTGTTTCCTTGCCAGAAAAAATCCTTTCTTAGTTTATCCAATCTCTATACTACTCCTACTCCTGCAGGTATTGGAAACAAAGTTAGCATGTACGTAGGAAGGGCATCCAAGACTGCATTTATCAGAGTGAGCCTGCCCCTTTTGATAAATATTGTGCTTTCAATCTGACTAACTTCTTCTCACATCTCTCCAAGACAGAATTTTTTAATTTCTTTGTACTGTGATTTTGCTCCCAATGGCATCCCAGGTAGATAGCAGGTAGTGCTCCCACCTCGCCTTCTAGCACTGAGGCCAAGAGCTCCATATTGGAGACCATGTTTATGGGATATAAATGGATCTTTCCCCATTGATGTGAAGACCTGACATACCTTCAAAAAGCACCAGAATTACCCTAGGGTATCTTAGTTGTTCCTCATCTGCATCACAAAAAATCAAAGTGTCATCTGCATATTTGTGTAACCTCCAAACTCTTCTCATTGTTTGTGGACACTTCAAATCCCGCGATCCACCTATTTGTTTTAGCTGTCTTGATCATGTTATTAAGTCCCTCCATGGCACGAATAAAGAGGAATGAAGATAAAGGATCCCCTTGTCTGATTCCTCTTTGGGCTTCAAAAAGACCTTCGGGAGCACCGTTAATGAGGACAGAAAACTTTACTGTTGAGATGCAAAACCGTATCCATCTAATCCACTTTTCTCCAAATCCCATTTTCCTGAGTATATTGAGAAGGAACCCCCAGTTAACATGATCATAAGCTTTCTCAGTGTCCAGTTTGCATAGGATGCCTGGTTTCTTTTGACCCACTCTAGAGTCTATTGCTTCATTTGCTATTAAGACCGCATCCATGATTTTTCTTCCTTTGATGAAAGCCATCTGTTGGGAGTCTACCAGCTTGTACATCGCCCTTTTGATTCTCTCTGTTAAAACTTTAGACAAGTTGTCATAGAAACTGCCTATCAAGCTTATTGGTCTGAAGTCTTTAAGTTCCTTTGCTCCTTTCTTCTTTGGGGTCAAGGCAATATAGGTAGCATTGAAACTCTTCTCAAACATTTCCTGCTCATAGAAATAATGGAAGGCCGCCATGATGTCATGCTTAAGAATTTCCCAACATTTGATGAAAAAACCCATAGTGTAACTATCAGGTCCTGGGGCTTTATCAATTACACATAACTTCAAGCATTTATAAACTTCCTGCTCCTCAAATTTGGCCTGTAGTTGTGATCTTTCTTCCTCTGATATTGAAGGACAATTCACTAAATTTCCGTCAGGTCTCCATCTTTATGTTTCAGTATACATTTTCTCATAAAACTTGATAATTTCCTCATTACTCTGTTTGGTTCTGTGATGGTCTTTCCCTCTACTTCCAATTGGTCAATATGGTTGCTTCTTTTATGGGAATTTGCAGAATTATGGAAGAATTTTGTATTGTTATCTCCTTCCTTCAACCACAAAATTCTAGAACTTTGTCTCCAAGCACATTCCTCATTTTTTATCAGTTCTTCGTACTCCATAAAGATCTCTGCCTTCAAAGTAGCCTCTTCCTCTGTCAATGCTCTTTTGTTCAGCAAAGAGGGATTTTTTAGCCTTTGAAGCTGTCACAGGGCTGGAAGCTTACCTTGCGAGGAGTCACCTGTTTAGTGTTGATATTGATGGTAATATTGAAGAGTTGGCTGAAATTGTGATGTAACGTTTCTTGTTGTATATTTGGGACTTCCTCTGAGTGTAAAAAACAATGATCAAATGATGGTCAATGAGTTCTAGACATGTGCAAAGAAACTGATCCCCCGGGAAAATAGTATTTATCTTTAAGTGGAAGGCGCACTCTAATCAACATAAGAAAGAGGGGATTGATCAAAAATCTCATCCTTTTCCTTGAAGGCTGATGTGATTTGTTTCCAAGATTCTAAAATGGAGGGGGATATGAAGGAAATAGTAAGAGAGTTATGGGGGGTCAGATGGATCAGTTATACTCAACTGGAGGCAAGTGATATTAGGGGAGGGATTATCCTAAAGTGGGACAACAGAATTTGGGAAGGGGAGATCAGCAGTATAGGCTCTTACTCTGTAACCTGTTATCTACAGTGATTACAGGTAATAATCAGGATTTCTCTTGGTATCTTACTGGAGTATATGCATTAAATGACATAATGGAAAGGGAAGAGGCATGGTGGGAAATTGCATCAGTTAGGGTCTCTGATTTCAGGTCCATGGGTTGTCTCTAGAGATTTCAACACGGTTAGACATCCATCAGAAAAGAAGAATTGCAACAGAATTAAAAAATCAATGACAGACTTCTCCGAATTCATTGAAGACATGGAGTTGATAGACTTCGATTTAACATGTGGTCAATTTTCCTGGAAACAGGGGGATAGACAGGCAACTGCTGCTAGACTAGATAGATTCCTAGTTTCAGAAGGATGGAACACACATTTAGGACTATAAGACAACTTGTTATTCTTAGATTGACCTCAGATCACACAACGCAGATGCTACAATGTGGTGAGTATGAACTCGATAAATCTTATTTCAAGTTTGAGAATTGGTAGCTTTAAACTGAAGATTTTGGTGACATTGGTGACAGAGTGAAGAACCGGTGGGAGTCTTTCCACTGCACAGGAAGGCCCGACTATATCTTGGCTTTCAAACTGAAAGTTATGAAAGGAGAAATTGAAGGAATGGAGTAAAATAGTCAAGGGTAATATGGAATTATAGAAACAGAACATACCAAACCATTTAACATAATTAAAGGAGCCAAGAACAGAGGATTTTGACAGAAGAAGAAATAACCAAGAGGCTAACTTTATCACTGGAATTTGAAGATATCGATAGGCATGAGGAGACTGCTTGGAGGCAAAGATCCTGGGTACTATGGGGCTAAATTAAGGAGATAGAAATACCAATTTTTTCACAGGACAACTAATGCACACAGGAGAATAAATACCATCGGTAAACTAGTAGGAAGAGGAGAAACTTTGACAGACCCAATCAACATCAAGAAAGAAATAATCTCTTTCTTGAGTTCTCTACTCAGAGACAGAGGAATGGATACCACACTCTGCTAGGAGCCTGCAGGAACTGTCCCATGGTCAGTGCAAAAGACAAACTAATGTTGATGGCCCCCTTTGAACCACAACAGATTCTGGACTGCTCTAGGACCAGATGGTTATACTCTGGCTTCTTCCACCAATGTTGGGCAGTGATTAGTTCAGATGTAGTAGCTGTAGTACAAAACTTTTTATAATGTAGGTTTCTTTCAGAAGAGATATAGTGCTATATTTGTAGCTCAACTCCAAAGAAAGTGGGTGCTATTGAATTAACTGATTCCAGCCAATCAACTTGATTGGGAGTGTCTACAAGATCTTTTCCATACTCTCAGCAGAAAGCTTGAAAAAAGTAACCCACAACTTGGTGCCAACAGATGGCCTTCATCAAAGGAAGACAAATCATGGATGCTAGCTACTATGATGGCAATTGAATGTGTTGAAGGAATGCAGAGGAGCAATTTGCCAGATATCTTATGCACACTAGATATCCAAGAAAACTTTTGGCCATCTTAACTGGAACTACCGTCTTGAACTATTACAGAAGATGGGATTTGGATCCAAGTGGATAAGGTGGATCAAACATTAAACCGGCAGAGTCAAATTCTCAGTATTGGTCAACAGAGCCCCCTACTGGTTTTTTCTCTTCCTACATAGGCTTGAGACAAGGAGCTATAGAAGGCATAAGCAATATGATATAGACTGCAAAATTAAATGGATGGGTCAAAGGTTCCCAAGCAATTCCCAGTACAGTGAACGACTTACAAATATCCACCTGCGGTATACTGTTGACACCCTGGTTTTCTGTGAGGCTTCCAAAGAACAAATTCTATTATTGAGAGTGATTGTCATCCTTTCTGAATCCATATATGCTTACACATTATTTGGATAAAGAGCTACATTTATCGTGTCAATGAAATGGCTGATATTCAATCCTTGGCTGATGTTTTAGGAGAGACATGAACACTTCCTACTAAATACTGGGGTATGCCTCTTGGTGCAAAGAGAAAATATGTGAGATATGGAATGAGGTGTAGAAAAATGTGAAAGAAGACTAACCAACTGGAGAAGTCAATATATCTTTATGGGAGGAAGATTGACTTTGAACAACAACATGCTTGATGCTTTACCCACATATATGATGTCTATCTTTCCCTCCCCTATATATGTGATAGAAAAGATAGACGCCTTAAGGAGGAATTTCTTCTGGCTAGACAATGATGACAAGAAAAAATTCATCTTGGGTAACTTTGACAAAAAAACAAGAAGAAAGGGGGAATGGGAGTCAGGAACATGTTGATGCACAATAGACGTCTGATTATGATGTGGTTGTGGAGATTTGATATAGATGACAACCAGCTTTGGAAACAAGTTGCTAAAGCTAAATATGGAAAAGAGGGGTTATGGACAACAAAGGTAGTGACTACTTTCTATGGATGCAACATCTGGAAATCTAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTGAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTATCTTGTGGGCCCAATGATGGTTGACTTTTTTTTCAAACTAGTGTCACGTAAGCTATAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAAAAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGGTTGAGGGGGTACTTGTGCATTTTTCCGGAAATCTATCCGAAACCTTTGGCCGATTTTCCAACAAAGAATAGGCTTCAAAATTGGGAATGGAATGAAAAATTTCCTGTTGGAATGACGTTTGGATTAGAGAAAACACACCCAATCATCTCTTTCCAAAATTATACAGCTTTTGTCAACAAGCATCAATAGCTGACATGTGGACAGACATGGATTAAAGACTTATTGACCCTGGGAATATAAGAAATCAATGTATTTAGGGAACCGAAACTTATCATCTGCCAAACTCAAAAGAAATGAAAAACGGGCAAGTATTGAGTCTCAGATTTAGAAGAATTTTTGAATAATTGAGAGATGGAAAAAATTGCAGATTTCCTCCACATTCTCAGTTAAATGGTTTTTTAGAAGAGGTGGATAGCTTAGTTTGACATTGTCACAGCAAAAGGGAAGTTTTTGTAAAGTCTATATCTCACTAGCTCCAACAATCAAGTGGGTTGTTCACTATGGAAGATGAGCTGGTGGTGAAAATTCCTTACAATGTAAGCTTGTTTCACATGGCTTTTTACTACAAAAAAGGTTCTGACAAATGAAATACTTGAGCAAGAGAGGAATGCAACTATACTCAGATGTTATCTCTTTGTAATGAACAAGTAGATATAGTTAACCACCATTTTTTTTGCACTGTAAATGGACATATCGACTATGGAAACTTTTGATCAACTTGAGGAAAATTTAGTGGGTGATGCCAAGAAGAATAAAGGGAGTGCTAAACTTAAGGAACAGTGATGGCAATGCAACTAGCAGGGAGGAGATATAGAAAGATCGTCTCAGCTTTATTTGGTGGTCAGTTTTGACTAAGAGAAATCAGAGATGTTTTGAGGGAAAACATTGTGACATCCAGAAGATCGTGATAAATTGCCTACCCCTCTATTATTTTTGGTGTAAACAGAAGTTGTTCATACAAACTGAAGATATTTTGTATGTTCACAGTTTATAATAGTTAAGTTTTAACAGATAAGACCCTTATGTAATCAGCCTACTTTTTTGTCGGACTAACAATTTCGTGATGTAGTATTCCTGTTGATATTAATTTTTACTTTTATGAAAAATTTACCAACTCAAAAATATCATTTGAATGATCATGATGCAATACGAAGAGCATATATTCAAAAGTCTTTTCCAATTTCAAAATTACAAGTTTCTTCAATGATGAGCTTTTGAGTAACTATTTGGTATTTATAGAAAAAAGAACATTTTTAATATTTCCAGTGAGTTTATGATGGACACGTCTTAGAAAATGAGAACTCTGAGGAGAGGTGCAACAAACAACAACATACCCAGTGAAACTCCACAAGGTTTAAGGAGGGTAGAATGTATGCAAACCTTACCACTATCTCGTGGAGGTAACGATATTGTTTTCTGAGAGACCCTCGGCTCAAGTGCAACAAATCCCGGTATAAAGGAGACAATGAAGATCGAGGAGAATTTGGCTAATAATGAGGAAATGATGCAAAAGTTTACCAGAGAGATTAATCATGTGATAATCCAAACTCCATAAACAACACACTAGGGTAGACTATTAAGAAAAAAACAAACAATTATAAAAATAAAAATAAAACAAAAGAAGTACAATAATGCAACTAGTACCATTGCAAACACCAGCCACCCTATGCACGACAACATTACACTACCTACTAATTTTCTACCCTAATACGTATCCTCCACACCCTCTTATCTAGGATCATATGGTCGGTAGCTTGAAACTGCATTATATCATGTCTTTCATATCTCCCTAATACTTCTTCGGCCTACCTCTGCCTCTCTTCATTCCTTCTATAAACAACCTCTTGTACCTCCCCATTGGTGCATCTATGCATTTCCTCTTCACATGTCCAAACCATCTGAGTCTCGCTTCTCTCATTTATCTACCACTGAGGCCCATCCCACCTTATTTTGAATATCCTCATTTCTAACTTTATCACTACCTAGTATTATGGGTGGGCGTTCAGTTCTTTGGTTCGGTTTTATCAAATTTCACTTCGGTTTTTCGATTTTCTGTTTTAGAAAAGTGTGCACCATATACCAAACCAAAGTAATTTGGTTCCATTCGGTTTAGTTAGGTGTTTTTAAATTGGTTTTTCGGTTCGAATGAAAAATAAAATGAGGACAAAGTCAAAGTGTAAGATAATTAAAATTTAAAAATATGTTGAGGGATCATGTGTCTCTCATGGAACGCTTGTTGTGCTAACTAAAAGACTAATCATCTTTGTCAAGAACATTGTGCCTTCAACTATTTCTCTAGAAAAACAAGGACGAAGACGGGTTCCTTAACATAACATACATTGATAAAAATATGTTTTGGTTATTCTTGAAAACTAATATTTGAAGTTAACTATTAATTATACATTTGTTTTGTTTTTTTTAATTTGTTCATGAATGATTTAATTGTTAGTTGAATTTTTATTATTAATTTGTATTTTTTTCAATAAAAGTTCGGTTCTTCGGTGCACTGAAGTTCTAAGACCCTTACACCGAACTAAGGAACCGAACTTTTGAAAAAATAACACCGACACCGAATCGAAAATTGAAGAACTGAATTAGTTCGGTTCGATTTTTCAGTTTCCCGGTATTTATGCCCACCTGTACCTAGTATGGCCACACATCCACGGACCAAACATCCATCGCAACATTCTCATCTCTGCAACTTGCATCTCTTGGACATGGGAGTTCTTAAGTAGCCAACATTCAGTTCCATACAAAAATGTTGGTCGAACCACCTTGCTACACTACTTACCTTTGAGTTCCAGTGGTACCCTTTTATCACACAAGACTCTAGAGGCAAGCCTTCACTTCATCCATGTCACACCGATACGATGTGTGATATCATCGTCGATGTCCTTGCTCCCTTGACGTATAGATCCAAGATACTTGAATATATCTCACTTGGGGATATTTTGTGTGTCAAGCCTCACTTCCATGCTTACCTCATGCATCACATCATTGAATTTGCACTCCACATATTCTGTCTTGGTCCAGCTCAACCTCAGCCCTTTAGCCTCCAAAGTATGTCTCCACATCTCTAACTTAACATTAACTCCAAAGGTGTAGTAGTGTGCTTGAATTTATTTTTCTAATATATGGCATTGTTATATTAATTTATTCACTTCTTTAAATGTCGACGGTGCTTATGGAAAATCATGTGTAAGTCACTGGAAGATAACTCTAGGTTCTTACAAGTTGTCACATTTTACTGAGTGCTATATATTTGGAGTGTATTGTTAAGCTTAAAAAGTTCTATTGTAAGATTTCACAGCATGATATTAACATTATCTTTTGGCATTTTATAGAGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAAGTTAAAGTTCTCCCACATCTCACTCTCAACTCTATGAATGACATTTTCTGACGGTTGATAATTATCCATCTGTACAGCTTTTCTCAAAATTAGGAATGTATGAAGCTGATTTGCTTGGTTTAGACTTGTGAATGTTCCATTCTGGTCTTGGAGCACGCTATACATCCTAAGGATGAGTGATAAATTAGGGATGTTAAATGATTTTAAACATTTTGAGACAATTTTTTATCTCGTAGGCAGTAGGAGGAACTTGAAAAAGATTCGAAGAGAAAAAAGCAAGAATTTCTTCATTTATCTGCAAATGCTCTGCTATGCCATATCTGCTGCATGGTGCTAATATGAACATTTGTCATTTAGAAGTCCAAGCGAAGTATTCGAATTAGAGAGTCAGTTAAACAAAATACCATTGCAAGTAGCATTTTTGACAGTTTATCATATGTCTATCAAATCAAGGAGAAAATATCCCGAATGCTCAAATTTTAGTTACCAAGAAAAGAAAAAAAATCTGGGTACATAAAAAAGAAAAAGCTCCAAATTTTTTAATATATCTTGTTGCTTGGTTTGAAAATGGTGTTGCACTGATGTTTTATATTCCTTCACATGTTCGACTAATTCTAGGCAGTTCTTTTTTCTTTTCATTTAGTTATGTAGTTTGTAATTTCTTTTTCTTAACTAGTCTATTGATTGTTGTACAGAGAGATACTTAGGCTTCTTCCTACTACAAAATAGATGATCAACTGCTGAAAAAATTCTCTTATTTTATCATTCAATTTCAGGTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAGGTACTACGTCGTACATTCACCTGTCAACCTGAACAATGTTGTTTAACTATAACGTAACACGGTAACATTATAGCTACGCAGTTAAGGCTGTATATTAAAATTTGTTGTACCTGCACAGGATGATCAGTCTATTGGGTAGATGTAAGAAAATTTTAGAATGTCCTTGGAACACTGATGATTTCTCTAGGTCAGAGAGAGTTCCATAATTGATTTTGTTCCTGTAAGCTTCCTGATTTATTTTCTTGAACAAGGTTGGCTGCAAAAGATCATGTCACGAATATGATATTATTATTCTACACTGCCAGATGGAACACCTTCAAATTGATGACAAGAGGAGCATGCTTAGTATGTACATCAGTAAATAAAAGGACCAATTTTAACCAAAATGCAAATTGGACCATCATTGCATGTCAACTTTGTTTTTTTAGTCACACATGATGCTATTTGTGTTTTTAATCTTTCACGCAGTGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAGGTCATACTTCCATCATTCTGCCTCAGTTATAATTCCTATATGAATTCCCTACATCCTTTCTTCTCTATCCAAATAATAAATAGCGTCTTTCAACCTCAGTGATTCTTTATATCTCAATTATCCCTGCAATAGTTATCTAGTTTAATCTGAACGAGTGGCGGCTTTTGCCTAGTAGTTATTTTTTACCTTTTCTTTCTTCAGTCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAGGAAGAAGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGTAAAAAATTACAAAAGCCTCTTTCTTGATCAGGTCAATGTTTTTGCATTGCTCA</genome_strand>
        <mrna_strand>TATTTTCGGAGCTGGATAAGTCTTATCATTAGACTGCTCCTCTCTGTTGCCAAACATTCCGATTAGATGACAATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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......................................................................................................................................................................................................................................................................................................................TGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAG.........................................................................................................................................................................................................TCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGCGAGGAAGAAGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGTAAAAAATTACAAAAGCCTCTTTCTTGATCAGGGTCATGTTTTTGCATTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323647" ref_strand="+" ref_description="SGN-E323647 [cTOC-2-A17]">
      <seq>tccgattcgatgacaatgaccgtgtacacccctgcgcatgttaccaccagcgtcttaaattcccggctcctccgctctccgccacgacggacattgtcgacggcgagatatcaccgcattcttcgcttaacttgcgtgatgctaccggctacagcgcgggaaagcagacgaatgctcaacatagcccttggggtcttgcttcaatggctagctctacctaacgatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattagagaaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41518" stop="46763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41818" g_stop="42040" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="263" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="334" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E323647" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41818" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATTAGATGACAATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG</genome_strand>
        <mrna_strand>TCCGATTCGATGACAATGACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCATTCTTCGCTTAACTTGCGTGATGCTACCGGCTACAGCGCGGGAAAGCAGACGAATGCTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317975" ref_strand="+" ref_description="SGN-E317975 [cTOA-30-D15]">
      <seq>ttagatgacaattaccgtgtacacccctgcgcatgttaccaccagcgtcttaaattcccggctcctccgctctccgccacgacggacattgtcgacggcgagatatcaccgcaatttttgcttaacttgcgtgttaataccggagacaaggcgggaaagcagacgattggtcaacatagcccttggggtcttgcttcaatggctagctctacctaacgatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattagagaaatccttagagattgatcaacctaaatatggagattgccggaatatattgcgttctggtcctgcatcatctcttcgtgtcaatattcgagcagtagcacaatacgcagctgatggtggcaatggtaaattagctttcagtgatgttgatgagtgtctgagtgcattggaaggacttgactcgttgcttttgcgtgcatcaagaaaggatccaggggcctcaattgactcaatgaaggcacaaattgctactgcctttaatgcattggacagtcttcttaaaactgtcccaactgatgtgcttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41523" stop="62704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41823" g_stop="42040" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="258" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="329" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60647" g_stop="60741" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="424" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61522" g_stop="61589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="492" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61590" i_stop="62057" i_length="468">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62058" g_stop="62168" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="603" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.673" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62370" g_stop="62404" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="638" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E317975" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41823" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="60647" e_stop="60741"/>
          <exon e_start="61522" e_stop="61589"/>
          <exon e_start="62058" e_stop="62168"/>
          <exon e_start="62370" e_stop="62404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATGACAATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTCTAACGAACCAACGCCATAGGTCGTAGGAAGAAAACATTCGGTTTCATACTACAGTGCCCCATAACCAGATCCATATCAGGGGACCATAACATCATGCTGCAATCAGTGTGTCTATTTAGATCGAGTATTTCAATGATCTTTAAAGCAATACAGAGATATACTAGATTTAAAGGAGTAACAATGGATAGACACCCGAAGTTGGCACCACGGTCAGATAGACACTTTAAATGTGCCAGTGATCATTAGACACCTTTTCTTGATAGAAATTTGTATCATGAACATCTATCTGCGAGATCACCCGCTTGAGACTCACTCTTTGCTGATATCAGATGGTCAAATGAAATAATGACATCTGTAATCTATTTTTTTTAATAAAAATAGAATTAGAATAACTTATAAAATACAAATTTTATTTATTTACCTATACCATAAGATGGTAGATTTCCTAGGATCAATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACTTTATCAAAAAAAAAAAAACTATACTATAAGATGGAGTTTACATGCCAAAGCAGGCAGTGGGTCAACATGTCTACTTTGGCATGTAAGGTAGTTAGGTGATTTTAAATAAAATTAAATAACATGATTGGCTTAAAAACAAGTTAGAAACTTAAATGATAATGTCACTAAAACACAGGTGGTTAGAGAATCTTGAAAAAGGTAACGTTTGGCAGCTACTGAGATGCATTTGGCGGAGCTCAAATTCATTTAGGTGATTTCAAAAAAATTCTTGAGTTATTTGTTTGTATTTTTTTTAATTTGTTATATATTTGAAAATTGTGTATTATAAGAGGGAGTTTGCATGCCAAAGCAGGCAGCAGGTCAACATGTCTTCTTTGACATGTAAAGTTAGCTGGGTTATTTTAAATAAGATTTAATAACATGACTGGCTATAAAACAAGGTAGAAACTTAAATTACAATGACACTAAAACACATGTGGTTACATAATATTGAAAGGGGTAACTTTTGGCAGGTACTGAGACGCATTTGGTGGAGCTTAAATCCATTCAGGTGTTCTTAAAAGAATTCTTGACTTATTTGTTTGTATTTTTTTAATTAGCTAAATATTTAAAAATTTTCATAAAAAATATCATTAATCAGAATAATTAGCAACTTATAATATTTAAAAGACAAAAAATCGAATTGACTCTCGAATTCTATTAGTGCCACATAAATTGGAGAAGAGGAAGTAACATGTATTATCTGAAAATTAAGCTAAAAGTACTATCAATCTCAATAATTAATAATTCAAAATATTTAAAAATCATATAACAATTTAGTTGACTCTCCTAATTCCATCCATGCAGTATAAAATTGAGATAAATAGAGTAACACATATTGAGCATGTGTTTGCACGGGCTCTCCAGTAAATATGAGAAAAGCACTCTGTTCCTCTAATTTCTTTCATCAAATGTTTCAGAACTGAACCTCCGATCCCCCCCCCCCCCCCCTTTTTTTTTTTTAAGTTGTATTCTTCAGCATTAAGGTATGCTGGCTACCTCCAAAAAATTACAAGCTAAAACCATAATTACATTGATCCTAGGAAATCTACCAACTGTTCTGCTACTTCTATACCTTCTTCTTTACACCAAAAAATCAACATGTTAATGCGATTTTCTTTAACTTTCTGCATAGTGTTAGTAATATTCTCATGACACCTAAGATCTCTTTCTCTCCAAATAGTCCACCAGACACAAGCTGGTACTATAGACCACCATTTGTTTTATGTCTTGCTCCCCCCCCCCCCCCCCCTCATCCAGCAGCTCAAAAGATCAGCAGTATGTTCTGGCATCACCCAAGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGAACAGTAACCCTACAGTGTAGAAATAAGTGGTTGTTCGTTTCTTCCTTCTCATGACAAAAAAAACATTTGGAGACAATCTGGAAGCCTCTTTTTCTGAGTTTCTCCTGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAACATTTTACCCTGGTTGGAGTGTTGCCCTCCCATATTTGTTTCCATGGACCATGAATTCCCCCAGAGTGAGTCATGACCTCTCTCCTATACAGTCTACGTACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCCGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCGTTTAGATTTCTCCTGAAGGTGAGGTTCCATCCCTGACGGGACCAAATCTCAGAAATTTTAGCCTCAGGATTGGTGCAGAACGAGAAGAGATCAGGGAAAACCGTGTTTAGACAGTCTTGTCCAATCCACTTGTCCCTCCCAAAAAATACTTTGTTGCCCTCTCCCACCTTGACCACCAAATTCTTCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACCCCATATGTGCTATCTACTACATTAGACATCCACTCCTCGGTCTGCCCATACTTGTTGAGAATTGCTCTTCTCCATAATGCCTGATCTTCAACCACAAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCCTCAGATTTTTTATGCCAAGACCCCCTGTCTTCTTGCTTAGTAAGGCTGTCTGCCATTTAACTGAAGTGTATTTTTTCTTCTTCTTTGTTCCCCGACCATAGGAAATCCCGCCTCAATTTATCCAACCTCTCTTCTACCTTTGCTGGTAGAGGGAAAGGAGACATAACATATGTAGGCAACACATCTAGGACCGAATAGATCAGAGTGACTCTTCCTCCCAGAGATAGATAGTTTGTCTTCCAATTAGCCAACCTCTTCTCTGTCTTCTCAATGATTCAATCCCAAATCACCAGCTCCTTATGATTATTCCCCAAAGGCATTCCCAACATCTGAATATTTGCCACTTCCTTGACTTGGAAGATGCTGCTTTTCGCCCAGTTCACAGCCAGTCCGGAGACGGCCTCAAAAATCACCAAAACAACTTTAATGTAACTAACTTGTTCAGCCTTTGCATCGCAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATCTGCAAATTGAGTCCTGACTGATTACTAATGTTGAAACCCTTTATCCAGTCCTTCTGATTGGCCGCTCTAATCATACTGTTAAGACCCTCCATAGCTAAAATAAAAAGGAATAGGGAGAGAGGGTCTCCCTGTCGTAAACCTCTCTCAGAAGGAAAAAAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAATCCTATCCATTTAAGCCATTTGTCTCAAACCCCATCTGCCTCAGTATATTAAGTAGAAACTCCCAATTGACATGATCATATGCCTTTTCTACATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTCGAGTCTACACATTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATGAAGGCCATTTGGTGATTATTCACTAATTTGCTTATCACTTTCTTTAATCTCTCTGCCAACAGCTTGCCAAAAACCTTGTAAACTCCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCAAAGCTCCTGTCTTTTTTGGGATTAGAGCCACATAGGTGACGTTGAGACTCTTCTCTATTTCATGTCTTTCATCAAATTGTGTCACTGCATTCATGAAGTCTGCCTTCAGTATCTCCCAGAAGTTTTGGAAAAAACTCATCGGAAAGCCATCTGGTCCGGGGGCCTTATCACTAGTACATGCTTTTATGCAATTTAAAACTTCCTCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGCTTTCTGCTCCCTGTACTTTAATTTCTGGCCTCCATTGTTCTGTTTCTCTGTAAAGATTTTGATAGTAACTGATTATGGTTCCTATAATTTCTTCTGAATCTGTTACTGTAACCCCTTCAACCATCAGCTTATCTTATCAATGGTGTTGAATCTTTTATGAGCTGTAGCCATCCTGTGAAAATACTTGGTATTTCTGTCTCCGTGTTTGAGCCAGTGTATTCTTTCGATCCCTCTCCCCTTTTTCTTTCTACACCTGTCGTTATCCTCTCCCTCTTTTTCTTTGAACACCCCCCCCCCCCTCTTCCTCTTCTTCTTCCCCACCCTTCCTCCTCTACACCTTCCACCTTTCCCTTCCCCGCTCCTCCTTCAACAAATCTGTCAAAACTGTTGCGGGTCAGAATCTCTCTCAAAATTCTGAAATGTTGTTTTTTTAAAAAAATTGTAGAATTATCAAATGTTCTCAGAGTTAATTGAGCATTCATGTTTTTTCTTAAATTTTGATATCGGAAACATTATGCACTCTTCAAATAAATTATAGATTTTAAGTTGTACTTCATGTGAAATTAGTTGGTTTTTGAGTCATTATGATTGAAGTCCATCCTGTGCACTGCTTCAGTATGTTGTAATGTTAAAGCAATTCACTCTTATTATACAAGATGTTGTCGTATCAGTTCATATTTTTTCAGTTGGTTGTGGTGGTATATGGTGGAGGTGGGCAGAGGGTGGTGGAAAAAGTTGGAGTTAGAATAGGTCACTTCCATAATGTGTTGCCTCTTCTTTTTTTTTTTTGAGAAGGTAACGATTTGTATTATAAACCAATACTTATGTAGTACTGAAAGCCCCTTTACAAAAACGTATGAAATTCTAGGAACAAAAACAGCAAGCCTAGCATGATTCTAATACTTTTCTTTTTTTTGAAATAGATGATTCTAGTACTTCAAGGATTGCTTCTGCATCTACAGGGGAACTCTTTGTACACCAAAAACATAACAAAATACAATCTGTTTTGATCATCTGTAGGGATCTATCCTCAAAGCTTCTAGCATTCCTTTCTCTCCAAATGGTCCACCAGATGCATGCTGGAATTGTCCTCCAATAATTTCTGTTCTTTGCCTCAATTCCTGCATCCTCCCATCTTGAGAGAGTGTCAACAATCGTGCTAGGCATTGGTTATCCAGATTTGTCTCCAGGCCAATTGAGGGTTAGAGGAGTCCTGATCATGACCTTGTAACCTGAGCTCACTTTGAATCTTCCTTTGTTGTGCTCTGTCCACCGTAGGCAGTCCTCCCCTTCCTTCAAACCTTGAAATGATTCCAACCTTTTAAAGAATTCAACTAATCTACAAACTTCCCATTCATTTAAATTCCTTCTGATAGTTAGATCCCAACCTTGGGGAGACCACATTTCAGCCACTGTTCTGTCTTTATGCAGTGCTAAGTCAAAGATGTTGGGGAAGATCTCTGACAAATTTTGATTACCAAGCCATCTATCTTTCCAGAATTGTGTCCTGACACCATTGTGTACTGTTATAGTAGTATGATTCCTTAGGAAAGGCCACCAGTTCCTAATTGATCTCCAAACAGTAACACCATAGGGATTGGTTGCTTCCTTGGTGACCCATGAATCCATCTCTCCGTACTTCACTTTAATCACCTTGTTCCACATTGAGTGTGGTTCATGAGCATATCTCCACAACCATTTCAGCTTTAGAGCCTTCCTTTGGTTCTTCAATTTTTTTATGCCTAATCCTCGTTTTTTTCCTGTGATCATAAATCTCCATTTTACCAGATGGTATCCCTTTCTTTTCTTGTTTCCTTGCCAGAAAAAATCCTTTCTTAGTTTATCCAATCTCTATACTACTCCTACTCCTGCAGGTATTGGAAACAAAGTTAGCATGTACGTAGGAAGGGCATCCAAGACTGCATTTATCAGAGTGAGCCTGCCCCTTTTGATAAATATTGTGCTTTCAATCTGACTAACTTCTTCTCACATCTCTCCAAGACAGAATTTTTTAATTTCTTTGTACTGTGATTTTGCTCCCAATGGCATCCCAGGTAGATAGCAGGTAGTGCTCCCACCTCGCCTTCTAGCACTGAGGCCAAGAGCTCCATATTGGAGACCATGTTTATGGGATATAAATGGATCTTTCCCCATTGATGTGAAGACCTGACATACCTTCAAAAAGCACCAGAATTACCCTAGGGTATCTTAGTTGTTCCTCATCTGCATCACAAAAAATCAAAGTGTCATCTGCATATTTGTGTAACCTCCAAACTCTTCTCATTGTTTGTGGACACTTCAAATCCCGCGATCCACCTATTTGTTTTAGCTGTCTTGATCATGTTATTAAGTCCCTCCATGGCACGAATAAAGAGGAATGAAGATAAAGGATCCCCTTGTCTGATTCCTCTTTGGGCTTCAAAAAGACCTTCGGGAGCACCGTTAATGAGGACAGAAAACTTTACTGTTGAGATGCAAAACCGTATCCATCTAATCCACTTTTCTCCAAATCCCATTTTCCTGAGTATATTGAGAAGGAACCCCCAGTTAACATGATCATAAGCTTTCTCAGTGTCCAGTTTGCATAGGATGCCTGGTTTCTTTTGACCCACTCTAGAGTCTATTGCTTCATTTGCTATTAAGACCGCATCCATGATTTTTCTTCCTTTGATGAAAGCCATCTGTTGGGAGTCTACCAGCTTGTACATCGCCCTTTTGATTCTCTCTGTTAAAACTTTAGACAAGTTGTCATAGAAACTGCCTATCAAGCTTATTGGTCTGAAGTCTTTAAGTTCCTTTGCTCCTTTCTTCTTTGGGGTCAAGGCAATATAGGTAGCATTGAAACTCTTCTCAAACATTTCCTGCTCATAGAAATAATGGAAGGCCGCCATGATGTCATGCTTAAGAATTTCCCAACATTTGATGAAAAAACCCATAGTGTAACTATCAGGTCCTGGGGCTTTATCAATTACACATAACTTCAAGCATTTATAAACTTCCTGCTCCTCAAATTTGGCCTGTAGTTGTGATCTTTCTTCCTCTGATATTGAAGGACAATTCACTAAATTTCCGTCAGGTCTCCATCTTTATGTTTCAGTATACATTTTCTCATAAAACTTGATAATTTCCTCATTACTCTGTTTGGTTCTGTGATGGTCTTTCCCTCTACTTCCAATTGGTCAATATGGTTGCTTCTTTTATGGGAATTTGCAGAATTATGGAAGAATTTTGTATTGTTATCTCCTTCCTTCAACCACAAAATTCTAGAACTTTGTCTCCAAGCACATTCCTCATTTTTTATCAGTTCTTCGTACTCCATAAAGATCTCTGCCTTCAAAGTAGCCTCTTCCTCTGTCAATGCTCTTTTGTTCAGCAAAGAGGGATTTTTTAGCCTTTGAAGCTGTCACAGGGCTGGAAGCTTACCTTGCGAGGAGTCACCTGTTTAGTGTTGATATTGATGGTAATATTGAAGAGTTGGCTGAAATTGTGATGTAACGTTTCTTGTTGTATATTTGGGACTTCCTCTGAGTGTAAAAAACAATGATCAAATGATGGTCAATGAGTTCTAGACATGTGCAAAGAAACTGATCCCCCGGGAAAATAGTATTTATCTTTAAGTGGAAGGCGCACTCTAATCAACATAAGAAAGAGGGGATTGATCAAAAATCTCATCCTTTTCCTTGAAGGCTGATGTGATTTGTTTCCAAGATTCTAAAATGGAGGGGGATATGAAGGAAATAGTAAGAGAGTTATGGGGGGTCAGATGGATCAGTTATACTCAACTGGAGGCAAGTGATATTAGGGGAGGGATTATCCTAAAGTGGGACAACAGAATTTGGGAAGGGGAGATCAGCAGTATAGGCTCTTACTCTGTAACCTGTTATCTACAGTGATTACAGGTAATAATCAGGATTTCTCTTGGTATCTTACTGGAGTATATGCATTAAATGACATAATGGAAAGGGAAGAGGCATGGTGGGAAATTGCATCAGTTAGGGTCTCTGATTTCAGGTCCATGGGTTGTCTCTAGAGATTTCAACACGGTTAGACATCCATCAGAAAAGAAGAATTGCAACAGAATTAAAAAATCAATGACAGACTTCTCCGAATTCATTGAAGACATGGAGTTGATAGACTTCGATTTAACATGTGGTCAATTTTCCTGGAAACAGGGGGATAGACAGGCAACTGCTGCTAGACTAGATAGATTCCTAGTTTCAGAAGGATGGAACACACATTTAGGACTATAAGACAACTTGTTATTCTTAGATTGACCTCAGATCACACAACGCAGATGCTACAATGTGGTGAGTATGAACTCGATAAATCTTATTTCAAGTTTGAGAATTGGTAGCTTTAAACTGAAGATTTTGGTGACATTGGTGACAGAGTGAAGAACCGGTGGGAGTCTTTCCACTGCACAGGAAGGCCCGACTATATCTTGGCTTTCAAACTGAAAGTTATGAAAGGAGAAATTGAAGGAATGGAGTAAAATAGTCAAGGGTAATATGGAATTATAGAAACAGAACATACCAAACCATTTAACATAATTAAAGGAGCCAAGAACAGAGGATTTTGACAGAAGAAGAAATAACCAAGAGGCTAACTTTATCACTGGAATTTGAAGATATCGATAGGCATGAGGAGACTGCTTGGAGGCAAAGATCCTGGGTACTATGGGGCTAAATTAAGGAGATAGAAATACCAATTTTTTCACAGGACAACTAATGCACACAGGAGAATAAATACCATCGGTAAACTAGTAGGAAGAGGAGAAACTTTGACAGACCCAATCAACATCAAGAAAGAAATAATCTCTTTCTTGAGTTCTCTACTCAGAGACAGAGGAATGGATACCACACTCTGCTAGGAGCCTGCAGGAACTGTCCCATGGTCAGTGCAAAAGACAAACTAATGTTGATGGCCCCCTTTGAACCACAACAGATTCTGGACTGCTCTAGGACCAGATGGTTATACTCTGGCTTCTTCCACCAATGTTGGGCAGTGATTAGTTCAGATGTAGTAGCTGTAGTACAAAACTTTTTATAATGTAGGTTTCTTTCAGAAGAGATATAGTGCTATATTTGTAGCTCAACTCCAAAGAAAGTGGGTGCTATTGAATTAACTGATTCCAGCCAATCAACTTGATTGGGAGTGTCTACAAGATCTTTTCCATACTCTCAGCAGAAAGCTTGAAAAAAGTAACCCACAACTTGGTGCCAACAGATGGCCTTCATCAAAGGAAGACAAATCATGGATGCTAGCTACTATGATGGCAATTGAATGTGTTGAAGGAATGCAGAGGAGCAATTTGCCAGATATCTTATGCACACTAGATATCCAAGAAAACTTTTGGCCATCTTAACTGGAACTACCGTCTTGAACTATTACAGAAGATGGGATTTGGATCCAAGTGGATAAGGTGGATCAAACATTAAACCGGCAGAGTCAAATTCTCAGTATTGGTCAACAGAGCCCCCTACTGGTTTTTTCTCTTCCTACATAGGCTTGAGACAAGGAGCTATAGAAGGCATAAGCAATATGATATAGACTGCAAAATTAAATGGATGGGTCAAAGGTTCCCAAGCAATTCCCAGTACAGTGAACGACTTACAAATATCCACCTGCGGTATACTGTTGACACCCTGGTTTTCTGTGAGGCTTCCAAAGAACAAATTCTATTATTGAGAGTGATTGTCATCCTTTCTGAATCCATATATGCTTACACATTATTTGGATAAAGAGCTACATTTATCGTGTCAATGAAATGGCTGATATTCAATCCTTGGCTGATGTTTTAGGAGAGACATGAACACTTCCTACTAAATACTGGGGTATGCCTCTTGGTGCAAAGAGAAAATATGTGAGATATGGAATGAGGTGTAGAAAAATGTGAAAGAAGACTAACCAACTGGAGAAGTCAATATATCTTTATGGGAGGAAGATTGACTTTGAACAACAACATGCTTGATGCTTTACCCACATATATGATGTCTATCTTTCCCTCCCCTATATATGTGATAGAAAAGATAGACGCCTTAAGGAGGAATTTCTTCTGGCTAGACAATGATGACAAGAAAAAATTCATCTTGGGTAACTTTGACAAAAAAACAAGAAGAAAGGGGGAATGGGAGTCAGGAACATGTTGATGCACAATAGACGTCTGATTATGATGTGGTTGTGGAGATTTGATATAGATGACAACCAGCTTTGGAAACAAGTTGCTAAAGCTAAATATGGAAAAGAGGGGTTATGGACAACAAAGGTAGTGACTACTTTCTATGGATGCAACATCTGGAAATCTAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTGAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTATCTTGTGGGCCCAATGATGGTTGACTTTTTTTTCAAACTAGTGTCACGTAAGCTATAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAAAAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGGTTGAGGGGGTACTTGTGCATTTTTCCGGAAATCTATCCGAAACCTTTGGCCGATTTTCCAACAAAGAATAGGCTTCAAAATTGGGAATGGAATGAAAAATTTCCTGTTGGAATGACGTTTGGATTAGAGAAAACACACCCAATCATCTCTTTCCAAAATTATACAGCTTTTGTCAACAAGCATCAATAGCTGACATGTGGACAGACATGGATTAAAGACTTATTGACCCTGGGAATATAAGAAATCAATGTATTTAGGGAACCGAAACTTATCATCTGCCAAACTCAAAAGAAATGAAAAACGGGCAAGTATTGAGTCTCAGATTTAGAAGAATTTTTGAATAATTGAGAGATGGAAAAAATTGCAGATTTCCTCCACATTCTCAGTTAAATGGTTTTTTAGAAGAGGTGGATAGCTTAGTTTGACATTGTCACAGCAAAAGGGAAGTTTTTGTAAAGTCTATATCTCACTAGCTCCAACAATCAAGTGGGTTGTTCACTATGGAAGATGAGCTGGTGGTGAAAATTCCTTACAATGTAAGCTTGTTTCACATGGCTTTTTACTACAAAAAAGGTTCTGACAAATGAAATACTTGAGCAAGAGAGGAATGCAACTATACTCAGATGTTATCTCTTTGTAATGAACAAGTAGATATAGTTAACCACCATTTTTTTTGCACTGTAAATGGACATATCGACTATGGAAACTTTTGATCAACTTGAGGAAAATTTAGTGGGTGATGCCAAGAAGAATAAAGGGAGTGCTAAACTTAAGGAACAGTGATGGCAATGCAACTAGCAGGGAGGAGATATAGAAAGATCGTCTCAGCTTTATTTGGTGGTCAGTTTTGACTAAGAGAAATCAGAGATGTTTTGAGGGAAAACATTGTGACATCCAGAAGATCGTGATAAATTGCCTACCCCTCTATTATTTTTGGTGTAAACAGAAGTTGTTCATACAAACTGAAGATATTTTGTATGTTCACAGTTTATAATAGTTAAGTTTTAACAGATAAGACCCTTATGTAATCAGCCTACTTTTTTGTCGGACTAACAATTTCGTGATGTAGTATTCCTGTTGATATTAATTTTTACTTTTATGAAAAATTTACCAACTCAAAAATATCATTTGAATGATCATGATGCAATACGAAGAGCATATATTCAAAAGTCTTTTCCAATTTCAAAATTACAAGTTTCTTCAATGATGAGCTTTTGAGTAACTATTTGGTATTTATAGAAAAAAGAACATTTTTAATATTTCCAGTGAGTTTATGATGGACACGTCTTAGAAAATGAGAACTCTGAGGAGAGGTGCAACAAACAACAACATACCCAGTGAAACTCCACAAGGTTTAAGGAGGGTAGAATGTATGCAAACCTTACCACTATCTCGTGGAGGTAACGATATTGTTTTCTGAGAGACCCTCGGCTCAAGTGCAACAAATCCCGGTATAAAGGAGACAATGAAGATCGAGGAGAATTTGGCTAATAATGAGGAAATGATGCAAAAGTTTACCAGAGAGATTAATCATGTGATAATCCAAACTCCATAAACAACACACTAGGGTAGACTATTAAGAAAAAAACAAACAATTATAAAAATAAAAATAAAACAAAAGAAGTACAATAATGCAACTAGTACCATTGCAAACACCAGCCACCCTATGCACGACAACATTACACTACCTACTAATTTTCTACCCTAATACGTATCCTCCACACCCTCTTATCTAGGATCATATGGTCGGTAGCTTGAAACTGCATTATATCATGTCTTTCATATCTCCCTAATACTTCTTCGGCCTACCTCTGCCTCTCTTCATTCCTTCTATAAACAACCTCTTGTACCTCCCCATTGGTGCATCTATGCATTTCCTCTTCACATGTCCAAACCATCTGAGTCTCGCTTCTCTCATTTATCTACCACTGAGGCCCATCCCACCTTATTTTGAATATCCTCATTTCTAACTTTATCACTACCTAGTATTATGGGTGGGCGTTCAGTTCTTTGGTTCGGTTTTATCAAATTTCACTTCGGTTTTTCGATTTTCTGTTTTAGAAAAGTGTGCACCATATACCAAACCAAAGTAATTTGGTTCCATTCGGTTTAGTTAGGTGTTTTTAAATTGGTTTTTCGGTTCGAATGAAAAATAAAATGAGGACAAAGTCAAAGTGTAAGATAATTAAAATTTAAAAATATGTTGAGGGATCATGTGTCTCTCATGGAACGCTTGTTGTGCTAACTAAAAGACTAATCATCTTTGTCAAGAACATTGTGCCTTCAACTATTTCTCTAGAAAAACAAGGACGAAGACGGGTTCCTTAACATAACATACATTGATAAAAATATGTTTTGGTTATTCTTGAAAACTAATATTTGAAGTTAACTATTAATTATACATTTGTTTTGTTTTTTTTAATTTGTTCATGAATGATTTAATTGTTAGTTGAATTTTTATTATTAATTTGTATTTTTTTCAATAAAAGTTCGGTTCTTCGGTGCACTGAAGTTCTAAGACCCTTACACCGAACTAAGGAACCGAACTTTTGAAAAAATAACACCGACACCGAATCGAAAATTGAAGAACTGAATTAGTTCGGTTCGATTTTTCAGTTTCCCGGTATTTATGCCCACCTGTACCTAGTATGGCCACACATCCACGGACCAAACATCCATCGCAACATTCTCATCTCTGCAACTTGCATCTCTTGGACATGGGAGTTCTTAAGTAGCCAACATTCAGTTCCATACAAAAATGTTGGTCGAACCACCTTGCTACACTACTTACCTTTGAGTTCCAGTGGTACCCTTTTATCACACAAGACTCTAGAGGCAAGCCTTCACTTCATCCATGTCACACCGATACGATGTGTGATATCATCGTCGATGTCCTTGCTCCCTTGACGTATAGATCCAAGATACTTGAATATATCTCACTTGGGGATATTTTGTGTGTCAAGCCTCACTTCCATGCTTACCTCATGCATCACATCATTGAATTTGCACTCCACATATTCTGTCTTGGTCCAGCTCAACCTCAGCCCTTTAGCCTCCAAAGTATGTCTCCACATCTCTAACTTAACATTAACTCCAAAGGTGTAGTAGTGTGCTTGAATTTATTTTTCTAATATATGGCATTGTTATATTAATTTATTCACTTCTTTAAATGTCGACGGTGCTTATGGAAAATCATGTGTAAGTCACTGGAAGATAACTCTAGGTTCTTACAAGTTGTCACATTTTACTGAGTGCTATATATTTGGAGTGTATTGTTAAGCTTAAAAAGTTCTATTGTAAGATTTCACAGCATGATATTAACATTATCTTTTGGCATTTTATAGAGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAAGTTAAAGTTCTCCCACATCTCACTCTCAACTCTATGAATGACATTTTCTGACGGTTGATAATTATCCATCTGTACAGCTTTTCTCAAAATTAGGAATGTATGAAGCTGATTTGCTTGGTTTAGACTTGTGAATGTTCCATTCTGGTCTTGGAGCACGCTATACATCCTAAGGATGAGTGATAAATTAGGGATGTTAAATGATTTTAAACATTTTGAGACAATTTTTTATCTCGTAGGCAGTAGGAGGAACTTGAAAAAGATTCGAAGAGAAAAAAGCAAGAATTTCTTCATTTATCTGCAAATGCTCTGCTATGCCATATCTGCTGCATGGTGCTAATATGAACATTTGTCATTTAGAAGTCCAAGCGAAGTATTCGAATTAGAGAGTCAGTTAAACAAAATACCATTGCAAGTAGCATTTTTGACAGTTTATCATATGTCTATCAAATCAAGGAGAAAATATCCCGAATGCTCAAATTTTAGTTACCAAGAAAAGAAAAAAAATCTGGGTACATAAAAAAGAAAAAGCTCCAAATTTTTTAATATATCTTGTTGCTTGGTTTGAAAATGGTGTTGCACTGATGTTTTATATTCCTTCACATGTTCGACTAATTCTAGGCAGTTCTTTTTTCTTTTCATTTAGTTATGTAGTTTGTAATTTCTTTTTCTTAACTAGTCTATTGATTGTTGTACAGAGAGATACTTAGGCTTCTTCCTACTACAAAATAGATGATCAACTGCTGAAAAAATTCTCTTATTTTATCATTCAATTTCAGGTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAGGTACTACGTCGTACATTCACCTGTCAACCTGAACAATGTTGTTTAACTATAACGTAACACGGTAACATTATAGCTACGCAGTTAAGGCTGTATATTAAAATTTGTTGTACCTGCACAGGATGATCAGTCTATTGGGTAGATGTAAGAAAATTTTAGAATGTCCTTGGAACACTGATGATTTCTCTAGGTCAGAGAGAGTTCCATAATTGATTTTGTTCCTGTAAGCTTCCTGATTTATTTTCTTGAACAAGGTTGGCTGCAAAAGATCATGTCACGAATATGATATTATTATTCTACACTGCCAGATGGAACACCTTCAAATTGATGACAAGAGGAGCATGCTTAGTATGTACATCAGTAAATAAAAGGACCAATTTTAACCAAAATGCAAATTGGACCATCATTGCATGTCAACTTTGTTTTTTTAGTCACACATGATGCTATTTGTGTTTTTAATCTTTCACGCAGTGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAGGTCATACTTCCATCATTCTGCCTCAGTTATAATTCCTATATGAATTCCCTACATCCTTTCTTCTCTATCCAAATAATAAATAGCGTCTTTCAACCTCAGTGATTCTTTATATCTCAATTATCCCTGCAATAGTTATCTAGTTTAATCTGAACGAGTGGCGGCTTTTGCCTAGTAGTTATTTTTTACCTTTTCTTTCTTCAGTCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAA</genome_strand>
        <mrna_strand>TTAGATGACAATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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........................................................................................................................................................................................................................................................TGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTTAATGCATTGGACAG.........................................................................................................................................................................................................TCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466619" ref_strand="+" ref_description="SGN-E466619 [cPRO-25-E12]">
      <seq>gacaattaccatgtacacccctgcgcatgttaccaccagcgtcttaaattcccggctcctccgctctccgccacgacaaacactgtcgccggcgagatatcaccgcaattttagcttaacttgcgcgttattaccggagacaaggcgggaaagcagacgattggtcaacatagcccttggagttttgcttcaatggctagctctacctaaagatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattagagaaatctttggaggttgatcaacctaaatatggagattgccggaatatattgcgttctggtcctgcatcatctcttcgtgtcaatattcgagcagtagcacaatacgcagctgatggtggcaatggtaaatcagctttcagtgatgttgatcagtgtctgagtgcattgggaagacttgactcngtgcttttgcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41529" stop="61913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41829" g_stop="42040" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="252" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="323" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60647" g_stop="60741" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="418" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61522" g_stop="61589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="486" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E466619" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41829" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="60647" e_stop="60741"/>
          <exon e_start="61522" e_stop="61589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTCTAACGAACCAACGCCATAGGTCGTAGGAAGAAAACATTCGGTTTCATACTACAGTGCCCCATAACCAGATCCATATCAGGGGACCATAACATCATGCTGCAATCAGTGTGTCTATTTAGATCGAGTATTTCAATGATCTTTAAAGCAATACAGAGATATACTAGATTTAAAGGAGTAACAATGGATAGACACCCGAAGTTGGCACCACGGTCAGATAGACACTTTAAATGTGCCAGTGATCATTAGACACCTTTTCTTGATAGAAATTTGTATCATGAACATCTATCTGCGAGATCACCCGCTTGAGACTCACTCTTTGCTGATATCAGATGGTCAAATGAAATAATGACATCTGTAATCTATTTTTTTTAATAAAAATAGAATTAGAATAACTTATAAAATACAAATTTTATTTATTTACCTATACCATAAGATGGTAGATTTCCTAGGATCAATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACTTTATCAAAAAAAAAAAAACTATACTATAAGATGGAGTTTACATGCCAAAGCAGGCAGTGGGTCAACATGTCTACTTTGGCATGTAAGGTAGTTAGGTGATTTTAAATAAAATTAAATAACATGATTGGCTTAAAAACAAGTTAGAAACTTAAATGATAATGTCACTAAAACACAGGTGGTTAGAGAATCTTGAAAAAGGTAACGTTTGGCAGCTACTGAGATGCATTTGGCGGAGCTCAAATTCATTTAGGTGATTTCAAAAAAATTCTTGAGTTATTTGTTTGTATTTTTTTTAATTTGTTATATATTTGAAAATTGTGTATTATAAGAGGGAGTTTGCATGCCAAAGCAGGCAGCAGGTCAACATGTCTTCTTTGACATGTAAAGTTAGCTGGGTTATTTTAAATAAGATTTAATAACATGACTGGCTATAAAACAAGGTAGAAACTTAAATTACAATGACACTAAAACACATGTGGTTACATAATATTGAAAGGGGTAACTTTTGGCAGGTACTGAGACGCATTTGGTGGAGCTTAAATCCATTCAGGTGTTCTTAAAAGAATTCTTGACTTATTTGTTTGTATTTTTTTAATTAGCTAAATATTTAAAAATTTTCATAAAAAATATCATTAATCAGAATAATTAGCAACTTATAATATTTAAAAGACAAAAAATCGAATTGACTCTCGAATTCTATTAGTGCCACATAAATTGGAGAAGAGGAAGTAACATGTATTATCTGAAAATTAAGCTAAAAGTACTATCAATCTCAATAATTAATAATTCAAAATATTTAAAAATCATATAACAATTTAGTTGACTCTCCTAATTCCATCCATGCAGTATAAAATTGAGATAAATAGAGTAACACATATTGAGCATGTGTTTGCACGGGCTCTCCAGTAAATATGAGAAAAGCACTCTGTTCCTCTAATTTCTTTCATCAAATGTTTCAGAACTGAACCTCCGATCCCCCCCCCCCCCCCCTTTTTTTTTTTTAAGTTGTATTCTTCAGCATTAAGGTATGCTGGCTACCTCCAAAAAATTACAAGCTAAAACCATAATTACATTGATCCTAGGAAATCTACCAACTGTTCTGCTACTTCTATACCTTCTTCTTTACACCAAAAAATCAACATGTTAATGCGATTTTCTTTAACTTTCTGCATAGTGTTAGTAATATTCTCATGACACCTAAGATCTCTTTCTCTCCAAATAGTCCACCAGACACAAGCTGGTACTATAGACCACCATTTGTTTTATGTCTTGCTCCCCCCCCCCCCCCCCCTCATCCAGCAGCTCAAAAGATCAGCAGTATGTTCTGGCATCACCCAAGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGAACAGTAACCCTACAGTGTAGAAATAAGTGGTTGTTCGTTTCTTCCTTCTCATGACAAAAAAAACATTTGGAGACAATCTGGAAGCCTCTTTTTCTGAGTTTCTCCTGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAACATTTTACCCTGGTTGGAGTGTTGCCCTCCCATATTTGTTTCCATGGACCATGAATTCCCCCAGAGTGAGTCATGACCTCTCTCCTATACAGTCTACGTACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCCGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCGTTTAGATTTCTCCTGAAGGTGAGGTTCCATCCCTGACGGGACCAAATCTCAGAAATTTTAGCCTCAGGATTGGTGCAGAACGAGAAGAGATCAGGGAAAACCGTGTTTAGACAGTCTTGTCCAATCCACTTGTCCCTCCCAAAAAATACTTTGTTGCCCTCTCCCACCTTGACCACCAAATTCTTCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACCCCATATGTGCTATCTACTACATTAGACATCCACTCCTCGGTCTGCCCATACTTGTTGAGAATTGCTCTTCTCCATAATGCCTGATCTTCAACCACAAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCCTCAGATTTTTTATGCCAAGACCCCCTGTCTTCTTGCTTAGTAAGGCTGTCTGCCATTTAACTGAAGTGTATTTTTTCTTCTTCTTTGTTCCCCGACCATAGGAAATCCCGCCTCAATTTATCCAACCTCTCTTCTACCTTTGCTGGTAGAGGGAAAGGAGACATAACATATGTAGGCAACACATCTAGGACCGAATAGATCAGAGTGACTCTTCCTCCCAGAGATAGATAGTTTGTCTTCCAATTAGCCAACCTCTTCTCTGTCTTCTCAATGATTCAATCCCAAATCACCAGCTCCTTATGATTATTCCCCAAAGGCATTCCCAACATCTGAATATTTGCCACTTCCTTGACTTGGAAGATGCTGCTTTTCGCCCAGTTCACAGCCAGTCCGGAGACGGCCTCAAAAATCACCAAAACAACTTTAATGTAACTAACTTGTTCAGCCTTTGCATCGCAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATCTGCAAATTGAGTCCTGACTGATTACTAATGTTGAAACCCTTTATCCAGTCCTTCTGATTGGCCGCTCTAATCATACTGTTAAGACCCTCCATAGCTAAAATAAAAAGGAATAGGGAGAGAGGGTCTCCCTGTCGTAAACCTCTCTCAGAAGGAAAAAAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAATCCTATCCATTTAAGCCATTTGTCTCAAACCCCATCTGCCTCAGTATATTAAGTAGAAACTCCCAATTGACATGATCATATGCCTTTTCTACATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTCGAGTCTACACATTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATGAAGGCCATTTGGTGATTATTCACTAATTTGCTTATCACTTTCTTTAATCTCTCTGCCAACAGCTTGCCAAAAACCTTGTAAACTCCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCAAAGCTCCTGTCTTTTTTGGGATTAGAGCCACATAGGTGACGTTGAGACTCTTCTCTATTTCATGTCTTTCATCAAATTGTGTCACTGCATTCATGAAGTCTGCCTTCAGTATCTCCCAGAAGTTTTGGAAAAAACTCATCGGAAAGCCATCTGGTCCGGGGGCCTTATCACTAGTACATGCTTTTATGCAATTTAAAACTTCCTCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGCTTTCTGCTCCCTGTACTTTAATTTCTGGCCTCCATTGTTCTGTTTCTCTGTAAAGATTTTGATAGTAACTGATTATGGTTCCTATAATTTCTTCTGAATCTGTTACTGTAACCCCTTCAACCATCAGCTTATCTTATCAATGGTGTTGAATCTTTTATGAGCTGTAGCCATCCTGTGAAAATACTTGGTATTTCTGTCTCCGTGTTTGAGCCAGTGTATTCTTTCGATCCCTCTCCCCTTTTTCTTTCTACACCTGTCGTTATCCTCTCCCTCTTTTTCTTTGAACACCCCCCCCCCCCTCTTCCTCTTCTTCTTCCCCACCCTTCCTCCTCTACACCTTCCACCTTTCCCTTCCCCGCTCCTCCTTCAACAAATCTGTCAAAACTGTTGCGGGTCAGAATCTCTCTCAAAATTCTGAAATGTTGTTTTTTTAAAAAAATTGTAGAATTATCAAATGTTCTCAGAGTTAATTGAGCATTCATGTTTTTTCTTAAATTTTGATATCGGAAACATTATGCACTCTTCAAATAAATTATAGATTTTAAGTTGTACTTCATGTGAAATTAGTTGGTTTTTGAGTCATTATGATTGAAGTCCATCCTGTGCACTGCTTCAGTATGTTGTAATGTTAAAGCAATTCACTCTTATTATACAAGATGTTGTCGTATCAGTTCATATTTTTTCAGTTGGTTGTGGTGGTATATGGTGGAGGTGGGCAGAGGGTGGTGGAAAAAGTTGGAGTTAGAATAGGTCACTTCCATAATGTGTTGCCTCTTCTTTTTTTTTTTTGAGAAGGTAACGATTTGTATTATAAACCAATACTTATGTAGTACTGAAAGCCCCTTTACAAAAACGTATGAAATTCTAGGAACAAAAACAGCAAGCCTAGCATGATTCTAATACTTTTCTTTTTTTTGAAATAGATGATTCTAGTACTTCAAGGATTGCTTCTGCATCTACAGGGGAACTCTTTGTACACCAAAAACATAACAAAATACAATCTGTTTTGATCATCTGTAGGGATCTATCCTCAAAGCTTCTAGCATTCCTTTCTCTCCAAATGGTCCACCAGATGCATGCTGGAATTGTCCTCCAATAATTTCTGTTCTTTGCCTCAATTCCTGCATCCTCCCATCTTGAGAGAGTGTCAACAATCGTGCTAGGCATTGGTTATCCAGATTTGTCTCCAGGCCAATTGAGGGTTAGAGGAGTCCTGATCATGACCTTGTAACCTGAGCTCACTTTGAATCTTCCTTTGTTGTGCTCTGTCCACCGTAGGCAGTCCTCCCCTTCCTTCAAACCTTGAAATGATTCCAACCTTTTAAAGAATTCAACTAATCTACAAACTTCCCATTCATTTAAATTCCTTCTGATAGTTAGATCCCAACCTTGGGGAGACCACATTTCAGCCACTGTTCTGTCTTTATGCAGTGCTAAGTCAAAGATGTTGGGGAAGATCTCTGACAAATTTTGATTACCAAGCCATCTATCTTTCCAGAATTGTGTCCTGACACCATTGTGTACTGTTATAGTAGTATGATTCCTTAGGAAAGGCCACCAGTTCCTAATTGATCTCCAAACAGTAACACCATAGGGATTGGTTGCTTCCTTGGTGACCCATGAATCCATCTCTCCGTACTTCACTTTAATCACCTTGTTCCACATTGAGTGTGGTTCATGAGCATATCTCCACAACCATTTCAGCTTTAGAGCCTTCCTTTGGTTCTTCAATTTTTTTATGCCTAATCCTCGTTTTTTTCCTGTGATCATAAATCTCCATTTTACCAGATGGTATCCCTTTCTTTTCTTGTTTCCTTGCCAGAAAAAATCCTTTCTTAGTTTATCCAATCTCTATACTACTCCTACTCCTGCAGGTATTGGAAACAAAGTTAGCATGTACGTAGGAAGGGCATCCAAGACTGCATTTATCAGAGTGAGCCTGCCCCTTTTGATAAATATTGTGCTTTCAATCTGACTAACTTCTTCTCACATCTCTCCAAGACAGAATTTTTTAATTTCTTTGTACTGTGATTTTGCTCCCAATGGCATCCCAGGTAGATAGCAGGTAGTGCTCCCACCTCGCCTTCTAGCACTGAGGCCAAGAGCTCCATATTGGAGACCATGTTTATGGGATATAAATGGATCTTTCCCCATTGATGTGAAGACCTGACATACCTTCAAAAAGCACCAGAATTACCCTAGGGTATCTTAGTTGTTCCTCATCTGCATCACAAAAAATCAAAGTGTCATCTGCATATTTGTGTAACCTCCAAACTCTTCTCATTGTTTGTGGACACTTCAAATCCCGCGATCCACCTATTTGTTTTAGCTGTCTTGATCATGTTATTAAGTCCCTCCATGGCACGAATAAAGAGGAATGAAGATAAAGGATCCCCTTGTCTGATTCCTCTTTGGGCTTCAAAAAGACCTTCGGGAGCACCGTTAATGAGGACAGAAAACTTTACTGTTGAGATGCAAAACCGTATCCATCTAATCCACTTTTCTCCAAATCCCATTTTCCTGAGTATATTGAGAAGGAACCCCCAGTTAACATGATCATAAGCTTTCTCAGTGTCCAGTTTGCATAGGATGCCTGGTTTCTTTTGACCCACTCTAGAGTCTATTGCTTCATTTGCTATTAAGACCGCATCCATGATTTTTCTTCCTTTGATGAAAGCCATCTGTTGGGAGTCTACCAGCTTGTACATCGCCCTTTTGATTCTCTCTGTTAAAACTTTAGACAAGTTGTCATAGAAACTGCCTATCAAGCTTATTGGTCTGAAGTCTTTAAGTTCCTTTGCTCCTTTCTTCTTTGGGGTCAAGGCAATATAGGTAGCATTGAAACTCTTCTCAAACATTTCCTGCTCATAGAAATAATGGAAGGCCGCCATGATGTCATGCTTAAGAATTTCCCAACATTTGATGAAAAAACCCATAGTGTAACTATCAGGTCCTGGGGCTTTATCAATTACACATAACTTCAAGCATTTATAAACTTCCTGCTCCTCAAATTTGGCCTGTAGTTGTGATCTTTCTTCCTCTGATATTGAAGGACAATTCACTAAATTTCCGTCAGGTCTCCATCTTTATGTTTCAGTATACATTTTCTCATAAAACTTGATAATTTCCTCATTACTCTGTTTGGTTCTGTGATGGTCTTTCCCTCTACTTCCAATTGGTCAATATGGTTGCTTCTTTTATGGGAATTTGCAGAATTATGGAAGAATTTTGTATTGTTATCTCCTTCCTTCAACCACAAAATTCTAGAACTTTGTCTCCAAGCACATTCCTCATTTTTTATCAGTTCTTCGTACTCCATAAAGATCTCTGCCTTCAAAGTAGCCTCTTCCTCTGTCAATGCTCTTTTGTTCAGCAAAGAGGGATTTTTTAGCCTTTGAAGCTGTCACAGGGCTGGAAGCTTACCTTGCGAGGAGTCACCTGTTTAGTGTTGATATTGATGGTAATATTGAAGAGTTGGCTGAAATTGTGATGTAACGTTTCTTGTTGTATATTTGGGACTTCCTCTGAGTGTAAAAAACAATGATCAAATGATGGTCAATGAGTTCTAGACATGTGCAAAGAAACTGATCCCCCGGGAAAATAGTATTTATCTTTAAGTGGAAGGCGCACTCTAATCAACATAAGAAAGAGGGGATTGATCAAAAATCTCATCCTTTTCCTTGAAGGCTGATGTGATTTGTTTCCAAGATTCTAAAATGGAGGGGGATATGAAGGAAATAGTAAGAGAGTTATGGGGGGTCAGATGGATCAGTTATACTCAACTGGAGGCAAGTGATATTAGGGGAGGGATTATCCTAAAGTGGGACAACAGAATTTGGGAAGGGGAGATCAGCAGTATAGGCTCTTACTCTGTAACCTGTTATCTACAGTGATTACAGGTAATAATCAGGATTTCTCTTGGTATCTTACTGGAGTATATGCATTAAATGACATAATGGAAAGGGAAGAGGCATGGTGGGAAATTGCATCAGTTAGGGTCTCTGATTTCAGGTCCATGGGTTGTCTCTAGAGATTTCAACACGGTTAGACATCCATCAGAAAAGAAGAATTGCAACAGAATTAAAAAATCAATGACAGACTTCTCCGAATTCATTGAAGACATGGAGTTGATAGACTTCGATTTAACATGTGGTCAATTTTCCTGGAAACAGGGGGATAGACAGGCAACTGCTGCTAGACTAGATAGATTCCTAGTTTCAGAAGGATGGAACACACATTTAGGACTATAAGACAACTTGTTATTCTTAGATTGACCTCAGATCACACAACGCAGATGCTACAATGTGGTGAGTATGAACTCGATAAATCTTATTTCAAGTTTGAGAATTGGTAGCTTTAAACTGAAGATTTTGGTGACATTGGTGACAGAGTGAAGAACCGGTGGGAGTCTTTCCACTGCACAGGAAGGCCCGACTATATCTTGGCTTTCAAACTGAAAGTTATGAAAGGAGAAATTGAAGGAATGGAGTAAAATAGTCAAGGGTAATATGGAATTATAGAAACAGAACATACCAAACCATTTAACATAATTAAAGGAGCCAAGAACAGAGGATTTTGACAGAAGAAGAAATAACCAAGAGGCTAACTTTATCACTGGAATTTGAAGATATCGATAGGCATGAGGAGACTGCTTGGAGGCAAAGATCCTGGGTACTATGGGGCTAAATTAAGGAGATAGAAATACCAATTTTTTCACAGGACAACTAATGCACACAGGAGAATAAATACCATCGGTAAACTAGTAGGAAGAGGAGAAACTTTGACAGACCCAATCAACATCAAGAAAGAAATAATCTCTTTCTTGAGTTCTCTACTCAGAGACAGAGGAATGGATACCACACTCTGCTAGGAGCCTGCAGGAACTGTCCCATGGTCAGTGCAAAAGACAAACTAATGTTGATGGCCCCCTTTGAACCACAACAGATTCTGGACTGCTCTAGGACCAGATGGTTATACTCTGGCTTCTTCCACCAATGTTGGGCAGTGATTAGTTCAGATGTAGTAGCTGTAGTACAAAACTTTTTATAATGTAGGTTTCTTTCAGAAGAGATATAGTGCTATATTTGTAGCTCAACTCCAAAGAAAGTGGGTGCTATTGAATTAACTGATTCCAGCCAATCAACTTGATTGGGAGTGTCTACAAGATCTTTTCCATACTCTCAGCAGAAAGCTTGAAAAAAGTAACCCACAACTTGGTGCCAACAGATGGCCTTCATCAAAGGAAGACAAATCATGGATGCTAGCTACTATGATGGCAATTGAATGTGTTGAAGGAATGCAGAGGAGCAATTTGCCAGATATCTTATGCACACTAGATATCCAAGAAAACTTTTGGCCATCTTAACTGGAACTACCGTCTTGAACTATTACAGAAGATGGGATTTGGATCCAAGTGGATAAGGTGGATCAAACATTAAACCGGCAGAGTCAAATTCTCAGTATTGGTCAACAGAGCCCCCTACTGGTTTTTTCTCTTCCTACATAGGCTTGAGACAAGGAGCTATAGAAGGCATAAGCAATATGATATAGACTGCAAAATTAAATGGATGGGTCAAAGGTTCCCAAGCAATTCCCAGTACAGTGAACGACTTACAAATATCCACCTGCGGTATACTGTTGACACCCTGGTTTTCTGTGAGGCTTCCAAAGAACAAATTCTATTATTGAGAGTGATTGTCATCCTTTCTGAATCCATATATGCTTACACATTATTTGGATAAAGAGCTACATTTATCGTGTCAATGAAATGGCTGATATTCAATCCTTGGCTGATGTTTTAGGAGAGACATGAACACTTCCTACTAAATACTGGGGTATGCCTCTTGGTGCAAAGAGAAAATATGTGAGATATGGAATGAGGTGTAGAAAAATGTGAAAGAAGACTAACCAACTGGAGAAGTCAATATATCTTTATGGGAGGAAGATTGACTTTGAACAACAACATGCTTGATGCTTTACCCACATATATGATGTCTATCTTTCCCTCCCCTATATATGTGATAGAAAAGATAGACGCCTTAAGGAGGAATTTCTTCTGGCTAGACAATGATGACAAGAAAAAATTCATCTTGGGTAACTTTGACAAAAAAACAAGAAGAAAGGGGGAATGGGAGTCAGGAACATGTTGATGCACAATAGACGTCTGATTATGATGTGGTTGTGGAGATTTGATATAGATGACAACCAGCTTTGGAAACAAGTTGCTAAAGCTAAATATGGAAAAGAGGGGTTATGGACAACAAAGGTAGTGACTACTTTCTATGGATGCAACATCTGGAAATCTAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTGAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTATCTTGTGGGCCCAATGATGGTTGACTTTTTTTTCAAACTAGTGTCACGTAAGCTATAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAAAAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGGTTGAGGGGGTACTTGTGCATTTTTCCGGAAATCTATCCGAAACCTTTGGCCGATTTTCCAACAAAGAATAGGCTTCAAAATTGGGAATGGAATGAAAAATTTCCTGTTGGAATGACGTTTGGATTAGAGAAAACACACCCAATCATCTCTTTCCAAAATTATACAGCTTTTGTCAACAAGCATCAATAGCTGACATGTGGACAGACATGGATTAAAGACTTATTGACCCTGGGAATATAAGAAATCAATGTATTTAGGGAACCGAAACTTATCATCTGCCAAACTCAAAAGAAATGAAAAACGGGCAAGTATTGAGTCTCAGATTTAGAAGAATTTTTGAATAATTGAGAGATGGAAAAAATTGCAGATTTCCTCCACATTCTCAGTTAAATGGTTTTTTAGAAGAGGTGGATAGCTTAGTTTGACATTGTCACAGCAAAAGGGAAGTTTTTGTAAAGTCTATATCTCACTAGCTCCAACAATCAAGTGGGTTGTTCACTATGGAAGATGAGCTGGTGGTGAAAATTCCTTACAATGTAAGCTTGTTTCACATGGCTTTTTACTACAAAAAAGGTTCTGACAAATGAAATACTTGAGCAAGAGAGGAATGCAACTATACTCAGATGTTATCTCTTTGTAATGAACAAGTAGATATAGTTAACCACCATTTTTTTTGCACTGTAAATGGACATATCGACTATGGAAACTTTTGATCAACTTGAGGAAAATTTAGTGGGTGATGCCAAGAAGAATAAAGGGAGTGCTAAACTTAAGGAACAGTGATGGCAATGCAACTAGCAGGGAGGAGATATAGAAAGATCGTCTCAGCTTTATTTGGTGGTCAGTTTTGACTAAGAGAAATCAGAGATGTTTTGAGGGAAAACATTGTGACATCCAGAAGATCGTGATAAATTGCCTACCCCTCTATTATTTTTGGTGTAAACAGAAGTTGTTCATACAAACTGAAGATATTTTGTATGTTCACAGTTTATAATAGTTAAGTTTTAACAGATAAGACCCTTATGTAATCAGCCTACTTTTTTGTCGGACTAACAATTTCGTGATGTAGTATTCCTGTTGATATTAATTTTTACTTTTATGAAAAATTTACCAACTCAAAAATATCATTTGAATGATCATGATGCAATACGAAGAGCATATATTCAAAAGTCTTTTCCAATTTCAAAATTACAAGTTTCTTCAATGATGAGCTTTTGAGTAACTATTTGGTATTTATAGAAAAAAGAACATTTTTAATATTTCCAGTGAGTTTATGATGGACACGTCTTAGAAAATGAGAACTCTGAGGAGAGGTGCAACAAACAACAACATACCCAGTGAAACTCCACAAGGTTTAAGGAGGGTAGAATGTATGCAAACCTTACCACTATCTCGTGGAGGTAACGATATTGTTTTCTGAGAGACCCTCGGCTCAAGTGCAACAAATCCCGGTATAAAGGAGACAATGAAGATCGAGGAGAATTTGGCTAATAATGAGGAAATGATGCAAAAGTTTACCAGAGAGATTAATCATGTGATAATCCAAACTCCATAAACAACACACTAGGGTAGACTATTAAGAAAAAAACAAACAATTATAAAAATAAAAATAAAACAAAAGAAGTACAATAATGCAACTAGTACCATTGCAAACACCAGCCACCCTATGCACGACAACATTACACTACCTACTAATTTTCTACCCTAATACGTATCCTCCACACCCTCTTATCTAGGATCATATGGTCGGTAGCTTGAAACTGCATTATATCATGTCTTTCATATCTCCCTAATACTTCTTCGGCCTACCTCTGCCTCTCTTCATTCCTTCTATAAACAACCTCTTGTACCTCCCCATTGGTGCATCTATGCATTTCCTCTTCACATGTCCAAACCATCTGAGTCTCGCTTCTCTCATTTATCTACCACTGAGGCCCATCCCACCTTATTTTGAATATCCTCATTTCTAACTTTATCACTACCTAGTATTATGGGTGGGCGTTCAGTTCTTTGGTTCGGTTTTATCAAATTTCACTTCGGTTTTTCGATTTTCTGTTTTAGAAAAGTGTGCACCATATACCAAACCAAAGTAATTTGGTTCCATTCGGTTTAGTTAGGTGTTTTTAAATTGGTTTTTCGGTTCGAATGAAAAATAAAATGAGGACAAAGTCAAAGTGTAAGATAATTAAAATTTAAAAATATGTTGAGGGATCATGTGTCTCTCATGGAACGCTTGTTGTGCTAACTAAAAGACTAATCATCTTTGTCAAGAACATTGTGCCTTCAACTATTTCTCTAGAAAAACAAGGACGAAGACGGGTTCCTTAACATAACATACATTGATAAAAATATGTTTTGGTTATTCTTGAAAACTAATATTTGAAGTTAACTATTAATTATACATTTGTTTTGTTTTTTTTAATTTGTTCATGAATGATTTAATTGTTAGTTGAATTTTTATTATTAATTTGTATTTTTTTCAATAAAAGTTCGGTTCTTCGGTGCACTGAAGTTCTAAGACCCTTACACCGAACTAAGGAACCGAACTTTTGAAAAAATAACACCGACACCGAATCGAAAATTGAAGAACTGAATTAGTTCGGTTCGATTTTTCAGTTTCCCGGTATTTATGCCCACCTGTACCTAGTATGGCCACACATCCACGGACCAAACATCCATCGCAACATTCTCATCTCTGCAACTTGCATCTCTTGGACATGGGAGTTCTTAAGTAGCCAACATTCAGTTCCATACAAAAATGTTGGTCGAACCACCTTGCTACACTACTTACCTTTGAGTTCCAGTGGTACCCTTTTATCACACAAGACTCTAGAGGCAAGCCTTCACTTCATCCATGTCACACCGATACGATGTGTGATATCATCGTCGATGTCCTTGCTCCCTTGACGTATAGATCCAAGATACTTGAATATATCTCACTTGGGGATATTTTGTGTGTCAAGCCTCACTTCCATGCTTACCTCATGCATCACATCATTGAATTTGCACTCCACATATTCTGTCTTGGTCCAGCTCAACCTCAGCCCTTTAGCCTCCAAAGTATGTCTCCACATCTCTAACTTAACATTAACTCCAAAGGTGTAGTAGTGTGCTTGAATTTATTTTTCTAATATATGGCATTGTTATATTAATTTATTCACTTCTTTAAATGTCGACGGTGCTTATGGAAAATCATGTGTAAGTCACTGGAAGATAACTCTAGGTTCTTACAAGTTGTCACATTTTACTGAGTGCTATATATTTGGAGTGTATTGTTAAGCTTAAAAAGTTCTATTGTAAGATTTCACAGCATGATATTAACATTATCTTTTGGCATTTTATAGAGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAAGTTAAAGTTCTCCCACATCTCACTCTCAACTCTATGAATGACATTTTCTGACGGTTGATAATTATCCATCTGTACAGCTTTTCTCAAAATTAGGAATGTATGAAGCTGATTTGCTTGGTTTAGACTTGTGAATGTTCCATTCTGGTCTTGGAGCACGCTATACATCCTAAGGATGAGTGATAAATTAGGGATGTTAAATGATTTTAAACATTTTGAGACAATTTTTTATCTCGTAGGCAGTAGGAGGAACTTGAAAAAGATTCGAAGAGAAAAAAGCAAGAATTTCTTCATTTATCTGCAAATGCTCTGCTATGCCATATCTGCTGCATGGTGCTAATATGAACATTTGTCATTTAGAAGTCCAAGCGAAGTATTCGAATTAGAGAGTCAGTTAAACAAAATACCATTGCAAGTAGCATTTTTGACAGTTTATCATATGTCTATCAAATCAAGGAGAAAATATCCCGAATGCTCAAATTTTAGTTACCAAGAAAAGAAAAAAAATCTGGGTACATAAAAAAGAAAAAGCTCCAAATTTTTTAATATATCTTGTTGCTTGGTTTGAAAATGGTGTTGCACTGATGTTTTATATTCCTTCACATGTTCGACTAATTCTAGGCAGTTCTTTTTTCTTTTCATTTAGTTATGTAGTTTGTAATTTCTTTTTCTTAACTAGTCTATTGATTGTTGTACAGAGAGATACTTAGGCTTCTTCCTACTACAAAATAGATGATCAACTGCTGAAAAAATTCTCTTATTTTATCATTCAATTTCAGGTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAG</genome_strand>
        <mrna_strand>GACAATTACCATGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACAAACACTGTCGCCGGCGAGATATCACCGCAATTTTAGCTTAACTTGCGCGTTATTACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGAGTTTTGCTTCAATGGCTAGCTCTACCTAAAG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264840" ref_strand="+" ref_description="SGN-E264840 [cLEG-71-C6]">
      <seq>gacaattaccgtgtacacccctgcgcatgttaccaccagcgtcttaaattcccggctcctccgctctccgccacgacggacattgtcgacggcgagatatcaccgcaatttttgcttaacttgcgtgttaataccggagacaaggcgggaaagcagacgattggtcaacatagcccttggggtcttgcttcaatggctagctctacctaacgatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattagagaaatccttagagattgatcaacctaaatatggagattgccggaatatattgcgttctggtcctgcatcatctcttcgtgtcaatattcgagcagtagcacaatacgcagctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41529" stop="61843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41829" g_stop="42040" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="252" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="323" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60647" g_stop="60741" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="418" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61522" g_stop="61543" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="440" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E264840" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41829" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="60647" e_stop="60741"/>
          <exon e_start="61522" e_stop="61543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTCTAACGAACCAACGCCATAGGTCGTAGGAAGAAAACATTCGGTTTCATACTACAGTGCCCCATAACCAGATCCATATCAGGGGACCATAACATCATGCTGCAATCAGTGTGTCTATTTAGATCGAGTATTTCAATGATCTTTAAAGCAATACAGAGATATACTAGATTTAAAGGAGTAACAATGGATAGACACCCGAAGTTGGCACCACGGTCAGATAGACACTTTAAATGTGCCAGTGATCATTAGACACCTTTTCTTGATAGAAATTTGTATCATGAACATCTATCTGCGAGATCACCCGCTTGAGACTCACTCTTTGCTGATATCAGATGGTCAAATGAAATAATGACATCTGTAATCTATTTTTTTTAATAAAAATAGAATTAGAATAACTTATAAAATACAAATTTTATTTATTTACCTATACCATAAGATGGTAGATTTCCTAGGATCAATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACTTTATCAAAAAAAAAAAAACTATACTATAAGATGGAGTTTACATGCCAAAGCAGGCAGTGGGTCAACATGTCTACTTTGGCATGTAAGGTAGTTAGGTGATTTTAAATAAAATTAAATAACATGATTGGCTTAAAAACAAGTTAGAAACTTAAATGATAATGTCACTAAAACACAGGTGGTTAGAGAATCTTGAAAAAGGTAACGTTTGGCAGCTACTGAGATGCATTTGGCGGAGCTCAAATTCATTTAGGTGATTTCAAAAAAATTCTTGAGTTATTTGTTTGTATTTTTTTTAATTTGTTATATATTTGAAAATTGTGTATTATAAGAGGGAGTTTGCATGCCAAAGCAGGCAGCAGGTCAACATGTCTTCTTTGACATGTAAAGTTAGCTGGGTTATTTTAAATAAGATTTAATAACATGACTGGCTATAAAACAAGGTAGAAACTTAAATTACAATGACACTAAAACACATGTGGTTACATAATATTGAAAGGGGTAACTTTTGGCAGGTACTGAGACGCATTTGGTGGAGCTTAAATCCATTCAGGTGTTCTTAAAAGAATTCTTGACTTATTTGTTTGTATTTTTTTAATTAGCTAAATATTTAAAAATTTTCATAAAAAATATCATTAATCAGAATAATTAGCAACTTATAATATTTAAAAGACAAAAAATCGAATTGACTCTCGAATTCTATTAGTGCCACATAAATTGGAGAAGAGGAAGTAACATGTATTATCTGAAAATTAAGCTAAAAGTACTATCAATCTCAATAATTAATAATTCAAAATATTTAAAAATCATATAACAATTTAGTTGACTCTCCTAATTCCATCCATGCAGTATAAAATTGAGATAAATAGAGTAACACATATTGAGCATGTGTTTGCACGGGCTCTCCAGTAAATATGAGAAAAGCACTCTGTTCCTCTAATTTCTTTCATCAAATGTTTCAGAACTGAACCTCCGATCCCCCCCCCCCCCCCCTTTTTTTTTTTTAAGTTGTATTCTTCAGCATTAAGGTATGCTGGCTACCTCCAAAAAATTACAAGCTAAAACCATAATTACATTGATCCTAGGAAATCTACCAACTGTTCTGCTACTTCTATACCTTCTTCTTTACACCAAAAAATCAACATGTTAATGCGATTTTCTTTAACTTTCTGCATAGTGTTAGTAATATTCTCATGACACCTAAGATCTCTTTCTCTCCAAATAGTCCACCAGACACAAGCTGGTACTATAGACCACCATTTGTTTTATGTCTTGCTCCCCCCCCCCCCCCCCCTCATCCAGCAGCTCAAAAGATCAGCAGTATGTTCTGGCATCACCCAAGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGAACAGTAACCCTACAGTGTAGAAATAAGTGGTTGTTCGTTTCTTCCTTCTCATGACAAAAAAAACATTTGGAGACAATCTGGAAGCCTCTTTTTCTGAGTTTCTCCTGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAACATTTTACCCTGGTTGGAGTGTTGCCCTCCCATATTTGTTTCCATGGACCATGAATTCCCCCAGAGTGAGTCATGACCTCTCTCCTATACAGTCTACGTACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCCGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCGTTTAGATTTCTCCTGAAGGTGAGGTTCCATCCCTGACGGGACCAAATCTCAGAAATTTTAGCCTCAGGATTGGTGCAGAACGAGAAGAGATCAGGGAAAACCGTGTTTAGACAGTCTTGTCCAATCCACTTGTCCCTCCCAAAAAATACTTTGTTGCCCTCTCCCACCTTGACCACCAAATTCTTCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACCCCATATGTGCTATCTACTACATTAGACATCCACTCCTCGGTCTGCCCATACTTGTTGAGAATTGCTCTTCTCCATAATGCCTGATCTTCAACCACAAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCCTCAGATTTTTTATGCCAAGACCCCCTGTCTTCTTGCTTAGTAAGGCTGTCTGCCATTTAACTGAAGTGTATTTTTTCTTCTTCTTTGTTCCCCGACCATAGGAAATCCCGCCTCAATTTATCCAACCTCTCTTCTACCTTTGCTGGTAGAGGGAAAGGAGACATAACATATGTAGGCAACACATCTAGGACCGAATAGATCAGAGTGACTCTTCCTCCCAGAGATAGATAGTTTGTCTTCCAATTAGCCAACCTCTTCTCTGTCTTCTCAATGATTCAATCCCAAATCACCAGCTCCTTATGATTATTCCCCAAAGGCATTCCCAACATCTGAATATTTGCCACTTCCTTGACTTGGAAGATGCTGCTTTTCGCCCAGTTCACAGCCAGTCCGGAGACGGCCTCAAAAATCACCAAAACAACTTTAATGTAACTAACTTGTTCAGCCTTTGCATCGCAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATCTGCAAATTGAGTCCTGACTGATTACTAATGTTGAAACCCTTTATCCAGTCCTTCTGATTGGCCGCTCTAATCATACTGTTAAGACCCTCCATAGCTAAAATAAAAAGGAATAGGGAGAGAGGGTCTCCCTGTCGTAAACCTCTCTCAGAAGGAAAAAAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAATCCTATCCATTTAAGCCATTTGTCTCAAACCCCATCTGCCTCAGTATATTAAGTAGAAACTCCCAATTGACATGATCATATGCCTTTTCTACATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTCGAGTCTACACATTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATGAAGGCCATTTGGTGATTATTCACTAATTTGCTTATCACTTTCTTTAATCTCTCTGCCAACAGCTTGCCAAAAACCTTGTAAACTCCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCAAAGCTCCTGTCTTTTTTGGGATTAGAGCCACATAGGTGACGTTGAGACTCTTCTCTATTTCATGTCTTTCATCAAATTGTGTCACTGCATTCATGAAGTCTGCCTTCAGTATCTCCCAGAAGTTTTGGAAAAAACTCATCGGAAAGCCATCTGGTCCGGGGGCCTTATCACTAGTACATGCTTTTATGCAATTTAAAACTTCCTCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGCTTTCTGCTCCCTGTACTTTAATTTCTGGCCTCCATTGTTCTGTTTCTCTGTAAAGATTTTGATAGTAACTGATTATGGTTCCTATAATTTCTTCTGAATCTGTTACTGTAACCCCTTCAACCATCAGCTTATCTTATCAATGGTGTTGAATCTTTTATGAGCTGTAGCCATCCTGTGAAAATACTTGGTATTTCTGTCTCCGTGTTTGAGCCAGTGTATTCTTTCGATCCCTCTCCCCTTTTTCTTTCTACACCTGTCGTTATCCTCTCCCTCTTTTTCTTTGAACACCCCCCCCCCCCTCTTCCTCTTCTTCTTCCCCACCCTTCCTCCTCTACACCTTCCACCTTTCCCTTCCCCGCTCCTCCTTCAACAAATCTGTCAAAACTGTTGCGGGTCAGAATCTCTCTCAAAATTCTGAAATGTTGTTTTTTTAAAAAAATTGTAGAATTATCAAATGTTCTCAGAGTTAATTGAGCATTCATGTTTTTTCTTAAATTTTGATATCGGAAACATTATGCACTCTTCAAATAAATTATAGATTTTAAGTTGTACTTCATGTGAAATTAGTTGGTTTTTGAGTCATTATGATTGAAGTCCATCCTGTGCACTGCTTCAGTATGTTGTAATGTTAAAGCAATTCACTCTTATTATACAAGATGTTGTCGTATCAGTTCATATTTTTTCAGTTGGTTGTGGTGGTATATGGTGGAGGTGGGCAGAGGGTGGTGGAAAAAGTTGGAGTTAGAATAGGTCACTTCCATAATGTGTTGCCTCTTCTTTTTTTTTTTTGAGAAGGTAACGATTTGTATTATAAACCAATACTTATGTAGTACTGAAAGCCCCTTTACAAAAACGTATGAAATTCTAGGAACAAAAACAGCAAGCCTAGCATGATTCTAATACTTTTCTTTTTTTTGAAATAGATGATTCTAGTACTTCAAGGATTGCTTCTGCATCTACAGGGGAACTCTTTGTACACCAAAAACATAACAAAATACAATCTGTTTTGATCATCTGTAGGGATCTATCCTCAAAGCTTCTAGCATTCCTTTCTCTCCAAATGGTCCACCAGATGCATGCTGGAATTGTCCTCCAATAATTTCTGTTCTTTGCCTCAATTCCTGCATCCTCCCATCTTGAGAGAGTGTCAACAATCGTGCTAGGCATTGGTTATCCAGATTTGTCTCCAGGCCAATTGAGGGTTAGAGGAGTCCTGATCATGACCTTGTAACCTGAGCTCACTTTGAATCTTCCTTTGTTGTGCTCTGTCCACCGTAGGCAGTCCTCCCCTTCCTTCAAACCTTGAAATGATTCCAACCTTTTAAAGAATTCAACTAATCTACAAACTTCCCATTCATTTAAATTCCTTCTGATAGTTAGATCCCAACCTTGGGGAGACCACATTTCAGCCACTGTTCTGTCTTTATGCAGTGCTAAGTCAAAGATGTTGGGGAAGATCTCTGACAAATTTTGATTACCAAGCCATCTATCTTTCCAGAATTGTGTCCTGACACCATTGTGTACTGTTATAGTAGTATGATTCCTTAGGAAAGGCCACCAGTTCCTAATTGATCTCCAAACAGTAACACCATAGGGATTGGTTGCTTCCTTGGTGACCCATGAATCCATCTCTCCGTACTTCACTTTAATCACCTTGTTCCACATTGAGTGTGGTTCATGAGCATATCTCCACAACCATTTCAGCTTTAGAGCCTTCCTTTGGTTCTTCAATTTTTTTATGCCTAATCCTCGTTTTTTTCCTGTGATCATAAATCTCCATTTTACCAGATGGTATCCCTTTCTTTTCTTGTTTCCTTGCCAGAAAAAATCCTTTCTTAGTTTATCCAATCTCTATACTACTCCTACTCCTGCAGGTATTGGAAACAAAGTTAGCATGTACGTAGGAAGGGCATCCAAGACTGCATTTATCAGAGTGAGCCTGCCCCTTTTGATAAATATTGTGCTTTCAATCTGACTAACTTCTTCTCACATCTCTCCAAGACAGAATTTTTTAATTTCTTTGTACTGTGATTTTGCTCCCAATGGCATCCCAGGTAGATAGCAGGTAGTGCTCCCACCTCGCCTTCTAGCACTGAGGCCAAGAGCTCCATATTGGAGACCATGTTTATGGGATATAAATGGATCTTTCCCCATTGATGTGAAGACCTGACATACCTTCAAAAAGCACCAGAATTACCCTAGGGTATCTTAGTTGTTCCTCATCTGCATCACAAAAAATCAAAGTGTCATCTGCATATTTGTGTAACCTCCAAACTCTTCTCATTGTTTGTGGACACTTCAAATCCCGCGATCCACCTATTTGTTTTAGCTGTCTTGATCATGTTATTAAGTCCCTCCATGGCACGAATAAAGAGGAATGAAGATAAAGGATCCCCTTGTCTGATTCCTCTTTGGGCTTCAAAAAGACCTTCGGGAGCACCGTTAATGAGGACAGAAAACTTTACTGTTGAGATGCAAAACCGTATCCATCTAATCCACTTTTCTCCAAATCCCATTTTCCTGAGTATATTGAGAAGGAACCCCCAGTTAACATGATCATAAGCTTTCTCAGTGTCCAGTTTGCATAGGATGCCTGGTTTCTTTTGACCCACTCTAGAGTCTATTGCTTCATTTGCTATTAAGACCGCATCCATGATTTTTCTTCCTTTGATGAAAGCCATCTGTTGGGAGTCTACCAGCTTGTACATCGCCCTTTTGATTCTCTCTGTTAAAACTTTAGACAAGTTGTCATAGAAACTGCCTATCAAGCTTATTGGTCTGAAGTCTTTAAGTTCCTTTGCTCCTTTCTTCTTTGGGGTCAAGGCAATATAGGTAGCATTGAAACTCTTCTCAAACATTTCCTGCTCATAGAAATAATGGAAGGCCGCCATGATGTCATGCTTAAGAATTTCCCAACATTTGATGAAAAAACCCATAGTGTAACTATCAGGTCCTGGGGCTTTATCAATTACACATAACTTCAAGCATTTATAAACTTCCTGCTCCTCAAATTTGGCCTGTAGTTGTGATCTTTCTTCCTCTGATATTGAAGGACAATTCACTAAATTTCCGTCAGGTCTCCATCTTTATGTTTCAGTATACATTTTCTCATAAAACTTGATAATTTCCTCATTACTCTGTTTGGTTCTGTGATGGTCTTTCCCTCTACTTCCAATTGGTCAATATGGTTGCTTCTTTTATGGGAATTTGCAGAATTATGGAAGAATTTTGTATTGTTATCTCCTTCCTTCAACCACAAAATTCTAGAACTTTGTCTCCAAGCACATTCCTCATTTTTTATCAGTTCTTCGTACTCCATAAAGATCTCTGCCTTCAAAGTAGCCTCTTCCTCTGTCAATGCTCTTTTGTTCAGCAAAGAGGGATTTTTTAGCCTTTGAAGCTGTCACAGGGCTGGAAGCTTACCTTGCGAGGAGTCACCTGTTTAGTGTTGATATTGATGGTAATATTGAAGAGTTGGCTGAAATTGTGATGTAACGTTTCTTGTTGTATATTTGGGACTTCCTCTGAGTGTAAAAAACAATGATCAAATGATGGTCAATGAGTTCTAGACATGTGCAAAGAAACTGATCCCCCGGGAAAATAGTATTTATCTTTAAGTGGAAGGCGCACTCTAATCAACATAAGAAAGAGGGGATTGATCAAAAATCTCATCCTTTTCCTTGAAGGCTGATGTGATTTGTTTCCAAGATTCTAAAATGGAGGGGGATATGAAGGAAATAGTAAGAGAGTTATGGGGGGTCAGATGGATCAGTTATACTCAACTGGAGGCAAGTGATATTAGGGGAGGGATTATCCTAAAGTGGGACAACAGAATTTGGGAAGGGGAGATCAGCAGTATAGGCTCTTACTCTGTAACCTGTTATCTACAGTGATTACAGGTAATAATCAGGATTTCTCTTGGTATCTTACTGGAGTATATGCATTAAATGACATAATGGAAAGGGAAGAGGCATGGTGGGAAATTGCATCAGTTAGGGTCTCTGATTTCAGGTCCATGGGTTGTCTCTAGAGATTTCAACACGGTTAGACATCCATCAGAAAAGAAGAATTGCAACAGAATTAAAAAATCAATGACAGACTTCTCCGAATTCATTGAAGACATGGAGTTGATAGACTTCGATTTAACATGTGGTCAATTTTCCTGGAAACAGGGGGATAGACAGGCAACTGCTGCTAGACTAGATAGATTCCTAGTTTCAGAAGGATGGAACACACATTTAGGACTATAAGACAACTTGTTATTCTTAGATTGACCTCAGATCACACAACGCAGATGCTACAATGTGGTGAGTATGAACTCGATAAATCTTATTTCAAGTTTGAGAATTGGTAGCTTTAAACTGAAGATTTTGGTGACATTGGTGACAGAGTGAAGAACCGGTGGGAGTCTTTCCACTGCACAGGAAGGCCCGACTATATCTTGGCTTTCAAACTGAAAGTTATGAAAGGAGAAATTGAAGGAATGGAGTAAAATAGTCAAGGGTAATATGGAATTATAGAAACAGAACATACCAAACCATTTAACATAATTAAAGGAGCCAAGAACAGAGGATTTTGACAGAAGAAGAAATAACCAAGAGGCTAACTTTATCACTGGAATTTGAAGATATCGATAGGCATGAGGAGACTGCTTGGAGGCAAAGATCCTGGGTACTATGGGGCTAAATTAAGGAGATAGAAATACCAATTTTTTCACAGGACAACTAATGCACACAGGAGAATAAATACCATCGGTAAACTAGTAGGAAGAGGAGAAACTTTGACAGACCCAATCAACATCAAGAAAGAAATAATCTCTTTCTTGAGTTCTCTACTCAGAGACAGAGGAATGGATACCACACTCTGCTAGGAGCCTGCAGGAACTGTCCCATGGTCAGTGCAAAAGACAAACTAATGTTGATGGCCCCCTTTGAACCACAACAGATTCTGGACTGCTCTAGGACCAGATGGTTATACTCTGGCTTCTTCCACCAATGTTGGGCAGTGATTAGTTCAGATGTAGTAGCTGTAGTACAAAACTTTTTATAATGTAGGTTTCTTTCAGAAGAGATATAGTGCTATATTTGTAGCTCAACTCCAAAGAAAGTGGGTGCTATTGAATTAACTGATTCCAGCCAATCAACTTGATTGGGAGTGTCTACAAGATCTTTTCCATACTCTCAGCAGAAAGCTTGAAAAAAGTAACCCACAACTTGGTGCCAACAGATGGCCTTCATCAAAGGAAGACAAATCATGGATGCTAGCTACTATGATGGCAATTGAATGTGTTGAAGGAATGCAGAGGAGCAATTTGCCAGATATCTTATGCACACTAGATATCCAAGAAAACTTTTGGCCATCTTAACTGGAACTACCGTCTTGAACTATTACAGAAGATGGGATTTGGATCCAAGTGGATAAGGTGGATCAAACATTAAACCGGCAGAGTCAAATTCTCAGTATTGGTCAACAGAGCCCCCTACTGGTTTTTTCTCTTCCTACATAGGCTTGAGACAAGGAGCTATAGAAGGCATAAGCAATATGATATAGACTGCAAAATTAAATGGATGGGTCAAAGGTTCCCAAGCAATTCCCAGTACAGTGAACGACTTACAAATATCCACCTGCGGTATACTGTTGACACCCTGGTTTTCTGTGAGGCTTCCAAAGAACAAATTCTATTATTGAGAGTGATTGTCATCCTTTCTGAATCCATATATGCTTACACATTATTTGGATAAAGAGCTACATTTATCGTGTCAATGAAATGGCTGATATTCAATCCTTGGCTGATGTTTTAGGAGAGACATGAACACTTCCTACTAAATACTGGGGTATGCCTCTTGGTGCAAAGAGAAAATATGTGAGATATGGAATGAGGTGTAGAAAAATGTGAAAGAAGACTAACCAACTGGAGAAGTCAATATATCTTTATGGGAGGAAGATTGACTTTGAACAACAACATGCTTGATGCTTTACCCACATATATGATGTCTATCTTTCCCTCCCCTATATATGTGATAGAAAAGATAGACGCCTTAAGGAGGAATTTCTTCTGGCTAGACAATGATGACAAGAAAAAATTCATCTTGGGTAACTTTGACAAAAAAACAAGAAGAAAGGGGGAATGGGAGTCAGGAACATGTTGATGCACAATAGACGTCTGATTATGATGTGGTTGTGGAGATTTGATATAGATGACAACCAGCTTTGGAAACAAGTTGCTAAAGCTAAATATGGAAAAGAGGGGTTATGGACAACAAAGGTAGTGACTACTTTCTATGGATGCAACATCTGGAAATCTAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTGAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTATCTTGTGGGCCCAATGATGGTTGACTTTTTTTTCAAACTAGTGTCACGTAAGCTATAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAAAAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGGTTGAGGGGGTACTTGTGCATTTTTCCGGAAATCTATCCGAAACCTTTGGCCGATTTTCCAACAAAGAATAGGCTTCAAAATTGGGAATGGAATGAAAAATTTCCTGTTGGAATGACGTTTGGATTAGAGAAAACACACCCAATCATCTCTTTCCAAAATTATACAGCTTTTGTCAACAAGCATCAATAGCTGACATGTGGACAGACATGGATTAAAGACTTATTGACCCTGGGAATATAAGAAATCAATGTATTTAGGGAACCGAAACTTATCATCTGCCAAACTCAAAAGAAATGAAAAACGGGCAAGTATTGAGTCTCAGATTTAGAAGAATTTTTGAATAATTGAGAGATGGAAAAAATTGCAGATTTCCTCCACATTCTCAGTTAAATGGTTTTTTAGAAGAGGTGGATAGCTTAGTTTGACATTGTCACAGCAAAAGGGAAGTTTTTGTAAAGTCTATATCTCACTAGCTCCAACAATCAAGTGGGTTGTTCACTATGGAAGATGAGCTGGTGGTGAAAATTCCTTACAATGTAAGCTTGTTTCACATGGCTTTTTACTACAAAAAAGGTTCTGACAAATGAAATACTTGAGCAAGAGAGGAATGCAACTATACTCAGATGTTATCTCTTTGTAATGAACAAGTAGATATAGTTAACCACCATTTTTTTTGCACTGTAAATGGACATATCGACTATGGAAACTTTTGATCAACTTGAGGAAAATTTAGTGGGTGATGCCAAGAAGAATAAAGGGAGTGCTAAACTTAAGGAACAGTGATGGCAATGCAACTAGCAGGGAGGAGATATAGAAAGATCGTCTCAGCTTTATTTGGTGGTCAGTTTTGACTAAGAGAAATCAGAGATGTTTTGAGGGAAAACATTGTGACATCCAGAAGATCGTGATAAATTGCCTACCCCTCTATTATTTTTGGTGTAAACAGAAGTTGTTCATACAAACTGAAGATATTTTGTATGTTCACAGTTTATAATAGTTAAGTTTTAACAGATAAGACCCTTATGTAATCAGCCTACTTTTTTGTCGGACTAACAATTTCGTGATGTAGTATTCCTGTTGATATTAATTTTTACTTTTATGAAAAATTTACCAACTCAAAAATATCATTTGAATGATCATGATGCAATACGAAGAGCATATATTCAAAAGTCTTTTCCAATTTCAAAATTACAAGTTTCTTCAATGATGAGCTTTTGAGTAACTATTTGGTATTTATAGAAAAAAGAACATTTTTAATATTTCCAGTGAGTTTATGATGGACACGTCTTAGAAAATGAGAACTCTGAGGAGAGGTGCAACAAACAACAACATACCCAGTGAAACTCCACAAGGTTTAAGGAGGGTAGAATGTATGCAAACCTTACCACTATCTCGTGGAGGTAACGATATTGTTTTCTGAGAGACCCTCGGCTCAAGTGCAACAAATCCCGGTATAAAGGAGACAATGAAGATCGAGGAGAATTTGGCTAATAATGAGGAAATGATGCAAAAGTTTACCAGAGAGATTAATCATGTGATAATCCAAACTCCATAAACAACACACTAGGGTAGACTATTAAGAAAAAAACAAACAATTATAAAAATAAAAATAAAACAAAAGAAGTACAATAATGCAACTAGTACCATTGCAAACACCAGCCACCCTATGCACGACAACATTACACTACCTACTAATTTTCTACCCTAATACGTATCCTCCACACCCTCTTATCTAGGATCATATGGTCGGTAGCTTGAAACTGCATTATATCATGTCTTTCATATCTCCCTAATACTTCTTCGGCCTACCTCTGCCTCTCTTCATTCCTTCTATAAACAACCTCTTGTACCTCCCCATTGGTGCATCTATGCATTTCCTCTTCACATGTCCAAACCATCTGAGTCTCGCTTCTCTCATTTATCTACCACTGAGGCCCATCCCACCTTATTTTGAATATCCTCATTTCTAACTTTATCACTACCTAGTATTATGGGTGGGCGTTCAGTTCTTTGGTTCGGTTTTATCAAATTTCACTTCGGTTTTTCGATTTTCTGTTTTAGAAAAGTGTGCACCATATACCAAACCAAAGTAATTTGGTTCCATTCGGTTTAGTTAGGTGTTTTTAAATTGGTTTTTCGGTTCGAATGAAAAATAAAATGAGGACAAAGTCAAAGTGTAAGATAATTAAAATTTAAAAATATGTTGAGGGATCATGTGTCTCTCATGGAACGCTTGTTGTGCTAACTAAAAGACTAATCATCTTTGTCAAGAACATTGTGCCTTCAACTATTTCTCTAGAAAAACAAGGACGAAGACGGGTTCCTTAACATAACATACATTGATAAAAATATGTTTTGGTTATTCTTGAAAACTAATATTTGAAGTTAACTATTAATTATACATTTGTTTTGTTTTTTTTAATTTGTTCATGAATGATTTAATTGTTAGTTGAATTTTTATTATTAATTTGTATTTTTTTCAATAAAAGTTCGGTTCTTCGGTGCACTGAAGTTCTAAGACCCTTACACCGAACTAAGGAACCGAACTTTTGAAAAAATAACACCGACACCGAATCGAAAATTGAAGAACTGAATTAGTTCGGTTCGATTTTTCAGTTTCCCGGTATTTATGCCCACCTGTACCTAGTATGGCCACACATCCACGGACCAAACATCCATCGCAACATTCTCATCTCTGCAACTTGCATCTCTTGGACATGGGAGTTCTTAAGTAGCCAACATTCAGTTCCATACAAAAATGTTGGTCGAACCACCTTGCTACACTACTTACCTTTGAGTTCCAGTGGTACCCTTTTATCACACAAGACTCTAGAGGCAAGCCTTCACTTCATCCATGTCACACCGATACGATGTGTGATATCATCGTCGATGTCCTTGCTCCCTTGACGTATAGATCCAAGATACTTGAATATATCTCACTTGGGGATATTTTGTGTGTCAAGCCTCACTTCCATGCTTACCTCATGCATCACATCATTGAATTTGCACTCCACATATTCTGTCTTGGTCCAGCTCAACCTCAGCCCTTTAGCCTCCAAAGTATGTCTCCACATCTCTAACTTAACATTAACTCCAAAGGTGTAGTAGTGTGCTTGAATTTATTTTTCTAATATATGGCATTGTTATATTAATTTATTCACTTCTTTAAATGTCGACGGTGCTTATGGAAAATCATGTGTAAGTCACTGGAAGATAACTCTAGGTTCTTACAAGTTGTCACATTTTACTGAGTGCTATATATTTGGAGTGTATTGTTAAGCTTAAAAAGTTCTATTGTAAGATTTCACAGCATGATATTAACATTATCTTTTGGCATTTTATAGAGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAAGTTAAAGTTCTCCCACATCTCACTCTCAACTCTATGAATGACATTTTCTGACGGTTGATAATTATCCATCTGTACAGCTTTTCTCAAAATTAGGAATGTATGAAGCTGATTTGCTTGGTTTAGACTTGTGAATGTTCCATTCTGGTCTTGGAGCACGCTATACATCCTAAGGATGAGTGATAAATTAGGGATGTTAAATGATTTTAAACATTTTGAGACAATTTTTTATCTCGTAGGCAGTAGGAGGAACTTGAAAAAGATTCGAAGAGAAAAAAGCAAGAATTTCTTCATTTATCTGCAAATGCTCTGCTATGCCATATCTGCTGCATGGTGCTAATATGAACATTTGTCATTTAGAAGTCCAAGCGAAGTATTCGAATTAGAGAGTCAGTTAAACAAAATACCATTGCAAGTAGCATTTTTGACAGTTTATCATATGTCTATCAAATCAAGGAGAAAATATCCCGAATGCTCAAATTTTAGTTACCAAGAAAAGAAAAAAAATCTGGGTACATAAAAAAGAAAAAGCTCCAAATTTTTTAATATATCTTGTTGCTTGGTTTGAAAATGGTGTTGCACTGATGTTTTATATTCCTTCACATGTTCGACTAATTCTAGGCAGTTCTTTTTTCTTTTCATTTAGTTATGTAGTTTGTAATTTCTTTTTCTTAACTAGTCTATTGATTGTTGTACAGAGAGATACTTAGGCTTCTTCCTACTACAAAATAGATGATCAACTGCTGAAAAAATTCTCTTATTTTATCATTCAATTTCAGGTAGCACAATACGCAGCTGATG</genome_strand>
        <mrna_strand>GACAATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259965" ref_strand="+" ref_description="SGN-E259965 [cLEG-51-F23]">
      <seq>gacaattaccgtgtacacccctgcgcatgttaccaccagcgtcttaaattcccggctcctccgctctccgccacgacggacattgtcgacggcgagatatcaccgcaatttttgcttaacttgcgtgttaataccggagacaaggcgggaaagcagacgattggtcaacatagcccttggggtcttgcttcaatggctagctctacctaacgatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattanagaaatccttaaagattgatcaacctaaatatggagattgccggaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41529" stop="60996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41829" g_stop="42040" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="252" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="323" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46464" i_stop="46747" i_length="284">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.147" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46748" g_stop="46799" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="373" r_length="50" r_score="0.519"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E259965" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41829" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="46748" e_stop="46799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTC</genome_strand>
        <mrna_strand>GACAATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAN............................................................................................................................................................................................................................................................................................AGAAATCCTTAAAGATTGA-TCAACCTAAATATGGAGATTGCCGG-AATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342128" ref_strand="+" ref_description="SGN-E342128 [cTOF-10-C14]">
      <seq>aattaccgtgtacacccctgcgcatgttaccaccagcgtcttaaattcccggctcctccgctctccgccacgacggacattgtcgacggcgagatatcaccgcaatttttgcttaacttgcgtgttaataccggagacaaggcgggaaagcagacgattggtcaacatagcccttggggtcttgcttcaatggctagctctacctaacgatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattagagaaatccttagagattgatcaacctaaatatggagattgccggaatatattgcgttctggtcctgcatcatctcttcgtgtcaatattcgagcagtagcacaatacgcagctgatggtggcaatggtaaattagctttcagtgatgttgatgagtgtctgagtgcattggaaggacttgactcgttgcttttgcgtgcataagaaaggatccaggggcctcaattgactcaatgaaggcacaaattgctactgccttaaatgcattggacagtcttcttaaaactgtcccaactgatgtgcttgaaaggggaaagtctgtagctgattcatatttttttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41532" stop="62740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41832" g_stop="42040" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="249" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="320" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60647" g_stop="60741" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="415" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61522" g_stop="61589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="483" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61590" i_stop="62057" i_length="468">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62058" g_stop="62168" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="593" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62370" g_stop="62440" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="664" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E342128" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41832" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="60647" e_stop="60741"/>
          <exon e_start="61522" e_stop="61589"/>
          <exon e_start="62058" e_stop="62168"/>
          <exon e_start="62370" e_stop="62440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTCTAACGAACCAACGCCATAGGTCGTAGGAAGAAAACATTCGGTTTCATACTACAGTGCCCCATAACCAGATCCATATCAGGGGACCATAACATCATGCTGCAATCAGTGTGTCTATTTAGATCGAGTATTTCAATGATCTTTAAAGCAATACAGAGATATACTAGATTTAAAGGAGTAACAATGGATAGACACCCGAAGTTGGCACCACGGTCAGATAGACACTTTAAATGTGCCAGTGATCATTAGACACCTTTTCTTGATAGAAATTTGTATCATGAACATCTATCTGCGAGATCACCCGCTTGAGACTCACTCTTTGCTGATATCAGATGGTCAAATGAAATAATGACATCTGTAATCTATTTTTTTTAATAAAAATAGAATTAGAATAACTTATAAAATACAAATTTTATTTATTTACCTATACCATAAGATGGTAGATTTCCTAGGATCAATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACTTTATCAAAAAAAAAAAAACTATACTATAAGATGGAGTTTACATGCCAAAGCAGGCAGTGGGTCAACATGTCTACTTTGGCATGTAAGGTAGTTAGGTGATTTTAAATAAAATTAAATAACATGATTGGCTTAAAAACAAGTTAGAAACTTAAATGATAATGTCACTAAAACACAGGTGGTTAGAGAATCTTGAAAAAGGTAACGTTTGGCAGCTACTGAGATGCATTTGGCGGAGCTCAAATTCATTTAGGTGATTTCAAAAAAATTCTTGAGTTATTTGTTTGTATTTTTTTTAATTTGTTATATATTTGAAAATTGTGTATTATAAGAGGGAGTTTGCATGCCAAAGCAGGCAGCAGGTCAACATGTCTTCTTTGACATGTAAAGTTAGCTGGGTTATTTTAAATAAGATTTAATAACATGACTGGCTATAAAACAAGGTAGAAACTTAAATTACAATGACACTAAAACACATGTGGTTACATAATATTGAAAGGGGTAACTTTTGGCAGGTACTGAGACGCATTTGGTGGAGCTTAAATCCATTCAGGTGTTCTTAAAAGAATTCTTGACTTATTTGTTTGTATTTTTTTAATTAGCTAAATATTTAAAAATTTTCATAAAAAATATCATTAATCAGAATAATTAGCAACTTATAATATTTAAAAGACAAAAAATCGAATTGACTCTCGAATTCTATTAGTGCCACATAAATTGGAGAAGAGGAAGTAACATGTATTATCTGAAAATTAAGCTAAAAGTACTATCAATCTCAATAATTAATAATTCAAAATATTTAAAAATCATATAACAATTTAGTTGACTCTCCTAATTCCATCCATGCAGTATAAAATTGAGATAAATAGAGTAACACATATTGAGCATGTGTTTGCACGGGCTCTCCAGTAAATATGAGAAAAGCACTCTGTTCCTCTAATTTCTTTCATCAAATGTTTCAGAACTGAACCTCCGATCCCCCCCCCCCCCCCCTTTTTTTTTTTTAAGTTGTATTCTTCAGCATTAAGGTATGCTGGCTACCTCCAAAAAATTACAAGCTAAAACCATAATTACATTGATCCTAGGAAATCTACCAACTGTTCTGCTACTTCTATACCTTCTTCTTTACACCAAAAAATCAACATGTTAATGCGATTTTCTTTAACTTTCTGCATAGTGTTAGTAATATTCTCATGACACCTAAGATCTCTTTCTCTCCAAATAGTCCACCAGACACAAGCTGGTACTATAGACCACCATTTGTTTTATGTCTTGCTCCCCCCCCCCCCCCCCCTCATCCAGCAGCTCAAAAGATCAGCAGTATGTTCTGGCATCACCCAAGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGAACAGTAACCCTACAGTGTAGAAATAAGTGGTTGTTCGTTTCTTCCTTCTCATGACAAAAAAAACATTTGGAGACAATCTGGAAGCCTCTTTTTCTGAGTTTCTCCTGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAACATTTTACCCTGGTTGGAGTGTTGCCCTCCCATATTTGTTTCCATGGACCATGAATTCCCCCAGAGTGAGTCATGACCTCTCTCCTATACAGTCTACGTACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCCGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCGTTTAGATTTCTCCTGAAGGTGAGGTTCCATCCCTGACGGGACCAAATCTCAGAAATTTTAGCCTCAGGATTGGTGCAGAACGAGAAGAGATCAGGGAAAACCGTGTTTAGACAGTCTTGTCCAATCCACTTGTCCCTCCCAAAAAATACTTTGTTGCCCTCTCCCACCTTGACCACCAAATTCTTCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACCCCATATGTGCTATCTACTACATTAGACATCCACTCCTCGGTCTGCCCATACTTGTTGAGAATTGCTCTTCTCCATAATGCCTGATCTTCAACCACAAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCCTCAGATTTTTTATGCCAAGACCCCCTGTCTTCTTGCTTAGTAAGGCTGTCTGCCATTTAACTGAAGTGTATTTTTTCTTCTTCTTTGTTCCCCGACCATAGGAAATCCCGCCTCAATTTATCCAACCTCTCTTCTACCTTTGCTGGTAGAGGGAAAGGAGACATAACATATGTAGGCAACACATCTAGGACCGAATAGATCAGAGTGACTCTTCCTCCCAGAGATAGATAGTTTGTCTTCCAATTAGCCAACCTCTTCTCTGTCTTCTCAATGATTCAATCCCAAATCACCAGCTCCTTATGATTATTCCCCAAAGGCATTCCCAACATCTGAATATTTGCCACTTCCTTGACTTGGAAGATGCTGCTTTTCGCCCAGTTCACAGCCAGTCCGGAGACGGCCTCAAAAATCACCAAAACAACTTTAATGTAACTAACTTGTTCAGCCTTTGCATCGCAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATCTGCAAATTGAGTCCTGACTGATTACTAATGTTGAAACCCTTTATCCAGTCCTTCTGATTGGCCGCTCTAATCATACTGTTAAGACCCTCCATAGCTAAAATAAAAAGGAATAGGGAGAGAGGGTCTCCCTGTCGTAAACCTCTCTCAGAAGGAAAAAAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAATCCTATCCATTTAAGCCATTTGTCTCAAACCCCATCTGCCTCAGTATATTAAGTAGAAACTCCCAATTGACATGATCATATGCCTTTTCTACATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTCGAGTCTACACATTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATGAAGGCCATTTGGTGATTATTCACTAATTTGCTTATCACTTTCTTTAATCTCTCTGCCAACAGCTTGCCAAAAACCTTGTAAACTCCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCAAAGCTCCTGTCTTTTTTGGGATTAGAGCCACATAGGTGACGTTGAGACTCTTCTCTATTTCATGTCTTTCATCAAATTGTGTCACTGCATTCATGAAGTCTGCCTTCAGTATCTCCCAGAAGTTTTGGAAAAAACTCATCGGAAAGCCATCTGGTCCGGGGGCCTTATCACTAGTACATGCTTTTATGCAATTTAAAACTTCCTCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGCTTTCTGCTCCCTGTACTTTAATTTCTGGCCTCCATTGTTCTGTTTCTCTGTAAAGATTTTGATAGTAACTGATTATGGTTCCTATAATTTCTTCTGAATCTGTTACTGTAACCCCTTCAACCATCAGCTTATCTTATCAATGGTGTTGAATCTTTTATGAGCTGTAGCCATCCTGTGAAAATACTTGGTATTTCTGTCTCCGTGTTTGAGCCAGTGTATTCTTTCGATCCCTCTCCCCTTTTTCTTTCTACACCTGTCGTTATCCTCTCCCTCTTTTTCTTTGAACACCCCCCCCCCCCTCTTCCTCTTCTTCTTCCCCACCCTTCCTCCTCTACACCTTCCACCTTTCCCTTCCCCGCTCCTCCTTCAACAAATCTGTCAAAACTGTTGCGGGTCAGAATCTCTCTCAAAATTCTGAAATGTTGTTTTTTTAAAAAAATTGTAGAATTATCAAATGTTCTCAGAGTTAATTGAGCATTCATGTTTTTTCTTAAATTTTGATATCGGAAACATTATGCACTCTTCAAATAAATTATAGATTTTAAGTTGTACTTCATGTGAAATTAGTTGGTTTTTGAGTCATTATGATTGAAGTCCATCCTGTGCACTGCTTCAGTATGTTGTAATGTTAAAGCAATTCACTCTTATTATACAAGATGTTGTCGTATCAGTTCATATTTTTTCAGTTGGTTGTGGTGGTATATGGTGGAGGTGGGCAGAGGGTGGTGGAAAAAGTTGGAGTTAGAATAGGTCACTTCCATAATGTGTTGCCTCTTCTTTTTTTTTTTTGAGAAGGTAACGATTTGTATTATAAACCAATACTTATGTAGTACTGAAAGCCCCTTTACAAAAACGTATGAAATTCTAGGAACAAAAACAGCAAGCCTAGCATGATTCTAATACTTTTCTTTTTTTTGAAATAGATGATTCTAGTACTTCAAGGATTGCTTCTGCATCTACAGGGGAACTCTTTGTACACCAAAAACATAACAAAATACAATCTGTTTTGATCATCTGTAGGGATCTATCCTCAAAGCTTCTAGCATTCCTTTCTCTCCAAATGGTCCACCAGATGCATGCTGGAATTGTCCTCCAATAATTTCTGTTCTTTGCCTCAATTCCTGCATCCTCCCATCTTGAGAGAGTGTCAACAATCGTGCTAGGCATTGGTTATCCAGATTTGTCTCCAGGCCAATTGAGGGTTAGAGGAGTCCTGATCATGACCTTGTAACCTGAGCTCACTTTGAATCTTCCTTTGTTGTGCTCTGTCCACCGTAGGCAGTCCTCCCCTTCCTTCAAACCTTGAAATGATTCCAACCTTTTAAAGAATTCAACTAATCTACAAACTTCCCATTCATTTAAATTCCTTCTGATAGTTAGATCCCAACCTTGGGGAGACCACATTTCAGCCACTGTTCTGTCTTTATGCAGTGCTAAGTCAAAGATGTTGGGGAAGATCTCTGACAAATTTTGATTACCAAGCCATCTATCTTTCCAGAATTGTGTCCTGACACCATTGTGTACTGTTATAGTAGTATGATTCCTTAGGAAAGGCCACCAGTTCCTAATTGATCTCCAAACAGTAACACCATAGGGATTGGTTGCTTCCTTGGTGACCCATGAATCCATCTCTCCGTACTTCACTTTAATCACCTTGTTCCACATTGAGTGTGGTTCATGAGCATATCTCCACAACCATTTCAGCTTTAGAGCCTTCCTTTGGTTCTTCAATTTTTTTATGCCTAATCCTCGTTTTTTTCCTGTGATCATAAATCTCCATTTTACCAGATGGTATCCCTTTCTTTTCTTGTTTCCTTGCCAGAAAAAATCCTTTCTTAGTTTATCCAATCTCTATACTACTCCTACTCCTGCAGGTATTGGAAACAAAGTTAGCATGTACGTAGGAAGGGCATCCAAGACTGCATTTATCAGAGTGAGCCTGCCCCTTTTGATAAATATTGTGCTTTCAATCTGACTAACTTCTTCTCACATCTCTCCAAGACAGAATTTTTTAATTTCTTTGTACTGTGATTTTGCTCCCAATGGCATCCCAGGTAGATAGCAGGTAGTGCTCCCACCTCGCCTTCTAGCACTGAGGCCAAGAGCTCCATATTGGAGACCATGTTTATGGGATATAAATGGATCTTTCCCCATTGATGTGAAGACCTGACATACCTTCAAAAAGCACCAGAATTACCCTAGGGTATCTTAGTTGTTCCTCATCTGCATCACAAAAAATCAAAGTGTCATCTGCATATTTGTGTAACCTCCAAACTCTTCTCATTGTTTGTGGACACTTCAAATCCCGCGATCCACCTATTTGTTTTAGCTGTCTTGATCATGTTATTAAGTCCCTCCATGGCACGAATAAAGAGGAATGAAGATAAAGGATCCCCTTGTCTGATTCCTCTTTGGGCTTCAAAAAGACCTTCGGGAGCACCGTTAATGAGGACAGAAAACTTTACTGTTGAGATGCAAAACCGTATCCATCTAATCCACTTTTCTCCAAATCCCATTTTCCTGAGTATATTGAGAAGGAACCCCCAGTTAACATGATCATAAGCTTTCTCAGTGTCCAGTTTGCATAGGATGCCTGGTTTCTTTTGACCCACTCTAGAGTCTATTGCTTCATTTGCTATTAAGACCGCATCCATGATTTTTCTTCCTTTGATGAAAGCCATCTGTTGGGAGTCTACCAGCTTGTACATCGCCCTTTTGATTCTCTCTGTTAAAACTTTAGACAAGTTGTCATAGAAACTGCCTATCAAGCTTATTGGTCTGAAGTCTTTAAGTTCCTTTGCTCCTTTCTTCTTTGGGGTCAAGGCAATATAGGTAGCATTGAAACTCTTCTCAAACATTTCCTGCTCATAGAAATAATGGAAGGCCGCCATGATGTCATGCTTAAGAATTTCCCAACATTTGATGAAAAAACCCATAGTGTAACTATCAGGTCCTGGGGCTTTATCAATTACACATAACTTCAAGCATTTATAAACTTCCTGCTCCTCAAATTTGGCCTGTAGTTGTGATCTTTCTTCCTCTGATATTGAAGGACAATTCACTAAATTTCCGTCAGGTCTCCATCTTTATGTTTCAGTATACATTTTCTCATAAAACTTGATAATTTCCTCATTACTCTGTTTGGTTCTGTGATGGTCTTTCCCTCTACTTCCAATTGGTCAATATGGTTGCTTCTTTTATGGGAATTTGCAGAATTATGGAAGAATTTTGTATTGTTATCTCCTTCCTTCAACCACAAAATTCTAGAACTTTGTCTCCAAGCACATTCCTCATTTTTTATCAGTTCTTCGTACTCCATAAAGATCTCTGCCTTCAAAGTAGCCTCTTCCTCTGTCAATGCTCTTTTGTTCAGCAAAGAGGGATTTTTTAGCCTTTGAAGCTGTCACAGGGCTGGAAGCTTACCTTGCGAGGAGTCACCTGTTTAGTGTTGATATTGATGGTAATATTGAAGAGTTGGCTGAAATTGTGATGTAACGTTTCTTGTTGTATATTTGGGACTTCCTCTGAGTGTAAAAAACAATGATCAAATGATGGTCAATGAGTTCTAGACATGTGCAAAGAAACTGATCCCCCGGGAAAATAGTATTTATCTTTAAGTGGAAGGCGCACTCTAATCAACATAAGAAAGAGGGGATTGATCAAAAATCTCATCCTTTTCCTTGAAGGCTGATGTGATTTGTTTCCAAGATTCTAAAATGGAGGGGGATATGAAGGAAATAGTAAGAGAGTTATGGGGGGTCAGATGGATCAGTTATACTCAACTGGAGGCAAGTGATATTAGGGGAGGGATTATCCTAAAGTGGGACAACAGAATTTGGGAAGGGGAGATCAGCAGTATAGGCTCTTACTCTGTAACCTGTTATCTACAGTGATTACAGGTAATAATCAGGATTTCTCTTGGTATCTTACTGGAGTATATGCATTAAATGACATAATGGAAAGGGAAGAGGCATGGTGGGAAATTGCATCAGTTAGGGTCTCTGATTTCAGGTCCATGGGTTGTCTCTAGAGATTTCAACACGGTTAGACATCCATCAGAAAAGAAGAATTGCAACAGAATTAAAAAATCAATGACAGACTTCTCCGAATTCATTGAAGACATGGAGTTGATAGACTTCGATTTAACATGTGGTCAATTTTCCTGGAAACAGGGGGATAGACAGGCAACTGCTGCTAGACTAGATAGATTCCTAGTTTCAGAAGGATGGAACACACATTTAGGACTATAAGACAACTTGTTATTCTTAGATTGACCTCAGATCACACAACGCAGATGCTACAATGTGGTGAGTATGAACTCGATAAATCTTATTTCAAGTTTGAGAATTGGTAGCTTTAAACTGAAGATTTTGGTGACATTGGTGACAGAGTGAAGAACCGGTGGGAGTCTTTCCACTGCACAGGAAGGCCCGACTATATCTTGGCTTTCAAACTGAAAGTTATGAAAGGAGAAATTGAAGGAATGGAGTAAAATAGTCAAGGGTAATATGGAATTATAGAAACAGAACATACCAAACCATTTAACATAATTAAAGGAGCCAAGAACAGAGGATTTTGACAGAAGAAGAAATAACCAAGAGGCTAACTTTATCACTGGAATTTGAAGATATCGATAGGCATGAGGAGACTGCTTGGAGGCAAAGATCCTGGGTACTATGGGGCTAAATTAAGGAGATAGAAATACCAATTTTTTCACAGGACAACTAATGCACACAGGAGAATAAATACCATCGGTAAACTAGTAGGAAGAGGAGAAACTTTGACAGACCCAATCAACATCAAGAAAGAAATAATCTCTTTCTTGAGTTCTCTACTCAGAGACAGAGGAATGGATACCACACTCTGCTAGGAGCCTGCAGGAACTGTCCCATGGTCAGTGCAAAAGACAAACTAATGTTGATGGCCCCCTTTGAACCACAACAGATTCTGGACTGCTCTAGGACCAGATGGTTATACTCTGGCTTCTTCCACCAATGTTGGGCAGTGATTAGTTCAGATGTAGTAGCTGTAGTACAAAACTTTTTATAATGTAGGTTTCTTTCAGAAGAGATATAGTGCTATATTTGTAGCTCAACTCCAAAGAAAGTGGGTGCTATTGAATTAACTGATTCCAGCCAATCAACTTGATTGGGAGTGTCTACAAGATCTTTTCCATACTCTCAGCAGAAAGCTTGAAAAAAGTAACCCACAACTTGGTGCCAACAGATGGCCTTCATCAAAGGAAGACAAATCATGGATGCTAGCTACTATGATGGCAATTGAATGTGTTGAAGGAATGCAGAGGAGCAATTTGCCAGATATCTTATGCACACTAGATATCCAAGAAAACTTTTGGCCATCTTAACTGGAACTACCGTCTTGAACTATTACAGAAGATGGGATTTGGATCCAAGTGGATAAGGTGGATCAAACATTAAACCGGCAGAGTCAAATTCTCAGTATTGGTCAACAGAGCCCCCTACTGGTTTTTTCTCTTCCTACATAGGCTTGAGACAAGGAGCTATAGAAGGCATAAGCAATATGATATAGACTGCAAAATTAAATGGATGGGTCAAAGGTTCCCAAGCAATTCCCAGTACAGTGAACGACTTACAAATATCCACCTGCGGTATACTGTTGACACCCTGGTTTTCTGTGAGGCTTCCAAAGAACAAATTCTATTATTGAGAGTGATTGTCATCCTTTCTGAATCCATATATGCTTACACATTATTTGGATAAAGAGCTACATTTATCGTGTCAATGAAATGGCTGATATTCAATCCTTGGCTGATGTTTTAGGAGAGACATGAACACTTCCTACTAAATACTGGGGTATGCCTCTTGGTGCAAAGAGAAAATATGTGAGATATGGAATGAGGTGTAGAAAAATGTGAAAGAAGACTAACCAACTGGAGAAGTCAATATATCTTTATGGGAGGAAGATTGACTTTGAACAACAACATGCTTGATGCTTTACCCACATATATGATGTCTATCTTTCCCTCCCCTATATATGTGATAGAAAAGATAGACGCCTTAAGGAGGAATTTCTTCTGGCTAGACAATGATGACAAGAAAAAATTCATCTTGGGTAACTTTGACAAAAAAACAAGAAGAAAGGGGGAATGGGAGTCAGGAACATGTTGATGCACAATAGACGTCTGATTATGATGTGGTTGTGGAGATTTGATATAGATGACAACCAGCTTTGGAAACAAGTTGCTAAAGCTAAATATGGAAAAGAGGGGTTATGGACAACAAAGGTAGTGACTACTTTCTATGGATGCAACATCTGGAAATCTAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTGAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTATCTTGTGGGCCCAATGATGGTTGACTTTTTTTTCAAACTAGTGTCACGTAAGCTATAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAAAAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGGTTGAGGGGGTACTTGTGCATTTTTCCGGAAATCTATCCGAAACCTTTGGCCGATTTTCCAACAAAGAATAGGCTTCAAAATTGGGAATGGAATGAAAAATTTCCTGTTGGAATGACGTTTGGATTAGAGAAAACACACCCAATCATCTCTTTCCAAAATTATACAGCTTTTGTCAACAAGCATCAATAGCTGACATGTGGACAGACATGGATTAAAGACTTATTGACCCTGGGAATATAAGAAATCAATGTATTTAGGGAACCGAAACTTATCATCTGCCAAACTCAAAAGAAATGAAAAACGGGCAAGTATTGAGTCTCAGATTTAGAAGAATTTTTGAATAATTGAGAGATGGAAAAAATTGCAGATTTCCTCCACATTCTCAGTTAAATGGTTTTTTAGAAGAGGTGGATAGCTTAGTTTGACATTGTCACAGCAAAAGGGAAGTTTTTGTAAAGTCTATATCTCACTAGCTCCAACAATCAAGTGGGTTGTTCACTATGGAAGATGAGCTGGTGGTGAAAATTCCTTACAATGTAAGCTTGTTTCACATGGCTTTTTACTACAAAAAAGGTTCTGACAAATGAAATACTTGAGCAAGAGAGGAATGCAACTATACTCAGATGTTATCTCTTTGTAATGAACAAGTAGATATAGTTAACCACCATTTTTTTTGCACTGTAAATGGACATATCGACTATGGAAACTTTTGATCAACTTGAGGAAAATTTAGTGGGTGATGCCAAGAAGAATAAAGGGAGTGCTAAACTTAAGGAACAGTGATGGCAATGCAACTAGCAGGGAGGAGATATAGAAAGATCGTCTCAGCTTTATTTGGTGGTCAGTTTTGACTAAGAGAAATCAGAGATGTTTTGAGGGAAAACATTGTGACATCCAGAAGATCGTGATAAATTGCCTACCCCTCTATTATTTTTGGTGTAAACAGAAGTTGTTCATACAAACTGAAGATATTTTGTATGTTCACAGTTTATAATAGTTAAGTTTTAACAGATAAGACCCTTATGTAATCAGCCTACTTTTTTGTCGGACTAACAATTTCGTGATGTAGTATTCCTGTTGATATTAATTTTTACTTTTATGAAAAATTTACCAACTCAAAAATATCATTTGAATGATCATGATGCAATACGAAGAGCATATATTCAAAAGTCTTTTCCAATTTCAAAATTACAAGTTTCTTCAATGATGAGCTTTTGAGTAACTATTTGGTATTTATAGAAAAAAGAACATTTTTAATATTTCCAGTGAGTTTATGATGGACACGTCTTAGAAAATGAGAACTCTGAGGAGAGGTGCAACAAACAACAACATACCCAGTGAAACTCCACAAGGTTTAAGGAGGGTAGAATGTATGCAAACCTTACCACTATCTCGTGGAGGTAACGATATTGTTTTCTGAGAGACCCTCGGCTCAAGTGCAACAAATCCCGGTATAAAGGAGACAATGAAGATCGAGGAGAATTTGGCTAATAATGAGGAAATGATGCAAAAGTTTACCAGAGAGATTAATCATGTGATAATCCAAACTCCATAAACAACACACTAGGGTAGACTATTAAGAAAAAAACAAACAATTATAAAAATAAAAATAAAACAAAAGAAGTACAATAATGCAACTAGTACCATTGCAAACACCAGCCACCCTATGCACGACAACATTACACTACCTACTAATTTTCTACCCTAATACGTATCCTCCACACCCTCTTATCTAGGATCATATGGTCGGTAGCTTGAAACTGCATTATATCATGTCTTTCATATCTCCCTAATACTTCTTCGGCCTACCTCTGCCTCTCTTCATTCCTTCTATAAACAACCTCTTGTACCTCCCCATTGGTGCATCTATGCATTTCCTCTTCACATGTCCAAACCATCTGAGTCTCGCTTCTCTCATTTATCTACCACTGAGGCCCATCCCACCTTATTTTGAATATCCTCATTTCTAACTTTATCACTACCTAGTATTATGGGTGGGCGTTCAGTTCTTTGGTTCGGTTTTATCAAATTTCACTTCGGTTTTTCGATTTTCTGTTTTAGAAAAGTGTGCACCATATACCAAACCAAAGTAATTTGGTTCCATTCGGTTTAGTTAGGTGTTTTTAAATTGGTTTTTCGGTTCGAATGAAAAATAAAATGAGGACAAAGTCAAAGTGTAAGATAATTAAAATTTAAAAATATGTTGAGGGATCATGTGTCTCTCATGGAACGCTTGTTGTGCTAACTAAAAGACTAATCATCTTTGTCAAGAACATTGTGCCTTCAACTATTTCTCTAGAAAAACAAGGACGAAGACGGGTTCCTTAACATAACATACATTGATAAAAATATGTTTTGGTTATTCTTGAAAACTAATATTTGAAGTTAACTATTAATTATACATTTGTTTTGTTTTTTTTAATTTGTTCATGAATGATTTAATTGTTAGTTGAATTTTTATTATTAATTTGTATTTTTTTCAATAAAAGTTCGGTTCTTCGGTGCACTGAAGTTCTAAGACCCTTACACCGAACTAAGGAACCGAACTTTTGAAAAAATAACACCGACACCGAATCGAAAATTGAAGAACTGAATTAGTTCGGTTCGATTTTTCAGTTTCCCGGTATTTATGCCCACCTGTACCTAGTATGGCCACACATCCACGGACCAAACATCCATCGCAACATTCTCATCTCTGCAACTTGCATCTCTTGGACATGGGAGTTCTTAAGTAGCCAACATTCAGTTCCATACAAAAATGTTGGTCGAACCACCTTGCTACACTACTTACCTTTGAGTTCCAGTGGTACCCTTTTATCACACAAGACTCTAGAGGCAAGCCTTCACTTCATCCATGTCACACCGATACGATGTGTGATATCATCGTCGATGTCCTTGCTCCCTTGACGTATAGATCCAAGATACTTGAATATATCTCACTTGGGGATATTTTGTGTGTCAAGCCTCACTTCCATGCTTACCTCATGCATCACATCATTGAATTTGCACTCCACATATTCTGTCTTGGTCCAGCTCAACCTCAGCCCTTTAGCCTCCAAAGTATGTCTCCACATCTCTAACTTAACATTAACTCCAAAGGTGTAGTAGTGTGCTTGAATTTATTTTTCTAATATATGGCATTGTTATATTAATTTATTCACTTCTTTAAATGTCGACGGTGCTTATGGAAAATCATGTGTAAGTCACTGGAAGATAACTCTAGGTTCTTACAAGTTGTCACATTTTACTGAGTGCTATATATTTGGAGTGTATTGTTAAGCTTAAAAAGTTCTATTGTAAGATTTCACAGCATGATATTAACATTATCTTTTGGCATTTTATAGAGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAAGTTAAAGTTCTCCCACATCTCACTCTCAACTCTATGAATGACATTTTCTGACGGTTGATAATTATCCATCTGTACAGCTTTTCTCAAAATTAGGAATGTATGAAGCTGATTTGCTTGGTTTAGACTTGTGAATGTTCCATTCTGGTCTTGGAGCACGCTATACATCCTAAGGATGAGTGATAAATTAGGGATGTTAAATGATTTTAAACATTTTGAGACAATTTTTTATCTCGTAGGCAGTAGGAGGAACTTGAAAAAGATTCGAAGAGAAAAAAGCAAGAATTTCTTCATTTATCTGCAAATGCTCTGCTATGCCATATCTGCTGCATGGTGCTAATATGAACATTTGTCATTTAGAAGTCCAAGCGAAGTATTCGAATTAGAGAGTCAGTTAAACAAAATACCATTGCAAGTAGCATTTTTGACAGTTTATCATATGTCTATCAAATCAAGGAGAAAATATCCCGAATGCTCAAATTTTAGTTACCAAGAAAAGAAAAAAAATCTGGGTACATAAAAAAGAAAAAGCTCCAAATTTTTTAATATATCTTGTTGCTTGGTTTGAAAATGGTGTTGCACTGATGTTTTATATTCCTTCACATGTTCGACTAATTCTAGGCAGTTCTTTTTTCTTTTCATTTAGTTATGTAGTTTGTAATTTCTTTTTCTTAACTAGTCTATTGATTGTTGTACAGAGAGATACTTAGGCTTCTTCCTACTACAAAATAGATGATCAACTGCTGAAAAAATTCTCTTATTTTATCATTCAATTTCAGGTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAGGTACTACGTCGTACATTCACCTGTCAACCTGAACAATGTTGTTTAACTATAACGTAACACGGTAACATTATAGCTACGCAGTTAAGGCTGTATATTAAAATTTGTTGTACCTGCACAGGATGATCAGTCTATTGGGTAGATGTAAGAAAATTTTAGAATGTCCTTGGAACACTGATGATTTCTCTAGGTCAGAGAGAGTTCCATAATTGATTTTGTTCCTGTAAGCTTCCTGATTTATTTTCTTGAACAAGGTTGGCTGCAAAAGATCATGTCACGAATATGATATTATTATTCTACACTGCCAGATGGAACACCTTCAAATTGATGACAAGAGGAGCATGCTTAGTATGTACATCAGTAAATAAAAGGACCAATTTTAACCAAAATGCAAATTGGACCATCATTGCATGTCAACTTTGTTTTTTTAGTCACACATGATGCTATTTGTGTTTTTAATCTTTCACGCAGTGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAGGTCATACTTCCATCATTCTGCCTCAGTTATAATTCCTATATGAATTCCCTACATCCTTTCTTCTCTATCCAAATAATAAATAGCGTCTTTCAACCTCAGTGATTCTTTATATCTCAATTATCCCTGCAATAGTTATCTAGTTTAATCTGAACGAGTGGCGGCTTTTGCCTAGTAGTTATTTTTTACCTTTTCTTTCTTCAGTCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTG</genome_strand>
        <mrna_strand>AATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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...............................................................................................................................................................................................................................................TGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCAT-AAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAG.........................................................................................................................................................................................................TCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAGGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320743" ref_strand="+" ref_description="SGN-E320743 [cTOB-27-J6]">
      <seq>attaccgtgtacacccctgcgcatgttaccaccagcgtcttaaattcccggctcctccgctctccgccacgacggacattgtcgacggcgagatatcaccgcaatttttgcttaacttgcgtgttaataccggagacaaggcgggaaagcagacgattggtcaacatagcccttggggtcttgcttcaatggctagctctacctaacgatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattagagaaatccttagagattgatcaacctaaatatggagattgccggaatatattgcgttctggtcctgcatcatctcttcgtgtcaatattcgagcagtagcacaatacgcagctgatggtggcaatggtaaattagctttcagtgatgttgatgagtgtctgagtgcattggaaggacttgactcgttgcttttgcgtgcatcaagaaaggatccaggggcctcaattgactcaatgaaggcacaaattgctactgccttnaatgcattggacagtcttcttaaaactgtcccaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41533" stop="62694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41833" g_stop="42040" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="248" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="319" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60647" g_stop="60741" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="414" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61522" g_stop="61589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="482" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61590" i_stop="62057" i_length="468">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62058" g_stop="62168" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="593" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.673" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62370" g_stop="62394" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="618" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E320743" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41833" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="60647" e_stop="60741"/>
          <exon e_start="61522" e_stop="61589"/>
          <exon e_start="62058" e_stop="62168"/>
          <exon e_start="62370" e_stop="62394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTCTAACGAACCAACGCCATAGGTCGTAGGAAGAAAACATTCGGTTTCATACTACAGTGCCCCATAACCAGATCCATATCAGGGGACCATAACATCATGCTGCAATCAGTGTGTCTATTTAGATCGAGTATTTCAATGATCTTTAAAGCAATACAGAGATATACTAGATTTAAAGGAGTAACAATGGATAGACACCCGAAGTTGGCACCACGGTCAGATAGACACTTTAAATGTGCCAGTGATCATTAGACACCTTTTCTTGATAGAAATTTGTATCATGAACATCTATCTGCGAGATCACCCGCTTGAGACTCACTCTTTGCTGATATCAGATGGTCAAATGAAATAATGACATCTGTAATCTATTTTTTTTAATAAAAATAGAATTAGAATAACTTATAAAATACAAATTTTATTTATTTACCTATACCATAAGATGGTAGATTTCCTAGGATCAATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACTTTATCAAAAAAAAAAAAACTATACTATAAGATGGAGTTTACATGCCAAAGCAGGCAGTGGGTCAACATGTCTACTTTGGCATGTAAGGTAGTTAGGTGATTTTAAATAAAATTAAATAACATGATTGGCTTAAAAACAAGTTAGAAACTTAAATGATAATGTCACTAAAACACAGGTGGTTAGAGAATCTTGAAAAAGGTAACGTTTGGCAGCTACTGAGATGCATTTGGCGGAGCTCAAATTCATTTAGGTGATTTCAAAAAAATTCTTGAGTTATTTGTTTGTATTTTTTTTAATTTGTTATATATTTGAAAATTGTGTATTATAAGAGGGAGTTTGCATGCCAAAGCAGGCAGCAGGTCAACATGTCTTCTTTGACATGTAAAGTTAGCTGGGTTATTTTAAATAAGATTTAATAACATGACTGGCTATAAAACAAGGTAGAAACTTAAATTACAATGACACTAAAACACATGTGGTTACATAATATTGAAAGGGGTAACTTTTGGCAGGTACTGAGACGCATTTGGTGGAGCTTAAATCCATTCAGGTGTTCTTAAAAGAATTCTTGACTTATTTGTTTGTATTTTTTTAATTAGCTAAATATTTAAAAATTTTCATAAAAAATATCATTAATCAGAATAATTAGCAACTTATAATATTTAAAAGACAAAAAATCGAATTGACTCTCGAATTCTATTAGTGCCACATAAATTGGAGAAGAGGAAGTAACATGTATTATCTGAAAATTAAGCTAAAAGTACTATCAATCTCAATAATTAATAATTCAAAATATTTAAAAATCATATAACAATTTAGTTGACTCTCCTAATTCCATCCATGCAGTATAAAATTGAGATAAATAGAGTAACACATATTGAGCATGTGTTTGCACGGGCTCTCCAGTAAATATGAGAAAAGCACTCTGTTCCTCTAATTTCTTTCATCAAATGTTTCAGAACTGAACCTCCGATCCCCCCCCCCCCCCCCTTTTTTTTTTTTAAGTTGTATTCTTCAGCATTAAGGTATGCTGGCTACCTCCAAAAAATTACAAGCTAAAACCATAATTACATTGATCCTAGGAAATCTACCAACTGTTCTGCTACTTCTATACCTTCTTCTTTACACCAAAAAATCAACATGTTAATGCGATTTTCTTTAACTTTCTGCATAGTGTTAGTAATATTCTCATGACACCTAAGATCTCTTTCTCTCCAAATAGTCCACCAGACACAAGCTGGTACTATAGACCACCATTTGTTTTATGTCTTGCTCCCCCCCCCCCCCCCCCTCATCCAGCAGCTCAAAAGATCAGCAGTATGTTCTGGCATCACCCAAGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGAACAGTAACCCTACAGTGTAGAAATAAGTGGTTGTTCGTTTCTTCCTTCTCATGACAAAAAAAACATTTGGAGACAATCTGGAAGCCTCTTTTTCTGAGTTTCTCCTGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAACATTTTACCCTGGTTGGAGTGTTGCCCTCCCATATTTGTTTCCATGGACCATGAATTCCCCCAGAGTGAGTCATGACCTCTCTCCTATACAGTCTACGTACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCCGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCGTTTAGATTTCTCCTGAAGGTGAGGTTCCATCCCTGACGGGACCAAATCTCAGAAATTTTAGCCTCAGGATTGGTGCAGAACGAGAAGAGATCAGGGAAAACCGTGTTTAGACAGTCTTGTCCAATCCACTTGTCCCTCCCAAAAAATACTTTGTTGCCCTCTCCCACCTTGACCACCAAATTCTTCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACCCCATATGTGCTATCTACTACATTAGACATCCACTCCTCGGTCTGCCCATACTTGTTGAGAATTGCTCTTCTCCATAATGCCTGATCTTCAACCACAAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCCTCAGATTTTTTATGCCAAGACCCCCTGTCTTCTTGCTTAGTAAGGCTGTCTGCCATTTAACTGAAGTGTATTTTTTCTTCTTCTTTGTTCCCCGACCATAGGAAATCCCGCCTCAATTTATCCAACCTCTCTTCTACCTTTGCTGGTAGAGGGAAAGGAGACATAACATATGTAGGCAACACATCTAGGACCGAATAGATCAGAGTGACTCTTCCTCCCAGAGATAGATAGTTTGTCTTCCAATTAGCCAACCTCTTCTCTGTCTTCTCAATGATTCAATCCCAAATCACCAGCTCCTTATGATTATTCCCCAAAGGCATTCCCAACATCTGAATATTTGCCACTTCCTTGACTTGGAAGATGCTGCTTTTCGCCCAGTTCACAGCCAGTCCGGAGACGGCCTCAAAAATCACCAAAACAACTTTAATGTAACTAACTTGTTCAGCCTTTGCATCGCAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATCTGCAAATTGAGTCCTGACTGATTACTAATGTTGAAACCCTTTATCCAGTCCTTCTGATTGGCCGCTCTAATCATACTGTTAAGACCCTCCATAGCTAAAATAAAAAGGAATAGGGAGAGAGGGTCTCCCTGTCGTAAACCTCTCTCAGAAGGAAAAAAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAATCCTATCCATTTAAGCCATTTGTCTCAAACCCCATCTGCCTCAGTATATTAAGTAGAAACTCCCAATTGACATGATCATATGCCTTTTCTACATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTCGAGTCTACACATTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATGAAGGCCATTTGGTGATTATTCACTAATTTGCTTATCACTTTCTTTAATCTCTCTGCCAACAGCTTGCCAAAAACCTTGTAAACTCCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCAAAGCTCCTGTCTTTTTTGGGATTAGAGCCACATAGGTGACGTTGAGACTCTTCTCTATTTCATGTCTTTCATCAAATTGTGTCACTGCATTCATGAAGTCTGCCTTCAGTATCTCCCAGAAGTTTTGGAAAAAACTCATCGGAAAGCCATCTGGTCCGGGGGCCTTATCACTAGTACATGCTTTTATGCAATTTAAAACTTCCTCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGCTTTCTGCTCCCTGTACTTTAATTTCTGGCCTCCATTGTTCTGTTTCTCTGTAAAGATTTTGATAGTAACTGATTATGGTTCCTATAATTTCTTCTGAATCTGTTACTGTAACCCCTTCAACCATCAGCTTATCTTATCAATGGTGTTGAATCTTTTATGAGCTGTAGCCATCCTGTGAAAATACTTGGTATTTCTGTCTCCGTGTTTGAGCCAGTGTATTCTTTCGATCCCTCTCCCCTTTTTCTTTCTACACCTGTCGTTATCCTCTCCCTCTTTTTCTTTGAACACCCCCCCCCCCCTCTTCCTCTTCTTCTTCCCCACCCTTCCTCCTCTACACCTTCCACCTTTCCCTTCCCCGCTCCTCCTTCAACAAATCTGTCAAAACTGTTGCGGGTCAGAATCTCTCTCAAAATTCTGAAATGTTGTTTTTTTAAAAAAATTGTAGAATTATCAAATGTTCTCAGAGTTAATTGAGCATTCATGTTTTTTCTTAAATTTTGATATCGGAAACATTATGCACTCTTCAAATAAATTATAGATTTTAAGTTGTACTTCATGTGAAATTAGTTGGTTTTTGAGTCATTATGATTGAAGTCCATCCTGTGCACTGCTTCAGTATGTTGTAATGTTAAAGCAATTCACTCTTATTATACAAGATGTTGTCGTATCAGTTCATATTTTTTCAGTTGGTTGTGGTGGTATATGGTGGAGGTGGGCAGAGGGTGGTGGAAAAAGTTGGAGTTAGAATAGGTCACTTCCATAATGTGTTGCCTCTTCTTTTTTTTTTTTGAGAAGGTAACGATTTGTATTATAAACCAATACTTATGTAGTACTGAAAGCCCCTTTACAAAAACGTATGAAATTCTAGGAACAAAAACAGCAAGCCTAGCATGATTCTAATACTTTTCTTTTTTTTGAAATAGATGATTCTAGTACTTCAAGGATTGCTTCTGCATCTACAGGGGAACTCTTTGTACACCAAAAACATAACAAAATACAATCTGTTTTGATCATCTGTAGGGATCTATCCTCAAAGCTTCTAGCATTCCTTTCTCTCCAAATGGTCCACCAGATGCATGCTGGAATTGTCCTCCAATAATTTCTGTTCTTTGCCTCAATTCCTGCATCCTCCCATCTTGAGAGAGTGTCAACAATCGTGCTAGGCATTGGTTATCCAGATTTGTCTCCAGGCCAATTGAGGGTTAGAGGAGTCCTGATCATGACCTTGTAACCTGAGCTCACTTTGAATCTTCCTTTGTTGTGCTCTGTCCACCGTAGGCAGTCCTCCCCTTCCTTCAAACCTTGAAATGATTCCAACCTTTTAAAGAATTCAACTAATCTACAAACTTCCCATTCATTTAAATTCCTTCTGATAGTTAGATCCCAACCTTGGGGAGACCACATTTCAGCCACTGTTCTGTCTTTATGCAGTGCTAAGTCAAAGATGTTGGGGAAGATCTCTGACAAATTTTGATTACCAAGCCATCTATCTTTCCAGAATTGTGTCCTGACACCATTGTGTACTGTTATAGTAGTATGATTCCTTAGGAAAGGCCACCAGTTCCTAATTGATCTCCAAACAGTAACACCATAGGGATTGGTTGCTTCCTTGGTGACCCATGAATCCATCTCTCCGTACTTCACTTTAATCACCTTGTTCCACATTGAGTGTGGTTCATGAGCATATCTCCACAACCATTTCAGCTTTAGAGCCTTCCTTTGGTTCTTCAATTTTTTTATGCCTAATCCTCGTTTTTTTCCTGTGATCATAAATCTCCATTTTACCAGATGGTATCCCTTTCTTTTCTTGTTTCCTTGCCAGAAAAAATCCTTTCTTAGTTTATCCAATCTCTATACTACTCCTACTCCTGCAGGTATTGGAAACAAAGTTAGCATGTACGTAGGAAGGGCATCCAAGACTGCATTTATCAGAGTGAGCCTGCCCCTTTTGATAAATATTGTGCTTTCAATCTGACTAACTTCTTCTCACATCTCTCCAAGACAGAATTTTTTAATTTCTTTGTACTGTGATTTTGCTCCCAATGGCATCCCAGGTAGATAGCAGGTAGTGCTCCCACCTCGCCTTCTAGCACTGAGGCCAAGAGCTCCATATTGGAGACCATGTTTATGGGATATAAATGGATCTTTCCCCATTGATGTGAAGACCTGACATACCTTCAAAAAGCACCAGAATTACCCTAGGGTATCTTAGTTGTTCCTCATCTGCATCACAAAAAATCAAAGTGTCATCTGCATATTTGTGTAACCTCCAAACTCTTCTCATTGTTTGTGGACACTTCAAATCCCGCGATCCACCTATTTGTTTTAGCTGTCTTGATCATGTTATTAAGTCCCTCCATGGCACGAATAAAGAGGAATGAAGATAAAGGATCCCCTTGTCTGATTCCTCTTTGGGCTTCAAAAAGACCTTCGGGAGCACCGTTAATGAGGACAGAAAACTTTACTGTTGAGATGCAAAACCGTATCCATCTAATCCACTTTTCTCCAAATCCCATTTTCCTGAGTATATTGAGAAGGAACCCCCAGTTAACATGATCATAAGCTTTCTCAGTGTCCAGTTTGCATAGGATGCCTGGTTTCTTTTGACCCACTCTAGAGTCTATTGCTTCATTTGCTATTAAGACCGCATCCATGATTTTTCTTCCTTTGATGAAAGCCATCTGTTGGGAGTCTACCAGCTTGTACATCGCCCTTTTGATTCTCTCTGTTAAAACTTTAGACAAGTTGTCATAGAAACTGCCTATCAAGCTTATTGGTCTGAAGTCTTTAAGTTCCTTTGCTCCTTTCTTCTTTGGGGTCAAGGCAATATAGGTAGCATTGAAACTCTTCTCAAACATTTCCTGCTCATAGAAATAATGGAAGGCCGCCATGATGTCATGCTTAAGAATTTCCCAACATTTGATGAAAAAACCCATAGTGTAACTATCAGGTCCTGGGGCTTTATCAATTACACATAACTTCAAGCATTTATAAACTTCCTGCTCCTCAAATTTGGCCTGTAGTTGTGATCTTTCTTCCTCTGATATTGAAGGACAATTCACTAAATTTCCGTCAGGTCTCCATCTTTATGTTTCAGTATACATTTTCTCATAAAACTTGATAATTTCCTCATTACTCTGTTTGGTTCTGTGATGGTCTTTCCCTCTACTTCCAATTGGTCAATATGGTTGCTTCTTTTATGGGAATTTGCAGAATTATGGAAGAATTTTGTATTGTTATCTCCTTCCTTCAACCACAAAATTCTAGAACTTTGTCTCCAAGCACATTCCTCATTTTTTATCAGTTCTTCGTACTCCATAAAGATCTCTGCCTTCAAAGTAGCCTCTTCCTCTGTCAATGCTCTTTTGTTCAGCAAAGAGGGATTTTTTAGCCTTTGAAGCTGTCACAGGGCTGGAAGCTTACCTTGCGAGGAGTCACCTGTTTAGTGTTGATATTGATGGTAATATTGAAGAGTTGGCTGAAATTGTGATGTAACGTTTCTTGTTGTATATTTGGGACTTCCTCTGAGTGTAAAAAACAATGATCAAATGATGGTCAATGAGTTCTAGACATGTGCAAAGAAACTGATCCCCCGGGAAAATAGTATTTATCTTTAAGTGGAAGGCGCACTCTAATCAACATAAGAAAGAGGGGATTGATCAAAAATCTCATCCTTTTCCTTGAAGGCTGATGTGATTTGTTTCCAAGATTCTAAAATGGAGGGGGATATGAAGGAAATAGTAAGAGAGTTATGGGGGGTCAGATGGATCAGTTATACTCAACTGGAGGCAAGTGATATTAGGGGAGGGATTATCCTAAAGTGGGACAACAGAATTTGGGAAGGGGAGATCAGCAGTATAGGCTCTTACTCTGTAACCTGTTATCTACAGTGATTACAGGTAATAATCAGGATTTCTCTTGGTATCTTACTGGAGTATATGCATTAAATGACATAATGGAAAGGGAAGAGGCATGGTGGGAAATTGCATCAGTTAGGGTCTCTGATTTCAGGTCCATGGGTTGTCTCTAGAGATTTCAACACGGTTAGACATCCATCAGAAAAGAAGAATTGCAACAGAATTAAAAAATCAATGACAGACTTCTCCGAATTCATTGAAGACATGGAGTTGATAGACTTCGATTTAACATGTGGTCAATTTTCCTGGAAACAGGGGGATAGACAGGCAACTGCTGCTAGACTAGATAGATTCCTAGTTTCAGAAGGATGGAACACACATTTAGGACTATAAGACAACTTGTTATTCTTAGATTGACCTCAGATCACACAACGCAGATGCTACAATGTGGTGAGTATGAACTCGATAAATCTTATTTCAAGTTTGAGAATTGGTAGCTTTAAACTGAAGATTTTGGTGACATTGGTGACAGAGTGAAGAACCGGTGGGAGTCTTTCCACTGCACAGGAAGGCCCGACTATATCTTGGCTTTCAAACTGAAAGTTATGAAAGGAGAAATTGAAGGAATGGAGTAAAATAGTCAAGGGTAATATGGAATTATAGAAACAGAACATACCAAACCATTTAACATAATTAAAGGAGCCAAGAACAGAGGATTTTGACAGAAGAAGAAATAACCAAGAGGCTAACTTTATCACTGGAATTTGAAGATATCGATAGGCATGAGGAGACTGCTTGGAGGCAAAGATCCTGGGTACTATGGGGCTAAATTAAGGAGATAGAAATACCAATTTTTTCACAGGACAACTAATGCACACAGGAGAATAAATACCATCGGTAAACTAGTAGGAAGAGGAGAAACTTTGACAGACCCAATCAACATCAAGAAAGAAATAATCTCTTTCTTGAGTTCTCTACTCAGAGACAGAGGAATGGATACCACACTCTGCTAGGAGCCTGCAGGAACTGTCCCATGGTCAGTGCAAAAGACAAACTAATGTTGATGGCCCCCTTTGAACCACAACAGATTCTGGACTGCTCTAGGACCAGATGGTTATACTCTGGCTTCTTCCACCAATGTTGGGCAGTGATTAGTTCAGATGTAGTAGCTGTAGTACAAAACTTTTTATAATGTAGGTTTCTTTCAGAAGAGATATAGTGCTATATTTGTAGCTCAACTCCAAAGAAAGTGGGTGCTATTGAATTAACTGATTCCAGCCAATCAACTTGATTGGGAGTGTCTACAAGATCTTTTCCATACTCTCAGCAGAAAGCTTGAAAAAAGTAACCCACAACTTGGTGCCAACAGATGGCCTTCATCAAAGGAAGACAAATCATGGATGCTAGCTACTATGATGGCAATTGAATGTGTTGAAGGAATGCAGAGGAGCAATTTGCCAGATATCTTATGCACACTAGATATCCAAGAAAACTTTTGGCCATCTTAACTGGAACTACCGTCTTGAACTATTACAGAAGATGGGATTTGGATCCAAGTGGATAAGGTGGATCAAACATTAAACCGGCAGAGTCAAATTCTCAGTATTGGTCAACAGAGCCCCCTACTGGTTTTTTCTCTTCCTACATAGGCTTGAGACAAGGAGCTATAGAAGGCATAAGCAATATGATATAGACTGCAAAATTAAATGGATGGGTCAAAGGTTCCCAAGCAATTCCCAGTACAGTGAACGACTTACAAATATCCACCTGCGGTATACTGTTGACACCCTGGTTTTCTGTGAGGCTTCCAAAGAACAAATTCTATTATTGAGAGTGATTGTCATCCTTTCTGAATCCATATATGCTTACACATTATTTGGATAAAGAGCTACATTTATCGTGTCAATGAAATGGCTGATATTCAATCCTTGGCTGATGTTTTAGGAGAGACATGAACACTTCCTACTAAATACTGGGGTATGCCTCTTGGTGCAAAGAGAAAATATGTGAGATATGGAATGAGGTGTAGAAAAATGTGAAAGAAGACTAACCAACTGGAGAAGTCAATATATCTTTATGGGAGGAAGATTGACTTTGAACAACAACATGCTTGATGCTTTACCCACATATATGATGTCTATCTTTCCCTCCCCTATATATGTGATAGAAAAGATAGACGCCTTAAGGAGGAATTTCTTCTGGCTAGACAATGATGACAAGAAAAAATTCATCTTGGGTAACTTTGACAAAAAAACAAGAAGAAAGGGGGAATGGGAGTCAGGAACATGTTGATGCACAATAGACGTCTGATTATGATGTGGTTGTGGAGATTTGATATAGATGACAACCAGCTTTGGAAACAAGTTGCTAAAGCTAAATATGGAAAAGAGGGGTTATGGACAACAAAGGTAGTGACTACTTTCTATGGATGCAACATCTGGAAATCTAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTGAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTATCTTGTGGGCCCAATGATGGTTGACTTTTTTTTCAAACTAGTGTCACGTAAGCTATAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAAAAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGGTTGAGGGGGTACTTGTGCATTTTTCCGGAAATCTATCCGAAACCTTTGGCCGATTTTCCAACAAAGAATAGGCTTCAAAATTGGGAATGGAATGAAAAATTTCCTGTTGGAATGACGTTTGGATTAGAGAAAACACACCCAATCATCTCTTTCCAAAATTATACAGCTTTTGTCAACAAGCATCAATAGCTGACATGTGGACAGACATGGATTAAAGACTTATTGACCCTGGGAATATAAGAAATCAATGTATTTAGGGAACCGAAACTTATCATCTGCCAAACTCAAAAGAAATGAAAAACGGGCAAGTATTGAGTCTCAGATTTAGAAGAATTTTTGAATAATTGAGAGATGGAAAAAATTGCAGATTTCCTCCACATTCTCAGTTAAATGGTTTTTTAGAAGAGGTGGATAGCTTAGTTTGACATTGTCACAGCAAAAGGGAAGTTTTTGTAAAGTCTATATCTCACTAGCTCCAACAATCAAGTGGGTTGTTCACTATGGAAGATGAGCTGGTGGTGAAAATTCCTTACAATGTAAGCTTGTTTCACATGGCTTTTTACTACAAAAAAGGTTCTGACAAATGAAATACTTGAGCAAGAGAGGAATGCAACTATACTCAGATGTTATCTCTTTGTAATGAACAAGTAGATATAGTTAACCACCATTTTTTTTGCACTGTAAATGGACATATCGACTATGGAAACTTTTGATCAACTTGAGGAAAATTTAGTGGGTGATGCCAAGAAGAATAAAGGGAGTGCTAAACTTAAGGAACAGTGATGGCAATGCAACTAGCAGGGAGGAGATATAGAAAGATCGTCTCAGCTTTATTTGGTGGTCAGTTTTGACTAAGAGAAATCAGAGATGTTTTGAGGGAAAACATTGTGACATCCAGAAGATCGTGATAAATTGCCTACCCCTCTATTATTTTTGGTGTAAACAGAAGTTGTTCATACAAACTGAAGATATTTTGTATGTTCACAGTTTATAATAGTTAAGTTTTAACAGATAAGACCCTTATGTAATCAGCCTACTTTTTTGTCGGACTAACAATTTCGTGATGTAGTATTCCTGTTGATATTAATTTTTACTTTTATGAAAAATTTACCAACTCAAAAATATCATTTGAATGATCATGATGCAATACGAAGAGCATATATTCAAAAGTCTTTTCCAATTTCAAAATTACAAGTTTCTTCAATGATGAGCTTTTGAGTAACTATTTGGTATTTATAGAAAAAAGAACATTTTTAATATTTCCAGTGAGTTTATGATGGACACGTCTTAGAAAATGAGAACTCTGAGGAGAGGTGCAACAAACAACAACATACCCAGTGAAACTCCACAAGGTTTAAGGAGGGTAGAATGTATGCAAACCTTACCACTATCTCGTGGAGGTAACGATATTGTTTTCTGAGAGACCCTCGGCTCAAGTGCAACAAATCCCGGTATAAAGGAGACAATGAAGATCGAGGAGAATTTGGCTAATAATGAGGAAATGATGCAAAAGTTTACCAGAGAGATTAATCATGTGATAATCCAAACTCCATAAACAACACACTAGGGTAGACTATTAAGAAAAAAACAAACAATTATAAAAATAAAAATAAAACAAAAGAAGTACAATAATGCAACTAGTACCATTGCAAACACCAGCCACCCTATGCACGACAACATTACACTACCTACTAATTTTCTACCCTAATACGTATCCTCCACACCCTCTTATCTAGGATCATATGGTCGGTAGCTTGAAACTGCATTATATCATGTCTTTCATATCTCCCTAATACTTCTTCGGCCTACCTCTGCCTCTCTTCATTCCTTCTATAAACAACCTCTTGTACCTCCCCATTGGTGCATCTATGCATTTCCTCTTCACATGTCCAAACCATCTGAGTCTCGCTTCTCTCATTTATCTACCACTGAGGCCCATCCCACCTTATTTTGAATATCCTCATTTCTAACTTTATCACTACCTAGTATTATGGGTGGGCGTTCAGTTCTTTGGTTCGGTTTTATCAAATTTCACTTCGGTTTTTCGATTTTCTGTTTTAGAAAAGTGTGCACCATATACCAAACCAAAGTAATTTGGTTCCATTCGGTTTAGTTAGGTGTTTTTAAATTGGTTTTTCGGTTCGAATGAAAAATAAAATGAGGACAAAGTCAAAGTGTAAGATAATTAAAATTTAAAAATATGTTGAGGGATCATGTGTCTCTCATGGAACGCTTGTTGTGCTAACTAAAAGACTAATCATCTTTGTCAAGAACATTGTGCCTTCAACTATTTCTCTAGAAAAACAAGGACGAAGACGGGTTCCTTAACATAACATACATTGATAAAAATATGTTTTGGTTATTCTTGAAAACTAATATTTGAAGTTAACTATTAATTATACATTTGTTTTGTTTTTTTTAATTTGTTCATGAATGATTTAATTGTTAGTTGAATTTTTATTATTAATTTGTATTTTTTTCAATAAAAGTTCGGTTCTTCGGTGCACTGAAGTTCTAAGACCCTTACACCGAACTAAGGAACCGAACTTTTGAAAAAATAACACCGACACCGAATCGAAAATTGAAGAACTGAATTAGTTCGGTTCGATTTTTCAGTTTCCCGGTATTTATGCCCACCTGTACCTAGTATGGCCACACATCCACGGACCAAACATCCATCGCAACATTCTCATCTCTGCAACTTGCATCTCTTGGACATGGGAGTTCTTAAGTAGCCAACATTCAGTTCCATACAAAAATGTTGGTCGAACCACCTTGCTACACTACTTACCTTTGAGTTCCAGTGGTACCCTTTTATCACACAAGACTCTAGAGGCAAGCCTTCACTTCATCCATGTCACACCGATACGATGTGTGATATCATCGTCGATGTCCTTGCTCCCTTGACGTATAGATCCAAGATACTTGAATATATCTCACTTGGGGATATTTTGTGTGTCAAGCCTCACTTCCATGCTTACCTCATGCATCACATCATTGAATTTGCACTCCACATATTCTGTCTTGGTCCAGCTCAACCTCAGCCCTTTAGCCTCCAAAGTATGTCTCCACATCTCTAACTTAACATTAACTCCAAAGGTGTAGTAGTGTGCTTGAATTTATTTTTCTAATATATGGCATTGTTATATTAATTTATTCACTTCTTTAAATGTCGACGGTGCTTATGGAAAATCATGTGTAAGTCACTGGAAGATAACTCTAGGTTCTTACAAGTTGTCACATTTTACTGAGTGCTATATATTTGGAGTGTATTGTTAAGCTTAAAAAGTTCTATTGTAAGATTTCACAGCATGATATTAACATTATCTTTTGGCATTTTATAGAGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAAGTTAAAGTTCTCCCACATCTCACTCTCAACTCTATGAATGACATTTTCTGACGGTTGATAATTATCCATCTGTACAGCTTTTCTCAAAATTAGGAATGTATGAAGCTGATTTGCTTGGTTTAGACTTGTGAATGTTCCATTCTGGTCTTGGAGCACGCTATACATCCTAAGGATGAGTGATAAATTAGGGATGTTAAATGATTTTAAACATTTTGAGACAATTTTTTATCTCGTAGGCAGTAGGAGGAACTTGAAAAAGATTCGAAGAGAAAAAAGCAAGAATTTCTTCATTTATCTGCAAATGCTCTGCTATGCCATATCTGCTGCATGGTGCTAATATGAACATTTGTCATTTAGAAGTCCAAGCGAAGTATTCGAATTAGAGAGTCAGTTAAACAAAATACCATTGCAAGTAGCATTTTTGACAGTTTATCATATGTCTATCAAATCAAGGAGAAAATATCCCGAATGCTCAAATTTTAGTTACCAAGAAAAGAAAAAAAATCTGGGTACATAAAAAAGAAAAAGCTCCAAATTTTTTAATATATCTTGTTGCTTGGTTTGAAAATGGTGTTGCACTGATGTTTTATATTCCTTCACATGTTCGACTAATTCTAGGCAGTTCTTTTTTCTTTTCATTTAGTTATGTAGTTTGTAATTTCTTTTTCTTAACTAGTCTATTGATTGTTGTACAGAGAGATACTTAGGCTTCTTCCTACTACAAAATAGATGATCAACTGCTGAAAAAATTCTCTTATTTTATCATTCAATTTCAGGTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAGGTACTACGTCGTACATTCACCTGTCAACCTGAACAATGTTGTTTAACTATAACGTAACACGGTAACATTATAGCTACGCAGTTAAGGCTGTATATTAAAATTTGTTGTACCTGCACAGGATGATCAGTCTATTGGGTAGATGTAAGAAAATTTTAGAATGTCCTTGGAACACTGATGATTTCTCTAGGTCAGAGAGAGTTCCATAATTGATTTTGTTCCTGTAAGCTTCCTGATTTATTTTCTTGAACAAGGTTGGCTGCAAAAGATCATGTCACGAATATGATATTATTATTCTACACTGCCAGATGGAACACCTTCAAATTGATGACAAGAGGAGCATGCTTAGTATGTACATCAGTAAATAAAAGGACCAATTTTAACCAAAATGCAAATTGGACCATCATTGCATGTCAACTTTGTTTTTTTAGTCACACATGATGCTATTTGTGTTTTTAATCTTTCACGCAGTGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAGGTCATACTTCCATCATTCTGCCTCAGTTATAATTCCTATATGAATTCCCTACATCCTTTCTTCTCTATCCAAATAATAAATAGCGTCTTTCAACCTCAGTGATTCTTTATATCTCAATTATCCCTGCAATAGTTATCTAGTTTAATCTGAACGAGTGGCGGCTTTTGCCTAGTAGTTATTTTTTACCTTTTCTTTCTTCAGTCTTCTTAAAACTGTCCCAACTGAT</genome_strand>
        <mrna_strand>ATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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..............................................................................................................................................................................................................................................TGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTNAATGCATTGGACAG.........................................................................................................................................................................................................TCTTCTTAAAACTGTCCCAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317413" ref_strand="+" ref_description="SGN-E317413 [cTOA-28-F1]">
      <seq>attaccgtgtacacccctgcgcatgttaccaccagcgtcttaaattcccggctcctccgctctccgccacgacggacattgtcgacggcgagatatcaccgcaatttttgcttaacttgcgtgttaataccggagacaaggcgggaaagcagacgattggtcaacatagcccttggggtcttgcttcaatggctagctctacctaacgatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattagagaaatccttagagattgatcaacctaaatatggagattgccggaatatattgcgttctggtcctgcatcatctcttcgtgtcaatattcgagcagtagcacaatacgcagctgatggtggcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41533" stop="61852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41833" g_stop="42040" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="248" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="319" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60647" g_stop="60741" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="414" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61522" g_stop="61552" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="445" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E317413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41833" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="60647" e_stop="60741"/>
          <exon e_start="61522" e_stop="61552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTCTAACGAACCAACGCCATAGGTCGTAGGAAGAAAACATTCGGTTTCATACTACAGTGCCCCATAACCAGATCCATATCAGGGGACCATAACATCATGCTGCAATCAGTGTGTCTATTTAGATCGAGTATTTCAATGATCTTTAAAGCAATACAGAGATATACTAGATTTAAAGGAGTAACAATGGATAGACACCCGAAGTTGGCACCACGGTCAGATAGACACTTTAAATGTGCCAGTGATCATTAGACACCTTTTCTTGATAGAAATTTGTATCATGAACATCTATCTGCGAGATCACCCGCTTGAGACTCACTCTTTGCTGATATCAGATGGTCAAATGAAATAATGACATCTGTAATCTATTTTTTTTAATAAAAATAGAATTAGAATAACTTATAAAATACAAATTTTATTTATTTACCTATACCATAAGATGGTAGATTTCCTAGGATCAATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACTTTATCAAAAAAAAAAAAACTATACTATAAGATGGAGTTTACATGCCAAAGCAGGCAGTGGGTCAACATGTCTACTTTGGCATGTAAGGTAGTTAGGTGATTTTAAATAAAATTAAATAACATGATTGGCTTAAAAACAAGTTAGAAACTTAAATGATAATGTCACTAAAACACAGGTGGTTAGAGAATCTTGAAAAAGGTAACGTTTGGCAGCTACTGAGATGCATTTGGCGGAGCTCAAATTCATTTAGGTGATTTCAAAAAAATTCTTGAGTTATTTGTTTGTATTTTTTTTAATTTGTTATATATTTGAAAATTGTGTATTATAAGAGGGAGTTTGCATGCCAAAGCAGGCAGCAGGTCAACATGTCTTCTTTGACATGTAAAGTTAGCTGGGTTATTTTAAATAAGATTTAATAACATGACTGGCTATAAAACAAGGTAGAAACTTAAATTACAATGACACTAAAACACATGTGGTTACATAATATTGAAAGGGGTAACTTTTGGCAGGTACTGAGACGCATTTGGTGGAGCTTAAATCCATTCAGGTGTTCTTAAAAGAATTCTTGACTTATTTGTTTGTATTTTTTTAATTAGCTAAATATTTAAAAATTTTCATAAAAAATATCATTAATCAGAATAATTAGCAACTTATAATATTTAAAAGACAAAAAATCGAATTGACTCTCGAATTCTATTAGTGCCACATAAATTGGAGAAGAGGAAGTAACATGTATTATCTGAAAATTAAGCTAAAAGTACTATCAATCTCAATAATTAATAATTCAAAATATTTAAAAATCATATAACAATTTAGTTGACTCTCCTAATTCCATCCATGCAGTATAAAATTGAGATAAATAGAGTAACACATATTGAGCATGTGTTTGCACGGGCTCTCCAGTAAATATGAGAAAAGCACTCTGTTCCTCTAATTTCTTTCATCAAATGTTTCAGAACTGAACCTCCGATCCCCCCCCCCCCCCCCTTTTTTTTTTTTAAGTTGTATTCTTCAGCATTAAGGTATGCTGGCTACCTCCAAAAAATTACAAGCTAAAACCATAATTACATTGATCCTAGGAAATCTACCAACTGTTCTGCTACTTCTATACCTTCTTCTTTACACCAAAAAATCAACATGTTAATGCGATTTTCTTTAACTTTCTGCATAGTGTTAGTAATATTCTCATGACACCTAAGATCTCTTTCTCTCCAAATAGTCCACCAGACACAAGCTGGTACTATAGACCACCATTTGTTTTATGTCTTGCTCCCCCCCCCCCCCCCCCTCATCCAGCAGCTCAAAAGATCAGCAGTATGTTCTGGCATCACCCAAGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGAACAGTAACCCTACAGTGTAGAAATAAGTGGTTGTTCGTTTCTTCCTTCTCATGACAAAAAAAACATTTGGAGACAATCTGGAAGCCTCTTTTTCTGAGTTTCTCCTGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAACATTTTACCCTGGTTGGAGTGTTGCCCTCCCATATTTGTTTCCATGGACCATGAATTCCCCCAGAGTGAGTCATGACCTCTCTCCTATACAGTCTACGTACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCCGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCGTTTAGATTTCTCCTGAAGGTGAGGTTCCATCCCTGACGGGACCAAATCTCAGAAATTTTAGCCTCAGGATTGGTGCAGAACGAGAAGAGATCAGGGAAAACCGTGTTTAGACAGTCTTGTCCAATCCACTTGTCCCTCCCAAAAAATACTTTGTTGCCCTCTCCCACCTTGACCACCAAATTCTTCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACCCCATATGTGCTATCTACTACATTAGACATCCACTCCTCGGTCTGCCCATACTTGTTGAGAATTGCTCTTCTCCATAATGCCTGATCTTCAACCACAAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCCTCAGATTTTTTATGCCAAGACCCCCTGTCTTCTTGCTTAGTAAGGCTGTCTGCCATTTAACTGAAGTGTATTTTTTCTTCTTCTTTGTTCCCCGACCATAGGAAATCCCGCCTCAATTTATCCAACCTCTCTTCTACCTTTGCTGGTAGAGGGAAAGGAGACATAACATATGTAGGCAACACATCTAGGACCGAATAGATCAGAGTGACTCTTCCTCCCAGAGATAGATAGTTTGTCTTCCAATTAGCCAACCTCTTCTCTGTCTTCTCAATGATTCAATCCCAAATCACCAGCTCCTTATGATTATTCCCCAAAGGCATTCCCAACATCTGAATATTTGCCACTTCCTTGACTTGGAAGATGCTGCTTTTCGCCCAGTTCACAGCCAGTCCGGAGACGGCCTCAAAAATCACCAAAACAACTTTAATGTAACTAACTTGTTCAGCCTTTGCATCGCAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATCTGCAAATTGAGTCCTGACTGATTACTAATGTTGAAACCCTTTATCCAGTCCTTCTGATTGGCCGCTCTAATCATACTGTTAAGACCCTCCATAGCTAAAATAAAAAGGAATAGGGAGAGAGGGTCTCCCTGTCGTAAACCTCTCTCAGAAGGAAAAAAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAATCCTATCCATTTAAGCCATTTGTCTCAAACCCCATCTGCCTCAGTATATTAAGTAGAAACTCCCAATTGACATGATCATATGCCTTTTCTACATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTCGAGTCTACACATTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATGAAGGCCATTTGGTGATTATTCACTAATTTGCTTATCACTTTCTTTAATCTCTCTGCCAACAGCTTGCCAAAAACCTTGTAAACTCCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCAAAGCTCCTGTCTTTTTTGGGATTAGAGCCACATAGGTGACGTTGAGACTCTTCTCTATTTCATGTCTTTCATCAAATTGTGTCACTGCATTCATGAAGTCTGCCTTCAGTATCTCCCAGAAGTTTTGGAAAAAACTCATCGGAAAGCCATCTGGTCCGGGGGCCTTATCACTAGTACATGCTTTTATGCAATTTAAAACTTCCTCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGCTTTCTGCTCCCTGTACTTTAATTTCTGGCCTCCATTGTTCTGTTTCTCTGTAAAGATTTTGATAGTAACTGATTATGGTTCCTATAATTTCTTCTGAATCTGTTACTGTAACCCCTTCAACCATCAGCTTATCTTATCAATGGTGTTGAATCTTTTATGAGCTGTAGCCATCCTGTGAAAATACTTGGTATTTCTGTCTCCGTGTTTGAGCCAGTGTATTCTTTCGATCCCTCTCCCCTTTTTCTTTCTACACCTGTCGTTATCCTCTCCCTCTTTTTCTTTGAACACCCCCCCCCCCCTCTTCCTCTTCTTCTTCCCCACCCTTCCTCCTCTACACCTTCCACCTTTCCCTTCCCCGCTCCTCCTTCAACAAATCTGTCAAAACTGTTGCGGGTCAGAATCTCTCTCAAAATTCTGAAATGTTGTTTTTTTAAAAAAATTGTAGAATTATCAAATGTTCTCAGAGTTAATTGAGCATTCATGTTTTTTCTTAAATTTTGATATCGGAAACATTATGCACTCTTCAAATAAATTATAGATTTTAAGTTGTACTTCATGTGAAATTAGTTGGTTTTTGAGTCATTATGATTGAAGTCCATCCTGTGCACTGCTTCAGTATGTTGTAATGTTAAAGCAATTCACTCTTATTATACAAGATGTTGTCGTATCAGTTCATATTTTTTCAGTTGGTTGTGGTGGTATATGGTGGAGGTGGGCAGAGGGTGGTGGAAAAAGTTGGAGTTAGAATAGGTCACTTCCATAATGTGTTGCCTCTTCTTTTTTTTTTTTGAGAAGGTAACGATTTGTATTATAAACCAATACTTATGTAGTACTGAAAGCCCCTTTACAAAAACGTATGAAATTCTAGGAACAAAAACAGCAAGCCTAGCATGATTCTAATACTTTTCTTTTTTTTGAAATAGATGATTCTAGTACTTCAAGGATTGCTTCTGCATCTACAGGGGAACTCTTTGTACACCAAAAACATAACAAAATACAATCTGTTTTGATCATCTGTAGGGATCTATCCTCAAAGCTTCTAGCATTCCTTTCTCTCCAAATGGTCCACCAGATGCATGCTGGAATTGTCCTCCAATAATTTCTGTTCTTTGCCTCAATTCCTGCATCCTCCCATCTTGAGAGAGTGTCAACAATCGTGCTAGGCATTGGTTATCCAGATTTGTCTCCAGGCCAATTGAGGGTTAGAGGAGTCCTGATCATGACCTTGTAACCTGAGCTCACTTTGAATCTTCCTTTGTTGTGCTCTGTCCACCGTAGGCAGTCCTCCCCTTCCTTCAAACCTTGAAATGATTCCAACCTTTTAAAGAATTCAACTAATCTACAAACTTCCCATTCATTTAAATTCCTTCTGATAGTTAGATCCCAACCTTGGGGAGACCACATTTCAGCCACTGTTCTGTCTTTATGCAGTGCTAAGTCAAAGATGTTGGGGAAGATCTCTGACAAATTTTGATTACCAAGCCATCTATCTTTCCAGAATTGTGTCCTGACACCATTGTGTACTGTTATAGTAGTATGATTCCTTAGGAAAGGCCACCAGTTCCTAATTGATCTCCAAACAGTAACACCATAGGGATTGGTTGCTTCCTTGGTGACCCATGAATCCATCTCTCCGTACTTCACTTTAATCACCTTGTTCCACATTGAGTGTGGTTCATGAGCATATCTCCACAACCATTTCAGCTTTAGAGCCTTCCTTTGGTTCTTCAATTTTTTTATGCCTAATCCTCGTTTTTTTCCTGTGATCATAAATCTCCATTTTACCAGATGGTATCCCTTTCTTTTCTTGTTTCCTTGCCAGAAAAAATCCTTTCTTAGTTTATCCAATCTCTATACTACTCCTACTCCTGCAGGTATTGGAAACAAAGTTAGCATGTACGTAGGAAGGGCATCCAAGACTGCATTTATCAGAGTGAGCCTGCCCCTTTTGATAAATATTGTGCTTTCAATCTGACTAACTTCTTCTCACATCTCTCCAAGACAGAATTTTTTAATTTCTTTGTACTGTGATTTTGCTCCCAATGGCATCCCAGGTAGATAGCAGGTAGTGCTCCCACCTCGCCTTCTAGCACTGAGGCCAAGAGCTCCATATTGGAGACCATGTTTATGGGATATAAATGGATCTTTCCCCATTGATGTGAAGACCTGACATACCTTCAAAAAGCACCAGAATTACCCTAGGGTATCTTAGTTGTTCCTCATCTGCATCACAAAAAATCAAAGTGTCATCTGCATATTTGTGTAACCTCCAAACTCTTCTCATTGTTTGTGGACACTTCAAATCCCGCGATCCACCTATTTGTTTTAGCTGTCTTGATCATGTTATTAAGTCCCTCCATGGCACGAATAAAGAGGAATGAAGATAAAGGATCCCCTTGTCTGATTCCTCTTTGGGCTTCAAAAAGACCTTCGGGAGCACCGTTAATGAGGACAGAAAACTTTACTGTTGAGATGCAAAACCGTATCCATCTAATCCACTTTTCTCCAAATCCCATTTTCCTGAGTATATTGAGAAGGAACCCCCAGTTAACATGATCATAAGCTTTCTCAGTGTCCAGTTTGCATAGGATGCCTGGTTTCTTTTGACCCACTCTAGAGTCTATTGCTTCATTTGCTATTAAGACCGCATCCATGATTTTTCTTCCTTTGATGAAAGCCATCTGTTGGGAGTCTACCAGCTTGTACATCGCCCTTTTGATTCTCTCTGTTAAAACTTTAGACAAGTTGTCATAGAAACTGCCTATCAAGCTTATTGGTCTGAAGTCTTTAAGTTCCTTTGCTCCTTTCTTCTTTGGGGTCAAGGCAATATAGGTAGCATTGAAACTCTTCTCAAACATTTCCTGCTCATAGAAATAATGGAAGGCCGCCATGATGTCATGCTTAAGAATTTCCCAACATTTGATGAAAAAACCCATAGTGTAACTATCAGGTCCTGGGGCTTTATCAATTACACATAACTTCAAGCATTTATAAACTTCCTGCTCCTCAAATTTGGCCTGTAGTTGTGATCTTTCTTCCTCTGATATTGAAGGACAATTCACTAAATTTCCGTCAGGTCTCCATCTTTATGTTTCAGTATACATTTTCTCATAAAACTTGATAATTTCCTCATTACTCTGTTTGGTTCTGTGATGGTCTTTCCCTCTACTTCCAATTGGTCAATATGGTTGCTTCTTTTATGGGAATTTGCAGAATTATGGAAGAATTTTGTATTGTTATCTCCTTCCTTCAACCACAAAATTCTAGAACTTTGTCTCCAAGCACATTCCTCATTTTTTATCAGTTCTTCGTACTCCATAAAGATCTCTGCCTTCAAAGTAGCCTCTTCCTCTGTCAATGCTCTTTTGTTCAGCAAAGAGGGATTTTTTAGCCTTTGAAGCTGTCACAGGGCTGGAAGCTTACCTTGCGAGGAGTCACCTGTTTAGTGTTGATATTGATGGTAATATTGAAGAGTTGGCTGAAATTGTGATGTAACGTTTCTTGTTGTATATTTGGGACTTCCTCTGAGTGTAAAAAACAATGATCAAATGATGGTCAATGAGTTCTAGACATGTGCAAAGAAACTGATCCCCCGGGAAAATAGTATTTATCTTTAAGTGGAAGGCGCACTCTAATCAACATAAGAAAGAGGGGATTGATCAAAAATCTCATCCTTTTCCTTGAAGGCTGATGTGATTTGTTTCCAAGATTCTAAAATGGAGGGGGATATGAAGGAAATAGTAAGAGAGTTATGGGGGGTCAGATGGATCAGTTATACTCAACTGGAGGCAAGTGATATTAGGGGAGGGATTATCCTAAAGTGGGACAACAGAATTTGGGAAGGGGAGATCAGCAGTATAGGCTCTTACTCTGTAACCTGTTATCTACAGTGATTACAGGTAATAATCAGGATTTCTCTTGGTATCTTACTGGAGTATATGCATTAAATGACATAATGGAAAGGGAAGAGGCATGGTGGGAAATTGCATCAGTTAGGGTCTCTGATTTCAGGTCCATGGGTTGTCTCTAGAGATTTCAACACGGTTAGACATCCATCAGAAAAGAAGAATTGCAACAGAATTAAAAAATCAATGACAGACTTCTCCGAATTCATTGAAGACATGGAGTTGATAGACTTCGATTTAACATGTGGTCAATTTTCCTGGAAACAGGGGGATAGACAGGCAACTGCTGCTAGACTAGATAGATTCCTAGTTTCAGAAGGATGGAACACACATTTAGGACTATAAGACAACTTGTTATTCTTAGATTGACCTCAGATCACACAACGCAGATGCTACAATGTGGTGAGTATGAACTCGATAAATCTTATTTCAAGTTTGAGAATTGGTAGCTTTAAACTGAAGATTTTGGTGACATTGGTGACAGAGTGAAGAACCGGTGGGAGTCTTTCCACTGCACAGGAAGGCCCGACTATATCTTGGCTTTCAAACTGAAAGTTATGAAAGGAGAAATTGAAGGAATGGAGTAAAATAGTCAAGGGTAATATGGAATTATAGAAACAGAACATACCAAACCATTTAACATAATTAAAGGAGCCAAGAACAGAGGATTTTGACAGAAGAAGAAATAACCAAGAGGCTAACTTTATCACTGGAATTTGAAGATATCGATAGGCATGAGGAGACTGCTTGGAGGCAAAGATCCTGGGTACTATGGGGCTAAATTAAGGAGATAGAAATACCAATTTTTTCACAGGACAACTAATGCACACAGGAGAATAAATACCATCGGTAAACTAGTAGGAAGAGGAGAAACTTTGACAGACCCAATCAACATCAAGAAAGAAATAATCTCTTTCTTGAGTTCTCTACTCAGAGACAGAGGAATGGATACCACACTCTGCTAGGAGCCTGCAGGAACTGTCCCATGGTCAGTGCAAAAGACAAACTAATGTTGATGGCCCCCTTTGAACCACAACAGATTCTGGACTGCTCTAGGACCAGATGGTTATACTCTGGCTTCTTCCACCAATGTTGGGCAGTGATTAGTTCAGATGTAGTAGCTGTAGTACAAAACTTTTTATAATGTAGGTTTCTTTCAGAAGAGATATAGTGCTATATTTGTAGCTCAACTCCAAAGAAAGTGGGTGCTATTGAATTAACTGATTCCAGCCAATCAACTTGATTGGGAGTGTCTACAAGATCTTTTCCATACTCTCAGCAGAAAGCTTGAAAAAAGTAACCCACAACTTGGTGCCAACAGATGGCCTTCATCAAAGGAAGACAAATCATGGATGCTAGCTACTATGATGGCAATTGAATGTGTTGAAGGAATGCAGAGGAGCAATTTGCCAGATATCTTATGCACACTAGATATCCAAGAAAACTTTTGGCCATCTTAACTGGAACTACCGTCTTGAACTATTACAGAAGATGGGATTTGGATCCAAGTGGATAAGGTGGATCAAACATTAAACCGGCAGAGTCAAATTCTCAGTATTGGTCAACAGAGCCCCCTACTGGTTTTTTCTCTTCCTACATAGGCTTGAGACAAGGAGCTATAGAAGGCATAAGCAATATGATATAGACTGCAAAATTAAATGGATGGGTCAAAGGTTCCCAAGCAATTCCCAGTACAGTGAACGACTTACAAATATCCACCTGCGGTATACTGTTGACACCCTGGTTTTCTGTGAGGCTTCCAAAGAACAAATTCTATTATTGAGAGTGATTGTCATCCTTTCTGAATCCATATATGCTTACACATTATTTGGATAAAGAGCTACATTTATCGTGTCAATGAAATGGCTGATATTCAATCCTTGGCTGATGTTTTAGGAGAGACATGAACACTTCCTACTAAATACTGGGGTATGCCTCTTGGTGCAAAGAGAAAATATGTGAGATATGGAATGAGGTGTAGAAAAATGTGAAAGAAGACTAACCAACTGGAGAAGTCAATATATCTTTATGGGAGGAAGATTGACTTTGAACAACAACATGCTTGATGCTTTACCCACATATATGATGTCTATCTTTCCCTCCCCTATATATGTGATAGAAAAGATAGACGCCTTAAGGAGGAATTTCTTCTGGCTAGACAATGATGACAAGAAAAAATTCATCTTGGGTAACTTTGACAAAAAAACAAGAAGAAAGGGGGAATGGGAGTCAGGAACATGTTGATGCACAATAGACGTCTGATTATGATGTGGTTGTGGAGATTTGATATAGATGACAACCAGCTTTGGAAACAAGTTGCTAAAGCTAAATATGGAAAAGAGGGGTTATGGACAACAAAGGTAGTGACTACTTTCTATGGATGCAACATCTGGAAATCTAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTGAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTATCTTGTGGGCCCAATGATGGTTGACTTTTTTTTCAAACTAGTGTCACGTAAGCTATAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAAAAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGGTTGAGGGGGTACTTGTGCATTTTTCCGGAAATCTATCCGAAACCTTTGGCCGATTTTCCAACAAAGAATAGGCTTCAAAATTGGGAATGGAATGAAAAATTTCCTGTTGGAATGACGTTTGGATTAGAGAAAACACACCCAATCATCTCTTTCCAAAATTATACAGCTTTTGTCAACAAGCATCAATAGCTGACATGTGGACAGACATGGATTAAAGACTTATTGACCCTGGGAATATAAGAAATCAATGTATTTAGGGAACCGAAACTTATCATCTGCCAAACTCAAAAGAAATGAAAAACGGGCAAGTATTGAGTCTCAGATTTAGAAGAATTTTTGAATAATTGAGAGATGGAAAAAATTGCAGATTTCCTCCACATTCTCAGTTAAATGGTTTTTTAGAAGAGGTGGATAGCTTAGTTTGACATTGTCACAGCAAAAGGGAAGTTTTTGTAAAGTCTATATCTCACTAGCTCCAACAATCAAGTGGGTTGTTCACTATGGAAGATGAGCTGGTGGTGAAAATTCCTTACAATGTAAGCTTGTTTCACATGGCTTTTTACTACAAAAAAGGTTCTGACAAATGAAATACTTGAGCAAGAGAGGAATGCAACTATACTCAGATGTTATCTCTTTGTAATGAACAAGTAGATATAGTTAACCACCATTTTTTTTGCACTGTAAATGGACATATCGACTATGGAAACTTTTGATCAACTTGAGGAAAATTTAGTGGGTGATGCCAAGAAGAATAAAGGGAGTGCTAAACTTAAGGAACAGTGATGGCAATGCAACTAGCAGGGAGGAGATATAGAAAGATCGTCTCAGCTTTATTTGGTGGTCAGTTTTGACTAAGAGAAATCAGAGATGTTTTGAGGGAAAACATTGTGACATCCAGAAGATCGTGATAAATTGCCTACCCCTCTATTATTTTTGGTGTAAACAGAAGTTGTTCATACAAACTGAAGATATTTTGTATGTTCACAGTTTATAATAGTTAAGTTTTAACAGATAAGACCCTTATGTAATCAGCCTACTTTTTTGTCGGACTAACAATTTCGTGATGTAGTATTCCTGTTGATATTAATTTTTACTTTTATGAAAAATTTACCAACTCAAAAATATCATTTGAATGATCATGATGCAATACGAAGAGCATATATTCAAAAGTCTTTTCCAATTTCAAAATTACAAGTTTCTTCAATGATGAGCTTTTGAGTAACTATTTGGTATTTATAGAAAAAAGAACATTTTTAATATTTCCAGTGAGTTTATGATGGACACGTCTTAGAAAATGAGAACTCTGAGGAGAGGTGCAACAAACAACAACATACCCAGTGAAACTCCACAAGGTTTAAGGAGGGTAGAATGTATGCAAACCTTACCACTATCTCGTGGAGGTAACGATATTGTTTTCTGAGAGACCCTCGGCTCAAGTGCAACAAATCCCGGTATAAAGGAGACAATGAAGATCGAGGAGAATTTGGCTAATAATGAGGAAATGATGCAAAAGTTTACCAGAGAGATTAATCATGTGATAATCCAAACTCCATAAACAACACACTAGGGTAGACTATTAAGAAAAAAACAAACAATTATAAAAATAAAAATAAAACAAAAGAAGTACAATAATGCAACTAGTACCATTGCAAACACCAGCCACCCTATGCACGACAACATTACACTACCTACTAATTTTCTACCCTAATACGTATCCTCCACACCCTCTTATCTAGGATCATATGGTCGGTAGCTTGAAACTGCATTATATCATGTCTTTCATATCTCCCTAATACTTCTTCGGCCTACCTCTGCCTCTCTTCATTCCTTCTATAAACAACCTCTTGTACCTCCCCATTGGTGCATCTATGCATTTCCTCTTCACATGTCCAAACCATCTGAGTCTCGCTTCTCTCATTTATCTACCACTGAGGCCCATCCCACCTTATTTTGAATATCCTCATTTCTAACTTTATCACTACCTAGTATTATGGGTGGGCGTTCAGTTCTTTGGTTCGGTTTTATCAAATTTCACTTCGGTTTTTCGATTTTCTGTTTTAGAAAAGTGTGCACCATATACCAAACCAAAGTAATTTGGTTCCATTCGGTTTAGTTAGGTGTTTTTAAATTGGTTTTTCGGTTCGAATGAAAAATAAAATGAGGACAAAGTCAAAGTGTAAGATAATTAAAATTTAAAAATATGTTGAGGGATCATGTGTCTCTCATGGAACGCTTGTTGTGCTAACTAAAAGACTAATCATCTTTGTCAAGAACATTGTGCCTTCAACTATTTCTCTAGAAAAACAAGGACGAAGACGGGTTCCTTAACATAACATACATTGATAAAAATATGTTTTGGTTATTCTTGAAAACTAATATTTGAAGTTAACTATTAATTATACATTTGTTTTGTTTTTTTTAATTTGTTCATGAATGATTTAATTGTTAGTTGAATTTTTATTATTAATTTGTATTTTTTTCAATAAAAGTTCGGTTCTTCGGTGCACTGAAGTTCTAAGACCCTTACACCGAACTAAGGAACCGAACTTTTGAAAAAATAACACCGACACCGAATCGAAAATTGAAGAACTGAATTAGTTCGGTTCGATTTTTCAGTTTCCCGGTATTTATGCCCACCTGTACCTAGTATGGCCACACATCCACGGACCAAACATCCATCGCAACATTCTCATCTCTGCAACTTGCATCTCTTGGACATGGGAGTTCTTAAGTAGCCAACATTCAGTTCCATACAAAAATGTTGGTCGAACCACCTTGCTACACTACTTACCTTTGAGTTCCAGTGGTACCCTTTTATCACACAAGACTCTAGAGGCAAGCCTTCACTTCATCCATGTCACACCGATACGATGTGTGATATCATCGTCGATGTCCTTGCTCCCTTGACGTATAGATCCAAGATACTTGAATATATCTCACTTGGGGATATTTTGTGTGTCAAGCCTCACTTCCATGCTTACCTCATGCATCACATCATTGAATTTGCACTCCACATATTCTGTCTTGGTCCAGCTCAACCTCAGCCCTTTAGCCTCCAAAGTATGTCTCCACATCTCTAACTTAACATTAACTCCAAAGGTGTAGTAGTGTGCTTGAATTTATTTTTCTAATATATGGCATTGTTATATTAATTTATTCACTTCTTTAAATGTCGACGGTGCTTATGGAAAATCATGTGTAAGTCACTGGAAGATAACTCTAGGTTCTTACAAGTTGTCACATTTTACTGAGTGCTATATATTTGGAGTGTATTGTTAAGCTTAAAAAGTTCTATTGTAAGATTTCACAGCATGATATTAACATTATCTTTTGGCATTTTATAGAGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAAGTTAAAGTTCTCCCACATCTCACTCTCAACTCTATGAATGACATTTTCTGACGGTTGATAATTATCCATCTGTACAGCTTTTCTCAAAATTAGGAATGTATGAAGCTGATTTGCTTGGTTTAGACTTGTGAATGTTCCATTCTGGTCTTGGAGCACGCTATACATCCTAAGGATGAGTGATAAATTAGGGATGTTAAATGATTTTAAACATTTTGAGACAATTTTTTATCTCGTAGGCAGTAGGAGGAACTTGAAAAAGATTCGAAGAGAAAAAAGCAAGAATTTCTTCATTTATCTGCAAATGCTCTGCTATGCCATATCTGCTGCATGGTGCTAATATGAACATTTGTCATTTAGAAGTCCAAGCGAAGTATTCGAATTAGAGAGTCAGTTAAACAAAATACCATTGCAAGTAGCATTTTTGACAGTTTATCATATGTCTATCAAATCAAGGAGAAAATATCCCGAATGCTCAAATTTTAGTTACCAAGAAAAGAAAAAAAATCTGGGTACATAAAAAAGAAAAAGCTCCAAATTTTTTAATATATCTTGTTGCTTGGTTTGAAAATGGTGTTGCACTGATGTTTTATATTCCTTCACATGTTCGACTAATTCTAGGCAGTTCTTTTTTCTTTTCATTTAGTTATGTAGTTTGTAATTTCTTTTTCTTAACTAGTCTATTGATTGTTGTACAGAGAGATACTTAGGCTTCTTCCTACTACAAAATAGATGATCAACTGCTGAAAAAATTCTCTTATTTTATCATTCAATTTCAGGTAGCACAATACGCAGCTGATGGTGGCAATG</genome_strand>
        <mrna_strand>ATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469558" ref_strand="+" ref_description="SGN-E469558 [cSTB-12-B17]">
      <seq>accatgtacacccctgcgcatgttaccaccagcgtcttaaattcccggctcctccgctctccgccacgacaaacattgtcgccggcgagatatcaccgcaattttagcttaacttgcgcgttattaccggagacaaggcgggaaagcagacgattggtcaacatagcccttggagtcttgcttcaatggctagctctacctaaagatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41536" stop="46723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41836" g_stop="42040" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="245" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46423" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="276" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E469558" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41836" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTA</genome_strand>
        <mrna_strand>ACCATGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACAAACATTGTCGCCGGCGAGATATCACCGCAATTTTAGCTTAACTTGCGCGTTATTACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGAGTCTTGCTTCAATGGCTAGCTCTACCTAAAG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459099" ref_strand="+" ref_description="SGN-E459099 [cPRO-33-G18]">
      <seq>ccatgtacacccctgcgcatgttaccaccagcgtcttaaattcccggctcctccgctctccgccacgacaaacattgtcgccggcgagatatcaccgcaattttagcttaacttgcgcgttattaccggagacaaggcgggaaagcagacgattggtcaacatagcccttggagtcttgcttcaatggctagctctacctaaagatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattagagaaatctttggaggttgatcaacctaaatatggagattgccggaatatattgcgttctggtcctgcatcatctcttcgtgtcaatattcgagcagtagcacaatacgcagctgatggtggcaatggtaaatcagctttcagtgatgttgatcagtgtctgagtgcattggaaggacttgactcgttgcttttgcgtgcatcaagaaaggatccaggggcctcaattgactcaatgaaggcacaaattgttagtgccttaaatgcattggacagtcttcttaaaaccgtcccagctgatgtgcttgaaaagggaaagtctgtagctgattcatatttttttgctggtgaggaagacgtagcacctgagagactggaccctgagctgaagcaactggaatctatactgtaaatacgaaagcctctttcttgatcaggtaaatgtttttgtattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41537" stop="62855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41837" g_stop="42040" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="244" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="315" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60647" g_stop="60741" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="410" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61522" g_stop="61589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="478" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61590" i_stop="62057" i_length="468">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62058" g_stop="62168" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="589" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.673" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62370" g_stop="62555" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="771" r_length="182" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E459099" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41837" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="60647" e_stop="60741"/>
          <exon e_start="61522" e_stop="61589"/>
          <exon e_start="62058" e_stop="62168"/>
          <exon e_start="62370" e_stop="62555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTCTAACGAACCAACGCCATAGGTCGTAGGAAGAAAACATTCGGTTTCATACTACAGTGCCCCATAACCAGATCCATATCAGGGGACCATAACATCATGCTGCAATCAGTGTGTCTATTTAGATCGAGTATTTCAATGATCTTTAAAGCAATACAGAGATATACTAGATTTAAAGGAGTAACAATGGATAGACACCCGAAGTTGGCACCACGGTCAGATAGACACTTTAAATGTGCCAGTGATCATTAGACACCTTTTCTTGATAGAAATTTGTATCATGAACATCTATCTGCGAGATCACCCGCTTGAGACTCACTCTTTGCTGATATCAGATGGTCAAATGAAATAATGACATCTGTAATCTATTTTTTTTAATAAAAATAGAATTAGAATAACTTATAAAATACAAATTTTATTTATTTACCTATACCATAAGATGGTAGATTTCCTAGGATCAATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACTTTATCAAAAAAAAAAAAACTATACTATAAGATGGAGTTTACATGCCAAAGCAGGCAGTGGGTCAACATGTCTACTTTGGCATGTAAGGTAGTTAGGTGATTTTAAATAAAATTAAATAACATGATTGGCTTAAAAACAAGTTAGAAACTTAAATGATAATGTCACTAAAACACAGGTGGTTAGAGAATCTTGAAAAAGGTAACGTTTGGCAGCTACTGAGATGCATTTGGCGGAGCTCAAATTCATTTAGGTGATTTCAAAAAAATTCTTGAGTTATTTGTTTGTATTTTTTTTAATTTGTTATATATTTGAAAATTGTGTATTATAAGAGGGAGTTTGCATGCCAAAGCAGGCAGCAGGTCAACATGTCTTCTTTGACATGTAAAGTTAGCTGGGTTATTTTAAATAAGATTTAATAACATGACTGGCTATAAAACAAGGTAGAAACTTAAATTACAATGACACTAAAACACATGTGGTTACATAATATTGAAAGGGGTAACTTTTGGCAGGTACTGAGACGCATTTGGTGGAGCTTAAATCCATTCAGGTGTTCTTAAAAGAATTCTTGACTTATTTGTTTGTATTTTTTTAATTAGCTAAATATTTAAAAATTTTCATAAAAAATATCATTAATCAGAATAATTAGCAACTTATAATATTTAAAAGACAAAAAATCGAATTGACTCTCGAATTCTATTAGTGCCACATAAATTGGAGAAGAGGAAGTAACATGTATTATCTGAAAATTAAGCTAAAAGTACTATCAATCTCAATAATTAATAATTCAAAATATTTAAAAATCATATAACAATTTAGTTGACTCTCCTAATTCCATCCATGCAGTATAAAATTGAGATAAATAGAGTAACACATATTGAGCATGTGTTTGCACGGGCTCTCCAGTAAATATGAGAAAAGCACTCTGTTCCTCTAATTTCTTTCATCAAATGTTTCAGAACTGAACCTCCGATCCCCCCCCCCCCCCCCTTTTTTTTTTTTAAGTTGTATTCTTCAGCATTAAGGTATGCTGGCTACCTCCAAAAAATTACAAGCTAAAACCATAATTACATTGATCCTAGGAAATCTACCAACTGTTCTGCTACTTCTATACCTTCTTCTTTACACCAAAAAATCAACATGTTAATGCGATTTTCTTTAACTTTCTGCATAGTGTTAGTAATATTCTCATGACACCTAAGATCTCTTTCTCTCCAAATAGTCCACCAGACACAAGCTGGTACTATAGACCACCATTTGTTTTATGTCTTGCTCCCCCCCCCCCCCCCCCTCATCCAGCAGCTCAAAAGATCAGCAGTATGTTCTGGCATCACCCAAGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGAACAGTAACCCTACAGTGTAGAAATAAGTGGTTGTTCGTTTCTTCCTTCTCATGACAAAAAAAACATTTGGAGACAATCTGGAAGCCTCTTTTTCTGAGTTTCTCCTGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAACATTTTACCCTGGTTGGAGTGTTGCCCTCCCATATTTGTTTCCATGGACCATGAATTCCCCCAGAGTGAGTCATGACCTCTCTCCTATACAGTCTACGTACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCCGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCGTTTAGATTTCTCCTGAAGGTGAGGTTCCATCCCTGACGGGACCAAATCTCAGAAATTTTAGCCTCAGGATTGGTGCAGAACGAGAAGAGATCAGGGAAAACCGTGTTTAGACAGTCTTGTCCAATCCACTTGTCCCTCCCAAAAAATACTTTGTTGCCCTCTCCCACCTTGACCACCAAATTCTTCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACCCCATATGTGCTATCTACTACATTAGACATCCACTCCTCGGTCTGCCCATACTTGTTGAGAATTGCTCTTCTCCATAATGCCTGATCTTCAACCACAAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCCTCAGATTTTTTATGCCAAGACCCCCTGTCTTCTTGCTTAGTAAGGCTGTCTGCCATTTAACTGAAGTGTATTTTTTCTTCTTCTTTGTTCCCCGACCATAGGAAATCCCGCCTCAATTTATCCAACCTCTCTTCTACCTTTGCTGGTAGAGGGAAAGGAGACATAACATATGTAGGCAACACATCTAGGACCGAATAGATCAGAGTGACTCTTCCTCCCAGAGATAGATAGTTTGTCTTCCAATTAGCCAACCTCTTCTCTGTCTTCTCAATGATTCAATCCCAAATCACCAGCTCCTTATGATTATTCCCCAAAGGCATTCCCAACATCTGAATATTTGCCACTTCCTTGACTTGGAAGATGCTGCTTTTCGCCCAGTTCACAGCCAGTCCGGAGACGGCCTCAAAAATCACCAAAACAACTTTAATGTAACTAACTTGTTCAGCCTTTGCATCGCAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATCTGCAAATTGAGTCCTGACTGATTACTAATGTTGAAACCCTTTATCCAGTCCTTCTGATTGGCCGCTCTAATCATACTGTTAAGACCCTCCATAGCTAAAATAAAAAGGAATAGGGAGAGAGGGTCTCCCTGTCGTAAACCTCTCTCAGAAGGAAAAAAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAATCCTATCCATTTAAGCCATTTGTCTCAAACCCCATCTGCCTCAGTATATTAAGTAGAAACTCCCAATTGACATGATCATATGCCTTTTCTACATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTCGAGTCTACACATTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATGAAGGCCATTTGGTGATTATTCACTAATTTGCTTATCACTTTCTTTAATCTCTCTGCCAACAGCTTGCCAAAAACCTTGTAAACTCCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCAAAGCTCCTGTCTTTTTTGGGATTAGAGCCACATAGGTGACGTTGAGACTCTTCTCTATTTCATGTCTTTCATCAAATTGTGTCACTGCATTCATGAAGTCTGCCTTCAGTATCTCCCAGAAGTTTTGGAAAAAACTCATCGGAAAGCCATCTGGTCCGGGGGCCTTATCACTAGTACATGCTTTTATGCAATTTAAAACTTCCTCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGCTTTCTGCTCCCTGTACTTTAATTTCTGGCCTCCATTGTTCTGTTTCTCTGTAAAGATTTTGATAGTAACTGATTATGGTTCCTATAATTTCTTCTGAATCTGTTACTGTAACCCCTTCAACCATCAGCTTATCTTATCAATGGTGTTGAATCTTTTATGAGCTGTAGCCATCCTGTGAAAATACTTGGTATTTCTGTCTCCGTGTTTGAGCCAGTGTATTCTTTCGATCCCTCTCCCCTTTTTCTTTCTACACCTGTCGTTATCCTCTCCCTCTTTTTCTTTGAACACCCCCCCCCCCCTCTTCCTCTTCTTCTTCCCCACCCTTCCTCCTCTACACCTTCCACCTTTCCCTTCCCCGCTCCTCCTTCAACAAATCTGTCAAAACTGTTGCGGGTCAGAATCTCTCTCAAAATTCTGAAATGTTGTTTTTTTAAAAAAATTGTAGAATTATCAAATGTTCTCAGAGTTAATTGAGCATTCATGTTTTTTCTTAAATTTTGATATCGGAAACATTATGCACTCTTCAAATAAATTATAGATTTTAAGTTGTACTTCATGTGAAATTAGTTGGTTTTTGAGTCATTATGATTGAAGTCCATCCTGTGCACTGCTTCAGTATGTTGTAATGTTAAAGCAATTCACTCTTATTATACAAGATGTTGTCGTATCAGTTCATATTTTTTCAGTTGGTTGTGGTGGTATATGGTGGAGGTGGGCAGAGGGTGGTGGAAAAAGTTGGAGTTAGAATAGGTCACTTCCATAATGTGTTGCCTCTTCTTTTTTTTTTTTGAGAAGGTAACGATTTGTATTATAAACCAATACTTATGTAGTACTGAAAGCCCCTTTACAAAAACGTATGAAATTCTAGGAACAAAAACAGCAAGCCTAGCATGATTCTAATACTTTTCTTTTTTTTGAAATAGATGATTCTAGTACTTCAAGGATTGCTTCTGCATCTACAGGGGAACTCTTTGTACACCAAAAACATAACAAAATACAATCTGTTTTGATCATCTGTAGGGATCTATCCTCAAAGCTTCTAGCATTCCTTTCTCTCCAAATGGTCCACCAGATGCATGCTGGAATTGTCCTCCAATAATTTCTGTTCTTTGCCTCAATTCCTGCATCCTCCCATCTTGAGAGAGTGTCAACAATCGTGCTAGGCATTGGTTATCCAGATTTGTCTCCAGGCCAATTGAGGGTTAGAGGAGTCCTGATCATGACCTTGTAACCTGAGCTCACTTTGAATCTTCCTTTGTTGTGCTCTGTCCACCGTAGGCAGTCCTCCCCTTCCTTCAAACCTTGAAATGATTCCAACCTTTTAAAGAATTCAACTAATCTACAAACTTCCCATTCATTTAAATTCCTTCTGATAGTTAGATCCCAACCTTGGGGAGACCACATTTCAGCCACTGTTCTGTCTTTATGCAGTGCTAAGTCAAAGATGTTGGGGAAGATCTCTGACAAATTTTGATTACCAAGCCATCTATCTTTCCAGAATTGTGTCCTGACACCATTGTGTACTGTTATAGTAGTATGATTCCTTAGGAAAGGCCACCAGTTCCTAATTGATCTCCAAACAGTAACACCATAGGGATTGGTTGCTTCCTTGGTGACCCATGAATCCATCTCTCCGTACTTCACTTTAATCACCTTGTTCCACATTGAGTGTGGTTCATGAGCATATCTCCACAACCATTTCAGCTTTAGAGCCTTCCTTTGGTTCTTCAATTTTTTTATGCCTAATCCTCGTTTTTTTCCTGTGATCATAAATCTCCATTTTACCAGATGGTATCCCTTTCTTTTCTTGTTTCCTTGCCAGAAAAAATCCTTTCTTAGTTTATCCAATCTCTATACTACTCCTACTCCTGCAGGTATTGGAAACAAAGTTAGCATGTACGTAGGAAGGGCATCCAAGACTGCATTTATCAGAGTGAGCCTGCCCCTTTTGATAAATATTGTGCTTTCAATCTGACTAACTTCTTCTCACATCTCTCCAAGACAGAATTTTTTAATTTCTTTGTACTGTGATTTTGCTCCCAATGGCATCCCAGGTAGATAGCAGGTAGTGCTCCCACCTCGCCTTCTAGCACTGAGGCCAAGAGCTCCATATTGGAGACCATGTTTATGGGATATAAATGGATCTTTCCCCATTGATGTGAAGACCTGACATACCTTCAAAAAGCACCAGAATTACCCTAGGGTATCTTAGTTGTTCCTCATCTGCATCACAAAAAATCAAAGTGTCATCTGCATATTTGTGTAACCTCCAAACTCTTCTCATTGTTTGTGGACACTTCAAATCCCGCGATCCACCTATTTGTTTTAGCTGTCTTGATCATGTTATTAAGTCCCTCCATGGCACGAATAAAGAGGAATGAAGATAAAGGATCCCCTTGTCTGATTCCTCTTTGGGCTTCAAAAAGACCTTCGGGAGCACCGTTAATGAGGACAGAAAACTTTACTGTTGAGATGCAAAACCGTATCCATCTAATCCACTTTTCTCCAAATCCCATTTTCCTGAGTATATTGAGAAGGAACCCCCAGTTAACATGATCATAAGCTTTCTCAGTGTCCAGTTTGCATAGGATGCCTGGTTTCTTTTGACCCACTCTAGAGTCTATTGCTTCATTTGCTATTAAGACCGCATCCATGATTTTTCTTCCTTTGATGAAAGCCATCTGTTGGGAGTCTACCAGCTTGTACATCGCCCTTTTGATTCTCTCTGTTAAAACTTTAGACAAGTTGTCATAGAAACTGCCTATCAAGCTTATTGGTCTGAAGTCTTTAAGTTCCTTTGCTCCTTTCTTCTTTGGGGTCAAGGCAATATAGGTAGCATTGAAACTCTTCTCAAACATTTCCTGCTCATAGAAATAATGGAAGGCCGCCATGATGTCATGCTTAAGAATTTCCCAACATTTGATGAAAAAACCCATAGTGTAACTATCAGGTCCTGGGGCTTTATCAATTACACATAACTTCAAGCATTTATAAACTTCCTGCTCCTCAAATTTGGCCTGTAGTTGTGATCTTTCTTCCTCTGATATTGAAGGACAATTCACTAAATTTCCGTCAGGTCTCCATCTTTATGTTTCAGTATACATTTTCTCATAAAACTTGATAATTTCCTCATTACTCTGTTTGGTTCTGTGATGGTCTTTCCCTCTACTTCCAATTGGTCAATATGGTTGCTTCTTTTATGGGAATTTGCAGAATTATGGAAGAATTTTGTATTGTTATCTCCTTCCTTCAACCACAAAATTCTAGAACTTTGTCTCCAAGCACATTCCTCATTTTTTATCAGTTCTTCGTACTCCATAAAGATCTCTGCCTTCAAAGTAGCCTCTTCCTCTGTCAATGCTCTTTTGTTCAGCAAAGAGGGATTTTTTAGCCTTTGAAGCTGTCACAGGGCTGGAAGCTTACCTTGCGAGGAGTCACCTGTTTAGTGTTGATATTGATGGTAATATTGAAGAGTTGGCTGAAATTGTGATGTAACGTTTCTTGTTGTATATTTGGGACTTCCTCTGAGTGTAAAAAACAATGATCAAATGATGGTCAATGAGTTCTAGACATGTGCAAAGAAACTGATCCCCCGGGAAAATAGTATTTATCTTTAAGTGGAAGGCGCACTCTAATCAACATAAGAAAGAGGGGATTGATCAAAAATCTCATCCTTTTCCTTGAAGGCTGATGTGATTTGTTTCCAAGATTCTAAAATGGAGGGGGATATGAAGGAAATAGTAAGAGAGTTATGGGGGGTCAGATGGATCAGTTATACTCAACTGGAGGCAAGTGATATTAGGGGAGGGATTATCCTAAAGTGGGACAACAGAATTTGGGAAGGGGAGATCAGCAGTATAGGCTCTTACTCTGTAACCTGTTATCTACAGTGATTACAGGTAATAATCAGGATTTCTCTTGGTATCTTACTGGAGTATATGCATTAAATGACATAATGGAAAGGGAAGAGGCATGGTGGGAAATTGCATCAGTTAGGGTCTCTGATTTCAGGTCCATGGGTTGTCTCTAGAGATTTCAACACGGTTAGACATCCATCAGAAAAGAAGAATTGCAACAGAATTAAAAAATCAATGACAGACTTCTCCGAATTCATTGAAGACATGGAGTTGATAGACTTCGATTTAACATGTGGTCAATTTTCCTGGAAACAGGGGGATAGACAGGCAACTGCTGCTAGACTAGATAGATTCCTAGTTTCAGAAGGATGGAACACACATTTAGGACTATAAGACAACTTGTTATTCTTAGATTGACCTCAGATCACACAACGCAGATGCTACAATGTGGTGAGTATGAACTCGATAAATCTTATTTCAAGTTTGAGAATTGGTAGCTTTAAACTGAAGATTTTGGTGACATTGGTGACAGAGTGAAGAACCGGTGGGAGTCTTTCCACTGCACAGGAAGGCCCGACTATATCTTGGCTTTCAAACTGAAAGTTATGAAAGGAGAAATTGAAGGAATGGAGTAAAATAGTCAAGGGTAATATGGAATTATAGAAACAGAACATACCAAACCATTTAACATAATTAAAGGAGCCAAGAACAGAGGATTTTGACAGAAGAAGAAATAACCAAGAGGCTAACTTTATCACTGGAATTTGAAGATATCGATAGGCATGAGGAGACTGCTTGGAGGCAAAGATCCTGGGTACTATGGGGCTAAATTAAGGAGATAGAAATACCAATTTTTTCACAGGACAACTAATGCACACAGGAGAATAAATACCATCGGTAAACTAGTAGGAAGAGGAGAAACTTTGACAGACCCAATCAACATCAAGAAAGAAATAATCTCTTTCTTGAGTTCTCTACTCAGAGACAGAGGAATGGATACCACACTCTGCTAGGAGCCTGCAGGAACTGTCCCATGGTCAGTGCAAAAGACAAACTAATGTTGATGGCCCCCTTTGAACCACAACAGATTCTGGACTGCTCTAGGACCAGATGGTTATACTCTGGCTTCTTCCACCAATGTTGGGCAGTGATTAGTTCAGATGTAGTAGCTGTAGTACAAAACTTTTTATAATGTAGGTTTCTTTCAGAAGAGATATAGTGCTATATTTGTAGCTCAACTCCAAAGAAAGTGGGTGCTATTGAATTAACTGATTCCAGCCAATCAACTTGATTGGGAGTGTCTACAAGATCTTTTCCATACTCTCAGCAGAAAGCTTGAAAAAAGTAACCCACAACTTGGTGCCAACAGATGGCCTTCATCAAAGGAAGACAAATCATGGATGCTAGCTACTATGATGGCAATTGAATGTGTTGAAGGAATGCAGAGGAGCAATTTGCCAGATATCTTATGCACACTAGATATCCAAGAAAACTTTTGGCCATCTTAACTGGAACTACCGTCTTGAACTATTACAGAAGATGGGATTTGGATCCAAGTGGATAAGGTGGATCAAACATTAAACCGGCAGAGTCAAATTCTCAGTATTGGTCAACAGAGCCCCCTACTGGTTTTTTCTCTTCCTACATAGGCTTGAGACAAGGAGCTATAGAAGGCATAAGCAATATGATATAGACTGCAAAATTAAATGGATGGGTCAAAGGTTCCCAAGCAATTCCCAGTACAGTGAACGACTTACAAATATCCACCTGCGGTATACTGTTGACACCCTGGTTTTCTGTGAGGCTTCCAAAGAACAAATTCTATTATTGAGAGTGATTGTCATCCTTTCTGAATCCATATATGCTTACACATTATTTGGATAAAGAGCTACATTTATCGTGTCAATGAAATGGCTGATATTCAATCCTTGGCTGATGTTTTAGGAGAGACATGAACACTTCCTACTAAATACTGGGGTATGCCTCTTGGTGCAAAGAGAAAATATGTGAGATATGGAATGAGGTGTAGAAAAATGTGAAAGAAGACTAACCAACTGGAGAAGTCAATATATCTTTATGGGAGGAAGATTGACTTTGAACAACAACATGCTTGATGCTTTACCCACATATATGATGTCTATCTTTCCCTCCCCTATATATGTGATAGAAAAGATAGACGCCTTAAGGAGGAATTTCTTCTGGCTAGACAATGATGACAAGAAAAAATTCATCTTGGGTAACTTTGACAAAAAAACAAGAAGAAAGGGGGAATGGGAGTCAGGAACATGTTGATGCACAATAGACGTCTGATTATGATGTGGTTGTGGAGATTTGATATAGATGACAACCAGCTTTGGAAACAAGTTGCTAAAGCTAAATATGGAAAAGAGGGGTTATGGACAACAAAGGTAGTGACTACTTTCTATGGATGCAACATCTGGAAATCTAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTGAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTATCTTGTGGGCCCAATGATGGTTGACTTTTTTTTCAAACTAGTGTCACGTAAGCTATAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAAAAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGGTTGAGGGGGTACTTGTGCATTTTTCCGGAAATCTATCCGAAACCTTTGGCCGATTTTCCAACAAAGAATAGGCTTCAAAATTGGGAATGGAATGAAAAATTTCCTGTTGGAATGACGTTTGGATTAGAGAAAACACACCCAATCATCTCTTTCCAAAATTATACAGCTTTTGTCAACAAGCATCAATAGCTGACATGTGGACAGACATGGATTAAAGACTTATTGACCCTGGGAATATAAGAAATCAATGTATTTAGGGAACCGAAACTTATCATCTGCCAAACTCAAAAGAAATGAAAAACGGGCAAGTATTGAGTCTCAGATTTAGAAGAATTTTTGAATAATTGAGAGATGGAAAAAATTGCAGATTTCCTCCACATTCTCAGTTAAATGGTTTTTTAGAAGAGGTGGATAGCTTAGTTTGACATTGTCACAGCAAAAGGGAAGTTTTTGTAAAGTCTATATCTCACTAGCTCCAACAATCAAGTGGGTTGTTCACTATGGAAGATGAGCTGGTGGTGAAAATTCCTTACAATGTAAGCTTGTTTCACATGGCTTTTTACTACAAAAAAGGTTCTGACAAATGAAATACTTGAGCAAGAGAGGAATGCAACTATACTCAGATGTTATCTCTTTGTAATGAACAAGTAGATATAGTTAACCACCATTTTTTTTGCACTGTAAATGGACATATCGACTATGGAAACTTTTGATCAACTTGAGGAAAATTTAGTGGGTGATGCCAAGAAGAATAAAGGGAGTGCTAAACTTAAGGAACAGTGATGGCAATGCAACTAGCAGGGAGGAGATATAGAAAGATCGTCTCAGCTTTATTTGGTGGTCAGTTTTGACTAAGAGAAATCAGAGATGTTTTGAGGGAAAACATTGTGACATCCAGAAGATCGTGATAAATTGCCTACCCCTCTATTATTTTTGGTGTAAACAGAAGTTGTTCATACAAACTGAAGATATTTTGTATGTTCACAGTTTATAATAGTTAAGTTTTAACAGATAAGACCCTTATGTAATCAGCCTACTTTTTTGTCGGACTAACAATTTCGTGATGTAGTATTCCTGTTGATATTAATTTTTACTTTTATGAAAAATTTACCAACTCAAAAATATCATTTGAATGATCATGATGCAATACGAAGAGCATATATTCAAAAGTCTTTTCCAATTTCAAAATTACAAGTTTCTTCAATGATGAGCTTTTGAGTAACTATTTGGTATTTATAGAAAAAAGAACATTTTTAATATTTCCAGTGAGTTTATGATGGACACGTCTTAGAAAATGAGAACTCTGAGGAGAGGTGCAACAAACAACAACATACCCAGTGAAACTCCACAAGGTTTAAGGAGGGTAGAATGTATGCAAACCTTACCACTATCTCGTGGAGGTAACGATATTGTTTTCTGAGAGACCCTCGGCTCAAGTGCAACAAATCCCGGTATAAAGGAGACAATGAAGATCGAGGAGAATTTGGCTAATAATGAGGAAATGATGCAAAAGTTTACCAGAGAGATTAATCATGTGATAATCCAAACTCCATAAACAACACACTAGGGTAGACTATTAAGAAAAAAACAAACAATTATAAAAATAAAAATAAAACAAAAGAAGTACAATAATGCAACTAGTACCATTGCAAACACCAGCCACCCTATGCACGACAACATTACACTACCTACTAATTTTCTACCCTAATACGTATCCTCCACACCCTCTTATCTAGGATCATATGGTCGGTAGCTTGAAACTGCATTATATCATGTCTTTCATATCTCCCTAATACTTCTTCGGCCTACCTCTGCCTCTCTTCATTCCTTCTATAAACAACCTCTTGTACCTCCCCATTGGTGCATCTATGCATTTCCTCTTCACATGTCCAAACCATCTGAGTCTCGCTTCTCTCATTTATCTACCACTGAGGCCCATCCCACCTTATTTTGAATATCCTCATTTCTAACTTTATCACTACCTAGTATTATGGGTGGGCGTTCAGTTCTTTGGTTCGGTTTTATCAAATTTCACTTCGGTTTTTCGATTTTCTGTTTTAGAAAAGTGTGCACCATATACCAAACCAAAGTAATTTGGTTCCATTCGGTTTAGTTAGGTGTTTTTAAATTGGTTTTTCGGTTCGAATGAAAAATAAAATGAGGACAAAGTCAAAGTGTAAGATAATTAAAATTTAAAAATATGTTGAGGGATCATGTGTCTCTCATGGAACGCTTGTTGTGCTAACTAAAAGACTAATCATCTTTGTCAAGAACATTGTGCCTTCAACTATTTCTCTAGAAAAACAAGGACGAAGACGGGTTCCTTAACATAACATACATTGATAAAAATATGTTTTGGTTATTCTTGAAAACTAATATTTGAAGTTAACTATTAATTATACATTTGTTTTGTTTTTTTTAATTTGTTCATGAATGATTTAATTGTTAGTTGAATTTTTATTATTAATTTGTATTTTTTTCAATAAAAGTTCGGTTCTTCGGTGCACTGAAGTTCTAAGACCCTTACACCGAACTAAGGAACCGAACTTTTGAAAAAATAACACCGACACCGAATCGAAAATTGAAGAACTGAATTAGTTCGGTTCGATTTTTCAGTTTCCCGGTATTTATGCCCACCTGTACCTAGTATGGCCACACATCCACGGACCAAACATCCATCGCAACATTCTCATCTCTGCAACTTGCATCTCTTGGACATGGGAGTTCTTAAGTAGCCAACATTCAGTTCCATACAAAAATGTTGGTCGAACCACCTTGCTACACTACTTACCTTTGAGTTCCAGTGGTACCCTTTTATCACACAAGACTCTAGAGGCAAGCCTTCACTTCATCCATGTCACACCGATACGATGTGTGATATCATCGTCGATGTCCTTGCTCCCTTGACGTATAGATCCAAGATACTTGAATATATCTCACTTGGGGATATTTTGTGTGTCAAGCCTCACTTCCATGCTTACCTCATGCATCACATCATTGAATTTGCACTCCACATATTCTGTCTTGGTCCAGCTCAACCTCAGCCCTTTAGCCTCCAAAGTATGTCTCCACATCTCTAACTTAACATTAACTCCAAAGGTGTAGTAGTGTGCTTGAATTTATTTTTCTAATATATGGCATTGTTATATTAATTTATTCACTTCTTTAAATGTCGACGGTGCTTATGGAAAATCATGTGTAAGTCACTGGAAGATAACTCTAGGTTCTTACAAGTTGTCACATTTTACTGAGTGCTATATATTTGGAGTGTATTGTTAAGCTTAAAAAGTTCTATTGTAAGATTTCACAGCATGATATTAACATTATCTTTTGGCATTTTATAGAGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAAGTTAAAGTTCTCCCACATCTCACTCTCAACTCTATGAATGACATTTTCTGACGGTTGATAATTATCCATCTGTACAGCTTTTCTCAAAATTAGGAATGTATGAAGCTGATTTGCTTGGTTTAGACTTGTGAATGTTCCATTCTGGTCTTGGAGCACGCTATACATCCTAAGGATGAGTGATAAATTAGGGATGTTAAATGATTTTAAACATTTTGAGACAATTTTTTATCTCGTAGGCAGTAGGAGGAACTTGAAAAAGATTCGAAGAGAAAAAAGCAAGAATTTCTTCATTTATCTGCAAATGCTCTGCTATGCCATATCTGCTGCATGGTGCTAATATGAACATTTGTCATTTAGAAGTCCAAGCGAAGTATTCGAATTAGAGAGTCAGTTAAACAAAATACCATTGCAAGTAGCATTTTTGACAGTTTATCATATGTCTATCAAATCAAGGAGAAAATATCCCGAATGCTCAAATTTTAGTTACCAAGAAAAGAAAAAAAATCTGGGTACATAAAAAAGAAAAAGCTCCAAATTTTTTAATATATCTTGTTGCTTGGTTTGAAAATGGTGTTGCACTGATGTTTTATATTCCTTCACATGTTCGACTAATTCTAGGCAGTTCTTTTTTCTTTTCATTTAGTTATGTAGTTTGTAATTTCTTTTTCTTAACTAGTCTATTGATTGTTGTACAGAGAGATACTTAGGCTTCTTCCTACTACAAAATAGATGATCAACTGCTGAAAAAATTCTCTTATTTTATCATTCAATTTCAGGTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAGGTACTACGTCGTACATTCACCTGTCAACCTGAACAATGTTGTTTAACTATAACGTAACACGGTAACATTATAGCTACGCAGTTAAGGCTGTATATTAAAATTTGTTGTACCTGCACAGGATGATCAGTCTATTGGGTAGATGTAAGAAAATTTTAGAATGTCCTTGGAACACTGATGATTTCTCTAGGTCAGAGAGAGTTCCATAATTGATTTTGTTCCTGTAAGCTTCCTGATTTATTTTCTTGAACAAGGTTGGCTGCAAAAGATCATGTCACGAATATGATATTATTATTCTACACTGCCAGATGGAACACCTTCAAATTGATGACAAGAGGAGCATGCTTAGTATGTACATCAGTAAATAAAAGGACCAATTTTAACCAAAATGCAAATTGGACCATCATTGCATGTCAACTTTGTTTTTTTAGTCACACATGATGCTATTTGTGTTTTTAATCTTTCACGCAGTGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAGGTCATACTTCCATCATTCTGCCTCAGTTATAATTCCTATATGAATTCCCTACATCCTTTCTTCTCTATCCAAATAATAAATAGCGTCTTTCAACCTCAGTGATTCTTTATATCTCAATTATCCCTGCAATAGTTATCTAGTTTAATCTGAACGAGTGGCGGCTTTTGCCTAGTAGTTATTTTTTACCTTTTCTTTCTTCAGTCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAGGAAGAAGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGTAAAAAATTACAAAAGCCTCTTTCTTGATCAGGTCAATGTTTTTGCATTGCTC</genome_strand>
        <mrna_strand>CCATGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACAAACATTGTCGCCGGCGAGATATCACCGCAATTTTAGCTTAACTTGCGCGTTATTACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGAGTCTTGCTTCAATGGCTAGCTCTACCTAAAG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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..........................................................................................................................................................................................................................................TGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGTTAGTGCCTTAAATGCATTGGACAG.........................................................................................................................................................................................................TCTTCTTAAAACCGTCCCAGCTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAGGAAGACGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGT---AAA-TACGAAAGCCTCTTTCTTGATCAGGTAAATGTTTTTGTATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406642" ref_strand="+" ref_description="SGN-E406642 [PPI-4-B5]">
      <seq>tacacccctgcgcatgttaccaccagcgtcttaaattcccggctcctccgctctccgccacgacaaacattgtcgccggcgagacatcaccgcaattttagcttaacttgcgcgttattaccggagacaaggcgggaaagcagacgattggtcaacatagcccttggagtcttgcttcaatggctagctctacctaaagatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattagagaaatctttggaggttgatcaacctaaatatggagattgccggaatatattgcgttctggtcctgcatcatctcttcgtgtcaatattcgagcagtagcacaatacgcagctgatggtggcaatggtaaatcagccttcagtgatgttgatcagtgtctgagtgcattggaaggacttgactcgttgcttttgcgtgcatcaagaaaggatccaggggcctcaattgactcaatgaaggcacaaattgttagtgccttaaatgcattggacagtcttcttaaaaccgtcccagctgatgtgcttgaaagggaaagtctgtagctgattcatatttttttgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41542" stop="62741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41842" g_stop="42040" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="239" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="310" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60647" g_stop="60741" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="405" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61522" g_stop="61589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="473" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61590" i_stop="62057" i_length="468">
            <donor d_prob="0.915" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62058" g_stop="62168" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="584" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.673" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62370" g_stop="62441" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="655" r_length="71" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E406642" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41842" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="60647" e_stop="60741"/>
          <exon e_start="61522" e_stop="61589"/>
          <exon e_start="62058" e_stop="62168"/>
          <exon e_start="62370" e_stop="62441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTCTAACGAACCAACGCCATAGGTCGTAGGAAGAAAACATTCGGTTTCATACTACAGTGCCCCATAACCAGATCCATATCAGGGGACCATAACATCATGCTGCAATCAGTGTGTCTATTTAGATCGAGTATTTCAATGATCTTTAAAGCAATACAGAGATATACTAGATTTAAAGGAGTAACAATGGATAGACACCCGAAGTTGGCACCACGGTCAGATAGACACTTTAAATGTGCCAGTGATCATTAGACACCTTTTCTTGATAGAAATTTGTATCATGAACATCTATCTGCGAGATCACCCGCTTGAGACTCACTCTTTGCTGATATCAGATGGTCAAATGAAATAATGACATCTGTAATCTATTTTTTTTAATAAAAATAGAATTAGAATAACTTATAAAATACAAATTTTATTTATTTACCTATACCATAAGATGGTAGATTTCCTAGGATCAATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACTTTATCAAAAAAAAAAAAACTATACTATAAGATGGAGTTTACATGCCAAAGCAGGCAGTGGGTCAACATGTCTACTTTGGCATGTAAGGTAGTTAGGTGATTTTAAATAAAATTAAATAACATGATTGGCTTAAAAACAAGTTAGAAACTTAAATGATAATGTCACTAAAACACAGGTGGTTAGAGAATCTTGAAAAAGGTAACGTTTGGCAGCTACTGAGATGCATTTGGCGGAGCTCAAATTCATTTAGGTGATTTCAAAAAAATTCTTGAGTTATTTGTTTGTATTTTTTTTAATTTGTTATATATTTGAAAATTGTGTATTATAAGAGGGAGTTTGCATGCCAAAGCAGGCAGCAGGTCAACATGTCTTCTTTGACATGTAAAGTTAGCTGGGTTATTTTAAATAAGATTTAATAACATGACTGGCTATAAAACAAGGTAGAAACTTAAATTACAATGACACTAAAACACATGTGGTTACATAATATTGAAAGGGGTAACTTTTGGCAGGTACTGAGACGCATTTGGTGGAGCTTAAATCCATTCAGGTGTTCTTAAAAGAATTCTTGACTTATTTGTTTGTATTTTTTTAATTAGCTAAATATTTAAAAATTTTCATAAAAAATATCATTAATCAGAATAATTAGCAACTTATAATATTTAAAAGACAAAAAATCGAATTGACTCTCGAATTCTATTAGTGCCACATAAATTGGAGAAGAGGAAGTAACATGTATTATCTGAAAATTAAGCTAAAAGTACTATCAATCTCAATAATTAATAATTCAAAATATTTAAAAATCATATAACAATTTAGTTGACTCTCCTAATTCCATCCATGCAGTATAAAATTGAGATAAATAGAGTAACACATATTGAGCATGTGTTTGCACGGGCTCTCCAGTAAATATGAGAAAAGCACTCTGTTCCTCTAATTTCTTTCATCAAATGTTTCAGAACTGAACCTCCGATCCCCCCCCCCCCCCCCTTTTTTTTTTTTAAGTTGTATTCTTCAGCATTAAGGTATGCTGGCTACCTCCAAAAAATTACAAGCTAAAACCATAATTACATTGATCCTAGGAAATCTACCAACTGTTCTGCTACTTCTATACCTTCTTCTTTACACCAAAAAATCAACATGTTAATGCGATTTTCTTTAACTTTCTGCATAGTGTTAGTAATATTCTCATGACACCTAAGATCTCTTTCTCTCCAAATAGTCCACCAGACACAAGCTGGTACTATAGACCACCATTTGTTTTATGTCTTGCTCCCCCCCCCCCCCCCCCTCATCCAGCAGCTCAAAAGATCAGCAGTATGTTCTGGCATCACCCAAGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGAACAGTAACCCTACAGTGTAGAAATAAGTGGTTGTTCGTTTCTTCCTTCTCATGACAAAAAAAACATTTGGAGACAATCTGGAAGCCTCTTTTTCTGAGTTTCTCCTGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAACATTTTACCCTGGTTGGAGTGTTGCCCTCCCATATTTGTTTCCATGGACCATGAATTCCCCCAGAGTGAGTCATGACCTCTCTCCTATACAGTCTACGTACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCCGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCGTTTAGATTTCTCCTGAAGGTGAGGTTCCATCCCTGACGGGACCAAATCTCAGAAATTTTAGCCTCAGGATTGGTGCAGAACGAGAAGAGATCAGGGAAAACCGTGTTTAGACAGTCTTGTCCAATCCACTTGTCCCTCCCAAAAAATACTTTGTTGCCCTCTCCCACCTTGACCACCAAATTCTTCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACCCCATATGTGCTATCTACTACATTAGACATCCACTCCTCGGTCTGCCCATACTTGTTGAGAATTGCTCTTCTCCATAATGCCTGATCTTCAACCACAAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCCTCAGATTTTTTATGCCAAGACCCCCTGTCTTCTTGCTTAGTAAGGCTGTCTGCCATTTAACTGAAGTGTATTTTTTCTTCTTCTTTGTTCCCCGACCATAGGAAATCCCGCCTCAATTTATCCAACCTCTCTTCTACCTTTGCTGGTAGAGGGAAAGGAGACATAACATATGTAGGCAACACATCTAGGACCGAATAGATCAGAGTGACTCTTCCTCCCAGAGATAGATAGTTTGTCTTCCAATTAGCCAACCTCTTCTCTGTCTTCTCAATGATTCAATCCCAAATCACCAGCTCCTTATGATTATTCCCCAAAGGCATTCCCAACATCTGAATATTTGCCACTTCCTTGACTTGGAAGATGCTGCTTTTCGCCCAGTTCACAGCCAGTCCGGAGACGGCCTCAAAAATCACCAAAACAACTTTAATGTAACTAACTTGTTCAGCCTTTGCATCGCAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATCTGCAAATTGAGTCCTGACTGATTACTAATGTTGAAACCCTTTATCCAGTCCTTCTGATTGGCCGCTCTAATCATACTGTTAAGACCCTCCATAGCTAAAATAAAAAGGAATAGGGAGAGAGGGTCTCCCTGTCGTAAACCTCTCTCAGAAGGAAAAAAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAATCCTATCCATTTAAGCCATTTGTCTCAAACCCCATCTGCCTCAGTATATTAAGTAGAAACTCCCAATTGACATGATCATATGCCTTTTCTACATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTCGAGTCTACACATTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATGAAGGCCATTTGGTGATTATTCACTAATTTGCTTATCACTTTCTTTAATCTCTCTGCCAACAGCTTGCCAAAAACCTTGTAAACTCCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCAAAGCTCCTGTCTTTTTTGGGATTAGAGCCACATAGGTGACGTTGAGACTCTTCTCTATTTCATGTCTTTCATCAAATTGTGTCACTGCATTCATGAAGTCTGCCTTCAGTATCTCCCAGAAGTTTTGGAAAAAACTCATCGGAAAGCCATCTGGTCCGGGGGCCTTATCACTAGTACATGCTTTTATGCAATTTAAAACTTCCTCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGCTTTCTGCTCCCTGTACTTTAATTTCTGGCCTCCATTGTTCTGTTTCTCTGTAAAGATTTTGATAGTAACTGATTATGGTTCCTATAATTTCTTCTGAATCTGTTACTGTAACCCCTTCAACCATCAGCTTATCTTATCAATGGTGTTGAATCTTTTATGAGCTGTAGCCATCCTGTGAAAATACTTGGTATTTCTGTCTCCGTGTTTGAGCCAGTGTATTCTTTCGATCCCTCTCCCCTTTTTCTTTCTACACCTGTCGTTATCCTCTCCCTCTTTTTCTTTGAACACCCCCCCCCCCCTCTTCCTCTTCTTCTTCCCCACCCTTCCTCCTCTACACCTTCCACCTTTCCCTTCCCCGCTCCTCCTTCAACAAATCTGTCAAAACTGTTGCGGGTCAGAATCTCTCTCAAAATTCTGAAATGTTGTTTTTTTAAAAAAATTGTAGAATTATCAAATGTTCTCAGAGTTAATTGAGCATTCATGTTTTTTCTTAAATTTTGATATCGGAAACATTATGCACTCTTCAAATAAATTATAGATTTTAAGTTGTACTTCATGTGAAATTAGTTGGTTTTTGAGTCATTATGATTGAAGTCCATCCTGTGCACTGCTTCAGTATGTTGTAATGTTAAAGCAATTCACTCTTATTATACAAGATGTTGTCGTATCAGTTCATATTTTTTCAGTTGGTTGTGGTGGTATATGGTGGAGGTGGGCAGAGGGTGGTGGAAAAAGTTGGAGTTAGAATAGGTCACTTCCATAATGTGTTGCCTCTTCTTTTTTTTTTTTGAGAAGGTAACGATTTGTATTATAAACCAATACTTATGTAGTACTGAAAGCCCCTTTACAAAAACGTATGAAATTCTAGGAACAAAAACAGCAAGCCTAGCATGATTCTAATACTTTTCTTTTTTTTGAAATAGATGATTCTAGTACTTCAAGGATTGCTTCTGCATCTACAGGGGAACTCTTTGTACACCAAAAACATAACAAAATACAATCTGTTTTGATCATCTGTAGGGATCTATCCTCAAAGCTTCTAGCATTCCTTTCTCTCCAAATGGTCCACCAGATGCATGCTGGAATTGTCCTCCAATAATTTCTGTTCTTTGCCTCAATTCCTGCATCCTCCCATCTTGAGAGAGTGTCAACAATCGTGCTAGGCATTGGTTATCCAGATTTGTCTCCAGGCCAATTGAGGGTTAGAGGAGTCCTGATCATGACCTTGTAACCTGAGCTCACTTTGAATCTTCCTTTGTTGTGCTCTGTCCACCGTAGGCAGTCCTCCCCTTCCTTCAAACCTTGAAATGATTCCAACCTTTTAAAGAATTCAACTAATCTACAAACTTCCCATTCATTTAAATTCCTTCTGATAGTTAGATCCCAACCTTGGGGAGACCACATTTCAGCCACTGTTCTGTCTTTATGCAGTGCTAAGTCAAAGATGTTGGGGAAGATCTCTGACAAATTTTGATTACCAAGCCATCTATCTTTCCAGAATTGTGTCCTGACACCATTGTGTACTGTTATAGTAGTATGATTCCTTAGGAAAGGCCACCAGTTCCTAATTGATCTCCAAACAGTAACACCATAGGGATTGGTTGCTTCCTTGGTGACCCATGAATCCATCTCTCCGTACTTCACTTTAATCACCTTGTTCCACATTGAGTGTGGTTCATGAGCATATCTCCACAACCATTTCAGCTTTAGAGCCTTCCTTTGGTTCTTCAATTTTTTTATGCCTAATCCTCGTTTTTTTCCTGTGATCATAAATCTCCATTTTACCAGATGGTATCCCTTTCTTTTCTTGTTTCCTTGCCAGAAAAAATCCTTTCTTAGTTTATCCAATCTCTATACTACTCCTACTCCTGCAGGTATTGGAAACAAAGTTAGCATGTACGTAGGAAGGGCATCCAAGACTGCATTTATCAGAGTGAGCCTGCCCCTTTTGATAAATATTGTGCTTTCAATCTGACTAACTTCTTCTCACATCTCTCCAAGACAGAATTTTTTAATTTCTTTGTACTGTGATTTTGCTCCCAATGGCATCCCAGGTAGATAGCAGGTAGTGCTCCCACCTCGCCTTCTAGCACTGAGGCCAAGAGCTCCATATTGGAGACCATGTTTATGGGATATAAATGGATCTTTCCCCATTGATGTGAAGACCTGACATACCTTCAAAAAGCACCAGAATTACCCTAGGGTATCTTAGTTGTTCCTCATCTGCATCACAAAAAATCAAAGTGTCATCTGCATATTTGTGTAACCTCCAAACTCTTCTCATTGTTTGTGGACACTTCAAATCCCGCGATCCACCTATTTGTTTTAGCTGTCTTGATCATGTTATTAAGTCCCTCCATGGCACGAATAAAGAGGAATGAAGATAAAGGATCCCCTTGTCTGATTCCTCTTTGGGCTTCAAAAAGACCTTCGGGAGCACCGTTAATGAGGACAGAAAACTTTACTGTTGAGATGCAAAACCGTATCCATCTAATCCACTTTTCTCCAAATCCCATTTTCCTGAGTATATTGAGAAGGAACCCCCAGTTAACATGATCATAAGCTTTCTCAGTGTCCAGTTTGCATAGGATGCCTGGTTTCTTTTGACCCACTCTAGAGTCTATTGCTTCATTTGCTATTAAGACCGCATCCATGATTTTTCTTCCTTTGATGAAAGCCATCTGTTGGGAGTCTACCAGCTTGTACATCGCCCTTTTGATTCTCTCTGTTAAAACTTTAGACAAGTTGTCATAGAAACTGCCTATCAAGCTTATTGGTCTGAAGTCTTTAAGTTCCTTTGCTCCTTTCTTCTTTGGGGTCAAGGCAATATAGGTAGCATTGAAACTCTTCTCAAACATTTCCTGCTCATAGAAATAATGGAAGGCCGCCATGATGTCATGCTTAAGAATTTCCCAACATTTGATGAAAAAACCCATAGTGTAACTATCAGGTCCTGGGGCTTTATCAATTACACATAACTTCAAGCATTTATAAACTTCCTGCTCCTCAAATTTGGCCTGTAGTTGTGATCTTTCTTCCTCTGATATTGAAGGACAATTCACTAAATTTCCGTCAGGTCTCCATCTTTATGTTTCAGTATACATTTTCTCATAAAACTTGATAATTTCCTCATTACTCTGTTTGGTTCTGTGATGGTCTTTCCCTCTACTTCCAATTGGTCAATATGGTTGCTTCTTTTATGGGAATTTGCAGAATTATGGAAGAATTTTGTATTGTTATCTCCTTCCTTCAACCACAAAATTCTAGAACTTTGTCTCCAAGCACATTCCTCATTTTTTATCAGTTCTTCGTACTCCATAAAGATCTCTGCCTTCAAAGTAGCCTCTTCCTCTGTCAATGCTCTTTTGTTCAGCAAAGAGGGATTTTTTAGCCTTTGAAGCTGTCACAGGGCTGGAAGCTTACCTTGCGAGGAGTCACCTGTTTAGTGTTGATATTGATGGTAATATTGAAGAGTTGGCTGAAATTGTGATGTAACGTTTCTTGTTGTATATTTGGGACTTCCTCTGAGTGTAAAAAACAATGATCAAATGATGGTCAATGAGTTCTAGACATGTGCAAAGAAACTGATCCCCCGGGAAAATAGTATTTATCTTTAAGTGGAAGGCGCACTCTAATCAACATAAGAAAGAGGGGATTGATCAAAAATCTCATCCTTTTCCTTGAAGGCTGATGTGATTTGTTTCCAAGATTCTAAAATGGAGGGGGATATGAAGGAAATAGTAAGAGAGTTATGGGGGGTCAGATGGATCAGTTATACTCAACTGGAGGCAAGTGATATTAGGGGAGGGATTATCCTAAAGTGGGACAACAGAATTTGGGAAGGGGAGATCAGCAGTATAGGCTCTTACTCTGTAACCTGTTATCTACAGTGATTACAGGTAATAATCAGGATTTCTCTTGGTATCTTACTGGAGTATATGCATTAAATGACATAATGGAAAGGGAAGAGGCATGGTGGGAAATTGCATCAGTTAGGGTCTCTGATTTCAGGTCCATGGGTTGTCTCTAGAGATTTCAACACGGTTAGACATCCATCAGAAAAGAAGAATTGCAACAGAATTAAAAAATCAATGACAGACTTCTCCGAATTCATTGAAGACATGGAGTTGATAGACTTCGATTTAACATGTGGTCAATTTTCCTGGAAACAGGGGGATAGACAGGCAACTGCTGCTAGACTAGATAGATTCCTAGTTTCAGAAGGATGGAACACACATTTAGGACTATAAGACAACTTGTTATTCTTAGATTGACCTCAGATCACACAACGCAGATGCTACAATGTGGTGAGTATGAACTCGATAAATCTTATTTCAAGTTTGAGAATTGGTAGCTTTAAACTGAAGATTTTGGTGACATTGGTGACAGAGTGAAGAACCGGTGGGAGTCTTTCCACTGCACAGGAAGGCCCGACTATATCTTGGCTTTCAAACTGAAAGTTATGAAAGGAGAAATTGAAGGAATGGAGTAAAATAGTCAAGGGTAATATGGAATTATAGAAACAGAACATACCAAACCATTTAACATAATTAAAGGAGCCAAGAACAGAGGATTTTGACAGAAGAAGAAATAACCAAGAGGCTAACTTTATCACTGGAATTTGAAGATATCGATAGGCATGAGGAGACTGCTTGGAGGCAAAGATCCTGGGTACTATGGGGCTAAATTAAGGAGATAGAAATACCAATTTTTTCACAGGACAACTAATGCACACAGGAGAATAAATACCATCGGTAAACTAGTAGGAAGAGGAGAAACTTTGACAGACCCAATCAACATCAAGAAAGAAATAATCTCTTTCTTGAGTTCTCTACTCAGAGACAGAGGAATGGATACCACACTCTGCTAGGAGCCTGCAGGAACTGTCCCATGGTCAGTGCAAAAGACAAACTAATGTTGATGGCCCCCTTTGAACCACAACAGATTCTGGACTGCTCTAGGACCAGATGGTTATACTCTGGCTTCTTCCACCAATGTTGGGCAGTGATTAGTTCAGATGTAGTAGCTGTAGTACAAAACTTTTTATAATGTAGGTTTCTTTCAGAAGAGATATAGTGCTATATTTGTAGCTCAACTCCAAAGAAAGTGGGTGCTATTGAATTAACTGATTCCAGCCAATCAACTTGATTGGGAGTGTCTACAAGATCTTTTCCATACTCTCAGCAGAAAGCTTGAAAAAAGTAACCCACAACTTGGTGCCAACAGATGGCCTTCATCAAAGGAAGACAAATCATGGATGCTAGCTACTATGATGGCAATTGAATGTGTTGAAGGAATGCAGAGGAGCAATTTGCCAGATATCTTATGCACACTAGATATCCAAGAAAACTTTTGGCCATCTTAACTGGAACTACCGTCTTGAACTATTACAGAAGATGGGATTTGGATCCAAGTGGATAAGGTGGATCAAACATTAAACCGGCAGAGTCAAATTCTCAGTATTGGTCAACAGAGCCCCCTACTGGTTTTTTCTCTTCCTACATAGGCTTGAGACAAGGAGCTATAGAAGGCATAAGCAATATGATATAGACTGCAAAATTAAATGGATGGGTCAAAGGTTCCCAAGCAATTCCCAGTACAGTGAACGACTTACAAATATCCACCTGCGGTATACTGTTGACACCCTGGTTTTCTGTGAGGCTTCCAAAGAACAAATTCTATTATTGAGAGTGATTGTCATCCTTTCTGAATCCATATATGCTTACACATTATTTGGATAAAGAGCTACATTTATCGTGTCAATGAAATGGCTGATATTCAATCCTTGGCTGATGTTTTAGGAGAGACATGAACACTTCCTACTAAATACTGGGGTATGCCTCTTGGTGCAAAGAGAAAATATGTGAGATATGGAATGAGGTGTAGAAAAATGTGAAAGAAGACTAACCAACTGGAGAAGTCAATATATCTTTATGGGAGGAAGATTGACTTTGAACAACAACATGCTTGATGCTTTACCCACATATATGATGTCTATCTTTCCCTCCCCTATATATGTGATAGAAAAGATAGACGCCTTAAGGAGGAATTTCTTCTGGCTAGACAATGATGACAAGAAAAAATTCATCTTGGGTAACTTTGACAAAAAAACAAGAAGAAAGGGGGAATGGGAGTCAGGAACATGTTGATGCACAATAGACGTCTGATTATGATGTGGTTGTGGAGATTTGATATAGATGACAACCAGCTTTGGAAACAAGTTGCTAAAGCTAAATATGGAAAAGAGGGGTTATGGACAACAAAGGTAGTGACTACTTTCTATGGATGCAACATCTGGAAATCTAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTGAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTATCTTGTGGGCCCAATGATGGTTGACTTTTTTTTCAAACTAGTGTCACGTAAGCTATAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAAAAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGGTTGAGGGGGTACTTGTGCATTTTTCCGGAAATCTATCCGAAACCTTTGGCCGATTTTCCAACAAAGAATAGGCTTCAAAATTGGGAATGGAATGAAAAATTTCCTGTTGGAATGACGTTTGGATTAGAGAAAACACACCCAATCATCTCTTTCCAAAATTATACAGCTTTTGTCAACAAGCATCAATAGCTGACATGTGGACAGACATGGATTAAAGACTTATTGACCCTGGGAATATAAGAAATCAATGTATTTAGGGAACCGAAACTTATCATCTGCCAAACTCAAAAGAAATGAAAAACGGGCAAGTATTGAGTCTCAGATTTAGAAGAATTTTTGAATAATTGAGAGATGGAAAAAATTGCAGATTTCCTCCACATTCTCAGTTAAATGGTTTTTTAGAAGAGGTGGATAGCTTAGTTTGACATTGTCACAGCAAAAGGGAAGTTTTTGTAAAGTCTATATCTCACTAGCTCCAACAATCAAGTGGGTTGTTCACTATGGAAGATGAGCTGGTGGTGAAAATTCCTTACAATGTAAGCTTGTTTCACATGGCTTTTTACTACAAAAAAGGTTCTGACAAATGAAATACTTGAGCAAGAGAGGAATGCAACTATACTCAGATGTTATCTCTTTGTAATGAACAAGTAGATATAGTTAACCACCATTTTTTTTGCACTGTAAATGGACATATCGACTATGGAAACTTTTGATCAACTTGAGGAAAATTTAGTGGGTGATGCCAAGAAGAATAAAGGGAGTGCTAAACTTAAGGAACAGTGATGGCAATGCAACTAGCAGGGAGGAGATATAGAAAGATCGTCTCAGCTTTATTTGGTGGTCAGTTTTGACTAAGAGAAATCAGAGATGTTTTGAGGGAAAACATTGTGACATCCAGAAGATCGTGATAAATTGCCTACCCCTCTATTATTTTTGGTGTAAACAGAAGTTGTTCATACAAACTGAAGATATTTTGTATGTTCACAGTTTATAATAGTTAAGTTTTAACAGATAAGACCCTTATGTAATCAGCCTACTTTTTTGTCGGACTAACAATTTCGTGATGTAGTATTCCTGTTGATATTAATTTTTACTTTTATGAAAAATTTACCAACTCAAAAATATCATTTGAATGATCATGATGCAATACGAAGAGCATATATTCAAAAGTCTTTTCCAATTTCAAAATTACAAGTTTCTTCAATGATGAGCTTTTGAGTAACTATTTGGTATTTATAGAAAAAAGAACATTTTTAATATTTCCAGTGAGTTTATGATGGACACGTCTTAGAAAATGAGAACTCTGAGGAGAGGTGCAACAAACAACAACATACCCAGTGAAACTCCACAAGGTTTAAGGAGGGTAGAATGTATGCAAACCTTACCACTATCTCGTGGAGGTAACGATATTGTTTTCTGAGAGACCCTCGGCTCAAGTGCAACAAATCCCGGTATAAAGGAGACAATGAAGATCGAGGAGAATTTGGCTAATAATGAGGAAATGATGCAAAAGTTTACCAGAGAGATTAATCATGTGATAATCCAAACTCCATAAACAACACACTAGGGTAGACTATTAAGAAAAAAACAAACAATTATAAAAATAAAAATAAAACAAAAGAAGTACAATAATGCAACTAGTACCATTGCAAACACCAGCCACCCTATGCACGACAACATTACACTACCTACTAATTTTCTACCCTAATACGTATCCTCCACACCCTCTTATCTAGGATCATATGGTCGGTAGCTTGAAACTGCATTATATCATGTCTTTCATATCTCCCTAATACTTCTTCGGCCTACCTCTGCCTCTCTTCATTCCTTCTATAAACAACCTCTTGTACCTCCCCATTGGTGCATCTATGCATTTCCTCTTCACATGTCCAAACCATCTGAGTCTCGCTTCTCTCATTTATCTACCACTGAGGCCCATCCCACCTTATTTTGAATATCCTCATTTCTAACTTTATCACTACCTAGTATTATGGGTGGGCGTTCAGTTCTTTGGTTCGGTTTTATCAAATTTCACTTCGGTTTTTCGATTTTCTGTTTTAGAAAAGTGTGCACCATATACCAAACCAAAGTAATTTGGTTCCATTCGGTTTAGTTAGGTGTTTTTAAATTGGTTTTTCGGTTCGAATGAAAAATAAAATGAGGACAAAGTCAAAGTGTAAGATAATTAAAATTTAAAAATATGTTGAGGGATCATGTGTCTCTCATGGAACGCTTGTTGTGCTAACTAAAAGACTAATCATCTTTGTCAAGAACATTGTGCCTTCAACTATTTCTCTAGAAAAACAAGGACGAAGACGGGTTCCTTAACATAACATACATTGATAAAAATATGTTTTGGTTATTCTTGAAAACTAATATTTGAAGTTAACTATTAATTATACATTTGTTTTGTTTTTTTTAATTTGTTCATGAATGATTTAATTGTTAGTTGAATTTTTATTATTAATTTGTATTTTTTTCAATAAAAGTTCGGTTCTTCGGTGCACTGAAGTTCTAAGACCCTTACACCGAACTAAGGAACCGAACTTTTGAAAAAATAACACCGACACCGAATCGAAAATTGAAGAACTGAATTAGTTCGGTTCGATTTTTCAGTTTCCCGGTATTTATGCCCACCTGTACCTAGTATGGCCACACATCCACGGACCAAACATCCATCGCAACATTCTCATCTCTGCAACTTGCATCTCTTGGACATGGGAGTTCTTAAGTAGCCAACATTCAGTTCCATACAAAAATGTTGGTCGAACCACCTTGCTACACTACTTACCTTTGAGTTCCAGTGGTACCCTTTTATCACACAAGACTCTAGAGGCAAGCCTTCACTTCATCCATGTCACACCGATACGATGTGTGATATCATCGTCGATGTCCTTGCTCCCTTGACGTATAGATCCAAGATACTTGAATATATCTCACTTGGGGATATTTTGTGTGTCAAGCCTCACTTCCATGCTTACCTCATGCATCACATCATTGAATTTGCACTCCACATATTCTGTCTTGGTCCAGCTCAACCTCAGCCCTTTAGCCTCCAAAGTATGTCTCCACATCTCTAACTTAACATTAACTCCAAAGGTGTAGTAGTGTGCTTGAATTTATTTTTCTAATATATGGCATTGTTATATTAATTTATTCACTTCTTTAAATGTCGACGGTGCTTATGGAAAATCATGTGTAAGTCACTGGAAGATAACTCTAGGTTCTTACAAGTTGTCACATTTTACTGAGTGCTATATATTTGGAGTGTATTGTTAAGCTTAAAAAGTTCTATTGTAAGATTTCACAGCATGATATTAACATTATCTTTTGGCATTTTATAGAGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAAGTTAAAGTTCTCCCACATCTCACTCTCAACTCTATGAATGACATTTTCTGACGGTTGATAATTATCCATCTGTACAGCTTTTCTCAAAATTAGGAATGTATGAAGCTGATTTGCTTGGTTTAGACTTGTGAATGTTCCATTCTGGTCTTGGAGCACGCTATACATCCTAAGGATGAGTGATAAATTAGGGATGTTAAATGATTTTAAACATTTTGAGACAATTTTTTATCTCGTAGGCAGTAGGAGGAACTTGAAAAAGATTCGAAGAGAAAAAAGCAAGAATTTCTTCATTTATCTGCAAATGCTCTGCTATGCCATATCTGCTGCATGGTGCTAATATGAACATTTGTCATTTAGAAGTCCAAGCGAAGTATTCGAATTAGAGAGTCAGTTAAACAAAATACCATTGCAAGTAGCATTTTTGACAGTTTATCATATGTCTATCAAATCAAGGAGAAAATATCCCGAATGCTCAAATTTTAGTTACCAAGAAAAGAAAAAAAATCTGGGTACATAAAAAAGAAAAAGCTCCAAATTTTTTAATATATCTTGTTGCTTGGTTTGAAAATGGTGTTGCACTGATGTTTTATATTCCTTCACATGTTCGACTAATTCTAGGCAGTTCTTTTTTCTTTTCATTTAGTTATGTAGTTTGTAATTTCTTTTTCTTAACTAGTCTATTGATTGTTGTACAGAGAGATACTTAGGCTTCTTCCTACTACAAAATAGATGATCAACTGCTGAAAAAATTCTCTTATTTTATCATTCAATTTCAGGTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAGGTACTACGTCGTACATTCACCTGTCAACCTGAACAATGTTGTTTAACTATAACGTAACACGGTAACATTATAGCTACGCAGTTAAGGCTGTATATTAAAATTTGTTGTACCTGCACAGGATGATCAGTCTATTGGGTAGATGTAAGAAAATTTTAGAATGTCCTTGGAACACTGATGATTTCTCTAGGTCAGAGAGAGTTCCATAATTGATTTTGTTCCTGTAAGCTTCCTGATTTATTTTCTTGAACAAGGTTGGCTGCAAAAGATCATGTCACGAATATGATATTATTATTCTACACTGCCAGATGGAACACCTTCAAATTGATGACAAGAGGAGCATGCTTAGTATGTACATCAGTAAATAAAAGGACCAATTTTAACCAAAATGCAAATTGGACCATCATTGCATGTCAACTTTGTTTTTTTAGTCACACATGATGCTATTTGTGTTTTTAATCTTTCACGCAGTGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAGGTCATACTTCCATCATTCTGCCTCAGTTATAATTCCTATATGAATTCCCTACATCCTTTCTTCTCTATCCAAATAATAAATAGCGTCTTTCAACCTCAGTGATTCTTTATATCTCAATTATCCCTGCAATAGTTATCTAGTTTAATCTGAACGAGTGGCGGCTTTTGCCTAGTAGTTATTTTTTACCTTTTCTTTCTTCAGTCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGG</genome_strand>
        <mrna_strand>TACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACAAACATTGTCGCCGGCGAGACATCACCGCAATTTTAGCTTAACTTGCGCGTTATTACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGAGTCTTGCTTCAATGGCTAGCTCTACCTAAAG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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.....................................................................................................................................................................................................................................TGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGTTAGTGCCTTAAATGCATTGGACAG.........................................................................................................................................................................................................TCTTCTTAAAACCGTCCCAGCTGATGTGCTTG-AAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613319" ref_strand="+" ref_description="SGN-E613319 [63092]">
      <seq>tacacccctgcgcatgttaccaccagcgtcttaaattcccggctcctccgctctccggcacgacaaacattgtcgccggcgagatatcaccgcaattttagcttaacttgcgcgttattaccggagacaaggcgggaaagcagacgattggtcaacatagcccttggagtcttgcttcaatggctagctctacctaaagatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattagagaaatctttggaggttgatcaacctaaatatggagattcgccggaatatattgcgttctggtcctgcatcatctcttcgtgtcaatattcgagcagtagcacaatacgcagctgatggtggcaatggtaaatcagctttcagtgatgttgatcagtgtctgagtgcattggaaggacttgactcgttgcttttgcgtgcatcaagaaaggatccaggcgcctcaattgactcaatgaaggcacaaatgttagtgccttaaatgcattggaccagtcttctttaaaaccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41542" stop="62477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41842" g_stop="42040" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="239" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="310" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60647" g_stop="60741" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="406" r_length="96" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61522" g_stop="61589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="474" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61590" i_stop="62057" i_length="468">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62058" g_stop="62168" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="585" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201">
            <donor d_prob="0.976" d_score="0.90"/>
            <acceptor a_prob="0.673" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62370" g_stop="62385" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="602" r_length="17" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E613319" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41842" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="60647" e_stop="60741"/>
          <exon e_start="61522" e_stop="61589"/>
          <exon e_start="62058" e_stop="62168"/>
          <exon e_start="62370" e_stop="62385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTCTAACGAACCAACGCCATAGGTCGTAGGAAGAAAACATTCGGTTTCATACTACAGTGCCCCATAACCAGATCCATATCAGGGGACCATAACATCATGCTGCAATCAGTGTGTCTATTTAGATCGAGTATTTCAATGATCTTTAAAGCAATACAGAGATATACTAGATTTAAAGGAGTAACAATGGATAGACACCCGAAGTTGGCACCACGGTCAGATAGACACTTTAAATGTGCCAGTGATCATTAGACACCTTTTCTTGATAGAAATTTGTATCATGAACATCTATCTGCGAGATCACCCGCTTGAGACTCACTCTTTGCTGATATCAGATGGTCAAATGAAATAATGACATCTGTAATCTATTTTTTTTAATAAAAATAGAATTAGAATAACTTATAAAATACAAATTTTATTTATTTACCTATACCATAAGATGGTAGATTTCCTAGGATCAATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACTTTATCAAAAAAAAAAAAACTATACTATAAGATGGAGTTTACATGCCAAAGCAGGCAGTGGGTCAACATGTCTACTTTGGCATGTAAGGTAGTTAGGTGATTTTAAATAAAATTAAATAACATGATTGGCTTAAAAACAAGTTAGAAACTTAAATGATAATGTCACTAAAACACAGGTGGTTAGAGAATCTTGAAAAAGGTAACGTTTGGCAGCTACTGAGATGCATTTGGCGGAGCTCAAATTCATTTAGGTGATTTCAAAAAAATTCTTGAGTTATTTGTTTGTATTTTTTTTAATTTGTTATATATTTGAAAATTGTGTATTATAAGAGGGAGTTTGCATGCCAAAGCAGGCAGCAGGTCAACATGTCTTCTTTGACATGTAAAGTTAGCTGGGTTATTTTAAATAAGATTTAATAACATGACTGGCTATAAAACAAGGTAGAAACTTAAATTACAATGACACTAAAACACATGTGGTTACATAATATTGAAAGGGGTAACTTTTGGCAGGTACTGAGACGCATTTGGTGGAGCTTAAATCCATTCAGGTGTTCTTAAAAGAATTCTTGACTTATTTGTTTGTATTTTTTTAATTAGCTAAATATTTAAAAATTTTCATAAAAAATATCATTAATCAGAATAATTAGCAACTTATAATATTTAAAAGACAAAAAATCGAATTGACTCTCGAATTCTATTAGTGCCACATAAATTGGAGAAGAGGAAGTAACATGTATTATCTGAAAATTAAGCTAAAAGTACTATCAATCTCAATAATTAATAATTCAAAATATTTAAAAATCATATAACAATTTAGTTGACTCTCCTAATTCCATCCATGCAGTATAAAATTGAGATAAATAGAGTAACACATATTGAGCATGTGTTTGCACGGGCTCTCCAGTAAATATGAGAAAAGCACTCTGTTCCTCTAATTTCTTTCATCAAATGTTTCAGAACTGAACCTCCGATCCCCCCCCCCCCCCCCTTTTTTTTTTTTAAGTTGTATTCTTCAGCATTAAGGTATGCTGGCTACCTCCAAAAAATTACAAGCTAAAACCATAATTACATTGATCCTAGGAAATCTACCAACTGTTCTGCTACTTCTATACCTTCTTCTTTACACCAAAAAATCAACATGTTAATGCGATTTTCTTTAACTTTCTGCATAGTGTTAGTAATATTCTCATGACACCTAAGATCTCTTTCTCTCCAAATAGTCCACCAGACACAAGCTGGTACTATAGACCACCATTTGTTTTATGTCTTGCTCCCCCCCCCCCCCCCCCTCATCCAGCAGCTCAAAAGATCAGCAGTATGTTCTGGCATCACCCAAGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGAACAGTAACCCTACAGTGTAGAAATAAGTGGTTGTTCGTTTCTTCCTTCTCATGACAAAAAAAACATTTGGAGACAATCTGGAAGCCTCTTTTTCTGAGTTTCTCCTGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAACATTTTACCCTGGTTGGAGTGTTGCCCTCCCATATTTGTTTCCATGGACCATGAATTCCCCCAGAGTGAGTCATGACCTCTCTCCTATACAGTCTACGTACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCCGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCGTTTAGATTTCTCCTGAAGGTGAGGTTCCATCCCTGACGGGACCAAATCTCAGAAATTTTAGCCTCAGGATTGGTGCAGAACGAGAAGAGATCAGGGAAAACCGTGTTTAGACAGTCTTGTCCAATCCACTTGTCCCTCCCAAAAAATACTTTGTTGCCCTCTCCCACCTTGACCACCAAATTCTTCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACCCCATATGTGCTATCTACTACATTAGACATCCACTCCTCGGTCTGCCCATACTTGTTGAGAATTGCTCTTCTCCATAATGCCTGATCTTCAACCACAAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCCTCAGATTTTTTATGCCAAGACCCCCTGTCTTCTTGCTTAGTAAGGCTGTCTGCCATTTAACTGAAGTGTATTTTTTCTTCTTCTTTGTTCCCCGACCATAGGAAATCCCGCCTCAATTTATCCAACCTCTCTTCTACCTTTGCTGGTAGAGGGAAAGGAGACATAACATATGTAGGCAACACATCTAGGACCGAATAGATCAGAGTGACTCTTCCTCCCAGAGATAGATAGTTTGTCTTCCAATTAGCCAACCTCTTCTCTGTCTTCTCAATGATTCAATCCCAAATCACCAGCTCCTTATGATTATTCCCCAAAGGCATTCCCAACATCTGAATATTTGCCACTTCCTTGACTTGGAAGATGCTGCTTTTCGCCCAGTTCACAGCCAGTCCGGAGACGGCCTCAAAAATCACCAAAACAACTTTAATGTAACTAACTTGTTCAGCCTTTGCATCGCAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATCTGCAAATTGAGTCCTGACTGATTACTAATGTTGAAACCCTTTATCCAGTCCTTCTGATTGGCCGCTCTAATCATACTGTTAAGACCCTCCATAGCTAAAATAAAAAGGAATAGGGAGAGAGGGTCTCCCTGTCGTAAACCTCTCTCAGAAGGAAAAAAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAATCCTATCCATTTAAGCCATTTGTCTCAAACCCCATCTGCCTCAGTATATTAAGTAGAAACTCCCAATTGACATGATCATATGCCTTTTCTACATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTCGAGTCTACACATTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATGAAGGCCATTTGGTGATTATTCACTAATTTGCTTATCACTTTCTTTAATCTCTCTGCCAACAGCTTGCCAAAAACCTTGTAAACTCCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCAAAGCTCCTGTCTTTTTTGGGATTAGAGCCACATAGGTGACGTTGAGACTCTTCTCTATTTCATGTCTTTCATCAAATTGTGTCACTGCATTCATGAAGTCTGCCTTCAGTATCTCCCAGAAGTTTTGGAAAAAACTCATCGGAAAGCCATCTGGTCCGGGGGCCTTATCACTAGTACATGCTTTTATGCAATTTAAAACTTCCTCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGCTTTCTGCTCCCTGTACTTTAATTTCTGGCCTCCATTGTTCTGTTTCTCTGTAAAGATTTTGATAGTAACTGATTATGGTTCCTATAATTTCTTCTGAATCTGTTACTGTAACCCCTTCAACCATCAGCTTATCTTATCAATGGTGTTGAATCTTTTATGAGCTGTAGCCATCCTGTGAAAATACTTGGTATTTCTGTCTCCGTGTTTGAGCCAGTGTATTCTTTCGATCCCTCTCCCCTTTTTCTTTCTACACCTGTCGTTATCCTCTCCCTCTTTTTCTTTGAACACCCCCCCCCCCCTCTTCCTCTTCTTCTTCCCCACCCTTCCTCCTCTACACCTTCCACCTTTCCCTTCCCCGCTCCTCCTTCAACAAATCTGTCAAAACTGTTGCGGGTCAGAATCTCTCTCAAAATTCTGAAATGTTGTTTTTTTAAAAAAATTGTAGAATTATCAAATGTTCTCAGAGTTAATTGAGCATTCATGTTTTTTCTTAAATTTTGATATCGGAAACATTATGCACTCTTCAAATAAATTATAGATTTTAAGTTGTACTTCATGTGAAATTAGTTGGTTTTTGAGTCATTATGATTGAAGTCCATCCTGTGCACTGCTTCAGTATGTTGTAATGTTAAAGCAATTCACTCTTATTATACAAGATGTTGTCGTATCAGTTCATATTTTTTCAGTTGGTTGTGGTGGTATATGGTGGAGGTGGGCAGAGGGTGGTGGAAAAAGTTGGAGTTAGAATAGGTCACTTCCATAATGTGTTGCCTCTTCTTTTTTTTTTTTGAGAAGGTAACGATTTGTATTATAAACCAATACTTATGTAGTACTGAAAGCCCCTTTACAAAAACGTATGAAATTCTAGGAACAAAAACAGCAAGCCTAGCATGATTCTAATACTTTTCTTTTTTTTGAAATAGATGATTCTAGTACTTCAAGGATTGCTTCTGCATCTACAGGGGAACTCTTTGTACACCAAAAACATAACAAAATACAATCTGTTTTGATCATCTGTAGGGATCTATCCTCAAAGCTTCTAGCATTCCTTTCTCTCCAAATGGTCCACCAGATGCATGCTGGAATTGTCCTCCAATAATTTCTGTTCTTTGCCTCAATTCCTGCATCCTCCCATCTTGAGAGAGTGTCAACAATCGTGCTAGGCATTGGTTATCCAGATTTGTCTCCAGGCCAATTGAGGGTTAGAGGAGTCCTGATCATGACCTTGTAACCTGAGCTCACTTTGAATCTTCCTTTGTTGTGCTCTGTCCACCGTAGGCAGTCCTCCCCTTCCTTCAAACCTTGAAATGATTCCAACCTTTTAAAGAATTCAACTAATCTACAAACTTCCCATTCATTTAAATTCCTTCTGATAGTTAGATCCCAACCTTGGGGAGACCACATTTCAGCCACTGTTCTGTCTTTATGCAGTGCTAAGTCAAAGATGTTGGGGAAGATCTCTGACAAATTTTGATTACCAAGCCATCTATCTTTCCAGAATTGTGTCCTGACACCATTGTGTACTGTTATAGTAGTATGATTCCTTAGGAAAGGCCACCAGTTCCTAATTGATCTCCAAACAGTAACACCATAGGGATTGGTTGCTTCCTTGGTGACCCATGAATCCATCTCTCCGTACTTCACTTTAATCACCTTGTTCCACATTGAGTGTGGTTCATGAGCATATCTCCACAACCATTTCAGCTTTAGAGCCTTCCTTTGGTTCTTCAATTTTTTTATGCCTAATCCTCGTTTTTTTCCTGTGATCATAAATCTCCATTTTACCAGATGGTATCCCTTTCTTTTCTTGTTTCCTTGCCAGAAAAAATCCTTTCTTAGTTTATCCAATCTCTATACTACTCCTACTCCTGCAGGTATTGGAAACAAAGTTAGCATGTACGTAGGAAGGGCATCCAAGACTGCATTTATCAGAGTGAGCCTGCCCCTTTTGATAAATATTGTGCTTTCAATCTGACTAACTTCTTCTCACATCTCTCCAAGACAGAATTTTTTAATTTCTTTGTACTGTGATTTTGCTCCCAATGGCATCCCAGGTAGATAGCAGGTAGTGCTCCCACCTCGCCTTCTAGCACTGAGGCCAAGAGCTCCATATTGGAGACCATGTTTATGGGATATAAATGGATCTTTCCCCATTGATGTGAAGACCTGACATACCTTCAAAAAGCACCAGAATTACCCTAGGGTATCTTAGTTGTTCCTCATCTGCATCACAAAAAATCAAAGTGTCATCTGCATATTTGTGTAACCTCCAAACTCTTCTCATTGTTTGTGGACACTTCAAATCCCGCGATCCACCTATTTGTTTTAGCTGTCTTGATCATGTTATTAAGTCCCTCCATGGCACGAATAAAGAGGAATGAAGATAAAGGATCCCCTTGTCTGATTCCTCTTTGGGCTTCAAAAAGACCTTCGGGAGCACCGTTAATGAGGACAGAAAACTTTACTGTTGAGATGCAAAACCGTATCCATCTAATCCACTTTTCTCCAAATCCCATTTTCCTGAGTATATTGAGAAGGAACCCCCAGTTAACATGATCATAAGCTTTCTCAGTGTCCAGTTTGCATAGGATGCCTGGTTTCTTTTGACCCACTCTAGAGTCTATTGCTTCATTTGCTATTAAGACCGCATCCATGATTTTTCTTCCTTTGATGAAAGCCATCTGTTGGGAGTCTACCAGCTTGTACATCGCCCTTTTGATTCTCTCTGTTAAAACTTTAGACAAGTTGTCATAGAAACTGCCTATCAAGCTTATTGGTCTGAAGTCTTTAAGTTCCTTTGCTCCTTTCTTCTTTGGGGTCAAGGCAATATAGGTAGCATTGAAACTCTTCTCAAACATTTCCTGCTCATAGAAATAATGGAAGGCCGCCATGATGTCATGCTTAAGAATTTCCCAACATTTGATGAAAAAACCCATAGTGTAACTATCAGGTCCTGGGGCTTTATCAATTACACATAACTTCAAGCATTTATAAACTTCCTGCTCCTCAAATTTGGCCTGTAGTTGTGATCTTTCTTCCTCTGATATTGAAGGACAATTCACTAAATTTCCGTCAGGTCTCCATCTTTATGTTTCAGTATACATTTTCTCATAAAACTTGATAATTTCCTCATTACTCTGTTTGGTTCTGTGATGGTCTTTCCCTCTACTTCCAATTGGTCAATATGGTTGCTTCTTTTATGGGAATTTGCAGAATTATGGAAGAATTTTGTATTGTTATCTCCTTCCTTCAACCACAAAATTCTAGAACTTTGTCTCCAAGCACATTCCTCATTTTTTATCAGTTCTTCGTACTCCATAAAGATCTCTGCCTTCAAAGTAGCCTCTTCCTCTGTCAATGCTCTTTTGTTCAGCAAAGAGGGATTTTTTAGCCTTTGAAGCTGTCACAGGGCTGGAAGCTTACCTTGCGAGGAGTCACCTGTTTAGTGTTGATATTGATGGTAATATTGAAGAGTTGGCTGAAATTGTGATGTAACGTTTCTTGTTGTATATTTGGGACTTCCTCTGAGTGTAAAAAACAATGATCAAATGATGGTCAATGAGTTCTAGACATGTGCAAAGAAACTGATCCCCCGGGAAAATAGTATTTATCTTTAAGTGGAAGGCGCACTCTAATCAACATAAGAAAGAGGGGATTGATCAAAAATCTCATCCTTTTCCTTGAAGGCTGATGTGATTTGTTTCCAAGATTCTAAAATGGAGGGGGATATGAAGGAAATAGTAAGAGAGTTATGGGGGGTCAGATGGATCAGTTATACTCAACTGGAGGCAAGTGATATTAGGGGAGGGATTATCCTAAAGTGGGACAACAGAATTTGGGAAGGGGAGATCAGCAGTATAGGCTCTTACTCTGTAACCTGTTATCTACAGTGATTACAGGTAATAATCAGGATTTCTCTTGGTATCTTACTGGAGTATATGCATTAAATGACATAATGGAAAGGGAAGAGGCATGGTGGGAAATTGCATCAGTTAGGGTCTCTGATTTCAGGTCCATGGGTTGTCTCTAGAGATTTCAACACGGTTAGACATCCATCAGAAAAGAAGAATTGCAACAGAATTAAAAAATCAATGACAGACTTCTCCGAATTCATTGAAGACATGGAGTTGATAGACTTCGATTTAACATGTGGTCAATTTTCCTGGAAACAGGGGGATAGACAGGCAACTGCTGCTAGACTAGATAGATTCCTAGTTTCAGAAGGATGGAACACACATTTAGGACTATAAGACAACTTGTTATTCTTAGATTGACCTCAGATCACACAACGCAGATGCTACAATGTGGTGAGTATGAACTCGATAAATCTTATTTCAAGTTTGAGAATTGGTAGCTTTAAACTGAAGATTTTGGTGACATTGGTGACAGAGTGAAGAACCGGTGGGAGTCTTTCCACTGCACAGGAAGGCCCGACTATATCTTGGCTTTCAAACTGAAAGTTATGAAAGGAGAAATTGAAGGAATGGAGTAAAATAGTCAAGGGTAATATGGAATTATAGAAACAGAACATACCAAACCATTTAACATAATTAAAGGAGCCAAGAACAGAGGATTTTGACAGAAGAAGAAATAACCAAGAGGCTAACTTTATCACTGGAATTTGAAGATATCGATAGGCATGAGGAGACTGCTTGGAGGCAAAGATCCTGGGTACTATGGGGCTAAATTAAGGAGATAGAAATACCAATTTTTTCACAGGACAACTAATGCACACAGGAGAATAAATACCATCGGTAAACTAGTAGGAAGAGGAGAAACTTTGACAGACCCAATCAACATCAAGAAAGAAATAATCTCTTTCTTGAGTTCTCTACTCAGAGACAGAGGAATGGATACCACACTCTGCTAGGAGCCTGCAGGAACTGTCCCATGGTCAGTGCAAAAGACAAACTAATGTTGATGGCCCCCTTTGAACCACAACAGATTCTGGACTGCTCTAGGACCAGATGGTTATACTCTGGCTTCTTCCACCAATGTTGGGCAGTGATTAGTTCAGATGTAGTAGCTGTAGTACAAAACTTTTTATAATGTAGGTTTCTTTCAGAAGAGATATAGTGCTATATTTGTAGCTCAACTCCAAAGAAAGTGGGTGCTATTGAATTAACTGATTCCAGCCAATCAACTTGATTGGGAGTGTCTACAAGATCTTTTCCATACTCTCAGCAGAAAGCTTGAAAAAAGTAACCCACAACTTGGTGCCAACAGATGGCCTTCATCAAAGGAAGACAAATCATGGATGCTAGCTACTATGATGGCAATTGAATGTGTTGAAGGAATGCAGAGGAGCAATTTGCCAGATATCTTATGCACACTAGATATCCAAGAAAACTTTTGGCCATCTTAACTGGAACTACCGTCTTGAACTATTACAGAAGATGGGATTTGGATCCAAGTGGATAAGGTGGATCAAACATTAAACCGGCAGAGTCAAATTCTCAGTATTGGTCAACAGAGCCCCCTACTGGTTTTTTCTCTTCCTACATAGGCTTGAGACAAGGAGCTATAGAAGGCATAAGCAATATGATATAGACTGCAAAATTAAATGGATGGGTCAAAGGTTCCCAAGCAATTCCCAGTACAGTGAACGACTTACAAATATCCACCTGCGGTATACTGTTGACACCCTGGTTTTCTGTGAGGCTTCCAAAGAACAAATTCTATTATTGAGAGTGATTGTCATCCTTTCTGAATCCATATATGCTTACACATTATTTGGATAAAGAGCTACATTTATCGTGTCAATGAAATGGCTGATATTCAATCCTTGGCTGATGTTTTAGGAGAGACATGAACACTTCCTACTAAATACTGGGGTATGCCTCTTGGTGCAAAGAGAAAATATGTGAGATATGGAATGAGGTGTAGAAAAATGTGAAAGAAGACTAACCAACTGGAGAAGTCAATATATCTTTATGGGAGGAAGATTGACTTTGAACAACAACATGCTTGATGCTTTACCCACATATATGATGTCTATCTTTCCCTCCCCTATATATGTGATAGAAAAGATAGACGCCTTAAGGAGGAATTTCTTCTGGCTAGACAATGATGACAAGAAAAAATTCATCTTGGGTAACTTTGACAAAAAAACAAGAAGAAAGGGGGAATGGGAGTCAGGAACATGTTGATGCACAATAGACGTCTGATTATGATGTGGTTGTGGAGATTTGATATAGATGACAACCAGCTTTGGAAACAAGTTGCTAAAGCTAAATATGGAAAAGAGGGGTTATGGACAACAAAGGTAGTGACTACTTTCTATGGATGCAACATCTGGAAATCTAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTGAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTATCTTGTGGGCCCAATGATGGTTGACTTTTTTTTCAAACTAGTGTCACGTAAGCTATAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAAAAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGGTTGAGGGGGTACTTGTGCATTTTTCCGGAAATCTATCCGAAACCTTTGGCCGATTTTCCAACAAAGAATAGGCTTCAAAATTGGGAATGGAATGAAAAATTTCCTGTTGGAATGACGTTTGGATTAGAGAAAACACACCCAATCATCTCTTTCCAAAATTATACAGCTTTTGTCAACAAGCATCAATAGCTGACATGTGGACAGACATGGATTAAAGACTTATTGACCCTGGGAATATAAGAAATCAATGTATTTAGGGAACCGAAACTTATCATCTGCCAAACTCAAAAGAAATGAAAAACGGGCAAGTATTGAGTCTCAGATTTAGAAGAATTTTTGAATAATTGAGAGATGGAAAAAATTGCAGATTTCCTCCACATTCTCAGTTAAATGGTTTTTTAGAAGAGGTGGATAGCTTAGTTTGACATTGTCACAGCAAAAGGGAAGTTTTTGTAAAGTCTATATCTCACTAGCTCCAACAATCAAGTGGGTTGTTCACTATGGAAGATGAGCTGGTGGTGAAAATTCCTTACAATGTAAGCTTGTTTCACATGGCTTTTTACTACAAAAAAGGTTCTGACAAATGAAATACTTGAGCAAGAGAGGAATGCAACTATACTCAGATGTTATCTCTTTGTAATGAACAAGTAGATATAGTTAACCACCATTTTTTTTGCACTGTAAATGGACATATCGACTATGGAAACTTTTGATCAACTTGAGGAAAATTTAGTGGGTGATGCCAAGAAGAATAAAGGGAGTGCTAAACTTAAGGAACAGTGATGGCAATGCAACTAGCAGGGAGGAGATATAGAAAGATCGTCTCAGCTTTATTTGGTGGTCAGTTTTGACTAAGAGAAATCAGAGATGTTTTGAGGGAAAACATTGTGACATCCAGAAGATCGTGATAAATTGCCTACCCCTCTATTATTTTTGGTGTAAACAGAAGTTGTTCATACAAACTGAAGATATTTTGTATGTTCACAGTTTATAATAGTTAAGTTTTAACAGATAAGACCCTTATGTAATCAGCCTACTTTTTTGTCGGACTAACAATTTCGTGATGTAGTATTCCTGTTGATATTAATTTTTACTTTTATGAAAAATTTACCAACTCAAAAATATCATTTGAATGATCATGATGCAATACGAAGAGCATATATTCAAAAGTCTTTTCCAATTTCAAAATTACAAGTTTCTTCAATGATGAGCTTTTGAGTAACTATTTGGTATTTATAGAAAAAAGAACATTTTTAATATTTCCAGTGAGTTTATGATGGACACGTCTTAGAAAATGAGAACTCTGAGGAGAGGTGCAACAAACAACAACATACCCAGTGAAACTCCACAAGGTTTAAGGAGGGTAGAATGTATGCAAACCTTACCACTATCTCGTGGAGGTAACGATATTGTTTTCTGAGAGACCCTCGGCTCAAGTGCAACAAATCCCGGTATAAAGGAGACAATGAAGATCGAGGAGAATTTGGCTAATAATGAGGAAATGATGCAAAAGTTTACCAGAGAGATTAATCATGTGATAATCCAAACTCCATAAACAACACACTAGGGTAGACTATTAAGAAAAAAACAAACAATTATAAAAATAAAAATAAAACAAAAGAAGTACAATAATGCAACTAGTACCATTGCAAACACCAGCCACCCTATGCACGACAACATTACACTACCTACTAATTTTCTACCCTAATACGTATCCTCCACACCCTCTTATCTAGGATCATATGGTCGGTAGCTTGAAACTGCATTATATCATGTCTTTCATATCTCCCTAATACTTCTTCGGCCTACCTCTGCCTCTCTTCATTCCTTCTATAAACAACCTCTTGTACCTCCCCATTGGTGCATCTATGCATTTCCTCTTCACATGTCCAAACCATCTGAGTCTCGCTTCTCTCATTTATCTACCACTGAGGCCCATCCCACCTTATTTTGAATATCCTCATTTCTAACTTTATCACTACCTAGTATTATGGGTGGGCGTTCAGTTCTTTGGTTCGGTTTTATCAAATTTCACTTCGGTTTTTCGATTTTCTGTTTTAGAAAAGTGTGCACCATATACCAAACCAAAGTAATTTGGTTCCATTCGGTTTAGTTAGGTGTTTTTAAATTGGTTTTTCGGTTCGAATGAAAAATAAAATGAGGACAAAGTCAAAGTGTAAGATAATTAAAATTTAAAAATATGTTGAGGGATCATGTGTCTCTCATGGAACGCTTGTTGTGCTAACTAAAAGACTAATCATCTTTGTCAAGAACATTGTGCCTTCAACTATTTCTCTAGAAAAACAAGGACGAAGACGGGTTCCTTAACATAACATACATTGATAAAAATATGTTTTGGTTATTCTTGAAAACTAATATTTGAAGTTAACTATTAATTATACATTTGTTTTGTTTTTTTTAATTTGTTCATGAATGATTTAATTGTTAGTTGAATTTTTATTATTAATTTGTATTTTTTTCAATAAAAGTTCGGTTCTTCGGTGCACTGAAGTTCTAAGACCCTTACACCGAACTAAGGAACCGAACTTTTGAAAAAATAACACCGACACCGAATCGAAAATTGAAGAACTGAATTAGTTCGGTTCGATTTTTCAGTTTCCCGGTATTTATGCCCACCTGTACCTAGTATGGCCACACATCCACGGACCAAACATCCATCGCAACATTCTCATCTCTGCAACTTGCATCTCTTGGACATGGGAGTTCTTAAGTAGCCAACATTCAGTTCCATACAAAAATGTTGGTCGAACCACCTTGCTACACTACTTACCTTTGAGTTCCAGTGGTACCCTTTTATCACACAAGACTCTAGAGGCAAGCCTTCACTTCATCCATGTCACACCGATACGATGTGTGATATCATCGTCGATGTCCTTGCTCCCTTGACGTATAGATCCAAGATACTTGAATATATCTCACTTGGGGATATTTTGTGTGTCAAGCCTCACTTCCATGCTTACCTCATGCATCACATCATTGAATTTGCACTCCACATATTCTGTCTTGGTCCAGCTCAACCTCAGCCCTTTAGCCTCCAAAGTATGTCTCCACATCTCTAACTTAACATTAACTCCAAAGGTGTAGTAGTGTGCTTGAATTTATTTTTCTAATATATGGCATTGTTATATTAATTTATTCACTTCTTTAAATGTCGACGGTGCTTATGGAAAATCATGTGTAAGTCACTGGAAGATAACTCTAGGTTCTTACAAGTTGTCACATTTTACTGAGTGCTATATATTTGGAGTGTATTGTTAAGCTTAAAAAGTTCTATTGTAAGATTTCACAGCATGATATTAACATTATCTTTTGGCATTTTATAGAGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATT-GCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAAGTTAAAGTTCTCCCACATCTCACTCTCAACTCTATGAATGACATTTTCTGACGGTTGATAATTATCCATCTGTACAGCTTTTCTCAAAATTAGGAATGTATGAAGCTGATTTGCTTGGTTTAGACTTGTGAATGTTCCATTCTGGTCTTGGAGCACGCTATACATCCTAAGGATGAGTGATAAATTAGGGATGTTAAATGATTTTAAACATTTTGAGACAATTTTTTATCTCGTAGGCAGTAGGAGGAACTTGAAAAAGATTCGAAGAGAAAAAAGCAAGAATTTCTTCATTTATCTGCAAATGCTCTGCTATGCCATATCTGCTGCATGGTGCTAATATGAACATTTGTCATTTAGAAGTCCAAGCGAAGTATTCGAATTAGAGAGTCAGTTAAACAAAATACCATTGCAAGTAGCATTTTTGACAGTTTATCATATGTCTATCAAATCAAGGAGAAAATATCCCGAATGCTCAAATTTTAGTTACCAAGAAAAGAAAAAAAATCTGGGTACATAAAAAAGAAAAAGCTCCAAATTTTTTAATATATCTTGTTGCTTGGTTTGAAAATGGTGTTGCACTGATGTTTTATATTCCTTCACATGTTCGACTAATTCTAGGCAGTTCTTTTTTCTTTTCATTTAGTTATGTAGTTTGTAATTTCTTTTTCTTAACTAGTCTATTGATTGTTGTACAGAGAGATACTTAGGCTTCTTCCTACTACAAAATAGATGATCAACTGCTGAAAAAATTCTCTTATTTTATCATTCAATTTCAGGTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAGGTACTACGTCGTACATTCACCTGTCAACCTGAACAATGTTGTTTAACTATAACGTAACACGGTAACATTATAGCTACGCAGTTAAGGCTGTATATTAAAATTTGTTGTACCTGCACAGGATGATCAGTCTATTGGGTAGATGTAAGAAAATTTTAGAATGTCCTTGGAACACTGATGATTTCTCTAGGTCAGAGAGAGTTCCATAATTGATTTTGTTCCTGTAAGCTTCCTGATTTATTTTCTTGAACAAGGTTGGCTGCAAAAGATCATGTCACGAATATGATATTATTATTCTACACTGCCAGATGGAACACCTTCAAATTGATGACAAGAGGAGCATGCTTAGTATGTACATCAGTAAATAAAAGGACCAATTTTAACCAAAATGCAAATTGGACCATCATTGCATGTCAACTTTGTTTTTTTAGTCACACATGATGCTATTTGTGTTTTTAATCTTTCACGCAGTGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGA-CAGGTCATACTTCCATCATTCTGCCTCAGTTATAATTCCTATATGAATTCCCTACATCCTTTCTTCTCTATCCAAATAATAAATAGCGTCTTTCAACCTCAGTGATTCTTTATATCTCAATTATCCCTGCAATAGTTATCTAGTTTAATCTGAACGAGTGGCGGCTTTTGCCTAGTAGTTATTTTTTACCTTTTCTTTCTTCAGTCTTC-TTAAAACTGTC</genome_strand>
        <mrna_strand>TACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGGCACGACAAACATTGTCGCCGGCGAGATATCACCGCAATTTTAGCTTAACTTGCGCGTTATTACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGAGTCTTGCTTCAATGGCTAGCTCTACCTAAAG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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......................................................................................................................................................................................................................................TGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGCGCCTCAATTGACTCAATGAAGGCACAAA-TGTTAGTGCCTTAAATGCATTGGACCAG.........................................................................................................................................................................................................TCTTCTTTAAAACCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214846" ref_strand="+" ref_description="SGN-E214846 [cLEC-78-I13]">
      <seq>cggctcctccgctctccgccacgacggacattgtcgacggcgagatatcaccgcaatttttgcttaacttgcgtgttaataccggagacaaggcgggaaagcagacgattggtcaacatagcccttggggtcttgcttcaatggctagctctacctaacggtgattcccttcattctagcaatgctaacctgcgccactgtttaatgcagtgcgccttactaattacatttgtaatcatctgctcatgtctaaagcgacttttggctgccataggttatcatacaaatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattagagaaatccttagagattgatcaacctaaatatggagattgccggaatatattgcgttctggtcctgcatcatctcttcgtgtcaatattcgagcagtagcacaatacgcagctgatggtggcaatggtaaattagctttcagtgatgttgatgagtgtctgagtgcattggaaggacttgactcgttgcttttgcgtgcatcaagaaaggatccaggggcctcaattgactcaatgaaggcacaaattgctactgccttaaatgcattggacagtcttcttaaaactgtcccaactgatgtgcttgnaaagggaaagtctgtagctgattcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41581" stop="62730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41881" g_stop="42166" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42167" i_stop="42334" i_length="168">
            <donor d_prob="0.503" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="326" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="397" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60647" g_stop="60741" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="492" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61522" g_stop="61589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="560" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61590" i_stop="62057" i_length="468">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62058" g_stop="62168" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="671" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62370" g_stop="62430" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="732" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E214846" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41881" e_stop="42166"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="60647" e_stop="60741"/>
          <exon e_start="61522" e_stop="61589"/>
          <exon e_start="62058" e_stop="62168"/>
          <exon e_start="62370" e_stop="62430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTCTAACGAACCAACGCCATAGGTCGTAGGAAGAAAACATTCGGTTTCATACTACAGTGCCCCATAACCAGATCCATATCAGGGGACCATAACATCATGCTGCAATCAGTGTGTCTATTTAGATCGAGTATTTCAATGATCTTTAAAGCAATACAGAGATATACTAGATTTAAAGGAGTAACAATGGATAGACACCCGAAGTTGGCACCACGGTCAGATAGACACTTTAAATGTGCCAGTGATCATTAGACACCTTTTCTTGATAGAAATTTGTATCATGAACATCTATCTGCGAGATCACCCGCTTGAGACTCACTCTTTGCTGATATCAGATGGTCAAATGAAATAATGACATCTGTAATCTATTTTTTTTAATAAAAATAGAATTAGAATAACTTATAAAATACAAATTTTATTTATTTACCTATACCATAAGATGGTAGATTTCCTAGGATCAATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACTTTATCAAAAAAAAAAAAACTATACTATAAGATGGAGTTTACATGCCAAAGCAGGCAGTGGGTCAACATGTCTACTTTGGCATGTAAGGTAGTTAGGTGATTTTAAATAAAATTAAATAACATGATTGGCTTAAAAACAAGTTAGAAACTTAAATGATAATGTCACTAAAACACAGGTGGTTAGAGAATCTTGAAAAAGGTAACGTTTGGCAGCTACTGAGATGCATTTGGCGGAGCTCAAATTCATTTAGGTGATTTCAAAAAAATTCTTGAGTTATTTGTTTGTATTTTTTTTAATTTGTTATATATTTGAAAATTGTGTATTATAAGAGGGAGTTTGCATGCCAAAGCAGGCAGCAGGTCAACATGTCTTCTTTGACATGTAAAGTTAGCTGGGTTATTTTAAATAAGATTTAATAACATGACTGGCTATAAAACAAGGTAGAAACTTAAATTACAATGACACTAAAACACATGTGGTTACATAATATTGAAAGGGGTAACTTTTGGCAGGTACTGAGACGCATTTGGTGGAGCTTAAATCCATTCAGGTGTTCTTAAAAGAATTCTTGACTTATTTGTTTGTATTTTTTTAATTAGCTAAATATTTAAAAATTTTCATAAAAAATATCATTAATCAGAATAATTAGCAACTTATAATATTTAAAAGACAAAAAATCGAATTGACTCTCGAATTCTATTAGTGCCACATAAATTGGAGAAGAGGAAGTAACATGTATTATCTGAAAATTAAGCTAAAAGTACTATCAATCTCAATAATTAATAATTCAAAATATTTAAAAATCATATAACAATTTAGTTGACTCTCCTAATTCCATCCATGCAGTATAAAATTGAGATAAATAGAGTAACACATATTGAGCATGTGTTTGCACGGGCTCTCCAGTAAATATGAGAAAAGCACTCTGTTCCTCTAATTTCTTTCATCAAATGTTTCAGAACTGAACCTCCGATCCCCCCCCCCCCCCCCTTTTTTTTTTTTAAGTTGTATTCTTCAGCATTAAGGTATGCTGGCTACCTCCAAAAAATTACAAGCTAAAACCATAATTACATTGATCCTAGGAAATCTACCAACTGTTCTGCTACTTCTATACCTTCTTCTTTACACCAAAAAATCAACATGTTAATGCGATTTTCTTTAACTTTCTGCATAGTGTTAGTAATATTCTCATGACACCTAAGATCTCTTTCTCTCCAAATAGTCCACCAGACACAAGCTGGTACTATAGACCACCATTTGTTTTATGTCTTGCTCCCCCCCCCCCCCCCCCTCATCCAGCAGCTCAAAAGATCAGCAGTATGTTCTGGCATCACCCAAGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGAACAGTAACCCTACAGTGTAGAAATAAGTGGTTGTTCGTTTCTTCCTTCTCATGACAAAAAAAACATTTGGAGACAATCTGGAAGCCTCTTTTTCTGAGTTTCTCCTGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAACATTTTACCCTGGTTGGAGTGTTGCCCTCCCATATTTGTTTCCATGGACCATGAATTCCCCCAGAGTGAGTCATGACCTCTCTCCTATACAGTCTACGTACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCCGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCGTTTAGATTTCTCCTGAAGGTGAGGTTCCATCCCTGACGGGACCAAATCTCAGAAATTTTAGCCTCAGGATTGGTGCAGAACGAGAAGAGATCAGGGAAAACCGTGTTTAGACAGTCTTGTCCAATCCACTTGTCCCTCCCAAAAAATACTTTGTTGCCCTCTCCCACCTTGACCACCAAATTCTTCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACCCCATATGTGCTATCTACTACATTAGACATCCACTCCTCGGTCTGCCCATACTTGTTGAGAATTGCTCTTCTCCATAATGCCTGATCTTCAACCACAAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCCTCAGATTTTTTATGCCAAGACCCCCTGTCTTCTTGCTTAGTAAGGCTGTCTGCCATTTAACTGAAGTGTATTTTTTCTTCTTCTTTGTTCCCCGACCATAGGAAATCCCGCCTCAATTTATCCAACCTCTCTTCTACCTTTGCTGGTAGAGGGAAAGGAGACATAACATATGTAGGCAACACATCTAGGACCGAATAGATCAGAGTGACTCTTCCTCCCAGAGATAGATAGTTTGTCTTCCAATTAGCCAACCTCTTCTCTGTCTTCTCAATGATTCAATCCCAAATCACCAGCTCCTTATGATTATTCCCCAAAGGCATTCCCAACATCTGAATATTTGCCACTTCCTTGACTTGGAAGATGCTGCTTTTCGCCCAGTTCACAGCCAGTCCGGAGACGGCCTCAAAAATCACCAAAACAACTTTAATGTAACTAACTTGTTCAGCCTTTGCATCGCAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATCTGCAAATTGAGTCCTGACTGATTACTAATGTTGAAACCCTTTATCCAGTCCTTCTGATTGGCCGCTCTAATCATACTGTTAAGACCCTCCATAGCTAAAATAAAAAGGAATAGGGAGAGAGGGTCTCCCTGTCGTAAACCTCTCTCAGAAGGAAAAAAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAATCCTATCCATTTAAGCCATTTGTCTCAAACCCCATCTGCCTCAGTATATTAAGTAGAAACTCCCAATTGACATGATCATATGCCTTTTCTACATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTCGAGTCTACACATTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATGAAGGCCATTTGGTGATTATTCACTAATTTGCTTATCACTTTCTTTAATCTCTCTGCCAACAGCTTGCCAAAAACCTTGTAAACTCCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCAAAGCTCCTGTCTTTTTTGGGATTAGAGCCACATAGGTGACGTTGAGACTCTTCTCTATTTCATGTCTTTCATCAAATTGTGTCACTGCATTCATGAAGTCTGCCTTCAGTATCTCCCAGAAGTTTTGGAAAAAACTCATCGGAAAGCCATCTGGTCCGGGGGCCTTATCACTAGTACATGCTTTTATGCAATTTAAAACTTCCTCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGCTTTCTGCTCCCTGTACTTTAATTTCTGGCCTCCATTGTTCTGTTTCTCTGTAAAGATTTTGATAGTAACTGATTATGGTTCCTATAATTTCTTCTGAATCTGTTACTGTAACCCCTTCAACCATCAGCTTATCTTATCAATGGTGTTGAATCTTTTATGAGCTGTAGCCATCCTGTGAAAATACTTGGTATTTCTGTCTCCGTGTTTGAGCCAGTGTATTCTTTCGATCCCTCTCCCCTTTTTCTTTCTACACCTGTCGTTATCCTCTCCCTCTTTTTCTTTGAACACCCCCCCCCCCCTCTTCCTCTTCTTCTTCCCCACCCTTCCTCCTCTACACCTTCCACCTTTCCCTTCCCCGCTCCTCCTTCAACAAATCTGTCAAAACTGTTGCGGGTCAGAATCTCTCTCAAAATTCTGAAATGTTGTTTTTTTAAAAAAATTGTAGAATTATCAAATGTTCTCAGAGTTAATTGAGCATTCATGTTTTTTCTTAAATTTTGATATCGGAAACATTATGCACTCTTCAAATAAATTATAGATTTTAAGTTGTACTTCATGTGAAATTAGTTGGTTTTTGAGTCATTATGATTGAAGTCCATCCTGTGCACTGCTTCAGTATGTTGTAATGTTAAAGCAATTCACTCTTATTATACAAGATGTTGTCGTATCAGTTCATATTTTTTCAGTTGGTTGTGGTGGTATATGGTGGAGGTGGGCAGAGGGTGGTGGAAAAAGTTGGAGTTAGAATAGGTCACTTCCATAATGTGTTGCCTCTTCTTTTTTTTTTTTGAGAAGGTAACGATTTGTATTATAAACCAATACTTATGTAGTACTGAAAGCCCCTTTACAAAAACGTATGAAATTCTAGGAACAAAAACAGCAAGCCTAGCATGATTCTAATACTTTTCTTTTTTTTGAAATAGATGATTCTAGTACTTCAAGGATTGCTTCTGCATCTACAGGGGAACTCTTTGTACACCAAAAACATAACAAAATACAATCTGTTTTGATCATCTGTAGGGATCTATCCTCAAAGCTTCTAGCATTCCTTTCTCTCCAAATGGTCCACCAGATGCATGCTGGAATTGTCCTCCAATAATTTCTGTTCTTTGCCTCAATTCCTGCATCCTCCCATCTTGAGAGAGTGTCAACAATCGTGCTAGGCATTGGTTATCCAGATTTGTCTCCAGGCCAATTGAGGGTTAGAGGAGTCCTGATCATGACCTTGTAACCTGAGCTCACTTTGAATCTTCCTTTGTTGTGCTCTGTCCACCGTAGGCAGTCCTCCCCTTCCTTCAAACCTTGAAATGATTCCAACCTTTTAAAGAATTCAACTAATCTACAAACTTCCCATTCATTTAAATTCCTTCTGATAGTTAGATCCCAACCTTGGGGAGACCACATTTCAGCCACTGTTCTGTCTTTATGCAGTGCTAAGTCAAAGATGTTGGGGAAGATCTCTGACAAATTTTGATTACCAAGCCATCTATCTTTCCAGAATTGTGTCCTGACACCATTGTGTACTGTTATAGTAGTATGATTCCTTAGGAAAGGCCACCAGTTCCTAATTGATCTCCAAACAGTAACACCATAGGGATTGGTTGCTTCCTTGGTGACCCATGAATCCATCTCTCCGTACTTCACTTTAATCACCTTGTTCCACATTGAGTGTGGTTCATGAGCATATCTCCACAACCATTTCAGCTTTAGAGCCTTCCTTTGGTTCTTCAATTTTTTTATGCCTAATCCTCGTTTTTTTCCTGTGATCATAAATCTCCATTTTACCAGATGGTATCCCTTTCTTTTCTTGTTTCCTTGCCAGAAAAAATCCTTTCTTAGTTTATCCAATCTCTATACTACTCCTACTCCTGCAGGTATTGGAAACAAAGTTAGCATGTACGTAGGAAGGGCATCCAAGACTGCATTTATCAGAGTGAGCCTGCCCCTTTTGATAAATATTGTGCTTTCAATCTGACTAACTTCTTCTCACATCTCTCCAAGACAGAATTTTTTAATTTCTTTGTACTGTGATTTTGCTCCCAATGGCATCCCAGGTAGATAGCAGGTAGTGCTCCCACCTCGCCTTCTAGCACTGAGGCCAAGAGCTCCATATTGGAGACCATGTTTATGGGATATAAATGGATCTTTCCCCATTGATGTGAAGACCTGACATACCTTCAAAAAGCACCAGAATTACCCTAGGGTATCTTAGTTGTTCCTCATCTGCATCACAAAAAATCAAAGTGTCATCTGCATATTTGTGTAACCTCCAAACTCTTCTCATTGTTTGTGGACACTTCAAATCCCGCGATCCACCTATTTGTTTTAGCTGTCTTGATCATGTTATTAAGTCCCTCCATGGCACGAATAAAGAGGAATGAAGATAAAGGATCCCCTTGTCTGATTCCTCTTTGGGCTTCAAAAAGACCTTCGGGAGCACCGTTAATGAGGACAGAAAACTTTACTGTTGAGATGCAAAACCGTATCCATCTAATCCACTTTTCTCCAAATCCCATTTTCCTGAGTATATTGAGAAGGAACCCCCAGTTAACATGATCATAAGCTTTCTCAGTGTCCAGTTTGCATAGGATGCCTGGTTTCTTTTGACCCACTCTAGAGTCTATTGCTTCATTTGCTATTAAGACCGCATCCATGATTTTTCTTCCTTTGATGAAAGCCATCTGTTGGGAGTCTACCAGCTTGTACATCGCCCTTTTGATTCTCTCTGTTAAAACTTTAGACAAGTTGTCATAGAAACTGCCTATCAAGCTTATTGGTCTGAAGTCTTTAAGTTCCTTTGCTCCTTTCTTCTTTGGGGTCAAGGCAATATAGGTAGCATTGAAACTCTTCTCAAACATTTCCTGCTCATAGAAATAATGGAAGGCCGCCATGATGTCATGCTTAAGAATTTCCCAACATTTGATGAAAAAACCCATAGTGTAACTATCAGGTCCTGGGGCTTTATCAATTACACATAACTTCAAGCATTTATAAACTTCCTGCTCCTCAAATTTGGCCTGTAGTTGTGATCTTTCTTCCTCTGATATTGAAGGACAATTCACTAAATTTCCGTCAGGTCTCCATCTTTATGTTTCAGTATACATTTTCTCATAAAACTTGATAATTTCCTCATTACTCTGTTTGGTTCTGTGATGGTCTTTCCCTCTACTTCCAATTGGTCAATATGGTTGCTTCTTTTATGGGAATTTGCAGAATTATGGAAGAATTTTGTATTGTTATCTCCTTCCTTCAACCACAAAATTCTAGAACTTTGTCTCCAAGCACATTCCTCATTTTTTATCAGTTCTTCGTACTCCATAAAGATCTCTGCCTTCAAAGTAGCCTCTTCCTCTGTCAATGCTCTTTTGTTCAGCAAAGAGGGATTTTTTAGCCTTTGAAGCTGTCACAGGGCTGGAAGCTTACCTTGCGAGGAGTCACCTGTTTAGTGTTGATATTGATGGTAATATTGAAGAGTTGGCTGAAATTGTGATGTAACGTTTCTTGTTGTATATTTGGGACTTCCTCTGAGTGTAAAAAACAATGATCAAATGATGGTCAATGAGTTCTAGACATGTGCAAAGAAACTGATCCCCCGGGAAAATAGTATTTATCTTTAAGTGGAAGGCGCACTCTAATCAACATAAGAAAGAGGGGATTGATCAAAAATCTCATCCTTTTCCTTGAAGGCTGATGTGATTTGTTTCCAAGATTCTAAAATGGAGGGGGATATGAAGGAAATAGTAAGAGAGTTATGGGGGGTCAGATGGATCAGTTATACTCAACTGGAGGCAAGTGATATTAGGGGAGGGATTATCCTAAAGTGGGACAACAGAATTTGGGAAGGGGAGATCAGCAGTATAGGCTCTTACTCTGTAACCTGTTATCTACAGTGATTACAGGTAATAATCAGGATTTCTCTTGGTATCTTACTGGAGTATATGCATTAAATGACATAATGGAAAGGGAAGAGGCATGGTGGGAAATTGCATCAGTTAGGGTCTCTGATTTCAGGTCCATGGGTTGTCTCTAGAGATTTCAACACGGTTAGACATCCATCAGAAAAGAAGAATTGCAACAGAATTAAAAAATCAATGACAGACTTCTCCGAATTCATTGAAGACATGGAGTTGATAGACTTCGATTTAACATGTGGTCAATTTTCCTGGAAACAGGGGGATAGACAGGCAACTGCTGCTAGACTAGATAGATTCCTAGTTTCAGAAGGATGGAACACACATTTAGGACTATAAGACAACTTGTTATTCTTAGATTGACCTCAGATCACACAACGCAGATGCTACAATGTGGTGAGTATGAACTCGATAAATCTTATTTCAAGTTTGAGAATTGGTAGCTTTAAACTGAAGATTTTGGTGACATTGGTGACAGAGTGAAGAACCGGTGGGAGTCTTTCCACTGCACAGGAAGGCCCGACTATATCTTGGCTTTCAAACTGAAAGTTATGAAAGGAGAAATTGAAGGAATGGAGTAAAATAGTCAAGGGTAATATGGAATTATAGAAACAGAACATACCAAACCATTTAACATAATTAAAGGAGCCAAGAACAGAGGATTTTGACAGAAGAAGAAATAACCAAGAGGCTAACTTTATCACTGGAATTTGAAGATATCGATAGGCATGAGGAGACTGCTTGGAGGCAAAGATCCTGGGTACTATGGGGCTAAATTAAGGAGATAGAAATACCAATTTTTTCACAGGACAACTAATGCACACAGGAGAATAAATACCATCGGTAAACTAGTAGGAAGAGGAGAAACTTTGACAGACCCAATCAACATCAAGAAAGAAATAATCTCTTTCTTGAGTTCTCTACTCAGAGACAGAGGAATGGATACCACACTCTGCTAGGAGCCTGCAGGAACTGTCCCATGGTCAGTGCAAAAGACAAACTAATGTTGATGGCCCCCTTTGAACCACAACAGATTCTGGACTGCTCTAGGACCAGATGGTTATACTCTGGCTTCTTCCACCAATGTTGGGCAGTGATTAGTTCAGATGTAGTAGCTGTAGTACAAAACTTTTTATAATGTAGGTTTCTTTCAGAAGAGATATAGTGCTATATTTGTAGCTCAACTCCAAAGAAAGTGGGTGCTATTGAATTAACTGATTCCAGCCAATCAACTTGATTGGGAGTGTCTACAAGATCTTTTCCATACTCTCAGCAGAAAGCTTGAAAAAAGTAACCCACAACTTGGTGCCAACAGATGGCCTTCATCAAAGGAAGACAAATCATGGATGCTAGCTACTATGATGGCAATTGAATGTGTTGAAGGAATGCAGAGGAGCAATTTGCCAGATATCTTATGCACACTAGATATCCAAGAAAACTTTTGGCCATCTTAACTGGAACTACCGTCTTGAACTATTACAGAAGATGGGATTTGGATCCAAGTGGATAAGGTGGATCAAACATTAAACCGGCAGAGTCAAATTCTCAGTATTGGTCAACAGAGCCCCCTACTGGTTTTTTCTCTTCCTACATAGGCTTGAGACAAGGAGCTATAGAAGGCATAAGCAATATGATATAGACTGCAAAATTAAATGGATGGGTCAAAGGTTCCCAAGCAATTCCCAGTACAGTGAACGACTTACAAATATCCACCTGCGGTATACTGTTGACACCCTGGTTTTCTGTGAGGCTTCCAAAGAACAAATTCTATTATTGAGAGTGATTGTCATCCTTTCTGAATCCATATATGCTTACACATTATTTGGATAAAGAGCTACATTTATCGTGTCAATGAAATGGCTGATATTCAATCCTTGGCTGATGTTTTAGGAGAGACATGAACACTTCCTACTAAATACTGGGGTATGCCTCTTGGTGCAAAGAGAAAATATGTGAGATATGGAATGAGGTGTAGAAAAATGTGAAAGAAGACTAACCAACTGGAGAAGTCAATATATCTTTATGGGAGGAAGATTGACTTTGAACAACAACATGCTTGATGCTTTACCCACATATATGATGTCTATCTTTCCCTCCCCTATATATGTGATAGAAAAGATAGACGCCTTAAGGAGGAATTTCTTCTGGCTAGACAATGATGACAAGAAAAAATTCATCTTGGGTAACTTTGACAAAAAAACAAGAAGAAAGGGGGAATGGGAGTCAGGAACATGTTGATGCACAATAGACGTCTGATTATGATGTGGTTGTGGAGATTTGATATAGATGACAACCAGCTTTGGAAACAAGTTGCTAAAGCTAAATATGGAAAAGAGGGGTTATGGACAACAAAGGTAGTGACTACTTTCTATGGATGCAACATCTGGAAATCTAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTGAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTATCTTGTGGGCCCAATGATGGTTGACTTTTTTTTCAAACTAGTGTCACGTAAGCTATAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAAAAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGGTTGAGGGGGTACTTGTGCATTTTTCCGGAAATCTATCCGAAACCTTTGGCCGATTTTCCAACAAAGAATAGGCTTCAAAATTGGGAATGGAATGAAAAATTTCCTGTTGGAATGACGTTTGGATTAGAGAAAACACACCCAATCATCTCTTTCCAAAATTATACAGCTTTTGTCAACAAGCATCAATAGCTGACATGTGGACAGACATGGATTAAAGACTTATTGACCCTGGGAATATAAGAAATCAATGTATTTAGGGAACCGAAACTTATCATCTGCCAAACTCAAAAGAAATGAAAAACGGGCAAGTATTGAGTCTCAGATTTAGAAGAATTTTTGAATAATTGAGAGATGGAAAAAATTGCAGATTTCCTCCACATTCTCAGTTAAATGGTTTTTTAGAAGAGGTGGATAGCTTAGTTTGACATTGTCACAGCAAAAGGGAAGTTTTTGTAAAGTCTATATCTCACTAGCTCCAACAATCAAGTGGGTTGTTCACTATGGAAGATGAGCTGGTGGTGAAAATTCCTTACAATGTAAGCTTGTTTCACATGGCTTTTTACTACAAAAAAGGTTCTGACAAATGAAATACTTGAGCAAGAGAGGAATGCAACTATACTCAGATGTTATCTCTTTGTAATGAACAAGTAGATATAGTTAACCACCATTTTTTTTGCACTGTAAATGGACATATCGACTATGGAAACTTTTGATCAACTTGAGGAAAATTTAGTGGGTGATGCCAAGAAGAATAAAGGGAGTGCTAAACTTAAGGAACAGTGATGGCAATGCAACTAGCAGGGAGGAGATATAGAAAGATCGTCTCAGCTTTATTTGGTGGTCAGTTTTGACTAAGAGAAATCAGAGATGTTTTGAGGGAAAACATTGTGACATCCAGAAGATCGTGATAAATTGCCTACCCCTCTATTATTTTTGGTGTAAACAGAAGTTGTTCATACAAACTGAAGATATTTTGTATGTTCACAGTTTATAATAGTTAAGTTTTAACAGATAAGACCCTTATGTAATCAGCCTACTTTTTTGTCGGACTAACAATTTCGTGATGTAGTATTCCTGTTGATATTAATTTTTACTTTTATGAAAAATTTACCAACTCAAAAATATCATTTGAATGATCATGATGCAATACGAAGAGCATATATTCAAAAGTCTTTTCCAATTTCAAAATTACAAGTTTCTTCAATGATGAGCTTTTGAGTAACTATTTGGTATTTATAGAAAAAAGAACATTTTTAATATTTCCAGTGAGTTTATGATGGACACGTCTTAGAAAATGAGAACTCTGAGGAGAGGTGCAACAAACAACAACATACCCAGTGAAACTCCACAAGGTTTAAGGAGGGTAGAATGTATGCAAACCTTACCACTATCTCGTGGAGGTAACGATATTGTTTTCTGAGAGACCCTCGGCTCAAGTGCAACAAATCCCGGTATAAAGGAGACAATGAAGATCGAGGAGAATTTGGCTAATAATGAGGAAATGATGCAAAAGTTTACCAGAGAGATTAATCATGTGATAATCCAAACTCCATAAACAACACACTAGGGTAGACTATTAAGAAAAAAACAAACAATTATAAAAATAAAAATAAAACAAAAGAAGTACAATAATGCAACTAGTACCATTGCAAACACCAGCCACCCTATGCACGACAACATTACACTACCTACTAATTTTCTACCCTAATACGTATCCTCCACACCCTCTTATCTAGGATCATATGGTCGGTAGCTTGAAACTGCATTATATCATGTCTTTCATATCTCCCTAATACTTCTTCGGCCTACCTCTGCCTCTCTTCATTCCTTCTATAAACAACCTCTTGTACCTCCCCATTGGTGCATCTATGCATTTCCTCTTCACATGTCCAAACCATCTGAGTCTCGCTTCTCTCATTTATCTACCACTGAGGCCCATCCCACCTTATTTTGAATATCCTCATTTCTAACTTTATCACTACCTAGTATTATGGGTGGGCGTTCAGTTCTTTGGTTCGGTTTTATCAAATTTCACTTCGGTTTTTCGATTTTCTGTTTTAGAAAAGTGTGCACCATATACCAAACCAAAGTAATTTGGTTCCATTCGGTTTAGTTAGGTGTTTTTAAATTGGTTTTTCGGTTCGAATGAAAAATAAAATGAGGACAAAGTCAAAGTGTAAGATAATTAAAATTTAAAAATATGTTGAGGGATCATGTGTCTCTCATGGAACGCTTGTTGTGCTAACTAAAAGACTAATCATCTTTGTCAAGAACATTGTGCCTTCAACTATTTCTCTAGAAAAACAAGGACGAAGACGGGTTCCTTAACATAACATACATTGATAAAAATATGTTTTGGTTATTCTTGAAAACTAATATTTGAAGTTAACTATTAATTATACATTTGTTTTGTTTTTTTTAATTTGTTCATGAATGATTTAATTGTTAGTTGAATTTTTATTATTAATTTGTATTTTTTTCAATAAAAGTTCGGTTCTTCGGTGCACTGAAGTTCTAAGACCCTTACACCGAACTAAGGAACCGAACTTTTGAAAAAATAACACCGACACCGAATCGAAAATTGAAGAACTGAATTAGTTCGGTTCGATTTTTCAGTTTCCCGGTATTTATGCCCACCTGTACCTAGTATGGCCACACATCCACGGACCAAACATCCATCGCAACATTCTCATCTCTGCAACTTGCATCTCTTGGACATGGGAGTTCTTAAGTAGCCAACATTCAGTTCCATACAAAAATGTTGGTCGAACCACCTTGCTACACTACTTACCTTTGAGTTCCAGTGGTACCCTTTTATCACACAAGACTCTAGAGGCAAGCCTTCACTTCATCCATGTCACACCGATACGATGTGTGATATCATCGTCGATGTCCTTGCTCCCTTGACGTATAGATCCAAGATACTTGAATATATCTCACTTGGGGATATTTTGTGTGTCAAGCCTCACTTCCATGCTTACCTCATGCATCACATCATTGAATTTGCACTCCACATATTCTGTCTTGGTCCAGCTCAACCTCAGCCCTTTAGCCTCCAAAGTATGTCTCCACATCTCTAACTTAACATTAACTCCAAAGGTGTAGTAGTGTGCTTGAATTTATTTTTCTAATATATGGCATTGTTATATTAATTTATTCACTTCTTTAAATGTCGACGGTGCTTATGGAAAATCATGTGTAAGTCACTGGAAGATAACTCTAGGTTCTTACAAGTTGTCACATTTTACTGAGTGCTATATATTTGGAGTGTATTGTTAAGCTTAAAAAGTTCTATTGTAAGATTTCACAGCATGATATTAACATTATCTTTTGGCATTTTATAGAGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAAGTTAAAGTTCTCCCACATCTCACTCTCAACTCTATGAATGACATTTTCTGACGGTTGATAATTATCCATCTGTACAGCTTTTCTCAAAATTAGGAATGTATGAAGCTGATTTGCTTGGTTTAGACTTGTGAATGTTCCATTCTGGTCTTGGAGCACGCTATACATCCTAAGGATGAGTGATAAATTAGGGATGTTAAATGATTTTAAACATTTTGAGACAATTTTTTATCTCGTAGGCAGTAGGAGGAACTTGAAAAAGATTCGAAGAGAAAAAAGCAAGAATTTCTTCATTTATCTGCAAATGCTCTGCTATGCCATATCTGCTGCATGGTGCTAATATGAACATTTGTCATTTAGAAGTCCAAGCGAAGTATTCGAATTAGAGAGTCAGTTAAACAAAATACCATTGCAAGTAGCATTTTTGACAGTTTATCATATGTCTATCAAATCAAGGAGAAAATATCCCGAATGCTCAAATTTTAGTTACCAAGAAAAGAAAAAAAATCTGGGTACATAAAAAAGAAAAAGCTCCAAATTTTTTAATATATCTTGTTGCTTGGTTTGAAAATGGTGTTGCACTGATGTTTTATATTCCTTCACATGTTCGACTAATTCTAGGCAGTTCTTTTTTCTTTTCATTTAGTTATGTAGTTTGTAATTTCTTTTTCTTAACTAGTCTATTGATTGTTGTACAGAGAGATACTTAGGCTTCTTCCTACTACAAAATAGATGATCAACTGCTGAAAAAATTCTCTTATTTTATCATTCAATTTCAGGTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAGGTACTACGTCGTACATTCACCTGTCAACCTGAACAATGTTGTTTAACTATAACGTAACACGGTAACATTATAGCTACGCAGTTAAGGCTGTATATTAAAATTTGTTGTACCTGCACAGGATGATCAGTCTATTGGGTAGATGTAAGAAAATTTTAGAATGTCCTTGGAACACTGATGATTTCTCTAGGTCAGAGAGAGTTCCATAATTGATTTTGTTCCTGTAAGCTTCCTGATTTATTTTCTTGAACAAGGTTGGCTGCAAAAGATCATGTCACGAATATGATATTATTATTCTACACTGCCAGATGGAACACCTTCAAATTGATGACAAGAGGAGCATGCTTAGTATGTACATCAGTAAATAAAAGGACCAATTTTAACCAAAATGCAAATTGGACCATCATTGCATGTCAACTTTGTTTTTTTAGTCACACATGATGCTATTTGTGTTTTTAATCTTTCACGCAGTGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAGGTCATACTTCCATCATTCTGCCTCAGTTATAATTCCTATATGAATTCCCTACATCCTTTCTTCTCTATCCAAATAATAAATAGCGTCTTTCAACCTCAGTGATTCTTTATATCTCAATTATCCCTGCAATAGTTATCTAGTTTAATCTGAACGAGTGGCGGCTTTTGCCTAGTAGTTATTTTTTACCTTTTCTTTCTTCAGTCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATAT</genome_strand>
        <mrna_strand>CGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAA........................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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..............................................................................................................................................................................................TGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAG.........................................................................................................................................................................................................TCTTCTTAAAACTGTCCCAACTGATGTGCTTGNAAAGGGAAAGTCTGTAGCTGATTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293168" ref_strand="+" ref_description="SGN-E293168 [cLET-12-F18]">
      <seq>cgctctccgccacgacggacattgtcgacggcgagatatcaccgcaatttttgcttaacttgcgtgttaataccggagacaaggcgggaaagcagacgattggtcaacatagcccttggggtcttgcttcaatggctagctctacctaacgatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattagagaaatccttagagattgatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41590" stop="60970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41890" g_stop="42040" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="191" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="262" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46464" i_stop="46747" i_length="284">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.147" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46748" g_stop="46771" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="286" r_length="24" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E293168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41890" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="46748" e_stop="46771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACT</genome_strand>
        <mrna_strand>CGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG............................................................................................................................................................................................................................................................................................AGAAATCCTTAGAGATTGATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477671" ref_strand="+" ref_description="SGN-E477671 [cSTD-1-K2]">
      <seq>ggcgagatatcaccgcaattttagcttaacttgcgcgttattaccggagacaaggcgggaaagcagacgattggtcaacatagcccttggagtcttgcttcaatggctagctctacctaaagatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattagagaaatctttggaggttgatcaacctaaatatggagattgccggaatatattgcgttctggtcctgcatcatctcttcgtgtcaatattcgagcagcagcacaatacgcagctgatggtggcaatggtaaatcagctttcagtgatgttgatcagtgtctgagatggaacaccttcaaattgatgacgagaggagcatgcttttagtataaacatcagtaaacaaaagggaccaattttaaccaaaatgcaaattggaccatcattgcatgtcaactttgtatttttactcacacgntgatgttatttgtgtttttattctttcatgcagtgcattggaaggacttgactcgttgcttttgcgtgcatcagaannagatccaggggcctcaattgactcaatgaagggccaaatngttagtgccttaaatgcattggacagtcttctaaaaccgtcccagctgatgtgcttgaaagggaaagtctgtagctgattcatattttttgctggggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41619" stop="62745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41919" g_stop="42040" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="162" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="233" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60647" g_stop="60741" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="328" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61522" g_stop="61589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="396" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61590" i_stop="61894" i_length="305">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.763" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61895" g_stop="62168" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="674" r_length="278" r_score="0.898"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201">
            <donor d_prob="0.976" d_score="0.90"/>
            <acceptor a_prob="0.673" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62370" g_stop="62445" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="747" r_length="73" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E477671" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41919" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="60647" e_stop="60741"/>
          <exon e_start="61522" e_stop="61589"/>
          <exon e_start="61895" e_stop="62168"/>
          <exon e_start="62370" e_stop="62445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTCTAACGAACCAACGCCATAGGTCGTAGGAAGAAAACATTCGGTTTCATACTACAGTGCCCCATAACCAGATCCATATCAGGGGACCATAACATCATGCTGCAATCAGTGTGTCTATTTAGATCGAGTATTTCAATGATCTTTAAAGCAATACAGAGATATACTAGATTTAAAGGAGTAACAATGGATAGACACCCGAAGTTGGCACCACGGTCAGATAGACACTTTAAATGTGCCAGTGATCATTAGACACCTTTTCTTGATAGAAATTTGTATCATGAACATCTATCTGCGAGATCACCCGCTTGAGACTCACTCTTTGCTGATATCAGATGGTCAAATGAAATAATGACATCTGTAATCTATTTTTTTTAATAAAAATAGAATTAGAATAACTTATAAAATACAAATTTTATTTATTTACCTATACCATAAGATGGTAGATTTCCTAGGATCAATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACTTTATCAAAAAAAAAAAAACTATACTATAAGATGGAGTTTACATGCCAAAGCAGGCAGTGGGTCAACATGTCTACTTTGGCATGTAAGGTAGTTAGGTGATTTTAAATAAAATTAAATAACATGATTGGCTTAAAAACAAGTTAGAAACTTAAATGATAATGTCACTAAAACACAGGTGGTTAGAGAATCTTGAAAAAGGTAACGTTTGGCAGCTACTGAGATGCATTTGGCGGAGCTCAAATTCATTTAGGTGATTTCAAAAAAATTCTTGAGTTATTTGTTTGTATTTTTTTTAATTTGTTATATATTTGAAAATTGTGTATTATAAGAGGGAGTTTGCATGCCAAAGCAGGCAGCAGGTCAACATGTCTTCTTTGACATGTAAAGTTAGCTGGGTTATTTTAAATAAGATTTAATAACATGACTGGCTATAAAACAAGGTAGAAACTTAAATTACAATGACACTAAAACACATGTGGTTACATAATATTGAAAGGGGTAACTTTTGGCAGGTACTGAGACGCATTTGGTGGAGCTTAAATCCATTCAGGTGTTCTTAAAAGAATTCTTGACTTATTTGTTTGTATTTTTTTAATTAGCTAAATATTTAAAAATTTTCATAAAAAATATCATTAATCAGAATAATTAGCAACTTATAATATTTAAAAGACAAAAAATCGAATTGACTCTCGAATTCTATTAGTGCCACATAAATTGGAGAAGAGGAAGTAACATGTATTATCTGAAAATTAAGCTAAAAGTACTATCAATCTCAATAATTAATAATTCAAAATATTTAAAAATCATATAACAATTTAGTTGACTCTCCTAATTCCATCCATGCAGTATAAAATTGAGATAAATAGAGTAACACATATTGAGCATGTGTTTGCACGGGCTCTCCAGTAAATATGAGAAAAGCACTCTGTTCCTCTAATTTCTTTCATCAAATGTTTCAGAACTGAACCTCCGATCCCCCCCCCCCCCCCCTTTTTTTTTTTTAAGTTGTATTCTTCAGCATTAAGGTATGCTGGCTACCTCCAAAAAATTACAAGCTAAAACCATAATTACATTGATCCTAGGAAATCTACCAACTGTTCTGCTACTTCTATACCTTCTTCTTTACACCAAAAAATCAACATGTTAATGCGATTTTCTTTAACTTTCTGCATAGTGTTAGTAATATTCTCATGACACCTAAGATCTCTTTCTCTCCAAATAGTCCACCAGACACAAGCTGGTACTATAGACCACCATTTGTTTTATGTCTTGCTCCCCCCCCCCCCCCCCCTCATCCAGCAGCTCAAAAGATCAGCAGTATGTTCTGGCATCACCCAAGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGAACAGTAACCCTACAGTGTAGAAATAAGTGGTTGTTCGTTTCTTCCTTCTCATGACAAAAAAAACATTTGGAGACAATCTGGAAGCCTCTTTTTCTGAGTTTCTCCTGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAACATTTTACCCTGGTTGGAGTGTTGCCCTCCCATATTTGTTTCCATGGACCATGAATTCCCCCAGAGTGAGTCATGACCTCTCTCCTATACAGTCTACGTACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCCGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCGTTTAGATTTCTCCTGAAGGTGAGGTTCCATCCCTGACGGGACCAAATCTCAGAAATTTTAGCCTCAGGATTGGTGCAGAACGAGAAGAGATCAGGGAAAACCGTGTTTAGACAGTCTTGTCCAATCCACTTGTCCCTCCCAAAAAATACTTTGTTGCCCTCTCCCACCTTGACCACCAAATTCTTCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACCCCATATGTGCTATCTACTACATTAGACATCCACTCCTCGGTCTGCCCATACTTGTTGAGAATTGCTCTTCTCCATAATGCCTGATCTTCAACCACAAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCCTCAGATTTTTTATGCCAAGACCCCCTGTCTTCTTGCTTAGTAAGGCTGTCTGCCATTTAACTGAAGTGTATTTTTTCTTCTTCTTTGTTCCCCGACCATAGGAAATCCCGCCTCAATTTATCCAACCTCTCTTCTACCTTTGCTGGTAGAGGGAAAGGAGACATAACATATGTAGGCAACACATCTAGGACCGAATAGATCAGAGTGACTCTTCCTCCCAGAGATAGATAGTTTGTCTTCCAATTAGCCAACCTCTTCTCTGTCTTCTCAATGATTCAATCCCAAATCACCAGCTCCTTATGATTATTCCCCAAAGGCATTCCCAACATCTGAATATTTGCCACTTCCTTGACTTGGAAGATGCTGCTTTTCGCCCAGTTCACAGCCAGTCCGGAGACGGCCTCAAAAATCACCAAAACAACTTTAATGTAACTAACTTGTTCAGCCTTTGCATCGCAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATCTGCAAATTGAGTCCTGACTGATTACTAATGTTGAAACCCTTTATCCAGTCCTTCTGATTGGCCGCTCTAATCATACTGTTAAGACCCTCCATAGCTAAAATAAAAAGGAATAGGGAGAGAGGGTCTCCCTGTCGTAAACCTCTCTCAGAAGGAAAAAAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAATCCTATCCATTTAAGCCATTTGTCTCAAACCCCATCTGCCTCAGTATATTAAGTAGAAACTCCCAATTGACATGATCATATGCCTTTTCTACATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTCGAGTCTACACATTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATGAAGGCCATTTGGTGATTATTCACTAATTTGCTTATCACTTTCTTTAATCTCTCTGCCAACAGCTTGCCAAAAACCTTGTAAACTCCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCAAAGCTCCTGTCTTTTTTGGGATTAGAGCCACATAGGTGACGTTGAGACTCTTCTCTATTTCATGTCTTTCATCAAATTGTGTCACTGCATTCATGAAGTCTGCCTTCAGTATCTCCCAGAAGTTTTGGAAAAAACTCATCGGAAAGCCATCTGGTCCGGGGGCCTTATCACTAGTACATGCTTTTATGCAATTTAAAACTTCCTCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGCTTTCTGCTCCCTGTACTTTAATTTCTGGCCTCCATTGTTCTGTTTCTCTGTAAAGATTTTGATAGTAACTGATTATGGTTCCTATAATTTCTTCTGAATCTGTTACTGTAACCCCTTCAACCATCAGCTTATCTTATCAATGGTGTTGAATCTTTTATGAGCTGTAGCCATCCTGTGAAAATACTTGGTATTTCTGTCTCCGTGTTTGAGCCAGTGTATTCTTTCGATCCCTCTCCCCTTTTTCTTTCTACACCTGTCGTTATCCTCTCCCTCTTTTTCTTTGAACACCCCCCCCCCCCTCTTCCTCTTCTTCTTCCCCACCCTTCCTCCTCTACACCTTCCACCTTTCCCTTCCCCGCTCCTCCTTCAACAAATCTGTCAAAACTGTTGCGGGTCAGAATCTCTCTCAAAATTCTGAAATGTTGTTTTTTTAAAAAAATTGTAGAATTATCAAATGTTCTCAGAGTTAATTGAGCATTCATGTTTTTTCTTAAATTTTGATATCGGAAACATTATGCACTCTTCAAATAAATTATAGATTTTAAGTTGTACTTCATGTGAAATTAGTTGGTTTTTGAGTCATTATGATTGAAGTCCATCCTGTGCACTGCTTCAGTATGTTGTAATGTTAAAGCAATTCACTCTTATTATACAAGATGTTGTCGTATCAGTTCATATTTTTTCAGTTGGTTGTGGTGGTATATGGTGGAGGTGGGCAGAGGGTGGTGGAAAAAGTTGGAGTTAGAATAGGTCACTTCCATAATGTGTTGCCTCTTCTTTTTTTTTTTTGAGAAGGTAACGATTTGTATTATAAACCAATACTTATGTAGTACTGAAAGCCCCTTTACAAAAACGTATGAAATTCTAGGAACAAAAACAGCAAGCCTAGCATGATTCTAATACTTTTCTTTTTTTTGAAATAGATGATTCTAGTACTTCAAGGATTGCTTCTGCATCTACAGGGGAACTCTTTGTACACCAAAAACATAACAAAATACAATCTGTTTTGATCATCTGTAGGGATCTATCCTCAAAGCTTCTAGCATTCCTTTCTCTCCAAATGGTCCACCAGATGCATGCTGGAATTGTCCTCCAATAATTTCTGTTCTTTGCCTCAATTCCTGCATCCTCCCATCTTGAGAGAGTGTCAACAATCGTGCTAGGCATTGGTTATCCAGATTTGTCTCCAGGCCAATTGAGGGTTAGAGGAGTCCTGATCATGACCTTGTAACCTGAGCTCACTTTGAATCTTCCTTTGTTGTGCTCTGTCCACCGTAGGCAGTCCTCCCCTTCCTTCAAACCTTGAAATGATTCCAACCTTTTAAAGAATTCAACTAATCTACAAACTTCCCATTCATTTAAATTCCTTCTGATAGTTAGATCCCAACCTTGGGGAGACCACATTTCAGCCACTGTTCTGTCTTTATGCAGTGCTAAGTCAAAGATGTTGGGGAAGATCTCTGACAAATTTTGATTACCAAGCCATCTATCTTTCCAGAATTGTGTCCTGACACCATTGTGTACTGTTATAGTAGTATGATTCCTTAGGAAAGGCCACCAGTTCCTAATTGATCTCCAAACAGTAACACCATAGGGATTGGTTGCTTCCTTGGTGACCCATGAATCCATCTCTCCGTACTTCACTTTAATCACCTTGTTCCACATTGAGTGTGGTTCATGAGCATATCTCCACAACCATTTCAGCTTTAGAGCCTTCCTTTGGTTCTTCAATTTTTTTATGCCTAATCCTCGTTTTTTTCCTGTGATCATAAATCTCCATTTTACCAGATGGTATCCCTTTCTTTTCTTGTTTCCTTGCCAGAAAAAATCCTTTCTTAGTTTATCCAATCTCTATACTACTCCTACTCCTGCAGGTATTGGAAACAAAGTTAGCATGTACGTAGGAAGGGCATCCAAGACTGCATTTATCAGAGTGAGCCTGCCCCTTTTGATAAATATTGTGCTTTCAATCTGACTAACTTCTTCTCACATCTCTCCAAGACAGAATTTTTTAATTTCTTTGTACTGTGATTTTGCTCCCAATGGCATCCCAGGTAGATAGCAGGTAGTGCTCCCACCTCGCCTTCTAGCACTGAGGCCAAGAGCTCCATATTGGAGACCATGTTTATGGGATATAAATGGATCTTTCCCCATTGATGTGAAGACCTGACATACCTTCAAAAAGCACCAGAATTACCCTAGGGTATCTTAGTTGTTCCTCATCTGCATCACAAAAAATCAAAGTGTCATCTGCATATTTGTGTAACCTCCAAACTCTTCTCATTGTTTGTGGACACTTCAAATCCCGCGATCCACCTATTTGTTTTAGCTGTCTTGATCATGTTATTAAGTCCCTCCATGGCACGAATAAAGAGGAATGAAGATAAAGGATCCCCTTGTCTGATTCCTCTTTGGGCTTCAAAAAGACCTTCGGGAGCACCGTTAATGAGGACAGAAAACTTTACTGTTGAGATGCAAAACCGTATCCATCTAATCCACTTTTCTCCAAATCCCATTTTCCTGAGTATATTGAGAAGGAACCCCCAGTTAACATGATCATAAGCTTTCTCAGTGTCCAGTTTGCATAGGATGCCTGGTTTCTTTTGACCCACTCTAGAGTCTATTGCTTCATTTGCTATTAAGACCGCATCCATGATTTTTCTTCCTTTGATGAAAGCCATCTGTTGGGAGTCTACCAGCTTGTACATCGCCCTTTTGATTCTCTCTGTTAAAACTTTAGACAAGTTGTCATAGAAACTGCCTATCAAGCTTATTGGTCTGAAGTCTTTAAGTTCCTTTGCTCCTTTCTTCTTTGGGGTCAAGGCAATATAGGTAGCATTGAAACTCTTCTCAAACATTTCCTGCTCATAGAAATAATGGAAGGCCGCCATGATGTCATGCTTAAGAATTTCCCAACATTTGATGAAAAAACCCATAGTGTAACTATCAGGTCCTGGGGCTTTATCAATTACACATAACTTCAAGCATTTATAAACTTCCTGCTCCTCAAATTTGGCCTGTAGTTGTGATCTTTCTTCCTCTGATATTGAAGGACAATTCACTAAATTTCCGTCAGGTCTCCATCTTTATGTTTCAGTATACATTTTCTCATAAAACTTGATAATTTCCTCATTACTCTGTTTGGTTCTGTGATGGTCTTTCCCTCTACTTCCAATTGGTCAATATGGTTGCTTCTTTTATGGGAATTTGCAGAATTATGGAAGAATTTTGTATTGTTATCTCCTTCCTTCAACCACAAAATTCTAGAACTTTGTCTCCAAGCACATTCCTCATTTTTTATCAGTTCTTCGTACTCCATAAAGATCTCTGCCTTCAAAGTAGCCTCTTCCTCTGTCAATGCTCTTTTGTTCAGCAAAGAGGGATTTTTTAGCCTTTGAAGCTGTCACAGGGCTGGAAGCTTACCTTGCGAGGAGTCACCTGTTTAGTGTTGATATTGATGGTAATATTGAAGAGTTGGCTGAAATTGTGATGTAACGTTTCTTGTTGTATATTTGGGACTTCCTCTGAGTGTAAAAAACAATGATCAAATGATGGTCAATGAGTTCTAGACATGTGCAAAGAAACTGATCCCCCGGGAAAATAGTATTTATCTTTAAGTGGAAGGCGCACTCTAATCAACATAAGAAAGAGGGGATTGATCAAAAATCTCATCCTTTTCCTTGAAGGCTGATGTGATTTGTTTCCAAGATTCTAAAATGGAGGGGGATATGAAGGAAATAGTAAGAGAGTTATGGGGGGTCAGATGGATCAGTTATACTCAACTGGAGGCAAGTGATATTAGGGGAGGGATTATCCTAAAGTGGGACAACAGAATTTGGGAAGGGGAGATCAGCAGTATAGGCTCTTACTCTGTAACCTGTTATCTACAGTGATTACAGGTAATAATCAGGATTTCTCTTGGTATCTTACTGGAGTATATGCATTAAATGACATAATGGAAAGGGAAGAGGCATGGTGGGAAATTGCATCAGTTAGGGTCTCTGATTTCAGGTCCATGGGTTGTCTCTAGAGATTTCAACACGGTTAGACATCCATCAGAAAAGAAGAATTGCAACAGAATTAAAAAATCAATGACAGACTTCTCCGAATTCATTGAAGACATGGAGTTGATAGACTTCGATTTAACATGTGGTCAATTTTCCTGGAAACAGGGGGATAGACAGGCAACTGCTGCTAGACTAGATAGATTCCTAGTTTCAGAAGGATGGAACACACATTTAGGACTATAAGACAACTTGTTATTCTTAGATTGACCTCAGATCACACAACGCAGATGCTACAATGTGGTGAGTATGAACTCGATAAATCTTATTTCAAGTTTGAGAATTGGTAGCTTTAAACTGAAGATTTTGGTGACATTGGTGACAGAGTGAAGAACCGGTGGGAGTCTTTCCACTGCACAGGAAGGCCCGACTATATCTTGGCTTTCAAACTGAAAGTTATGAAAGGAGAAATTGAAGGAATGGAGTAAAATAGTCAAGGGTAATATGGAATTATAGAAACAGAACATACCAAACCATTTAACATAATTAAAGGAGCCAAGAACAGAGGATTTTGACAGAAGAAGAAATAACCAAGAGGCTAACTTTATCACTGGAATTTGAAGATATCGATAGGCATGAGGAGACTGCTTGGAGGCAAAGATCCTGGGTACTATGGGGCTAAATTAAGGAGATAGAAATACCAATTTTTTCACAGGACAACTAATGCACACAGGAGAATAAATACCATCGGTAAACTAGTAGGAAGAGGAGAAACTTTGACAGACCCAATCAACATCAAGAAAGAAATAATCTCTTTCTTGAGTTCTCTACTCAGAGACAGAGGAATGGATACCACACTCTGCTAGGAGCCTGCAGGAACTGTCCCATGGTCAGTGCAAAAGACAAACTAATGTTGATGGCCCCCTTTGAACCACAACAGATTCTGGACTGCTCTAGGACCAGATGGTTATACTCTGGCTTCTTCCACCAATGTTGGGCAGTGATTAGTTCAGATGTAGTAGCTGTAGTACAAAACTTTTTATAATGTAGGTTTCTTTCAGAAGAGATATAGTGCTATATTTGTAGCTCAACTCCAAAGAAAGTGGGTGCTATTGAATTAACTGATTCCAGCCAATCAACTTGATTGGGAGTGTCTACAAGATCTTTTCCATACTCTCAGCAGAAAGCTTGAAAAAAGTAACCCACAACTTGGTGCCAACAGATGGCCTTCATCAAAGGAAGACAAATCATGGATGCTAGCTACTATGATGGCAATTGAATGTGTTGAAGGAATGCAGAGGAGCAATTTGCCAGATATCTTATGCACACTAGATATCCAAGAAAACTTTTGGCCATCTTAACTGGAACTACCGTCTTGAACTATTACAGAAGATGGGATTTGGATCCAAGTGGATAAGGTGGATCAAACATTAAACCGGCAGAGTCAAATTCTCAGTATTGGTCAACAGAGCCCCCTACTGGTTTTTTCTCTTCCTACATAGGCTTGAGACAAGGAGCTATAGAAGGCATAAGCAATATGATATAGACTGCAAAATTAAATGGATGGGTCAAAGGTTCCCAAGCAATTCCCAGTACAGTGAACGACTTACAAATATCCACCTGCGGTATACTGTTGACACCCTGGTTTTCTGTGAGGCTTCCAAAGAACAAATTCTATTATTGAGAGTGATTGTCATCCTTTCTGAATCCATATATGCTTACACATTATTTGGATAAAGAGCTACATTTATCGTGTCAATGAAATGGCTGATATTCAATCCTTGGCTGATGTTTTAGGAGAGACATGAACACTTCCTACTAAATACTGGGGTATGCCTCTTGGTGCAAAGAGAAAATATGTGAGATATGGAATGAGGTGTAGAAAAATGTGAAAGAAGACTAACCAACTGGAGAAGTCAATATATCTTTATGGGAGGAAGATTGACTTTGAACAACAACATGCTTGATGCTTTACCCACATATATGATGTCTATCTTTCCCTCCCCTATATATGTGATAGAAAAGATAGACGCCTTAAGGAGGAATTTCTTCTGGCTAGACAATGATGACAAGAAAAAATTCATCTTGGGTAACTTTGACAAAAAAACAAGAAGAAAGGGGGAATGGGAGTCAGGAACATGTTGATGCACAATAGACGTCTGATTATGATGTGGTTGTGGAGATTTGATATAGATGACAACCAGCTTTGGAAACAAGTTGCTAAAGCTAAATATGGAAAAGAGGGGTTATGGACAACAAAGGTAGTGACTACTTTCTATGGATGCAACATCTGGAAATCTAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTGAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTATCTTGTGGGCCCAATGATGGTTGACTTTTTTTTCAAACTAGTGTCACGTAAGCTATAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAAAAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGGTTGAGGGGGTACTTGTGCATTTTTCCGGAAATCTATCCGAAACCTTTGGCCGATTTTCCAACAAAGAATAGGCTTCAAAATTGGGAATGGAATGAAAAATTTCCTGTTGGAATGACGTTTGGATTAGAGAAAACACACCCAATCATCTCTTTCCAAAATTATACAGCTTTTGTCAACAAGCATCAATAGCTGACATGTGGACAGACATGGATTAAAGACTTATTGACCCTGGGAATATAAGAAATCAATGTATTTAGGGAACCGAAACTTATCATCTGCCAAACTCAAAAGAAATGAAAAACGGGCAAGTATTGAGTCTCAGATTTAGAAGAATTTTTGAATAATTGAGAGATGGAAAAAATTGCAGATTTCCTCCACATTCTCAGTTAAATGGTTTTTTAGAAGAGGTGGATAGCTTAGTTTGACATTGTCACAGCAAAAGGGAAGTTTTTGTAAAGTCTATATCTCACTAGCTCCAACAATCAAGTGGGTTGTTCACTATGGAAGATGAGCTGGTGGTGAAAATTCCTTACAATGTAAGCTTGTTTCACATGGCTTTTTACTACAAAAAAGGTTCTGACAAATGAAATACTTGAGCAAGAGAGGAATGCAACTATACTCAGATGTTATCTCTTTGTAATGAACAAGTAGATATAGTTAACCACCATTTTTTTTGCACTGTAAATGGACATATCGACTATGGAAACTTTTGATCAACTTGAGGAAAATTTAGTGGGTGATGCCAAGAAGAATAAAGGGAGTGCTAAACTTAAGGAACAGTGATGGCAATGCAACTAGCAGGGAGGAGATATAGAAAGATCGTCTCAGCTTTATTTGGTGGTCAGTTTTGACTAAGAGAAATCAGAGATGTTTTGAGGGAAAACATTGTGACATCCAGAAGATCGTGATAAATTGCCTACCCCTCTATTATTTTTGGTGTAAACAGAAGTTGTTCATACAAACTGAAGATATTTTGTATGTTCACAGTTTATAATAGTTAAGTTTTAACAGATAAGACCCTTATGTAATCAGCCTACTTTTTTGTCGGACTAACAATTTCGTGATGTAGTATTCCTGTTGATATTAATTTTTACTTTTATGAAAAATTTACCAACTCAAAAATATCATTTGAATGATCATGATGCAATACGAAGAGCATATATTCAAAAGTCTTTTCCAATTTCAAAATTACAAGTTTCTTCAATGATGAGCTTTTGAGTAACTATTTGGTATTTATAGAAAAAAGAACATTTTTAATATTTCCAGTGAGTTTATGATGGACACGTCTTAGAAAATGAGAACTCTGAGGAGAGGTGCAACAAACAACAACATACCCAGTGAAACTCCACAAGGTTTAAGGAGGGTAGAATGTATGCAAACCTTACCACTATCTCGTGGAGGTAACGATATTGTTTTCTGAGAGACCCTCGGCTCAAGTGCAACAAATCCCGGTATAAAGGAGACAATGAAGATCGAGGAGAATTTGGCTAATAATGAGGAAATGATGCAAAAGTTTACCAGAGAGATTAATCATGTGATAATCCAAACTCCATAAACAACACACTAGGGTAGACTATTAAGAAAAAAACAAACAATTATAAAAATAAAAATAAAACAAAAGAAGTACAATAATGCAACTAGTACCATTGCAAACACCAGCCACCCTATGCACGACAACATTACACTACCTACTAATTTTCTACCCTAATACGTATCCTCCACACCCTCTTATCTAGGATCATATGGTCGGTAGCTTGAAACTGCATTATATCATGTCTTTCATATCTCCCTAATACTTCTTCGGCCTACCTCTGCCTCTCTTCATTCCTTCTATAAACAACCTCTTGTACCTCCCCATTGGTGCATCTATGCATTTCCTCTTCACATGTCCAAACCATCTGAGTCTCGCTTCTCTCATTTATCTACCACTGAGGCCCATCCCACCTTATTTTGAATATCCTCATTTCTAACTTTATCACTACCTAGTATTATGGGTGGGCGTTCAGTTCTTTGGTTCGGTTTTATCAAATTTCACTTCGGTTTTTCGATTTTCTGTTTTAGAAAAGTGTGCACCATATACCAAACCAAAGTAATTTGGTTCCATTCGGTTTAGTTAGGTGTTTTTAAATTGGTTTTTCGGTTCGAATGAAAAATAAAATGAGGACAAAGTCAAAGTGTAAGATAATTAAAATTTAAAAATATGTTGAGGGATCATGTGTCTCTCATGGAACGCTTGTTGTGCTAACTAAAAGACTAATCATCTTTGTCAAGAACATTGTGCCTTCAACTATTTCTCTAGAAAAACAAGGACGAAGACGGGTTCCTTAACATAACATACATTGATAAAAATATGTTTTGGTTATTCTTGAAAACTAATATTTGAAGTTAACTATTAATTATACATTTGTTTTGTTTTTTTTAATTTGTTCATGAATGATTTAATTGTTAGTTGAATTTTTATTATTAATTTGTATTTTTTTCAATAAAAGTTCGGTTCTTCGGTGCACTGAAGTTCTAAGACCCTTACACCGAACTAAGGAACCGAACTTTTGAAAAAATAACACCGACACCGAATCGAAAATTGAAGAACTGAATTAGTTCGGTTCGATTTTTCAGTTTCCCGGTATTTATGCCCACCTGTACCTAGTATGGCCACACATCCACGGACCAAACATCCATCGCAACATTCTCATCTCTGCAACTTGCATCTCTTGGACATGGGAGTTCTTAAGTAGCCAACATTCAGTTCCATACAAAAATGTTGGTCGAACCACCTTGCTACACTACTTACCTTTGAGTTCCAGTGGTACCCTTTTATCACACAAGACTCTAGAGGCAAGCCTTCACTTCATCCATGTCACACCGATACGATGTGTGATATCATCGTCGATGTCCTTGCTCCCTTGACGTATAGATCCAAGATACTTGAATATATCTCACTTGGGGATATTTTGTGTGTCAAGCCTCACTTCCATGCTTACCTCATGCATCACATCATTGAATTTGCACTCCACATATTCTGTCTTGGTCCAGCTCAACCTCAGCCCTTTAGCCTCCAAAGTATGTCTCCACATCTCTAACTTAACATTAACTCCAAAGGTGTAGTAGTGTGCTTGAATTTATTTTTCTAATATATGGCATTGTTATATTAATTTATTCACTTCTTTAAATGTCGACGGTGCTTATGGAAAATCATGTGTAAGTCACTGGAAGATAACTCTAGGTTCTTACAAGTTGTCACATTTTACTGAGTGCTATATATTTGGAGTGTATTGTTAAGCTTAAAAAGTTCTATTGTAAGATTTCACAGCATGATATTAACATTATCTTTTGGCATTTTATAGAGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAAGTTAAAGTTCTCCCACATCTCACTCTCAACTCTATGAATGACATTTTCTGACGGTTGATAATTATCCATCTGTACAGCTTTTCTCAAAATTAGGAATGTATGAAGCTGATTTGCTTGGTTTAGACTTGTGAATGTTCCATTCTGGTCTTGGAGCACGCTATACATCCTAAGGATGAGTGATAAATTAGGGATGTTAAATGATTTTAAACATTTTGAGACAATTTTTTATCTCGTAGGCAGTAGGAGGAACTTGAAAAAGATTCGAAGAGAAAAAAGCAAGAATTTCTTCATTTATCTGCAAATGCTCTGCTATGCCATATCTGCTGCATGGTGCTAATATGAACATTTGTCATTTAGAAGTCCAAGCGAAGTATTCGAATTAGAGAGTCAGTTAAACAAAATACCATTGCAAGTAGCATTTTTGACAGTTTATCATATGTCTATCAAATCAAGGAGAAAATATCCCGAATGCTCAAATTTTAGTTACCAAGAAAAGAAAAAAAATCTGGGTACATAAAAAAGAAAAAGCTCCAAATTTTTTAATATATCTTGTTGCTTGGTTTGAAAATGGTGTTGCACTGATGTTTTATATTCCTTCACATGTTCGACTAATTCTAGGCAGTTCTTTTTTCTTTTCATTTAGTTATGTAGTTTGTAATTTCTTTTTCTTAACTAGTCTATTGATTGTTGTACAGAGAGATACTTAGGCTTCTTCCTACTACAAAATAGATGATCAACTGCTGAAAAAATTCTCTTATTTTATCATTCAATTTCAGGTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAGGTACTACGTCGTACATTCACCTGTCAACCTGAACAATGTTGTTTAACTATAACGTAACACGGTAACATTATAGCTACGCAGTTAAGGCTGTATATTAAAATTTGTTGTACCTGCACAGGATGATCAGTCTATTGGGTAGATGTAAGAAAATTTTAGAATGTCCTTGGAACACTGATGATTTCTCTAGGTCAGAGAGAGTTCCATAATTGATTTTGTTCCTGTAAGCTTCCTGATTTATTTTCTTGAACAAGGTTGGCTGCAAAAGATCATGTCACGAATATGATATTATTATTCTACACTGCCAGATGGAACACCTTCAAATTGATGACAAGAGGAGCATGC--TTAGTATGTACATCAGTAAATAAAA-GGACCAATTTTAACCAAAATGCAAATTGGACCATCATTGCATGTCAACTTTGTTTTTTTAGTCACAC-ATGATGCTATTTGTGTTTTTAATCTTTCACGCAGTGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAGGTCATACTTCCATCATTCTGCCTCAGTTATAATTCCTATATGAATTCCCTACATCCTTTCTTCTCTATCCAAATAATAAATAGCGTCTTTCAACCTCAGTGATTCTTTATATCTCAATTATCCCTGCAATAGTTATCTAGTTTAATCTGAACGAGTGGCGGCTTTTGCCTAGTAGTTATTTTTTACCTTTTCTTTCTTCAGTCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAG</genome_strand>
        <mrna_strand>GGCGAGATATCACCGCAATTTTAGCTTAACTTGCGCGTTATTACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGAGTCTTGCTTCAATGGCTAGCTCTACCTAAAG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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TCAAATTGATGACGAGAGGAGCATGCTTTTAGTATAAACATCAGTAAACAAAAGGGACCAATTTTAACCAAAATGCAAATTGGACCATCATTGCATGTCAACTTTGTATTTTTACTCACACGNTGATGTTATTTGTGTTTTTATTCTTTCATGCAGTGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAGAANNAGATCCAGGGGCCTCAATTGACTCAATGAAGGGCCAAATNGTTAGTGCCTTAAATGCATTGGACAG.........................................................................................................................................................................................................TCTTC-TAAAACCGTCCCAGCTGATGTGCTTG-AAAGGGAAAGTCTGTAGCTGATTCATA-TTTTTTGCTGGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589646" ref_strand="-" ref_description="SGN-E589646 [43224]">
      <seq>tgcgcgttattaccggagacaaggcgggaaagcagacgatttggtcaacatagcccttggagtcttgcttcaatggctagctctacctaaagatgcagtaggagctagcccttttgacaagtatgtgaaaaggaaacagcttgatccactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattagagaaatctttggaggttgatcaacctaaatatggagattgccggaatatattgcgttctggtcctgcatcatctcttcgtgtcaatattcgagcagtagcacaatacgcagctgatggtggcaatggtaaatcagctttcagtgatgttgatcagtgtctgagtgcattggaaggacttgactcgttgcttttgcgtgcatcaagaaaggatccaggggcctcaattgactcaatgaaggcacaaattgttagtgccttaaatgcattggacagtcttcttaaaaccgtcccagctgatgtgcttgaaaagggaaagtctgtagctgattcatatttttttgctggtgaggaagacgtagcacctgagagactggaccctgagctgaagcaactggaatctatactgtaaatacgaaagcctctttcttgatcaggtaaatgtttttgtattgctcatgagttgatgggcagagatggggttgctctttactctcttaattgatgcaggtcattcaaagtatgtaattagttttgttttatatctctattgaatagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="41650" stop="62931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41950" g_stop="42040" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294">
            <donor d_prob="0.885" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="42374" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="132" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="203" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60647" g_stop="60741" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="298" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61522" g_stop="61589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="366" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61590" i_stop="62057" i_length="468">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62058" g_stop="62168" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="477" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.673" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62370" g_stop="62662" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="762" r_length="285" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E589646" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589646" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41950" e_stop="42040"/>
          <exon e_start="42335" e_stop="42374"/>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="60647" e_stop="60741"/>
          <exon e_start="61522" e_stop="61589"/>
          <exon e_start="62058" e_stop="62168"/>
          <exon e_start="62370" e_stop="62662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGA-TTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAAGTGAGATAGTGATCGAAATTGGTATTATATATGCAAAAATGAAATTGTAGTTATATTCATTGCTCTCTGTGTGTCTAATTTTCTTGTCCTTCTGAAAATTTGTTTTGGATTAATGGAAAATTTTACAAGCGACTTAAGAAAGTTGTGTTGGAACTTTTTCATTTGCAGATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAGGTGAGCACAAAAGTTGTGGGTATTTGTAATAGGTTACCTATATAGTTTTTATATAGTTGATGCTCTAATCCCATCTTGATGTCTATTGCTAAAAGTGAAGTGTCCAGTTCTGTATTCAGTAGCCAAAGCATTGTTAAAGTCCCTACATAGATGAGCTGCTTGGATAGAAAGAAACCTCAGGTGCCATCAGAACAAGAGCAACAATATCCAGAAGATGAAGATGAAGTGCTTAGTTCTGTTTCATTTTTGGTGTAAACAGGAGTATAGGGAAGATCTAGAATCAATTATGGATGTCTTAAGATCTTTGTAAGTTTTTGTTAAAATGGTTGAAGATCTTCTGGATACTCCTCCTCAATTGTAATTAGGAAACCTGTAACTTGTTGTGGTAGGATTCTGTTCTTTTAGAAACAGAATACAAGTTGTTACCTTCTTAAAAAAAAAAAAGGTCCTCACATACCAAGCCTTCTAGACATCACTCCCAATTTGAATTATGTCCCTCCACAACTCCTCTCTATTCTGACTTCCTTTCTTGGCATAGAAAATAGTTAGGTAGATTGAAAAAGTATCATTTGCAACAGACACTAGAATGAGTAAAGAAGAGACATTTGGTTTCTAGGTGTTTTCTCTGTATGGTGACTGAGGAGACAAACAAGCAGCTTTTTTTGCACTGCAAGTACACTGCTCAGTTGTGGAATTTGTTTCTCAACATACTGGCTATAGCTAGGCCATTCCTGAGCATACACCAGACCTTCTTAGTTGCTGGATCAGAAGAGGGGGAAGTAAGAGTCAAAGAGATGGTGGAGATTGATTCCCTCATGTATATGGTGGTCAGTATGGAGGGTGAGAAATGCCAGATGTTTCAAAGATAGGTCCAATCCCATTCATAAAGTCAAATGGAATTGTGTTGTATCTTTACTCTTTTGGTGTAAACAATTATGTATAGAGGATACTGATCAGATTATAGATCTGATAGGGAGTCTGTAATTTAACTTTTTGGTGGTGGCCAGCATATCCTTAATGCTGAAGAATACAAACTTACCTATTTCGAAAAAAGAAAAGAAAAAAGAAGAGTATATTGTTGATGAACCACCAGTACCTACACTTGTATATGAGCCCTCCATAGTAGTCATACCCTACCATGAAAAGCCATAGGGTAGTTGAGACAATGTTTGCAGTCAGTATATTCCCAGACTTTTGCATTTTAGTTCTACTTTCAATAACTCCCATAATTTCTATCTTTTATCTTTTCTTCTGCAGAAAGAGCTTCAACTCTTCTCTTTCAAAGGTTGGCTAAGCTTTCTTATGTTCCATATGGAGATAATCACTGAGGGAGATGGGTATCCCTCGGGTCTCCAGTGTGAGTGATCCTCACATCTTGAAGAGCTTCATAGCCATTTGCAACCTTCACATTTCACATGCTCCTCTATTTGTAGAACTTTAGGAGGCTACACCTTTTTTTTCCAGTTATATCTAGGTTGTTTAGGTTTTCGGTTCCTGGGCCTCTTCTTGTTGACTTCCTGGGACTTAGGCTCTTCCTGTGCTTCCACTTCAGAATCCATCATGCTTCAACTTTTTGGACAAATGTCATACACTTTGAACAAAGTTTTGGATGCCAATTATACTCAATTATGAAAAGATCCAGTTGGTATCATTACTTCAATAGACTCCAAGAGTGGCCATGATCAGCTTCAACTAGTACTCTAGCGTATGATTTTCGTGCCATTGAAGCAGTGAACCTGTCAGTGAGAGGGGTTTCCCAGTGTCACTCGCAACCTTACTCAATACTTCATCAGACCAATAGGCCACCGGAATTCATGGTAGCGTGATCCAAAGGGGGATTTTTCTTTGAACATGTAACATGTTTGTGTATTAATAACAAACTACACAAATGGTGTGTAATCACCCATATTTACATCTAGATGAGCAAAAAAATAAGCTCCCTAATCTTCTCATTAGGAATCTAGTACATCATATATTGATTCTAACTCTTCCACTAAGCTATGTTTACACCAAAAAAAGAAAAGCCCTTAACATTTTATCTTTAGTATCTGAATCCTAATGGCTGTCTTCAAAACACACTTGGTTTCTTTCTTTCCACTCAGTCCACCAAATGCAAGCTGGGAAATTTTCCATCTCTCTTTCTAGTTGGAGGGATTGGTATCACTAACTCAACATTTCAGTACCTCAGATACTCTTCCCAGCATAGTCCAGCTAATGCCTCTCAAGTTAATAAAAATCTTCCACAACTGATCAGTCCAGCTGCAATGAAGAAAGAGATATGAGAGATTGTCTCTGCTTCCTTACCGCATAGGAAACACCTTGAGCAAAAATTGGAACCTATCCTCATGAGTTTATGTTGTGTGAGTACAACTTCTCTTGCTAGTAACCAAGAGAAGCATGCAACTTTGTGGGGGATCTCAACCCTCCAGATGATCTTCCCAGTCCAAGTCCCACTCTAATTGTTTGAGGTTGTGAATACTCTGTATGCTGCTTTCACTGTAAATTTGTTCTGCTTATTTCTTAGCCATATCAAGCAATCTACCTCAGTTGATGTTCTTTTGAGCTGTTCAAAAGTTCTGAAAAAGCTTGCTAGCCTATCGATTTCCCAATCATTTAAAGTCTTCTGAAACTCAACTGCCACTCCTCTTCACCCCTATACAACACACCTTACCATCCTTAGAGCTAGGAGGAACATAGGATAGTGTCTTATCTTCCTTCACACTCCTATGCCCTAATCTTTTTTCTCCGCCAGATGAAGTACCAGCTTCAGAGAATTGTAGCTAGCAGGCTGCCAGTTGAGTACCGTTTGTTCACCCCCATATGGCTCCAGATGGATAGAGGATGAAGAGTTGGAGTCCTCTCCTTTATCCTGAACAATTAATGAAATCATACTGGGATTAAGCTTCCAAACTTTATTGATTGCATTCTACAACTCATTCCATCCTCCGATGTGACCAATTTCTCTCTGATTGTGCATCTTTACCAGAATGTAACTGTCTTTGTTCCCTTCGTCTCTTTGTCCACGTCATCGGGGTTGGTCCTTTACCTTGTCTTCAGCATGGTCCTTCTCTCTTTTCTGAGGATACCTCTCCGGCGGGTTGATCTTCACAAAACTTACTTTTTAATTGTACCCTGTCGCATAGTGTCCATTCCTCACCATGCCATGTGCGTTAGTCAGTTCCAGCCCAATAGAGTTATATGGTTTTATTTAATAATAATAAATTTGATATGGTTTTATTTAATAATAATAAATTTGATGATGTATTTAATGACTTGAGTTTGCACTTGGGTCTTTTTTTTATTGGAGTAGTTTGCACTAGGAATATTTTAGTGAAAATAATAAAAAAGAAGGTATCTTTTTAGTATGATAATGAAAGAGGCGAAGCATCGATAGTGATTTTATTTAGTTCAAGCAAGTTTTCCCTGGTTTAATTTAGCCCGCAATTTAAATGAAGTTAATTTATTTTTTTTCTTCTGTGCCCCTCTCAATTCTCAAGTCAAATTTATCTTGGGCAATCTGTTCTGTGAAGTAAACTAATTTCCCAAGTGGCGTTGACTATTTAAAATGTGCTAAGCTTTGGGTTCAAAGCATTGTTGCCTGCTAGCAAAGATGAAACTTGTATGTGGCAAAATTTTGTCCCCACATCAGAAAAAAAACAGTTTTTGTTTTTTCCTCAAGTGAATTACAGGATTGCCAACTTTTGTATTTTCACAACTATTGGTATTCATGTCAGAACATAGGCTCAAATAGCTTGTATAACTTAGTGATGTCAGGTGACTCTGTGCCATAATGTTCCGCAATCTTCATTAATTTCCATCACCCTGCCATCCTAACTTCACATCTGCCAATCTGCTTTACTTAGCTACCGTGATTGGTAAAATTATCTTTTGCTCAAGTCATTGTCATATGTGTTCTCACTTTAGTTTATAAGCCTGCGATACATTGCGATTTTGTTTAGTCTTTAAATTGAGTTGTCGTGTTCATTTTATTATTTTAATTTTTTGTTTTGATAACTAGGAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTCTAACGAACCAACGCCATAGGTCGTAGGAAGAAAACATTCGGTTTCATACTACAGTGCCCCATAACCAGATCCATATCAGGGGACCATAACATCATGCTGCAATCAGTGTGTCTATTTAGATCGAGTATTTCAATGATCTTTAAAGCAATACAGAGATATACTAGATTTAAAGGAGTAACAATGGATAGACACCCGAAGTTGGCACCACGGTCAGATAGACACTTTAAATGTGCCAGTGATCATTAGACACCTTTTCTTGATAGAAATTTGTATCATGAACATCTATCTGCGAGATCACCCGCTTGAGACTCACTCTTTGCTGATATCAGATGGTCAAATGAAATAATGACATCTGTAATCTATTTTTTTTAATAAAAATAGAATTAGAATAACTTATAAAATACAAATTTTATTTATTTACCTATACCATAAGATGGTAGATTTCCTAGGATCAATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACTTTATCAAAAAAAAAAAAACTATACTATAAGATGGAGTTTACATGCCAAAGCAGGCAGTGGGTCAACATGTCTACTTTGGCATGTAAGGTAGTTAGGTGATTTTAAATAAAATTAAATAACATGATTGGCTTAAAAACAAGTTAGAAACTTAAATGATAATGTCACTAAAACACAGGTGGTTAGAGAATCTTGAAAAAGGTAACGTTTGGCAGCTACTGAGATGCATTTGGCGGAGCTCAAATTCATTTAGGTGATTTCAAAAAAATTCTTGAGTTATTTGTTTGTATTTTTTTTAATTTGTTATATATTTGAAAATTGTGTATTATAAGAGGGAGTTTGCATGCCAAAGCAGGCAGCAGGTCAACATGTCTTCTTTGACATGTAAAGTTAGCTGGGTTATTTTAAATAAGATTTAATAACATGACTGGCTATAAAACAAGGTAGAAACTTAAATTACAATGACACTAAAACACATGTGGTTACATAATATTGAAAGGGGTAACTTTTGGCAGGTACTGAGACGCATTTGGTGGAGCTTAAATCCATTCAGGTGTTCTTAAAAGAATTCTTGACTTATTTGTTTGTATTTTTTTAATTAGCTAAATATTTAAAAATTTTCATAAAAAATATCATTAATCAGAATAATTAGCAACTTATAATATTTAAAAGACAAAAAATCGAATTGACTCTCGAATTCTATTAGTGCCACATAAATTGGAGAAGAGGAAGTAACATGTATTATCTGAAAATTAAGCTAAAAGTACTATCAATCTCAATAATTAATAATTCAAAATATTTAAAAATCATATAACAATTTAGTTGACTCTCCTAATTCCATCCATGCAGTATAAAATTGAGATAAATAGAGTAACACATATTGAGCATGTGTTTGCACGGGCTCTCCAGTAAATATGAGAAAAGCACTCTGTTCCTCTAATTTCTTTCATCAAATGTTTCAGAACTGAACCTCCGATCCCCCCCCCCCCCCCCTTTTTTTTTTTTAAGTTGTATTCTTCAGCATTAAGGTATGCTGGCTACCTCCAAAAAATTACAAGCTAAAACCATAATTACATTGATCCTAGGAAATCTACCAACTGTTCTGCTACTTCTATACCTTCTTCTTTACACCAAAAAATCAACATGTTAATGCGATTTTCTTTAACTTTCTGCATAGTGTTAGTAATATTCTCATGACACCTAAGATCTCTTTCTCTCCAAATAGTCCACCAGACACAAGCTGGTACTATAGACCACCATTTGTTTTATGTCTTGCTCCCCCCCCCCCCCCCCCTCATCCAGCAGCTCAAAAGATCAGCAGTATGTTCTGGCATCACCCAAGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGAACAGTAACCCTACAGTGTAGAAATAAGTGGTTGTTCGTTTCTTCCTTCTCATGACAAAAAAAACATTTGGAGACAATCTGGAAGCCTCTTTTTCTGAGTTTCTCCTGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAACATTTTACCCTGGTTGGAGTGTTGCCCTCCCATATTTGTTTCCATGGACCATGAATTCCCCCAGAGTGAGTCATGACCTCTCTCCTATACAGTCTACGTACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCCGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCGTTTAGATTTCTCCTGAAGGTGAGGTTCCATCCCTGACGGGACCAAATCTCAGAAATTTTAGCCTCAGGATTGGTGCAGAACGAGAAGAGATCAGGGAAAACCGTGTTTAGACAGTCTTGTCCAATCCACTTGTCCCTCCCAAAAAATACTTTGTTGCCCTCTCCCACCTTGACCACCAAATTCTTCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACCCCATATGTGCTATCTACTACATTAGACATCCACTCCTCGGTCTGCCCATACTTGTTGAGAATTGCTCTTCTCCATAATGCCTGATCTTCAACCACAAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCCTCAGATTTTTTATGCCAAGACCCCCTGTCTTCTTGCTTAGTAAGGCTGTCTGCCATTTAACTGAAGTGTATTTTTTCTTCTTCTTTGTTCCCCGACCATAGGAAATCCCGCCTCAATTTATCCAACCTCTCTTCTACCTTTGCTGGTAGAGGGAAAGGAGACATAACATATGTAGGCAACACATCTAGGACCGAATAGATCAGAGTGACTCTTCCTCCCAGAGATAGATAGTTTGTCTTCCAATTAGCCAACCTCTTCTCTGTCTTCTCAATGATTCAATCCCAAATCACCAGCTCCTTATGATTATTCCCCAAAGGCATTCCCAACATCTGAATATTTGCCACTTCCTTGACTTGGAAGATGCTGCTTTTCGCCCAGTTCACAGCCAGTCCGGAGACGGCCTCAAAAATCACCAAAACAACTTTAATGTAACTAACTTGTTCAGCCTTTGCATCGCAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATCTGCAAATTGAGTCCTGACTGATTACTAATGTTGAAACCCTTTATCCAGTCCTTCTGATTGGCCGCTCTAATCATACTGTTAAGACCCTCCATAGCTAAAATAAAAAGGAATAGGGAGAGAGGGTCTCCCTGTCGTAAACCTCTCTCAGAAGGAAAAAAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAATCCTATCCATTTAAGCCATTTGTCTCAAACCCCATCTGCCTCAGTATATTAAGTAGAAACTCCCAATTGACATGATCATATGCCTTTTCTACATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTCGAGTCTACACATTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATGAAGGCCATTTGGTGATTATTCACTAATTTGCTTATCACTTTCTTTAATCTCTCTGCCAACAGCTTGCCAAAAACCTTGTAAACTCCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCAAAGCTCCTGTCTTTTTTGGGATTAGAGCCACATAGGTGACGTTGAGACTCTTCTCTATTTCATGTCTTTCATCAAATTGTGTCACTGCATTCATGAAGTCTGCCTTCAGTATCTCCCAGAAGTTTTGGAAAAAACTCATCGGAAAGCCATCTGGTCCGGGGGCCTTATCACTAGTACATGCTTTTATGCAATTTAAAACTTCCTCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGCTTTCTGCTCCCTGTACTTTAATTTCTGGCCTCCATTGTTCTGTTTCTCTGTAAAGATTTTGATAGTAACTGATTATGGTTCCTATAATTTCTTCTGAATCTGTTACTGTAACCCCTTCAACCATCAGCTTATCTTATCAATGGTGTTGAATCTTTTATGAGCTGTAGCCATCCTGTGAAAATACTTGGTATTTCTGTCTCCGTGTTTGAGCCAGTGTATTCTTTCGATCCCTCTCCCCTTTTTCTTTCTACACCTGTCGTTATCCTCTCCCTCTTTTTCTTTGAACACCCCCCCCCCCCTCTTCCTCTTCTTCTTCCCCACCCTTCCTCCTCTACACCTTCCACCTTTCCCTTCCCCGCTCCTCCTTCAACAAATCTGTCAAAACTGTTGCGGGTCAGAATCTCTCTCAAAATTCTGAAATGTTGTTTTTTTAAAAAAATTGTAGAATTATCAAATGTTCTCAGAGTTAATTGAGCATTCATGTTTTTTCTTAAATTTTGATATCGGAAACATTATGCACTCTTCAAATAAATTATAGATTTTAAGTTGTACTTCATGTGAAATTAGTTGGTTTTTGAGTCATTATGATTGAAGTCCATCCTGTGCACTGCTTCAGTATGTTGTAATGTTAAAGCAATTCACTCTTATTATACAAGATGTTGTCGTATCAGTTCATATTTTTTCAGTTGGTTGTGGTGGTATATGGTGGAGGTGGGCAGAGGGTGGTGGAAAAAGTTGGAGTTAGAATAGGTCACTTCCATAATGTGTTGCCTCTTCTTTTTTTTTTTTGAGAAGGTAACGATTTGTATTATAAACCAATACTTATGTAGTACTGAAAGCCCCTTTACAAAAACGTATGAAATTCTAGGAACAAAAACAGCAAGCCTAGCATGATTCTAATACTTTTCTTTTTTTTGAAATAGATGATTCTAGTACTTCAAGGATTGCTTCTGCATCTACAGGGGAACTCTTTGTACACCAAAAACATAACAAAATACAATCTGTTTTGATCATCTGTAGGGATCTATCCTCAAAGCTTCTAGCATTCCTTTCTCTCCAAATGGTCCACCAGATGCATGCTGGAATTGTCCTCCAATAATTTCTGTTCTTTGCCTCAATTCCTGCATCCTCCCATCTTGAGAGAGTGTCAACAATCGTGCTAGGCATTGGTTATCCAGATTTGTCTCCAGGCCAATTGAGGGTTAGAGGAGTCCTGATCATGACCTTGTAACCTGAGCTCACTTTGAATCTTCCTTTGTTGTGCTCTGTCCACCGTAGGCAGTCCTCCCCTTCCTTCAAACCTTGAAATGATTCCAACCTTTTAAAGAATTCAACTAATCTACAAACTTCCCATTCATTTAAATTCCTTCTGATAGTTAGATCCCAACCTTGGGGAGACCACATTTCAGCCACTGTTCTGTCTTTATGCAGTGCTAAGTCAAAGATGTTGGGGAAGATCTCTGACAAATTTTGATTACCAAGCCATCTATCTTTCCAGAATTGTGTCCTGACACCATTGTGTACTGTTATAGTAGTATGATTCCTTAGGAAAGGCCACCAGTTCCTAATTGATCTCCAAACAGTAACACCATAGGGATTGGTTGCTTCCTTGGTGACCCATGAATCCATCTCTCCGTACTTCACTTTAATCACCTTGTTCCACATTGAGTGTGGTTCATGAGCATATCTCCACAACCATTTCAGCTTTAGAGCCTTCCTTTGGTTCTTCAATTTTTTTATGCCTAATCCTCGTTTTTTTCCTGTGATCATAAATCTCCATTTTACCAGATGGTATCCCTTTCTTTTCTTGTTTCCTTGCCAGAAAAAATCCTTTCTTAGTTTATCCAATCTCTATACTACTCCTACTCCTGCAGGTATTGGAAACAAAGTTAGCATGTACGTAGGAAGGGCATCCAAGACTGCATTTATCAGAGTGAGCCTGCCCCTTTTGATAAATATTGTGCTTTCAATCTGACTAACTTCTTCTCACATCTCTCCAAGACAGAATTTTTTAATTTCTTTGTACTGTGATTTTGCTCCCAATGGCATCCCAGGTAGATAGCAGGTAGTGCTCCCACCTCGCCTTCTAGCACTGAGGCCAAGAGCTCCATATTGGAGACCATGTTTATGGGATATAAATGGATCTTTCCCCATTGATGTGAAGACCTGACATACCTTCAAAAAGCACCAGAATTACCCTAGGGTATCTTAGTTGTTCCTCATCTGCATCACAAAAAATCAAAGTGTCATCTGCATATTTGTGTAACCTCCAAACTCTTCTCATTGTTTGTGGACACTTCAAATCCCGCGATCCACCTATTTGTTTTAGCTGTCTTGATCATGTTATTAAGTCCCTCCATGGCACGAATAAAGAGGAATGAAGATAAAGGATCCCCTTGTCTGATTCCTCTTTGGGCTTCAAAAAGACCTTCGGGAGCACCGTTAATGAGGACAGAAAACTTTACTGTTGAGATGCAAAACCGTATCCATCTAATCCACTTTTCTCCAAATCCCATTTTCCTGAGTATATTGAGAAGGAACCCCCAGTTAACATGATCATAAGCTTTCTCAGTGTCCAGTTTGCATAGGATGCCTGGTTTCTTTTGACCCACTCTAGAGTCTATTGCTTCATTTGCTATTAAGACCGCATCCATGATTTTTCTTCCTTTGATGAAAGCCATCTGTTGGGAGTCTACCAGCTTGTACATCGCCCTTTTGATTCTCTCTGTTAAAACTTTAGACAAGTTGTCATAGAAACTGCCTATCAAGCTTATTGGTCTGAAGTCTTTAAGTTCCTTTGCTCCTTTCTTCTTTGGGGTCAAGGCAATATAGGTAGCATTGAAACTCTTCTCAAACATTTCCTGCTCATAGAAATAATGGAAGGCCGCCATGATGTCATGCTTAAGAATTTCCCAACATTTGATGAAAAAACCCATAGTGTAACTATCAGGTCCTGGGGCTTTATCAATTACACATAACTTCAAGCATTTATAAACTTCCTGCTCCTCAAATTTGGCCTGTAGTTGTGATCTTTCTTCCTCTGATATTGAAGGACAATTCACTAAATTTCCGTCAGGTCTCCATCTTTATGTTTCAGTATACATTTTCTCATAAAACTTGATAATTTCCTCATTACTCTGTTTGGTTCTGTGATGGTCTTTCCCTCTACTTCCAATTGGTCAATATGGTTGCTTCTTTTATGGGAATTTGCAGAATTATGGAAGAATTTTGTATTGTTATCTCCTTCCTTCAACCACAAAATTCTAGAACTTTGTCTCCAAGCACATTCCTCATTTTTTATCAGTTCTTCGTACTCCATAAAGATCTCTGCCTTCAAAGTAGCCTCTTCCTCTGTCAATGCTCTTTTGTTCAGCAAAGAGGGATTTTTTAGCCTTTGAAGCTGTCACAGGGCTGGAAGCTTACCTTGCGAGGAGTCACCTGTTTAGTGTTGATATTGATGGTAATATTGAAGAGTTGGCTGAAATTGTGATGTAACGTTTCTTGTTGTATATTTGGGACTTCCTCTGAGTGTAAAAAACAATGATCAAATGATGGTCAATGAGTTCTAGACATGTGCAAAGAAACTGATCCCCCGGGAAAATAGTATTTATCTTTAAGTGGAAGGCGCACTCTAATCAACATAAGAAAGAGGGGATTGATCAAAAATCTCATCCTTTTCCTTGAAGGCTGATGTGATTTGTTTCCAAGATTCTAAAATGGAGGGGGATATGAAGGAAATAGTAAGAGAGTTATGGGGGGTCAGATGGATCAGTTATACTCAACTGGAGGCAAGTGATATTAGGGGAGGGATTATCCTAAAGTGGGACAACAGAATTTGGGAAGGGGAGATCAGCAGTATAGGCTCTTACTCTGTAACCTGTTATCTACAGTGATTACAGGTAATAATCAGGATTTCTCTTGGTATCTTACTGGAGTATATGCATTAAATGACATAATGGAAAGGGAAGAGGCATGGTGGGAAATTGCATCAGTTAGGGTCTCTGATTTCAGGTCCATGGGTTGTCTCTAGAGATTTCAACACGGTTAGACATCCATCAGAAAAGAAGAATTGCAACAGAATTAAAAAATCAATGACAGACTTCTCCGAATTCATTGAAGACATGGAGTTGATAGACTTCGATTTAACATGTGGTCAATTTTCCTGGAAACAGGGGGATAGACAGGCAACTGCTGCTAGACTAGATAGATTCCTAGTTTCAGAAGGATGGAACACACATTTAGGACTATAAGACAACTTGTTATTCTTAGATTGACCTCAGATCACACAACGCAGATGCTACAATGTGGTGAGTATGAACTCGATAAATCTTATTTCAAGTTTGAGAATTGGTAGCTTTAAACTGAAGATTTTGGTGACATTGGTGACAGAGTGAAGAACCGGTGGGAGTCTTTCCACTGCACAGGAAGGCCCGACTATATCTTGGCTTTCAAACTGAAAGTTATGAAAGGAGAAATTGAAGGAATGGAGTAAAATAGTCAAGGGTAATATGGAATTATAGAAACAGAACATACCAAACCATTTAACATAATTAAAGGAGCCAAGAACAGAGGATTTTGACAGAAGAAGAAATAACCAAGAGGCTAACTTTATCACTGGAATTTGAAGATATCGATAGGCATGAGGAGACTGCTTGGAGGCAAAGATCCTGGGTACTATGGGGCTAAATTAAGGAGATAGAAATACCAATTTTTTCACAGGACAACTAATGCACACAGGAGAATAAATACCATCGGTAAACTAGTAGGAAGAGGAGAAACTTTGACAGACCCAATCAACATCAAGAAAGAAATAATCTCTTTCTTGAGTTCTCTACTCAGAGACAGAGGAATGGATACCACACTCTGCTAGGAGCCTGCAGGAACTGTCCCATGGTCAGTGCAAAAGACAAACTAATGTTGATGGCCCCCTTTGAACCACAACAGATTCTGGACTGCTCTAGGACCAGATGGTTATACTCTGGCTTCTTCCACCAATGTTGGGCAGTGATTAGTTCAGATGTAGTAGCTGTAGTACAAAACTTTTTATAATGTAGGTTTCTTTCAGAAGAGATATAGTGCTATATTTGTAGCTCAACTCCAAAGAAAGTGGGTGCTATTGAATTAACTGATTCCAGCCAATCAACTTGATTGGGAGTGTCTACAAGATCTTTTCCATACTCTCAGCAGAAAGCTTGAAAAAAGTAACCCACAACTTGGTGCCAACAGATGGCCTTCATCAAAGGAAGACAAATCATGGATGCTAGCTACTATGATGGCAATTGAATGTGTTGAAGGAATGCAGAGGAGCAATTTGCCAGATATCTTATGCACACTAGATATCCAAGAAAACTTTTGGCCATCTTAACTGGAACTACCGTCTTGAACTATTACAGAAGATGGGATTTGGATCCAAGTGGATAAGGTGGATCAAACATTAAACCGGCAGAGTCAAATTCTCAGTATTGGTCAACAGAGCCCCCTACTGGTTTTTTCTCTTCCTACATAGGCTTGAGACAAGGAGCTATAGAAGGCATAAGCAATATGATATAGACTGCAAAATTAAATGGATGGGTCAAAGGTTCCCAAGCAATTCCCAGTACAGTGAACGACTTACAAATATCCACCTGCGGTATACTGTTGACACCCTGGTTTTCTGTGAGGCTTCCAAAGAACAAATTCTATTATTGAGAGTGATTGTCATCCTTTCTGAATCCATATATGCTTACACATTATTTGGATAAAGAGCTACATTTATCGTGTCAATGAAATGGCTGATATTCAATCCTTGGCTGATGTTTTAGGAGAGACATGAACACTTCCTACTAAATACTGGGGTATGCCTCTTGGTGCAAAGAGAAAATATGTGAGATATGGAATGAGGTGTAGAAAAATGTGAAAGAAGACTAACCAACTGGAGAAGTCAATATATCTTTATGGGAGGAAGATTGACTTTGAACAACAACATGCTTGATGCTTTACCCACATATATGATGTCTATCTTTCCCTCCCCTATATATGTGATAGAAAAGATAGACGCCTTAAGGAGGAATTTCTTCTGGCTAGACAATGATGACAAGAAAAAATTCATCTTGGGTAACTTTGACAAAAAAACAAGAAGAAAGGGGGAATGGGAGTCAGGAACATGTTGATGCACAATAGACGTCTGATTATGATGTGGTTGTGGAGATTTGATATAGATGACAACCAGCTTTGGAAACAAGTTGCTAAAGCTAAATATGGAAAAGAGGGGTTATGGACAACAAAGGTAGTGACTACTTTCTATGGATGCAACATCTGGAAATCTAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTGAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTATCTTGTGGGCCCAATGATGGTTGACTTTTTTTTCAAACTAGTGTCACGTAAGCTATAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAAAAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGGTTGAGGGGGTACTTGTGCATTTTTCCGGAAATCTATCCGAAACCTTTGGCCGATTTTCCAACAAAGAATAGGCTTCAAAATTGGGAATGGAATGAAAAATTTCCTGTTGGAATGACGTTTGGATTAGAGAAAACACACCCAATCATCTCTTTCCAAAATTATACAGCTTTTGTCAACAAGCATCAATAGCTGACATGTGGACAGACATGGATTAAAGACTTATTGACCCTGGGAATATAAGAAATCAATGTATTTAGGGAACCGAAACTTATCATCTGCCAAACTCAAAAGAAATGAAAAACGGGCAAGTATTGAGTCTCAGATTTAGAAGAATTTTTGAATAATTGAGAGATGGAAAAAATTGCAGATTTCCTCCACATTCTCAGTTAAATGGTTTTTTAGAAGAGGTGGATAGCTTAGTTTGACATTGTCACAGCAAAAGGGAAGTTTTTGTAAAGTCTATATCTCACTAGCTCCAACAATCAAGTGGGTTGTTCACTATGGAAGATGAGCTGGTGGTGAAAATTCCTTACAATGTAAGCTTGTTTCACATGGCTTTTTACTACAAAAAAGGTTCTGACAAATGAAATACTTGAGCAAGAGAGGAATGCAACTATACTCAGATGTTATCTCTTTGTAATGAACAAGTAGATATAGTTAACCACCATTTTTTTTGCACTGTAAATGGACATATCGACTATGGAAACTTTTGATCAACTTGAGGAAAATTTAGTGGGTGATGCCAAGAAGAATAAAGGGAGTGCTAAACTTAAGGAACAGTGATGGCAATGCAACTAGCAGGGAGGAGATATAGAAAGATCGTCTCAGCTTTATTTGGTGGTCAGTTTTGACTAAGAGAAATCAGAGATGTTTTGAGGGAAAACATTGTGACATCCAGAAGATCGTGATAAATTGCCTACCCCTCTATTATTTTTGGTGTAAACAGAAGTTGTTCATACAAACTGAAGATATTTTGTATGTTCACAGTTTATAATAGTTAAGTTTTAACAGATAAGACCCTTATGTAATCAGCCTACTTTTTTGTCGGACTAACAATTTCGTGATGTAGTATTCCTGTTGATATTAATTTTTACTTTTATGAAAAATTTACCAACTCAAAAATATCATTTGAATGATCATGATGCAATACGAAGAGCATATATTCAAAAGTCTTTTCCAATTTCAAAATTACAAGTTTCTTCAATGATGAGCTTTTGAGTAACTATTTGGTATTTATAGAAAAAAGAACATTTTTAATATTTCCAGTGAGTTTATGATGGACACGTCTTAGAAAATGAGAACTCTGAGGAGAGGTGCAACAAACAACAACATACCCAGTGAAACTCCACAAGGTTTAAGGAGGGTAGAATGTATGCAAACCTTACCACTATCTCGTGGAGGTAACGATATTGTTTTCTGAGAGACCCTCGGCTCAAGTGCAACAAATCCCGGTATAAAGGAGACAATGAAGATCGAGGAGAATTTGGCTAATAATGAGGAAATGATGCAAAAGTTTACCAGAGAGATTAATCATGTGATAATCCAAACTCCATAAACAACACACTAGGGTAGACTATTAAGAAAAAAACAAACAATTATAAAAATAAAAATAAAACAAAAGAAGTACAATAATGCAACTAGTACCATTGCAAACACCAGCCACCCTATGCACGACAACATTACACTACCTACTAATTTTCTACCCTAATACGTATCCTCCACACCCTCTTATCTAGGATCATATGGTCGGTAGCTTGAAACTGCATTATATCATGTCTTTCATATCTCCCTAATACTTCTTCGGCCTACCTCTGCCTCTCTTCATTCCTTCTATAAACAACCTCTTGTACCTCCCCATTGGTGCATCTATGCATTTCCTCTTCACATGTCCAAACCATCTGAGTCTCGCTTCTCTCATTTATCTACCACTGAGGCCCATCCCACCTTATTTTGAATATCCTCATTTCTAACTTTATCACTACCTAGTATTATGGGTGGGCGTTCAGTTCTTTGGTTCGGTTTTATCAAATTTCACTTCGGTTTTTCGATTTTCTGTTTTAGAAAAGTGTGCACCATATACCAAACCAAAGTAATTTGGTTCCATTCGGTTTAGTTAGGTGTTTTTAAATTGGTTTTTCGGTTCGAATGAAAAATAAAATGAGGACAAAGTCAAAGTGTAAGATAATTAAAATTTAAAAATATGTTGAGGGATCATGTGTCTCTCATGGAACGCTTGTTGTGCTAACTAAAAGACTAATCATCTTTGTCAAGAACATTGTGCCTTCAACTATTTCTCTAGAAAAACAAGGACGAAGACGGGTTCCTTAACATAACATACATTGATAAAAATATGTTTTGGTTATTCTTGAAAACTAATATTTGAAGTTAACTATTAATTATACATTTGTTTTGTTTTTTTTAATTTGTTCATGAATGATTTAATTGTTAGTTGAATTTTTATTATTAATTTGTATTTTTTTCAATAAAAGTTCGGTTCTTCGGTGCACTGAAGTTCTAAGACCCTTACACCGAACTAAGGAACCGAACTTTTGAAAAAATAACACCGACACCGAATCGAAAATTGAAGAACTGAATTAGTTCGGTTCGATTTTTCAGTTTCCCGGTATTTATGCCCACCTGTACCTAGTATGGCCACACATCCACGGACCAAACATCCATCGCAACATTCTCATCTCTGCAACTTGCATCTCTTGGACATGGGAGTTCTTAAGTAGCCAACATTCAGTTCCATACAAAAATGTTGGTCGAACCACCTTGCTACACTACTTACCTTTGAGTTCCAGTGGTACCCTTTTATCACACAAGACTCTAGAGGCAAGCCTTCACTTCATCCATGTCACACCGATACGATGTGTGATATCATCGTCGATGTCCTTGCTCCCTTGACGTATAGATCCAAGATACTTGAATATATCTCACTTGGGGATATTTTGTGTGTCAAGCCTCACTTCCATGCTTACCTCATGCATCACATCATTGAATTTGCACTCCACATATTCTGTCTTGGTCCAGCTCAACCTCAGCCCTTTAGCCTCCAAAGTATGTCTCCACATCTCTAACTTAACATTAACTCCAAAGGTGTAGTAGTGTGCTTGAATTTATTTTTCTAATATATGGCATTGTTATATTAATTTATTCACTTCTTTAAATGTCGACGGTGCTTATGGAAAATCATGTGTAAGTCACTGGAAGATAACTCTAGGTTCTTACAAGTTGTCACATTTTACTGAGTGCTATATATTTGGAGTGTATTGTTAAGCTTAAAAAGTTCTATTGTAAGATTTCACAGCATGATATTAACATTATCTTTTGGCATTTTATAGAGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAAGTTAAAGTTCTCCCACATCTCACTCTCAACTCTATGAATGACATTTTCTGACGGTTGATAATTATCCATCTGTACAGCTTTTCTCAAAATTAGGAATGTATGAAGCTGATTTGCTTGGTTTAGACTTGTGAATGTTCCATTCTGGTCTTGGAGCACGCTATACATCCTAAGGATGAGTGATAAATTAGGGATGTTAAATGATTTTAAACATTTTGAGACAATTTTTTATCTCGTAGGCAGTAGGAGGAACTTGAAAAAGATTCGAAGAGAAAAAAGCAAGAATTTCTTCATTTATCTGCAAATGCTCTGCTATGCCATATCTGCTGCATGGTGCTAATATGAACATTTGTCATTTAGAAGTCCAAGCGAAGTATTCGAATTAGAGAGTCAGTTAAACAAAATACCATTGCAAGTAGCATTTTTGACAGTTTATCATATGTCTATCAAATCAAGGAGAAAATATCCCGAATGCTCAAATTTTAGTTACCAAGAAAAGAAAAAAAATCTGGGTACATAAAAAAGAAAAAGCTCCAAATTTTTTAATATATCTTGTTGCTTGGTTTGAAAATGGTGTTGCACTGATGTTTTATATTCCTTCACATGTTCGACTAATTCTAGGCAGTTCTTTTTTCTTTTCATTTAGTTATGTAGTTTGTAATTTCTTTTTCTTAACTAGTCTATTGATTGTTGTACAGAGAGATACTTAGGCTTCTTCCTACTACAAAATAGATGATCAACTGCTGAAAAAATTCTCTTATTTTATCATTCAATTTCAGGTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAGGTACTACGTCGTACATTCACCTGTCAACCTGAACAATGTTGTTTAACTATAACGTAACACGGTAACATTATAGCTACGCAGTTAAGGCTGTATATTAAAATTTGTTGTACCTGCACAGGATGATCAGTCTATTGGGTAGATGTAAGAAAATTTTAGAATGTCCTTGGAACACTGATGATTTCTCTAGGTCAGAGAGAGTTCCATAATTGATTTTGTTCCTGTAAGCTTCCTGATTTATTTTCTTGAACAAGGTTGGCTGCAAAAGATCATGTCACGAATATGATATTATTATTCTACACTGCCAGATGGAACACCTTCAAATTGATGACAAGAGGAGCATGCTTAGTATGTACATCAGTAAATAAAAGGACCAATTTTAACCAAAATGCAAATTGGACCATCATTGCATGTCAACTTTGTTTTTTTAGTCACACATGATGCTATTTGTGTTTTTAATCTTTCACGCAGTGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAGGTCATACTTCCATCATTCTGCCTCAGTTATAATTCCTATATGAATTCCCTACATCCTTTCTTCTCTATCCAAATAATAAATAGCGTCTTTCAACCTCAGTGATTCTTTATATCTCAATTATCCCTGCAATAGTTATCTAGTTTAATCTGAACGAGTGGCGGCTTTTGCCTAGTAGTTATTTTTTACCTTTTCTTTCTTCAGTCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAGGAAGAAGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGTAAAAAATTACAAAAGCCTCTTTCTTGATCAGGTCAATGTTTTTGCATTGCTCATTAGTTGATGGGCAGAGAGAGTGTTACTCTTTACTCTCTTCATTGATGCAGGTCATTCAAAGTATTTAAGTAATTAGTGTTGTTTTATCTCTCTACTGAATCGTTT</genome_strand>
        <mrna_strand>TGCGCGTTATTACCGGAGACAAGGCGGGAAAGCAGACGATTTGGTCAACATAGCCCTTGGAGTCTTGCTTCAATGGCTAGCTCTACCTAAAG......................................................................................................................................................................................................................................................................................................ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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..........................................................................................................................TGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGTTAGTGCCTTAAATGCATTGGACAG.........................................................................................................................................................................................................TCTTCTTAAAACCGTCCCAGCTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAGGAAGACGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGT---AAA-TACGAAAGCCTCTTTCTTGATCAGGTAAATGTTTTTGTATTGCTCATGAGTTGATGGGCAGAGATGGGGTTGCTCTTTACTCTCTTAATTGATGCAGGTCATTCAAAGTA--T--GTAATTAGTTTTGTTTTATATCTCTATTGAATAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E607645" ref_strand="+" ref_description="SGN-E607645 [23615]">
      <seq>ttttgacagttatgtgaaaaggaaacagcttgatcactggaggcttatgtaccagctgtgctgctagctggggtgcagattaaggaattaggggccacgtgcggcagcattggaaagttcctaagttgacgggattcgctatcaacatcacagatcctctcccctaaaccctttggttaaatcgctggattgggtaaacgagaaatctttggaggttgatcaacctaaatatggagattgccggaatatattgcgttctggtcctgcatcatctcttcgtgtcaatattcgagcagtaaggtagcacaatacgcagctgatggtggcaatggtaaatcagctttcagtgatgttgatcagtgtctgagtgcattggaaggacttgactcgttgcttttgcgtgcatcaagaaaggatccaggggcctcaattgactcaatgaaggcacaaattgttagtgccttaaatgcattggacagtcttcttaaaaccgtcccagctgatgtgcttgaaaagggaaagtctgtagctgattcatatttttttgctggtgaggaagacgtagcacctgagagactggaccctgagctgaagcaactggaatctatactgtaaatacgaaagcctctttcttgatcaggtaaatgttttgtattgctcatgagttgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="46079" stop="62868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46393" g_stop="46463" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="91" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46464" i_stop="47826" i_length="1363">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47827" g_stop="47842" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="107" r_length="16" r_score="0.688"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47843" i_stop="52589" i_length="4747">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52590" g_stop="52607" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="124" r_length="17" r_score="0.556"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52608" i_stop="54401" i_length="1794">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54402" g_stop="54423" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="146" r_length="22" r_score="0.636"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54424" i_stop="54995" i_length="572">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.231" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54996" g_stop="55005" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="156" r_length="10" r_score="0.800"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55006" i_stop="55069" i_length="64">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.029" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55070" g_stop="55116" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="200" r_length="44" r_score="0.574"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55117" i_stop="60646" i_length="5530">
            <donor d_prob="0.000" d_score="0.57"/>
            <acceptor a_prob="0.855" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="60647" g_stop="60745" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="300" r_length="100" r_score="0.949"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="60746" i_stop="61521" i_length="776">
            <donor d_prob="0.571" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="61522" g_stop="61589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="368" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="61590" i_stop="62057" i_length="468">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="62058" g_stop="62168" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="479" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.673" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="62370" g_stop="62568" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="673" r_length="194" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E607645" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46393" e_stop="46463"/>
          <exon e_start="47827" e_stop="47842"/>
          <exon e_start="52590" e_stop="52607"/>
          <exon e_start="54402" e_stop="54423"/>
          <exon e_start="54996" e_stop="55005"/>
          <exon e_start="55070" e_stop="55116"/>
          <exon e_start="60647" e_stop="60745"/>
          <exon e_start="61522" e_stop="61589"/>
          <exon e_start="62058" e_stop="62168"/>
          <exon e_start="62370" e_stop="62568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAGGTGACATTCGTTTCCCACTTTCACTTTTTTCATTTCCTAGTGTGAAAAACTTTTAGAAAATATCCTCCAATCATATGTTATCGCTCCTTAGTTATCCAATAGTTACAACAGTAATTCTTTCTTTTCAGTAGTAGTTAATTTTCTGTAATAGTACTGTTATTTTCATGTAATAGTGCAGTTTTTTATTTCAGTTAAGTTAGGAAGTCATGTCCTAGTTTGTAGAGGTAGTTATTTTGTAAGTGTTGTACTTAAACTATTGTGTGTCTGAGGAAATGAAAAAACAGAAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTCTAACGAACCAACGCCATAGGTCGTAGGAAGAAAACATTCGGTTTCATACTACAGTGCCCCATAACCAGATCCATATCAGGGGACCATAACATCATGCTGCAATCAGTGTGTCTATTTAGATCGAGTATTTCAATGATCTTTAAAGCAATACAGAGATATACTAGATTTAAAGGAGTAACAATGGATAGACACCCGAAGTTGGCACCACGGTCAGATAGACACTTTAAATGTGCCAGTGATCATTAGACACCTTTTCTTGATAGAAATTTGTATCATGAACATCTATCTGCGAGATCACCCGCTTGAGACTCACTCTTTGCTGATATCAGATGGTCAAATGAAATAATGACATCTGTAATCTATTTTTTTTAATAAAAATAGAATTAGAATAACTTATAAAATACAAATTTTATTTATTTACCTATACCATAAGATGGTAGATTTCCTAGGATCAATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACTTTATCAAAAAAAAAAAAACTATACTATAAGATGGAGTTTACATGCCAAAGCAGGCAGTGGGTCAACATGTCTACTTTGGCATGTAAGGTAGTTAGGTGATTTTAAATAAAATTAAATAACATGATTGGCTTAAAAACAAGTTAGAAACTTAAATGATAATGTCACTAAAACACAGGTGGTTAGAGAATCTTGAAAAAGGTAACGTTTGGCAGCTACTGAGATGCATTTGGCGGAGCTCAAATTCATTTAGGTGATTTCAAAAAAATTCTTGAGTTATTTGTTTGTATTTTTTTTAATTTGTTATATATTTGAAAATTGTGTATTATAAGAGGGAGTTTGCATGCCAAAGCAGGCAGCAGGTCAACATGTCTTCTTTGACATGTAAAGTTAGCTGGGTTATTTTAAATAAGATTTAATAACATGACTGGCTATAAAACAAGGTAGAAACTTAAATTACAATGACACTAAAACACATGTGGTTACATAATATTGAAAGGGGTAACTTTTGGCAGGTACTGAGACGCATTTGGTGGAGCTTAAATCCATTCAGGTGTTCTTAAAAGAATTCTTGACTTATTTGTTTGTATTTTTTTAATTAGCTAAATATTTAAAAATTTTCATAAAAAATATCATTAATCAGAATAATTAGCAACTTATAATATTTAAAAGACAAAAAATCGAATTGACTCTCGAATTCTATTAGTGCCACATAAATTGGAGAAGAGGAAGTAACATGTATTATCTGAAAATTAAGCTAAAAGTACTATCAATCTCAATAATTAATAATTCAAAATATTTAAAAATCATATAACAATTTAGTTGACTCTCCTAATTCCATCCATGCAGTATAAAATTGAGATAAATAGAGTAACACATATTGAGCATGTGTTTGCACGGGCTCTCCAGTAAATATGAGAAAAGCACTCTGTTCCTCTAATTTCTTTCATCAAATGTTTCAGAACTGAACCTCCGATCCCCCCCCCCCCCCCCTTTTTTTTTTTTAAGTTGTATTCTTCAGCATTAAGGTATGCTGGCTACCTCCAAAAAATTACAAGCTAAAACCATAATTACATTGATCCTAGGAAATCTACCAACTGTTCTGCTACTTCTATACCTTCTTCTTTACACCAAAAAATCAACATGTTAATGCGATTTTCTTTAACTTTCTGCATAGTGTTAGTAATATTCTCATGACACCTAAGATCTCTTTCTCTCCAAATAGTCCACCAGACACAAGCTGGTACTATAGACCACCATTTGTTTTATGTCTTGCTCCCCCCCCCCCCCCCCCTCATCCAGCAGCTCAAAAGATCAGCAGTATGTTCTGGCATCACCCAAGGCTCTTGAGAAATGCTGTAGACCATGCGCCACACCTGAACAGTAACCCTACAGTGTAGAAATAAGTGGTTGTTCGTTTCTTCCTTCTCATGACAAAAAAAACATTTGGAGACAATCTGGAAGCCTCTTTTTCTGAGTTTCTCCTGAGTGAGACATGCCCTTCTGGTGACCAACCAGGTGAAACATTTTACCCTGGTTGGAGTGTTGCCCTCCCATATTTGTTTCCATGGACCATGAATTCCCCCAGAGTGAGTCATGACCTCTCTCCTATACAGTCTACGTACAGAGAACTTGCCATCAGAGTCATGTTTCCATCTTATACCATCTGCTTCCGTAGTAAGGCCCGTGAATTCACCCAATTTGAGTAGCAGTTCAGCAATTCTATCCACTTCCCAATCGTTTAGATTTCTCCTGAAGGTGAGGTTCCATCCCTGACGGGACCAAATCTCAGAAATTTTAGCCTCAGGATTGGTGCAGAACGAGAAGAGATCAGGGAAAACCGTGTTTAGACAGTCTTGTCCAATCCACTTGTCCCTCCCAAAAAATACTTTGTTGCCCTCTCCCACCTTGACCACCAAATTCTTCTTTAGACTATCCCATAAATTTCTGATTGATCTCCAAACTGATACCCCATATGTGCTATCTACTACATTAGACATCCACTCCTCGGTCTGCCCATACTTGTTGAGAATTGCTCTTCTCCATAATGCCTGATCTTCAACCACAAATCTCCAAAGCCATTTAGAAAGTAGACTTTTGTTCTGGACCCTCAGATTTTTTATGCCAAGACCCCCTGTCTTCTTGCTTAGTAAGGCTGTCTGCCATTTAACTGAAGTGTATTTTTTCTTCTTCTTTGTTCCCCGACCATAGGAAATCCCGCCTCAATTTATCCAACCTCTCTTCTACCTTTGCTGGTAGAGGGAAAGGAGACATAACATATGTAGGCAACACATCTAGGACCGAATAGATCAGAGTGACTCTTCCTCCCAGAGATAGATAGTTTGTCTTCCAATTAGCCAACCTCTTCTCTGTCTTCTCAATGATTCAATCCCAAATCACCAGCTCCTTATGATTATTCCCCAAAGGCATTCCCAACATCTGAATATTTGCCACTTCCTTGACTTGGAAGATGCTGCTTTTCGCCCAGTTCACAGCCAGTCCGGAGACGGCCTCAAAAATCACCAAAACAACTTTAATGTAACTAACTTGTTCAGCCTTTGCATCGCAAAATATTAGTGTGTCATCTGCATATAAAAGGTGACTTATCTGCAAATTGAGTCCTGACTGATTACTAATGTTGAAACCCTTTATCCAGTCCTTCTGATTGGCCGCTCTAATCATACTGTTAAGACCCTCCATAGCTAAAATAAAAAGGAATAGGGAGAGAGGGTCTCCCTGTCGTAAACCTCTCTCAGAAGGAAAAAAACCAGCAGGTTCTCCATTAACAAGTATGGAGAACCTGACAGTTTTGATGCAAAATCCTATCCATTTAAGCCATTTGTCTCAAACCCCATCTGCCTCAGTATATTAAGTAGAAACTCCCAATTGACATGATCATATGCCTTTTCTACATCAAGCTTGCACATGATTCCTGGGATCTCTCCTTTAATCCTCGAGTCTACACATTCACTTGCTATTAACGCGGCATCCATAATTTGTCTTCCTTGAATGAAGGCCATTTGGTGATTATTCACTAATTTGCTTATCACTTTCTTTAATCTCTCTGCCAACAGCTTGCCAAAAACCTTGTAAACTCCACTAATGAGACTGATGGGTCTGAAATCCCTAAGTTCCAAAGCTCCTGTCTTTTTTGGGATTAGAGCCACATAGGTGACGTTGAGACTCTTCTCTATTTCATGTCTTTCATCAAATTGTGTCACTGCATTCATGAAGTCTGCCTTCAGTATCTCCCAGAAGTTTTGGAAAAAACTCATCGGAAAGCCATCTGGTCCGGGGGCCTTATCACTAGTACATGCTTTTATGCAATTTAAAACTTCCTCTTCCTCAAATTGCCTCTGCAGCCATACATTTTCCTCTTGTGTAATGCTTTCTGCTCCCTGTACTTTAATTTCTGGCCTCCATTGTTCTGTTTCTCTGTAAAGATTTTGATAGTAACTGATTATGGTTCCTATAATTTCTTCTGAATCTGTTACTGTAACCCCTTCAACCATCAGCTTATCTTATCAATGGTGTTGAATCTTTTATGAGCTGTAGCCATCCTGTGAAAATACTTGGTATTTCTGTCTCCGTGTTTGAGCCAGTGTATTCTTTCGATCCCTCTCCCCTTTTTCTTTCTACACCTGTCGTTATCCTCTCCCTCTTTTTCTTTGAACACCCCCCCCCCCCTCTTCCTCTTCTTCTTCCCCACCCTTCCTCCTCTACACCTTCCACCTTTCCCTTCCCCGCTCCTCCTTCAACAAATCTGTCAAAACTGTTGCGGGTCAGAATCTCTCTCAAAATTCTGAAATGTTGTTTTTTTAAAAAAATTGTAGAATTATCAAATGTTCTCAGAGTTAATTGAGCATTCATGTTTTTTCTTAAATTTTGATATCGGAAACATTATGCACTCTTCAAATAAATTATAGATTTTAAGTTGTACTTCATGTGAAATTAGTTGGTTTTTGAGTCATTATGATTGAAGTCCATCCTGTGCACTGCTTCAGTATGTTGTAATGTTAAAGCAATTCACTCTTATTATACAAGATGTTGTCGTATCAGTTCATATTTTTTCAGTTGGTTGTGGTGGTATATGGTGGAGGTGGGCAGAGGGTGGTGGAAAAAGTTGGAGTTAGAATAGGTCACTTCCATAATGTGTTGCCTCTTCTTTTTTTTTTTTGAGAAGGTAACGATTTGTATTATAAACCAATACTTATGTAGTACTGAAAGCCCCTTTACAAAAACGTATGAAATTCTAGGAACAAAAACAGCAAGCCTAGCATGATTCTAATACTTTTCTTTTTTTTGAAATAGATGATTCTAGTACTTCAAGGATTGCTTCTGCATCTACAGGGGAACTCTTTGTACACCAAAAACATAACAAAATACAATCTGTTTTGATCATCTGTAGGGATCTATCCTCAAAGCTTCTAGCATTCCTTTCTCTCCAAATGGTCCACCAGATGCATGCTGGAATTGTCCTCCAATAATTTCTGTTCTTTGCCTCAATTCCTGCATCCTCCCATCTTGAGAGAGTGTCAACAATCGTGCTAGGCATTGGTTATCCAGATTTGTCTCCAGGCCAATTGAGGGTTAGAGGAGTCCTGATCATGACCTTGTAACCTGAGCTCACTTTGAATCTTCCTTTGTTGTGCTCTGTCCACCGTAGGCAGTCCTCCCCTTCCTTCAAACCTTGAAATGATTCCAACCTTTTAAAGAATTCAACTAATCTACAAACTTCCCATTCATTTAAATTCCTTCTGATAGTTAGATCCCAACCTTGGGGAGACCACATTTCAGCCACTGTTCTGTCTTTATGCAGTGCTAAGTCAAAGATGTTGGGGAAGATCTCTGACAAATTTTGATTACCAAGCCATCTATCTTTCCAGAATTGTGTCCTGACACCATTGTGTACTGTTATAGTAGTATGATTCCTTAGGAAAGGCCACCAGTTCCTAATTGATCTCCAAACAGTAACACCATAGGGATTGGTTGCTTCCTTGGTGACCCATGAATCCATCTCTCCGTACTTCACTTTAATCACCTTGTTCCACATTGAGTGTGGTTCATGAGCATATCTCCACAACCATTTCAGCTTTAGAGCCTTCCTTTGGTTCTTCAATTTTTTTATGCCTAATCCTCGTTTTTTTCCTGTGATCATAAATCTCCATTTTACCAGATGGTATCCCTTTCTTTTCTTGTTTCCTTGCCAGAAAAAATCCTTTCTTAGTTTATCCAATCTCTATACTACTCCTACTCCTGCAGGTATTGGAAACAAAGTTAGCATGTACGTAGGAAGGGCATCCAAGACTGCATTTATCAGAGTGAGCCTGCCCCTTTTGATAAATATTGTGCTTTCAATCTGACTAACTTCTTCTCACATCTCTCCAAGACAGAATTTTTTAATTTCTTTGTACTGTGATTTTGCTCCCAATGGCATCCCAGGTAGATAGCAGGTAGTGCTCCCACCTCGCCTTCTAGCACTGAGGCCAAGAGCTCCATATTGGAGACCATGTTTATGGGATATAAATGGATCTTTCCCCATTGATGTGAAGACCTGACATACCTTCAAAAAGCACCAGAATTACCCTAGGGTATCTTAGTTGTTCCTCATCTGCATCACAAAAAATCAAAGTGTCATCTGCATATTTGTGTAACCTCCAAACTCTTCTCATTGTTTGTGGACACTTCAAATCCCGCGATCCACCTATTTGTTTTAGCTGTCTTGATCATGTTATTAAGTCCCTCCATGGCACGAATAAAGAGGAATGAAGATAAAGGATCCCCTTGTCTGATTCCTCTTTGGGCTTCAAAAAGACCTTCGGGAGCACCGTTAATGAGGACAGAAAACTTTACTGTTGAGATGCAAAACCGTATCCATCTAATCCACTTTTCTCCAAATCCCATTTTCCTGAGTATATTGAGAAGGAACCCCCAGTTAACATGATCATAAGCTTTCTCAGTGTCCAGTTTGCATAGGATGCCTGGTTTCTTTTGACCCACTCTAGAGTCTATTGCTTCATTTGCTATTAAGACCGCATCCATGATTTTTCTTCCTTTGATGAAAGCCATCTGTTGGGAGTCTACCAGCTTGTACATCGCCCTTTTGATTCTCTCTGTTAAAACTTTAGACAAGTTGTCATAGAAACTGCCTATCAAGCTTATTGGTCTGAAGTCTTTAAGTTCCTTTGCTCCTTTCTTCTTTGGGGTCAAGGCAATATAGGTAGCATTGAAACTCTTCTCAAACATTTCCTGCTCATAGAAATAATGGAAGGCCGCCATGATGTCATGCTTAAGAATTTCCCAACATTTGATGAAAAAACCCATAGTGTAACTATCAGGTCCTGGGGCTTTATCAATTACACATAACTTCAAGCATTTATAAACTTCCTGCTCCTCAAATTTGGCCTGTAGTTGTGATCTTTCTTCCTCTGATATTGAAGGACAATTCACTAAATTTCCGTCAGGTCTCCATCTTTATGTTTCAGTATACATTTTCTCATAAAACTTGATAATTTCCTCATTACTCTGTTTGGTTCTGTGATGGTCTTTCCCTCTACTTCCAATTGGTCAATATGGTTGCTTCTTTTATGGGAATTTGCAGAATTATGGAAGAATTTTGTATTGTTATCTCCTTCCTTCAACCACAAAATTCTAGAACTTTGTCTCCAAGCACATTCCTCATTTTTTATCAGTTCTTCGTACTCCATAAAGATCTCTGCCTTCAAAGTAGCCTCTTCCTCTGTCAATGCTCTTTTGTTCAGCAAAGAGGGATTTTTTAGCCTTTGAAGCTGTCACAGGGCTGGAAGCTTACCTTGCGAGGAGTCACCTGTTTAGTGTTGATATTGATGGTAATATTGAAGAGTTGGCTGAAATTGTGATGTAACGTTTCTTGTTGTATATTTGGGACTTCCTCTGAGTGTAAAAAACAATGATCAAATGATGGTCAATGAGTTCTAGACATGTGCAAAGAAACTGATCCCCCGGGAAAATAGTATTTATCTTTAAGTGGAAGGCGCACTCTAATCAACATAAGAAAGAGGGGATTGATCAAAAATCTCATCCTTTTCCTTGAAGGCTGATGTGATTTGTTTCCAAGATTCTAAAATGGAGGGGGATATGAAGGAAATAGTAAGAGAGTTATGGGGGGTCAGATGGATCAGTTATACTCAACTGGAGGCAAGTGATATTAGGGGAGGGATTATCCTAAAGTGGGACAACAGAATTTGGGAAGGGGAGATCAGCAGTATAGGCTCTTACTCTGTAACCTGTTATCTACAGTGATTACAGGTAATAATCAGGATTTCTCTTGGTATCTTACTGGAGTATATGCATTAAATGACATAATGGAAAGGGAAGAGGCATGGTGGGAAATTGCATCAGTTAGGGTCTCTGATTTCAGGTCCATGGGTTGTCTCTAGAGATTTCAACACGGTTAGACATCCATCAGAAAAGAAGAATTGCAACAGAATTAAAAAATCAATGACAGACTTCTCCGAATTCATTGAAGACATGGAGTTGATAGACTTCGATTTAACATGTGGTCAATTTTCCTGGAAACAGGGGGATAGACAGGCAACTGCTGCTAGACTAGATAGATTCCTAGTTTCAGAAGGATGGAACACACATTTAGGACTATAAGACAACTTGTTATTCTTAGATTGACCTCAGATCACACAACGCAGATGCTACAATGTGGTGAGTATGAACTCGATAAATCTTATTTCAAGTTTGAGAATTGGTAGCTTTAAACTGAAGATTTTGGTGACATTGGTGACAGAGTGAAGAACCGGTGGGAGTCTTTCCACTGCACAGGAAGGCCCGACTATATCTTGGCTTTCAAACTGAAAGTTATGAAAGGAGAAATTGAAGGAATGGAGTAAAATAGTCAAGGGTAATATGGAATTATAGAAACAGAACATACCAAACCATTTAACATAATTAAAGGAGCCAAGAACAGAGGATTTTGACAGAAGAAGAAATAACCAAGAGGCTAACTTTATCACTGGAATTTGAAGATATCGATAGGCATGAGGAGACTGCTTGGAGGCAAAGATCCTGGGTACTATGGGGCTAAATTAAGGAGATAGAAATACCAATTTTTTCACAGGACAACTAATGCACACAGGAGAATAAATACCATCGGTAAACTAGTAGGAAGAGGAGAAACTTTGACAGACCCAATCAACATCAAGAAAGAAATAATCTCTTTCTTGAGTTCTCTACTCAGAGACAGAGGAATGGATACCACACTCTGCTAGGAGCCTGCAGGAACTGTCCCATGGTCAGTGCAAAAGACAAACTAATGTTGATGGCCCCCTTTGAACCACAACAGATTCTGGACTGCTCTAGGACCAGATGGTTATACTCTGGCTTCTTCCACCAATGTTGGGCAGTGATTAGTTCAGATGTAGTAGCTGTAGTACAAAACTTTTTATAATGTAGGTTTCTTTCAGAAGAGATATAGTGCTATATTTGTAGCTCAACTCCAAAGAAAGTGGGTGCTATTGAATTAACTGATTCCAGCCAATCAACTTGATTGGGAGTGTCTACAAGATCTTTTCCATACTCTCAGCAGAAAGCTTGAAAAAAGTAACCCACAACTTGGTGCCAACAGATGGCCTTCATCAAAGGAAGACAAATCATGGATGCTAGCTACTATGATGGCAATTGAATGTGTTGAAGGAATGCAGAGGAGCAATTTGCCAGATATCTTATGCACACTAGATATCCAAGAAAACTTTTGGCCATCTTAACTGGAACTACCGTCTTGAACTATTACAGAAGATGGGATTTGGATCCAAGTGGATAAGGTGGATCAAACATTAAACCGGCAGAGTCAAATTCTCAGTATTGGTCAACAGAGCCCCCTACTGGTTTTTTCTCTTCCTACATAGGCTTGAGACAAGGAGCTATAGAAGGCATAAGCAATATGATATAGACTGCAAAATTAAATGGATGGGTCAAAGGTTCCCAAGCAATTCCCAGTACAGTGAACGACTTACAAATATCCACCTGCGGTATACTGTTGACACCCTGGTTTTCTGTGAGGCTTCCAAAGAACAAATTCTATTATTGAGAGTGATTGTCATCCTTTCTGAATCCATATATGCTTACACATTATTTGGATAAAGAGCTACATTTATCGTGTCAATGAAATGGCTGATATTCAATCCTTGGCTGATGTTTTAGGAGAGACATGAACACTTCCTACTAAATACTGGGGTATGCCTCTTGGTGCAAAGAGAAAATATGTGAGATATGGAATGAGGTGTAGAAAAATGTGAAAGAAGACTAACCAACTGGAGAAGTCAATATATCTTTATGGGAGGAAGATTGACTTTGAACAACAACATGCTTGATGCTTTACCCACATATATGATGTCTATCTTTCCCTCCCCTATATATGTGATAGAAAAGATAGACGCCTTAAGGAGGAATTTCTTCTGGCTAGACAATGATGACAAGAAAAAATTCATCTTGGGTAACTTTGACAAAAAAACAAGAAGAAAGGGGGAATGGGAGTCAGGAACATGTTGATGCACAATAGACGTCTGATTATGATGTGGTTGTGGAGATTTGATATAGATGACAACCAGCTTTGGAAACAAGTTGCTAAAGCTAAATATGGAAAAGAGGGGTTATGGACAACAAAGGTAGTGACTACTTTCTATGGATGCAACATCTGGAAATCTAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTGAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTATCTTGTGGGCCCAATGATGGTTGACTTTTTTTTCAAACTAGTGTCACGTAAGCTATAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAAAAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGGTTGAGGGGGTACTTGTGCATTTTTCCGGAAATCTATCCGAAACCTTTGGCCGATTTTCCAACAAAGAATAGGCTTCAAAATTGGGAATGGAATGAAAAATTTCCTGTTGGAATGACGTTTGGATTAGAGAAAACACACCCAATCATCTCTTTCCAAAATTATACAGCTTTTGTCAACAAGCATCAATAGCTGACATGTGGACAGACATGGATTAAAGACTTATTGACCCTGGGAATATAAGAAATCAATGTATTTAGGGAACCGAAACTTATCATCTGCCAAACTCAAAAGAAATGAAAAACGGGCAAGTATTGAGTCTCAGATTTAGAAGAATTTTTGAATAATTGAGAGATGGAAAAAATTGCAGATTTCCTCCACATTCTCAGTTAAATGGTTTTTTAGAAGAGGTGGATAGCTTAGTTTGACATTGTCACAGCAAAAGGGAAGTTTTTGTAAAGTCTATATCTCACTAGCTCCAACAATCAAGTGGGTTGTTCACTATGGAAGATGAGCTGGTGGTGAAAATTCCTTACAATGTAAGCTTGTTTCACATGGCTTTTTACTACAAAAAAGGTTCTGACAAATGAAATACTTGAGCAAGAGAGGAATGCAACTATACTCAGATGTTATCTCTTTGTAATGAACAAGTAGATATAGTTAACCACCATTTTTTTTGCACTGTAAATGGACATATCGACTATGGAAACTTTTGATCAACTTGAGGAAAATTTAGTGGGTGATGCCAAGAAGAATAAAGGGAGTGCTAAACTTAAGGAACAGTGATGGCAATGCAACTAGCAGGGAGGAGATATAGAAAGATCGTCTCAGCTTTATTTGGTGGTCAGTTTTGACTAAGAGAAATCAGAGATGTTTTGAGGGAAAACATTGTGACATCCAGAAGATCGTGATAAATTGCCTACCCCTCTATTATTTTTGGTGTAAACAGAAGTTGTTCATACAAACTGAAGATATTTTGTATGTTCACAGTTTATAATAGTTAAGTTTTAACAGATAAGACCCTTATGTAATCAGCCTACTTTTTTGTCGGACTAACAATTTCGTGATGTAGTATTCCTGTTGATATTAATTTTTACTTTTATGAAAAATTTACCAACTCAAAAATATCATTTGAATGATCATGATGCAATACGAAGAGCATATATTCAAAAGTCTTTTCCAATTTCAAAATTACAAGTTTCTTCAATGATGAGCTTTTGAGTAACTATTTGGTATTTATAGAAAAAAGAACATTTTTAATATTTCCAGTGAGTTTATGATGGACACGTCTTAGAAAATGAGAACTCTGAGGAGAGGTGCAACAAACAACAACATACCCAGTGAAACTCCACAAGGTTTAAGGAGGGTAGAATGTATGCAAACCTTACCACTATCTCGTGGAGGTAACGATATTGTTTTCTGAGAGACCCTCGGCTCAAGTGCAACAAATCCCGGTATAAAGGAGACAATGAAGATCGAGGAGAATTTGGCTAATAATGAGGAAATGATGCAAAAGTTTACCAGAGAGATTAATCATGTGATAATCCAAACTCCATAAACAACACACTAGGGTAGACTATTAAGAAAAAAACAAACAATTATAAAAATAAAAATAAAACAAAAGAAGTACAATAATGCAACTAGTACCATTGCAAACACCAGCCACCCTATGCACGACAACATTACACTACCTACTAATTTTCTACCCTAATACGTATCCTCCACACCCTCTTATCTAGGATCATATGGTCGGTAGCTTGAAACTGCATTATATCATGTCTTTCATATCTCCCTAATACTTCTTCGGCCTACCTCTGCCTCTCTTCATTCCTTCTATAAACAACCTCTTGTACCTCCCCATTGGTGCATCTATGCATTTCCTCTTCACATGTCCAAACCATCTGAGTCTCGCTTCTCTCATTTATCTACCACTGAGGCCCATCCCACCTTATTTTGAATATCCTCATTTCTAACTTTATCACTACCTAGTATTATGGGTGGGCGTTCAGTTCTTTGGTTCGGTTTTATCAAATTTCACTTCGGTTTTTCGATTTTCTGTTTTAGAAAAGTGTGCACCATATACCAAACCAAAGTAATTTGGTTCCATTCGGTTTAGTTAGGTGTTTTTAAATTGGTTTTTCGGTTCGAATGAAAAATAAAATGAGGACAAAGTCAAAGTGTAAGATAATTAAAATTTAAAAATATGTTGAGGGATCATGTGTCTCTCATGGAACGCTTGTTGTGCTAACTAAAAGACTAATCATCTTTGTCAAGAACATTGTGCCTTCAACTATTTCTCTAGAAAAACAAGGACGAAGACGGGTTCCTTAACATAACATACATTGATAAAAATATGTTTTGGTTATTCTTGAAAACTAATATTTGAAGTTAACTATTAATTATACATTTGTTTTGTTTTTTTTAATTTGTTCATGAATGATTTAATTGTTAGTTGAATTTTTATTATTAATTTGTATTTTTTTCAATAAAAGTTCGGTTCTTCGGTGCACTGAAGTTCTAAGACCCTTACACCGAACTAAGGAACCGAACTTTTGAAAAAATAACACCGACACCGAATCGAAAATTGAAGAACTGAATTAGTTCGGTTCGATTTTTCAGTTTCCCGGTATTTATGCCCACCTGTACCTAGTATGGCCACACATCCACGGACCAAACATCCATCGCAACATTCTCATCTCTGCAACTTGCATCTCTTGGACATGGGAGTTCTTAAGTAGCCAACATTCAGTTCCATACAAAAATGTTGGTCGAACCACCTTGCTACACTACTTACCTTTGAGTTCCAGTGGTACCCTTTTATCACACAAGACTCTAGAGGCAAGCCTTCACTTCATCCATGTCACACCGATACGATGTGTGATATCATCGTCGATGTCCTTGCTCCCTTGACGTATAGATCCAAGATACTTGAATATATCTCACTTGGGGATATTTTGTGTGTCAAGCCTCACTTCCATGCTTACCTCATGCATCACATCATTGAATTTGCACTCCACATATTCTGTCTTGGTCCAGCTCAACCTCAGCCCTTTAGCCTCCAAAGTATGTCTCCACATCTCTAACTTAACATTAACTCCAAAGGTGTAGTAGTGTGCTTGAATTTATTTTTCTAATATATGGCATTGTTATATTAATTTATTCACTTCTTTAAATGTCGACGGTGCTTATGGAAAATCATGTGTAAGTCACTGGAAGATAACTCTAGGTTCTTACAAGTTGTCACATTTTACTGAGTGCTATATATTTGGAGTGTATTGTTAAGCTTAAAAAGTTCTATTGTAAGATTTCACAGCATGATATTAACATTATCTTTTGGCATTTTATAGAGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAA-GTTAAAGTTCTCCCACATCTCACTCTCAACTCTATGAATGACATTTTCTGACGGTTGATAATTATCCATCTGTACAGCTTTTCTCAAAATTAGGAATGTATGAAGCTGATTTGCTTGGTTTAGACTTGTGAATGTTCCATTCTGGTCTTGGAGCACGCTATACATCCTAAGGATGAGTGATAAATTAGGGATGTTAAATGATTTTAAACATTTTGAGACAATTTTTTATCTCGTAGGCAGTAGGAGGAACTTGAAAAAGATTCGAAGAGAAAAAAGCAAGAATTTCTTCATTTATCTGCAAATGCTCTGCTATGCCATATCTGCTGCATGGTGCTAATATGAACATTTGTCATTTAGAAGTCCAAGCGAAGTATTCGAATTAGAGAGTCAGTTAAACAAAATACCATTGCAAGTAGCATTTTTGACAGTTTATCATATGTCTATCAAATCAAGGAGAAAATATCCCGAATGCTCAAATTTTAGTTACCAAGAAAAGAAAAAAAATCTGGGTACATAAAAAAGAAAAAGCTCCAAATTTTTTAATATATCTTGTTGCTTGGTTTGAAAATGGTGTTGCACTGATGTTTTATATTCCTTCACATGTTCGACTAATTCTAGGCAGTTCTTTTTTCTTTTCATTTAGTTATGTAGTTTGTAATTTCTTTTTCTTAACTAGTCTATTGATTGTTGTACAGAGAGATACTTAGGCTTCTTCCTACTACAAAATAGATGATCAACTGCTGAAAAAATTCTCTTATTTTATCATTCAATTTCAGGTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAGGTACTACGTCGTACATTCACCTGTCAACCTGAACAATGTTGTTTAACTATAACGTAACACGGTAACATTATAGCTACGCAGTTAAGGCTGTATATTAAAATTTGTTGTACCTGCACAGGATGATCAGTCTATTGGGTAGATGTAAGAAAATTTTAGAATGTCCTTGGAACACTGATGATTTCTCTAGGTCAGAGAGAGTTCCATAATTGATTTTGTTCCTGTAAGCTTCCTGATTTATTTTCTTGAACAAGGTTGGCTGCAAAAGATCATGTCACGAATATGATATTATTATTCTACACTGCCAGATGGAACACCTTCAAATTGATGACAAGAGGAGCATGCTTAGTATGTACATCAGTAAATAAAAGGACCAATTTTAACCAAAATGCAAATTGGACCATCATTGCATGTCAACTTTGTTTTTTTAGTCACACATGATGCTATTTGTGTTTTTAATCTTTCACGCAGTGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAGGTCATACTTCCATCATTCTGCCTCAGTTATAATTCCTATATGAATTCCCTACATCCTTTCTTCTCTATCCAAATAATAAATAGCGTCTTTCAACCTCAGTGATTCTTTATATCTCAATTATCCCTGCAATAGTTATCTAGTTTAATCTGAACGAGTGGCGGCTTTTGCCTAGTAGTTATTTTTTACCTTTTCTTTCTTCAGTCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAGGAAGAAGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGTAAAAAATTACAAAAGCCTCTTTCTTGATCAGGTCAATGTTTTTGCATTGCTCATTAGTTGATGGG</genome_strand>
        <mrna_strand>GAAACAGCTTGAT-CACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCACGTGCGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-CATTGGAAAGTTCCTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACGGGATTCGCTATCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAGATC................................................................CTCTCCCCTAAACCCTTTGGTTAAATCGCTG---GATTGGGTAAACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATCTTTGGAGGTTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATCAGCTTTCAGTGATGTTGATCAGTGTCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGTTAGTGCCTTAAATGCATTGGACAG.........................................................................................................................................................................................................TCTTCTTAAAACCGTCCCAGCTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAGGAAGACGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGT---AAA-TACGAAAGCCTCTTTCTTGATCAGGTAAATG-TTTTGTATTGCTCATGAGTTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286854" ref_strand="+" ref_description="SGN-E286854 [cLES-14-N13]">
      <seq>ctgatggtggcaatggtaaattagctttcagtgatgttgatgagtgtctgagtgcattggaaggacttgactcgttgcttttgcgtgcatcaagaaaggatccaggggcctcaattgactcaatgaaggcacaaattgctactgccttaaatgcattggacagtcttcttaaaactgtcccaactgatgtgcttgaaaagggaaagtctgtagctgattcatatttttttgctggtgaggaagaagtagcacctgagagactggaccctgagctgaagcaactggaatctatactgtaaaaaattacaaaagcctctttcttgatcaggtcaatgtttttgcattgctcattagttgatgggcagagagagtgttactctttactctcttcattgatgcaggtcattcaaagtatttaagtaattagtgttgttttatctctctactgaatcgtttcatatatgcatatttactaatgtaaaaatcacaccatatgtacatttaaggctatatatatcgagttataaacataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="61238" stop="63038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61538" g_stop="61589" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61590" i_stop="62057" i_length="468">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62058" g_stop="62168" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="163" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62370" g_stop="62746" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="540" r_length="377" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E286854" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61538" e_stop="61589"/>
          <exon e_start="62058" e_stop="62168"/>
          <exon e_start="62370" e_stop="62746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAGGTACTACGTCGTACATTCACCTGTCAACCTGAACAATGTTGTTTAACTATAACGTAACACGGTAACATTATAGCTACGCAGTTAAGGCTGTATATTAAAATTTGTTGTACCTGCACAGGATGATCAGTCTATTGGGTAGATGTAAGAAAATTTTAGAATGTCCTTGGAACACTGATGATTTCTCTAGGTCAGAGAGAGTTCCATAATTGATTTTGTTCCTGTAAGCTTCCTGATTTATTTTCTTGAACAAGGTTGGCTGCAAAAGATCATGTCACGAATATGATATTATTATTCTACACTGCCAGATGGAACACCTTCAAATTGATGACAAGAGGAGCATGCTTAGTATGTACATCAGTAAATAAAAGGACCAATTTTAACCAAAATGCAAATTGGACCATCATTGCATGTCAACTTTGTTTTTTTAGTCACACATGATGCTATTTGTGTTTTTAATCTTTCACGCAGTGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAGGTCATACTTCCATCATTCTGCCTCAGTTATAATTCCTATATGAATTCCCTACATCCTTTCTTCTCTATCCAAATAATAAATAGCGTCTTTCAACCTCAGTGATTCTTTATATCTCAATTATCCCTGCAATAGTTATCTAGTTTAATCTGAACGAGTGGCGGCTTTTGCCTAGTAGTTATTTTTTACCTTTTCTTTCTTCAGTCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAGGAAGAAGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGTAAAAAATTACAAAAGCCTCTTTCTTGATCAGGTCAATGTTTTTGCATTGCTCATTAGTTGATGGGCAGAGAGAGTGTTACTCTTTACTCTCTTCATTGATGCAGGTCATTCAAAGTATTTAAGTAATTAGTGTTGTTTTATCTCTCTACTGAATCGTTTCATATATGCATATTTACTAATGTAAAAATCACACCATATGTACATTTAAGGCTATATATATCGAGTTATAAACATACTTTTAAA</genome_strand>
        <mrna_strand>CTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAG.........................................................................................................................................................................................................TCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAGGAAGAAGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGTAAAAAATTACAAAAGCCTCTTTCTTGATCAGGTCAATGTTTTTGCATTGCTCATTAGTTGATGGGCAGAGAGAGTGTTACTCTTTACTCTCTTCATTGATGCAGGTCATTCAAAGTATTTAAGTAATTAGTGTTGTTTTATCTCTCTACTGAATCGTTTCATATATGCATATTTACTAATGTAAAAATCACACCATATGTACATTTAAGGCTATATATATCGAGTTATAAACATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216056" ref_strand="+" ref_description="SGN-E216056 [cLEL-13-P3](-)">
      <seq>ggaaagtctgtagctgattcatatttttttgctggtgaggaaaaagtagcacctgagagactggaccctgagctgaagcaactggaatctatactgtaaaaaattacaaaagcctctttcttgatcaggtcaatgtttttgcattgctcattagttgatgggcagagagagtgttactctttactctcttcattgatgcaggtcattcaaagtatttaagtaattagtgttgttttatctctctacttgaatcgtttcatatatgcatatttactaatgtaaaaatcacaccatatgtacatttaaggctatatatatcgagttataagcatacttttaagagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="62107" stop="63049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62407" g_stop="62746" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="355"/>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E216056" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62407" e_stop="62746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAGGAAGAAGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGTAAAAAATTACAAAAGCCTCTTTCTTGATCAGGTCAATGTTTTTGCATTGCTCATTAGTTGATGGGCAGAGAGAGTGTTACTCTTTACTCTCTTCATTGATGCAGGTCATTCAAAGTATTTAAGTAATTAGTGTTGTTTTATCTCTCTAC-TGAATCGTTTCATATATGCATATTTACTAATGTAAAAATCACACCATATGTACATTTAAGGCTATATATATCGAGTTATAAACATACTTTTAAA</genome_strand>
        <mrna_strand>GGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAGGAAAAAGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGTAAAAAATTACAAAAGCCTCTTTCTTGATCAGGTCAATGTTTTTGCATTGCTCATTAGTTGATGGGCAGAGAGAGTGTTACTCTTTACTCTCTTCATTGATGCAGGTCATTCAAAGTATTTAAGTAATTAGTGTTGTTTTATCTCTCTACTTGAATCGTTTCATATATGCATATTTACTAATGTAAAAATCACACCATATGTACATTTAAGGCTATATATATCGAGTTATAAGCATACTTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338172" ref_strand="-" ref_description="SGN-E338172 [cTOE-13-B4]">
      <seq>ctatactgtaaaaaattacaaaagcctctttcttgatcaggtcaatgtttttgcattgctcattagttgatgggcagagagagtgttactctttactctcttcattgatgcaggtcattcaaagtatttaagtaattagtgttgttttatctctctactgaatcgtttcatatatgcatatttactaatgtaaaaatcacaccatatgtacatttaaggctatatatatcgagttataaacataaaaaaaaaaaaaaaaaactcgagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="62195" stop="63038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62495" g_stop="62746" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E338172" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338172" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62495" e_stop="62746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACTGTAAAAAATTACAAAAGCCTCTTTCTTGATCAGGTCAATGTTTTTGCATTGCTCATTAGTTGATGGGCAGAGAGAGTGTTACTCTTTACTCTCTTCATTGATGCAGGTCATTCAAAGTATTTAAGTAATTAGTGTTGTTTTATCTCTCTACTGAATCGTTTCATATATGCATATTTACTAATGTAAAAATCACACCATATGTACATTTAAGGCTATATATATCGAGTTATAAACATACTTTTAAA</genome_strand>
        <mrna_strand>CTATACTGTAAAAAATTACAAAAGCCTCTTTCTTGATCAGGTCAATGTTTTTGCATTGCTCATTAGTTGATGGGCAGAGAGAGTGTTACTCTTTACTCTCTTCATTGATGCAGGTCATTCAAAGTATTTAAGTAATTAGTGTTGTTTTATCTCTCTACTGAATCGTTTCATATATGCATATTTACTAATGTAAAAATCACACCATATGTACATTTAAGGCTATATATATCGAGTTATAAACATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443921" ref_strand="-" ref_description="SGN-E443921 [cSTA-40-P11]">
      <seq>tgtcatcattaaacctttccctgtctgcgaatttgaaggaggttgatatagcttgttacaacttgtgcgttctcaatttgagcaattgctgttcattggaatcattgcaactggaatgtccaagattaagtagcctcttttttcagtcctgcaacattgatgaggaagctgttgaagctgccgtatcacgatgtacgatgcttgagacgcttgacgttcgtttttgtcccaagatttgtccactgaacatgacgaggttgcgggttgcatgtcccagtttgaaacgcatcttcagcagcctagtcccatcatgaggcaaaatgaaatatttgatatgtttgtgtaggctggctagggacataatatttgactacagaggttcatattttatgtatagttagctatttatgttgctgtgattggtgaaacgtacagcgagcttcatacatgtaacaccttaatgttttggtgttggctttcatattttatgatttggttagcgcacttaatgcaactttattcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="65923" stop="63561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65623" g_stop="65542" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65541" i_stop="65445" i_length="97">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65444" g_stop="65381" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="146" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65380" i_stop="64390" i_length="991">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64389" g_stop="64303" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="233" r_length="87" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64302" i_stop="64201" i_length="102">
            <donor d_prob="0.778" d_score="0.94"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64200" g_stop="63982" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="449" r_length="216" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63981" i_stop="63921" i_length="61">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63920" g_stop="63841" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="526" r_length="77" r_score="0.863"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E443921" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443921" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65623" e_stop="65542"/>
          <exon e_start="65444" e_stop="65381"/>
          <exon e_start="64389" e_stop="64303"/>
          <exon e_start="64200" e_stop="63982"/>
          <exon e_start="63920" e_stop="63841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATCATTAAACCTTTCCCTGTCTGGGAATTTGAAGGAGGTTGATATAGCTTGTTACAACTTGTGCGTTCTCAATTTGAGGTATGTTCTTTAGCAATATGATTTCGTAGGTTAATGTTGTATCAATGACTTTGTTTTCATGATCATAGTTGTTAATTAATTATATTCTCTTGTTCAGCAATTGCTGTTCATTGGAATCATTGCAACTGGAATGTCCAAGATTAAGTAGCCTCTTTCTTCAGGTATTCTTGTATCTTCAAGGCACTTTCTTTGCCCGCTTTTTAATTCTTGTAGTGGCAGCTTTGCTGCAAAAGTGTTCTTTCTAGTTGTTTTTTATCATTTCGCTTGTGCTTATTTTCCCCTGTTGAGGTAGTAATAGTTTTTTAACTTGGCACGAAGGATATGCAAACTGTACAACCATTACAAATGTCAGTCCCCTTCCCACCTTGTAGGGACTTTATGAGTTCTATAAATGATTCAACTTCATTTTCAATTACCTTTTTACACAAAAGACTCCTCCATTCAGGATAGGAGGATGCTCGTTGGTCTGTTTTACAAGACATTCTCGCCTGCCTCTGGTTCAGTAGGTTGGTATGGAGAACATGCATACCCTTAAGCTTGATATTCTGTAGAGAGAACATGACTAATCAAGTCACTAATGGGATTGTATTGTAAGATCTAATAGCTAGCTGCATATTGTCTTAGGAGTACTCAAATTAACACAGTGGTCTACTAAAATCCTAATACTCTTCATGGTCTTCCTAGGCATTCATGTGGACAGATAATAAACATTTTCCAAATTTGGAAGTGTTAGAAGTCCTTAGGGATGCAATGTAGTTTGGGGGCATCGTACCTGTATTTTGGAGCATGATGTGCTTGGGCTAAAATTACTGAAAGGAGAATTTGAATTCTTAACTGGTGCTTATTTGCTGAATATTGCGATAACTGAGCTTTTATTTTTTTTTCTTTAGAAGTTTTTGCTTTCTCTGGGCTGTATTTCCGTTATTGCTTCTATCATTACACGTCTCAGGCTTACCTTAAAGGCATATTACTTTCTAGTGTAGAGCTTGTGAAATCGATTGCCTTTCTTTTTCTTGTCTCGTTAAAAACTACTTTGATGAACTCCCTTAAAAAATTGTTGGCACACCCATAAGGTGCTTGTGCAATTGAAATACTTGCGACACAATTGTGATGTGGAGTTATTCCCATACTCTTGCTTTTGTTGTCCTACAGTCCTGCAACGTTGATGAGGAATCAGTTGAAGCTGCTGTGTCACGATGTATGATGCTTGAGACGCTTGACGTTCGCTTTTGTCCCAAGGTCAGGAGTACTTTTGATGTTAAGAAAATGCCCTGTATTGATTTTTGTATTGATACAAGAGCTCATCTGAATTTGCTGATAATCCTTTTTTCCACTTAACAGATTTGTCCATTGAACATGACGAGGTTGCGGGTTGCATGTCCCAGTTTGAAACGCATCTTCAGCAGCCTAGTCCCATCGTGAGGCAAAATGAAATATTTGATAGGTTTGTGTAGGCTGGCTAGGGACGGACATATTTGACTAGAGAGGTTCATATTTTATGTATAGTTTAGCTAGTTATGTTGCTGTGATTGGTGAAAACATACAGCGAGCTTCATACATGTAACACCTTAAACTTAATATTTTAACTATTTATGTTGTGATTGGTGAAACATACAGCGAGCGTACACCTTAATATTTTGGTGTTGGCTTTTACATTTTATGATTCGGTTAGTGCACTACTTAATGCAACTTTATTCAGAT</genome_strand>
        <mrna_strand>TGTCATCATTAAACCTTTCCCTGTCTGCGAATTTGAAGGAGGTTGATATAGCTTGTTACAACTTGTGCGTTCTCAATTTGAG.................................................................................................CAATTGCTGTTCATTGGAATCATTGCAACTGGAATGTCCAAGATTAAGTAGCCTCTTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCAACATTGATGAGGAAGCTGTTGAAGCTGCCGTATCACGATGTACGATGCTTGAGACGCTTGACGTTCGTTTTTGTCCCAAG......................................................................................................ATTTGTCCACTGAACATGACGAGGTTGCGGGTTGCATGTCCCAGTTTGAAACGCATCTTCAGCAGCCTAGTCCCATCATGAGGCAAAATGAAATATTTGATATGTTTGTGTAGGCTGGCTAGGGACATA-ATATTTGACTACAGAGGTTCATATTTTATGTATAG-TTAGCTATTTATGTTGCTGTGATTGGTG-AAACGTACAGCGAGCTTCATACAT.............................................................GTAACACCTTAATGTTTTGGTGTTGGCTTTCATATTTTATGATTTGGTTA--GCGC-ACTTAATGCAACTTTATTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379056" ref_strand="+" ref_description="SGN-E379056 [TUS-3-O12](-)">
      <seq>ttgcttgcttgctgcacacatttgagtcatgtcagctgaatggatgtatttaatatgcatgatttaaattggggattttctggagatcaactgtcacaaatacccagtgttagtatacctcatgtatcttccctgggagaacagcagttgtcaaatgaacaaccaaagcgtttgctagagaaccttaactgtgtaggctgcccaaatataaaaaaggtgcttattccaatggcacaaggtttccttttgtcatcattaaacctttccctgtctgggaatttgaaggaggttgatatagcttgttacaacttgtgcgttctcaatttgagcaattgctgttcattggaatcattgcaactggaatgtccaagattaagtagcctctttcttcagtcctgcaacgttgatgaggaatcagttgaagctgctgtgtcacgatgtatgatgcttgagacgcttgacgttcgcttttgtcccaagatttgtccattgaacatgacgaggttgcgggttgcatgtcccagtttgaaacgcatcttcagcagcctagtcccatcgtgaggcaaaatgaaatatttgataggtttgtgtaggctggctagggacggacatatttgactagagaggttcatattttatgtatagtttagctagttatgttgctgtgattggtgaaaacatacagcgagcttcatacatgtaacaccttaaacttagatattttaactatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="66170" stop="63648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65870" g_stop="65542" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65541" i_stop="65445" i_length="97">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65444" g_stop="65381" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="393" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65380" i_stop="64390" i_length="991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64389" g_stop="64303" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="480" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64302" i_stop="64201" i_length="102">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64200" g_stop="63948" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="734" r_length="254" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E379056" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65870" e_stop="65542"/>
          <exon e_start="65444" e_stop="65381"/>
          <exon e_start="64389" e_stop="64303"/>
          <exon e_start="64200" e_stop="63948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTGCTTGCTGCACACATTTGAGTCATGTCAGCTTGAATGGATGTA-TTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAGAACAGCAGTTGTCAAATGAACAACCAAAGCGTTTGCTAGAGAACCTTAACTGTGTAGGCTGCCCAAATATAAAAAAGGTGCTTATTCCAATGGCACAAGGTTTCCTTTTGTCATCATTAAACCTTTCCCTGTCTGGGAATTTGAAGGAGGTTGATATAGCTTGTTACAACTTGTGCGTTCTCAATTTGAGGTATGTTCTTTAGCAATATGATTTCGTAGGTTAATGTTGTATCAATGACTTTGTTTTCATGATCATAGTTGTTAATTAATTATATTCTCTTGTTCAGCAATTGCTGTTCATTGGAATCATTGCAACTGGAATGTCCAAGATTAAGTAGCCTCTTTCTTCAGGTATTCTTGTATCTTCAAGGCACTTTCTTTGCCCGCTTTTTAATTCTTGTAGTGGCAGCTTTGCTGCAAAAGTGTTCTTTCTAGTTGTTTTTTATCATTTCGCTTGTGCTTATTTTCCCCTGTTGAGGTAGTAATAGTTTTTTAACTTGGCACGAAGGATATGCAAACTGTACAACCATTACAAATGTCAGTCCCCTTCCCACCTTGTAGGGACTTTATGAGTTCTATAAATGATTCAACTTCATTTTCAATTACCTTTTTACACAAAAGACTCCTCCATTCAGGATAGGAGGATGCTCGTTGGTCTGTTTTACAAGACATTCTCGCCTGCCTCTGGTTCAGTAGGTTGGTATGGAGAACATGCATACCCTTAAGCTTGATATTCTGTAGAGAGAACATGACTAATCAAGTCACTAATGGGATTGTATTGTAAGATCTAATAGCTAGCTGCATATTGTCTTAGGAGTACTCAAATTAACACAGTGGTCTACTAAAATCCTAATACTCTTCATGGTCTTCCTAGGCATTCATGTGGACAGATAATAAACATTTTCCAAATTTGGAAGTGTTAGAAGTCCTTAGGGATGCAATGTAGTTTGGGGGCATCGTACCTGTATTTTGGAGCATGATGTGCTTGGGCTAAAATTACTGAAAGGAGAATTTGAATTCTTAACTGGTGCTTATTTGCTGAATATTGCGATAACTGAGCTTTTATTTTTTTTTCTTTAGAAGTTTTTGCTTTCTCTGGGCTGTATTTCCGTTATTGCTTCTATCATTACACGTCTCAGGCTTACCTTAAAGGCATATTACTTTCTAGTGTAGAGCTTGTGAAATCGATTGCCTTTCTTTTTCTTGTCTCGTTAAAAACTACTTTGATGAACTCCCTTAAAAAATTGTTGGCACACCCATAAGGTGCTTGTGCAATTGAAATACTTGCGACACAATTGTGATGTGGAGTTATTCCCATACTCTTGCTTTTGTTGTCCTACAGTCCTGCAACGTTGATGAGGAATCAGTTGAAGCTGCTGTGTCACGATGTATGATGCTTGAGACGCTTGACGTTCGCTTTTGTCCCAAGGTCAGGAGTACTTTTGATGTTAAGAAAATGCCCTGTATTGATTTTTGTATTGATACAAGAGCTCATCTGAATTTGCTGATAATCCTTTTTTCCACTTAACAGATTTGTCCATTGAACATGACGAGGTTGCGGGTTGCATGTCCCAGTTTGAAACGCATCTTCAGCAGCCTAGTCCCATCGTGAGGCAAAATGAAATATTTGATAGGTTTGTGTAGGCTGGCTAGGGACGGACATATTTGACTAGAGAGGTTCATATTTTATGTATAGTTTAGCTAGTTATGTTGCTGTGATTGGTGAAAACATACAGCGAGCTTCATACATGTAACACCTTAAACTTA-ATATTTTAACTATTTAT</genome_strand>
        <mrna_strand>TTGCTTGCTTGCTGCACACATTTGAGTCATGTCAGC-TGAATGGATGTATTTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAGAACAGCAGTTGTCAAATGAACAACCAAAGCGTTTGCTAGAGAACCTTAACTGTGTAGGCTGCCCAAATATAAAAAAGGTGCTTATTCCAATGGCACAAGGTTTCCTTTTGTCATCATTAAACCTTTCCCTGTCTGGGAATTTGAAGGAGGTTGATATAGCTTGTTACAACTTGTGCGTTCTCAATTTGAG.................................................................................................CAATTGCTGTTCATTGGAATCATTGCAACTGGAATGTCCAAGATTAAGTAGCCTCTTTCTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCAACGTTGATGAGGAATCAGTTGAAGCTGCTGTGTCACGATGTATGATGCTTGAGACGCTTGACGTTCGCTTTTGTCCCAAG......................................................................................................ATTTGTCCATTGAACATGACGAGGTTGCGGGTTGCATGTCCCAGTTTGAAACGCATCTTCAGCAGCCTAGTCCCATCGTGAGGCAAAATGAAATATTTGATAGGTTTGTGTAGGCTGGCTAGGGACGGACATATTTGACTAGAGAGGTTCATATTTTATGTATAGTTTAGCTAGTTATGTTGCTGTGATTGGTGAAAACATACAGCGAGCTTCATACATGTAACACCTTAAACTTAGATATTTTAACTATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241598" ref_strand="+" ref_description="SGN-E241598 [cLED-36-I23]">
      <seq>cagcttgaatggatgtattaatatgcatgatttaaattggggattttctggagatcaactgtcacaaatacccagtgttagtatacctcatgtatcttccctgggagaacagcagttgtcaaatgaacaaccaaagcgtttgctagagaaccttaactgtgtaggctgcccaaatataaaaaaggtgcttattccaatggcacaaggtttccttttgtcatcattaaacctttccctgtctgggaatttgaaggaggttgatatagcttgttacaacttgtgcgttctcaatttgagcaattgctgttcattggaatcattgcaactggaatgtccaagattaagtagcctctttcttcagtcctgcaacgttgatgaggaatcagttgaagctgctgtgtcacgatgtatgatgcttgagacgcttgacgttcgcttttgtcccaagatttgtccattgaacatgacgaggttgcgggttgcatgtcccagtttgaaacgcatcttcagcagcctagtcccatcgtgaggcaaaatgaaatatttgataggtttgtgtaggctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="66138" stop="63782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65838" g_stop="65542" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65541" i_stop="65445" i_length="97">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65444" g_stop="65381" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="361" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65380" i_stop="64390" i_length="991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64389" g_stop="64303" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="448" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64302" i_stop="64201" i_length="102">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64200" g_stop="64082" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="567" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E241598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65838" e_stop="65542"/>
          <exon e_start="65444" e_stop="65381"/>
          <exon e_start="64389" e_stop="64303"/>
          <exon e_start="64200" e_stop="64082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAGAACAGCAGTTGTCAAATGAACAACCAAAGCGTTTGCTAGAGAACCTTAACTGTGTAGGCTGCCCAAATATAAAAAAGGTGCTTATTCCAATGGCACAAGGTTTCCTTTTGTCATCATTAAACCTTTCCCTGTCTGGGAATTTGAAGGAGGTTGATATAGCTTGTTACAACTTGTGCGTTCTCAATTTGAGGTATGTTCTTTAGCAATATGATTTCGTAGGTTAATGTTGTATCAATGACTTTGTTTTCATGATCATAGTTGTTAATTAATTATATTCTCTTGTTCAGCAATTGCTGTTCATTGGAATCATTGCAACTGGAATGTCCAAGATTAAGTAGCCTCTTTCTTCAGGTATTCTTGTATCTTCAAGGCACTTTCTTTGCCCGCTTTTTAATTCTTGTAGTGGCAGCTTTGCTGCAAAAGTGTTCTTTCTAGTTGTTTTTTATCATTTCGCTTGTGCTTATTTTCCCCTGTTGAGGTAGTAATAGTTTTTTAACTTGGCACGAAGGATATGCAAACTGTACAACCATTACAAATGTCAGTCCCCTTCCCACCTTGTAGGGACTTTATGAGTTCTATAAATGATTCAACTTCATTTTCAATTACCTTTTTACACAAAAGACTCCTCCATTCAGGATAGGAGGATGCTCGTTGGTCTGTTTTACAAGACATTCTCGCCTGCCTCTGGTTCAGTAGGTTGGTATGGAGAACATGCATACCCTTAAGCTTGATATTCTGTAGAGAGAACATGACTAATCAAGTCACTAATGGGATTGTATTGTAAGATCTAATAGCTAGCTGCATATTGTCTTAGGAGTACTCAAATTAACACAGTGGTCTACTAAAATCCTAATACTCTTCATGGTCTTCCTAGGCATTCATGTGGACAGATAATAAACATTTTCCAAATTTGGAAGTGTTAGAAGTCCTTAGGGATGCAATGTAGTTTGGGGGCATCGTACCTGTATTTTGGAGCATGATGTGCTTGGGCTAAAATTACTGAAAGGAGAATTTGAATTCTTAACTGGTGCTTATTTGCTGAATATTGCGATAACTGAGCTTTTATTTTTTTTTCTTTAGAAGTTTTTGCTTTCTCTGGGCTGTATTTCCGTTATTGCTTCTATCATTACACGTCTCAGGCTTACCTTAAAGGCATATTACTTTCTAGTGTAGAGCTTGTGAAATCGATTGCCTTTCTTTTTCTTGTCTCGTTAAAAACTACTTTGATGAACTCCCTTAAAAAATTGTTGGCACACCCATAAGGTGCTTGTGCAATTGAAATACTTGCGACACAATTGTGATGTGGAGTTATTCCCATACTCTTGCTTTTGTTGTCCTACAGTCCTGCAACGTTGATGAGGAATCAGTTGAAGCTGCTGTGTCACGATGTATGATGCTTGAGACGCTTGACGTTCGCTTTTGTCCCAAGGTCAGGAGTACTTTTGATGTTAAGAAAATGCCCTGTATTGATTTTTGTATTGATACAAGAGCTCATCTGAATTTGCTGATAATCCTTTTTTCCACTTAACAGATTTGTCCATTGAACATGACGAGGTTGCGGGTTGCATGTCCCAGTTTGAAACGCATCTTCAGCAGCCTAGTCCCATCGTGAGGCAAAATGAAATATTTGATAGGTTTGTGTAGGCTGGC</genome_strand>
        <mrna_strand>CAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAGAACAGCAGTTGTCAAATGAACAACCAAAGCGTTTGCTAGAGAACCTTAACTGTGTAGGCTGCCCAAATATAAAAAAGGTGCTTATTCCAATGGCACAAGGTTTCCTTTTGTCATCATTAAACCTTTCCCTGTCTGGGAATTTGAAGGAGGTTGATATAGCTTGTTACAACTTGTGCGTTCTCAATTTGAG.................................................................................................CAATTGCTGTTCATTGGAATCATTGCAACTGGAATGTCCAAGATTAAGTAGCCTCTTTCTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCAACGTTGATGAGGAATCAGTTGAAGCTGCTGTGTCACGATGTATGATGCTTGAGACGCTTGACGTTCGCTTTTGTCCCAAG......................................................................................................ATTTGTCCATTGAACATGACGAGGTTGCGGGTTGCATGTCCCAGTTTGAAACGCATCTTCAGCAGCCTAGTCCCATCGTGAGGCAAAATGAAATATTTGATAGGTTTGTGTAGGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233555" ref_strand="+" ref_description="SGN-E233555 [cLED-9-B11]">
      <seq>cagcttgaatggatgtattaatatgcatgatttaaattggggattttctggagatcaactgtcacaaatacccagtgttagtatacctcatgtatcttccctgggagaacagcagttgtcaaatgaacaaccaaagcgtttgctagagaaccttaactgtgtaggctgcccaaatataaaaaaggtgcttattccaatggcacaaggtttccttttgtcatcattaaacctttccctgtctgggaatttgaaggaggttgatatagcttgttacaacttgtgcgttctcaatttgagcaattgctgttcattggaatcattgcaactggaatgtccaagattaagtagcctctttcttcagtcctgcaacgtcgatgaggaatcagttgaagctgctgtgtcactatgtatgatgcttgagacgcttgacgttcgcttttgtcccaagatttgtccattgaacatgacgaggttgcgggttgcatgtcccagtttgaaacgcatctttagcagcctagtaccatcgtgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="66138" stop="63817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65838" g_stop="65542" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65541" i_stop="65445" i_length="97">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65444" g_stop="65381" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="361" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65380" i_stop="64390" i_length="991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64389" g_stop="64303" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="448" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64302" i_stop="64201" i_length="102">
            <donor d_prob="0.778" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64200" g_stop="64117" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="532" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E233555" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65838" e_stop="65542"/>
          <exon e_start="65444" e_stop="65381"/>
          <exon e_start="64389" e_stop="64303"/>
          <exon e_start="64200" e_stop="64117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAGAACAGCAGTTGTCAAATGAACAACCAAAGCGTTTGCTAGAGAACCTTAACTGTGTAGGCTGCCCAAATATAAAAAAGGTGCTTATTCCAATGGCACAAGGTTTCCTTTTGTCATCATTAAACCTTTCCCTGTCTGGGAATTTGAAGGAGGTTGATATAGCTTGTTACAACTTGTGCGTTCTCAATTTGAGGTATGTTCTTTAGCAATATGATTTCGTAGGTTAATGTTGTATCAATGACTTTGTTTTCATGATCATAGTTGTTAATTAATTATATTCTCTTGTTCAGCAATTGCTGTTCATTGGAATCATTGCAACTGGAATGTCCAAGATTAAGTAGCCTCTTTCTTCAGGTATTCTTGTATCTTCAAGGCACTTTCTTTGCCCGCTTTTTAATTCTTGTAGTGGCAGCTTTGCTGCAAAAGTGTTCTTTCTAGTTGTTTTTTATCATTTCGCTTGTGCTTATTTTCCCCTGTTGAGGTAGTAATAGTTTTTTAACTTGGCACGAAGGATATGCAAACTGTACAACCATTACAAATGTCAGTCCCCTTCCCACCTTGTAGGGACTTTATGAGTTCTATAAATGATTCAACTTCATTTTCAATTACCTTTTTACACAAAAGACTCCTCCATTCAGGATAGGAGGATGCTCGTTGGTCTGTTTTACAAGACATTCTCGCCTGCCTCTGGTTCAGTAGGTTGGTATGGAGAACATGCATACCCTTAAGCTTGATATTCTGTAGAGAGAACATGACTAATCAAGTCACTAATGGGATTGTATTGTAAGATCTAATAGCTAGCTGCATATTGTCTTAGGAGTACTCAAATTAACACAGTGGTCTACTAAAATCCTAATACTCTTCATGGTCTTCCTAGGCATTCATGTGGACAGATAATAAACATTTTCCAAATTTGGAAGTGTTAGAAGTCCTTAGGGATGCAATGTAGTTTGGGGGCATCGTACCTGTATTTTGGAGCATGATGTGCTTGGGCTAAAATTACTGAAAGGAGAATTTGAATTCTTAACTGGTGCTTATTTGCTGAATATTGCGATAACTGAGCTTTTATTTTTTTTTCTTTAGAAGTTTTTGCTTTCTCTGGGCTGTATTTCCGTTATTGCTTCTATCATTACACGTCTCAGGCTTACCTTAAAGGCATATTACTTTCTAGTGTAGAGCTTGTGAAATCGATTGCCTTTCTTTTTCTTGTCTCGTTAAAAACTACTTTGATGAACTCCCTTAAAAAATTGTTGGCACACCCATAAGGTGCTTGTGCAATTGAAATACTTGCGACACAATTGTGATGTGGAGTTATTCCCATACTCTTGCTTTTGTTGTCCTACAGTCCTGCAACGTTGATGAGGAATCAGTTGAAGCTGCTGTGTCACGATGTATGATGCTTGAGACGCTTGACGTTCGCTTTTGTCCCAAGGTCAGGAGTACTTTTGATGTTAAGAAAATGCCCTGTATTGATTTTTGTATTGATACAAGAGCTCATCTGAATTTGCTGATAATCCTTTTTTCCACTTAACAGATTTGTCCATTGAACATGACGAGGTTGCGGGTTGCATGTCCCAGTTTGAAACGCATCTTCAGCAGCCTAGTCCCATCGTGAGGC</genome_strand>
        <mrna_strand>CAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAGAACAGCAGTTGTCAAATGAACAACCAAAGCGTTTGCTAGAGAACCTTAACTGTGTAGGCTGCCCAAATATAAAAAAGGTGCTTATTCCAATGGCACAAGGTTTCCTTTTGTCATCATTAAACCTTTCCCTGTCTGGGAATTTGAAGGAGGTTGATATAGCTTGTTACAACTTGTGCGTTCTCAATTTGAG.................................................................................................CAATTGCTGTTCATTGGAATCATTGCAACTGGAATGTCCAAGATTAAGTAGCCTCTTTCTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCAACGTCGATGAGGAATCAGTTGAAGCTGCTGTGTCACTATGTATGATGCTTGAGACGCTTGACGTTCGCTTTTGTCCCAAG......................................................................................................ATTTGTCCATTGAACATGACGAGGTTGCGGGTTGCATGTCCCAGTTTGAAACGCATCTTTAGCAGCCTAGTACCATCGTGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228399" ref_strand="+" ref_description="SGN-E228399 [cLED-3-H6]">
      <seq>cagcttgaatggatgtattaatatgcatgatttaaattggggattttctggagatcaactgtcacaaatacccagtgttagtatacctcatgtatcttccctgggagaacagcagttgtcaaatgaacaaccaaagcgtttgctagagaaccttaactgtgtaggctgcccaaatataaaaaaggtgcttattccaatggcacaaggtttccttttgtcatcattaaacctttccctgtctgggaatttgaaggaggttgatatagcttgttacaacttgtgcgttctcaatttgagcaattgctgttcattggaatcattgcaactggaatgtccaagattaagtagcctctttcttcagtcctgcaacgttgatgaggaatcagttgaagctgctgtgtcacgatgtatgatgcttgagacgcttgacgttcgcttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="66138" stop="64009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65838" g_stop="65542" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65541" i_stop="65445" i_length="97">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65444" g_stop="65381" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="361" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65380" i_stop="64390" i_length="991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64389" g_stop="64309" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="442" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E228399" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65838" e_stop="65542"/>
          <exon e_start="65444" e_stop="65381"/>
          <exon e_start="64389" e_stop="64309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAGAACAGCAGTTGTCAAATGAACAACCAAAGCGTTTGCTAGAGAACCTTAACTGTGTAGGCTGCCCAAATATAAAAAAGGTGCTTATTCCAATGGCACAAGGTTTCCTTTTGTCATCATTAAACCTTTCCCTGTCTGGGAATTTGAAGGAGGTTGATATAGCTTGTTACAACTTGTGCGTTCTCAATTTGAGGTATGTTCTTTAGCAATATGATTTCGTAGGTTAATGTTGTATCAATGACTTTGTTTTCATGATCATAGTTGTTAATTAATTATATTCTCTTGTTCAGCAATTGCTGTTCATTGGAATCATTGCAACTGGAATGTCCAAGATTAAGTAGCCTCTTTCTTCAGGTATTCTTGTATCTTCAAGGCACTTTCTTTGCCCGCTTTTTAATTCTTGTAGTGGCAGCTTTGCTGCAAAAGTGTTCTTTCTAGTTGTTTTTTATCATTTCGCTTGTGCTTATTTTCCCCTGTTGAGGTAGTAATAGTTTTTTAACTTGGCACGAAGGATATGCAAACTGTACAACCATTACAAATGTCAGTCCCCTTCCCACCTTGTAGGGACTTTATGAGTTCTATAAATGATTCAACTTCATTTTCAATTACCTTTTTACACAAAAGACTCCTCCATTCAGGATAGGAGGATGCTCGTTGGTCTGTTTTACAAGACATTCTCGCCTGCCTCTGGTTCAGTAGGTTGGTATGGAGAACATGCATACCCTTAAGCTTGATATTCTGTAGAGAGAACATGACTAATCAAGTCACTAATGGGATTGTATTGTAAGATCTAATAGCTAGCTGCATATTGTCTTAGGAGTACTCAAATTAACACAGTGGTCTACTAAAATCCTAATACTCTTCATGGTCTTCCTAGGCATTCATGTGGACAGATAATAAACATTTTCCAAATTTGGAAGTGTTAGAAGTCCTTAGGGATGCAATGTAGTTTGGGGGCATCGTACCTGTATTTTGGAGCATGATGTGCTTGGGCTAAAATTACTGAAAGGAGAATTTGAATTCTTAACTGGTGCTTATTTGCTGAATATTGCGATAACTGAGCTTTTATTTTTTTTTCTTTAGAAGTTTTTGCTTTCTCTGGGCTGTATTTCCGTTATTGCTTCTATCATTACACGTCTCAGGCTTACCTTAAAGGCATATTACTTTCTAGTGTAGAGCTTGTGAAATCGATTGCCTTTCTTTTTCTTGTCTCGTTAAAAACTACTTTGATGAACTCCCTTAAAAAATTGTTGGCACACCCATAAGGTGCTTGTGCAATTGAAATACTTGCGACACAATTGTGATGTGGAGTTATTCCCATACTCTTGCTTTTGTTGTCCTACAGTCCTGCAACGTTGATGAGGAATCAGTTGAAGCTGCTGTGTCACGATGTATGATGCTTGAGACGCTTGACGTTCGCTTTTGT</genome_strand>
        <mrna_strand>CAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAGAACAGCAGTTGTCAAATGAACAACCAAAGCGTTTGCTAGAGAACCTTAACTGTGTAGGCTGCCCAAATATAAAAAAGGTGCTTATTCCAATGGCACAAGGTTTCCTTTTGTCATCATTAAACCTTTCCCTGTCTGGGAATTTGAAGGAGGTTGATATAGCTTGTTACAACTTGTGCGTTCTCAATTTGAG.................................................................................................CAATTGCTGTTCATTGGAATCATTGCAACTGGAATGTCCAAGATTAAGTAGCCTCTTTCTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCAACGTTGATGAGGAATCAGTTGAAGCTGCTGTGTCACGATGTATGATGCTTGAGACGCTTGACGTTCGCTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320032" ref_strand="+" ref_description="SGN-E320032 [cTOB-21-E7]">
      <seq>aagttgcaagcatgcaagtatctcactgatacatctttggaacccctctataaagaaaatgctcttccagccctttgtgagttggatctgtcgtatgggaccttatgccaatcagccattgaggaattgcttgcttgctgcacacatttgagtcatgtcagcttgaatggatgtattaatatgcatgatttaaattggggattttctggagatcaactgtcacaaatacccagtgttagtatacctcatgtatcttccctgggagaacagcagttgtcaaatgaacaaccaaagcgtttgctagagaaccttaactgtgtaggctgcccaaatataaaaaaggtgcttattccaatggcacaaggtttccttttgtcatcattaaacctttccctgtctgggaatttgaaggaggttgatatagcttgttacaacttgtgcgttctcaatttgagcaattgctgttcattggaatcattgcaactggaatgtccaagattaagtagcctctttcttcagtcctgcaacgttgatgaggaatcagttgaagctgctgtgtcacgatgtatgatgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="66296" stop="64032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65996" g_stop="65542" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65541" i_stop="65445" i_length="97">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65444" g_stop="65381" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="519" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65380" i_stop="64390" i_length="991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64389" g_stop="64332" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="577" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E320032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65996" e_stop="65542"/>
          <exon e_start="65444" e_stop="65381"/>
          <exon e_start="64389" e_stop="64332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGCAAGCATGCAAGTATCTCACTGATACATCTTTGGAACCCCTCTATAAAGAAAATGCTCTTCCAGCCCTTTGTGAGTTGGATCTGTCGTATGGGACCTTATGCCAATCAGCCATTGAGGAATTGCTTGCTTGCTGCACACATTTGAGTCATGTCAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAGAACAGCAGTTGTCAAATGAACAACCAAAGCGTTTGCTAGAGAACCTTAACTGTGTAGGCTGCCCAAATATAAAAAAGGTGCTTATTCCAATGGCACAAGGTTTCCTTTTGTCATCATTAAACCTTTCCCTGTCTGGGAATTTGAAGGAGGTTGATATAGCTTGTTACAACTTGTGCGTTCTCAATTTGAGGTATGTTCTTTAGCAATATGATTTCGTAGGTTAATGTTGTATCAATGACTTTGTTTTCATGATCATAGTTGTTAATTAATTATATTCTCTTGTTCAGCAATTGCTGTTCATTGGAATCATTGCAACTGGAATGTCCAAGATTAAGTAGCCTCTTTCTTCAGGTATTCTTGTATCTTCAAGGCACTTTCTTTGCCCGCTTTTTAATTCTTGTAGTGGCAGCTTTGCTGCAAAAGTGTTCTTTCTAGTTGTTTTTTATCATTTCGCTTGTGCTTATTTTCCCCTGTTGAGGTAGTAATAGTTTTTTAACTTGGCACGAAGGATATGCAAACTGTACAACCATTACAAATGTCAGTCCCCTTCCCACCTTGTAGGGACTTTATGAGTTCTATAAATGATTCAACTTCATTTTCAATTACCTTTTTACACAAAAGACTCCTCCATTCAGGATAGGAGGATGCTCGTTGGTCTGTTTTACAAGACATTCTCGCCTGCCTCTGGTTCAGTAGGTTGGTATGGAGAACATGCATACCCTTAAGCTTGATATTCTGTAGAGAGAACATGACTAATCAAGTCACTAATGGGATTGTATTGTAAGATCTAATAGCTAGCTGCATATTGTCTTAGGAGTACTCAAATTAACACAGTGGTCTACTAAAATCCTAATACTCTTCATGGTCTTCCTAGGCATTCATGTGGACAGATAATAAACATTTTCCAAATTTGGAAGTGTTAGAAGTCCTTAGGGATGCAATGTAGTTTGGGGGCATCGTACCTGTATTTTGGAGCATGATGTGCTTGGGCTAAAATTACTGAAAGGAGAATTTGAATTCTTAACTGGTGCTTATTTGCTGAATATTGCGATAACTGAGCTTTTATTTTTTTTTCTTTAGAAGTTTTTGCTTTCTCTGGGCTGTATTTCCGTTATTGCTTCTATCATTACACGTCTCAGGCTTACCTTAAAGGCATATTACTTTCTAGTGTAGAGCTTGTGAAATCGATTGCCTTTCTTTTTCTTGTCTCGTTAAAAACTACTTTGATGAACTCCCTTAAAAAATTGTTGGCACACCCATAAGGTGCTTGTGCAATTGAAATACTTGCGACACAATTGTGATGTGGAGTTATTCCCATACTCTTGCTTTTGTTGTCCTACAGTCCTGCAACGTTGATGAGGAATCAGTTGAAGCTGCTGTGTCACGATGTATGATGCTTG</genome_strand>
        <mrna_strand>AAGTTGCAAGCATGCAAGTATCTCACTGATACATCTTTGGAACCCCTCTATAAAGAAAATGCTCTTCCAGCCCTTTGTGAGTTGGATCTGTCGTATGGGACCTTATGCCAATCAGCCATTGAGGAATTGCTTGCTTGCTGCACACATTTGAGTCATGTCAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAGAACAGCAGTTGTCAAATGAACAACCAAAGCGTTTGCTAGAGAACCTTAACTGTGTAGGCTGCCCAAATATAAAAAAGGTGCTTATTCCAATGGCACAAGGTTTCCTTTTGTCATCATTAAACCTTTCCCTGTCTGGGAATTTGAAGGAGGTTGATATAGCTTGTTACAACTTGTGCGTTCTCAATTTGAG.................................................................................................CAATTGCTGTTCATTGGAATCATTGCAACTGGAATGTCCAAGATTAAGTAGCCTCTTTCTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCAACGTTGATGAGGAATCAGTTGAAGCTGCTGTGTCACGATGTATGATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250774" ref_strand="+" ref_description="SGN-E250774 [cLEG-7-J6]">
      <seq>tgtgatggactcctctctttgcagtccctcccaaacttgacctaccttgatctatgctatacgtttttggttaccttgcaacctgtttatgaatcatgcttgcagttaaaggtcctaaagttgcaagcatgcaagtatctcactgatacatctttggaacccctctataaagaaaatgctcttccagccctttgtgagttggatctgtcgtatgggaccttatgccaatcagccattgaggaattgcttgcttgctgcacacatttgagtcatgtcagcttgaatggatgtattaatatgcatgatttaaattggggattttctggagatcaactgtcacaaatacccagtgttagtatacctcatgtatcttccctgggagaacagcagttgtcaaatgaacaaccaaagcgtttgctagagaaccttaactgtgtaggctgcccaaatataaaaaaggtgcttattccaatggcacaaggtttccttttgtcatcattaaacctttccctgtctggggaatttgaaggaggttgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="67996" stop="65276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67696" g_stop="67586" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67585" i_stop="66003" i_length="1583">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66002" g_stop="65576" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="539" r_length="428" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E250774" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67696" e_stop="67586"/>
          <exon e_start="66002" e_stop="65576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGATGGACTCCTCTCTTTGCAGTCCCTCCCAAACTTGACCTACCTTGATCTATCCTATACGTTTTTGGTTACCTTGCAACCTGTTTATGAATCATGCTTGCAGTTAAAGGTAACTTCTATCACCTAAGCATATTATCACTTTCTCCATTACAGTGGGAAGCTAGATGAACTTAATTTAACACTCTATTTTGTGGAAAAAGTATGCCTATTTATCTAGTGTAGACTCTTCTAGATCTATGGGCCCTTTCCTATCTTTTTTTCTATTGGTATCAATGGGATGCGCTGGCTTAAGTTTGTGCTGATTAAAATACCTAACTACAAAATTTACTCATGTTAAGATGGGATGAACACACGGTCATAAGCCAATTACTTTAATCTCTCCTTTTCCTTTTTCTGTTCTCCTTTTTTCCCTCTTGCAGTATAAGCTAAAACACATGGATGTAAGTAACAATTTGTGAATCAGTTCTGACTGATTGAAAGTTTATTTCAGTAGAACTGATTTTATTTTGACTATTGCAAATTTAATAATCATTGTTTGTGGCCATATTTTTCGGGAACTAGAAGTGGTTTTTTTTCCTTTAGTTTTTTGTTAGTTAAGGTGTTTGACCATTCTTCTTGGAAAAGAAATGTGATCTTTAGTACCATAAGCTGTTTCTCTGTTGTGGCTAAGAAGTCAACTTTGAAGCTTTTCATTAAGCAGAAGAAGATGCAGAACCACAAAATTTCAAATTTTCAATACAAAATACCATTATAATTTTCTTACCAAGTTATACCACAGTACTGACGGGTGCCAACTGTATTAATTTAAAGAGGAAAGCCCGGTGCATTATGCTCTGGGTCCGGAGAACGGCCGGATCACTAGGGTCTATTATAGACAGCCTTAGGCTTTAGCTTTTACCTGCTCTGGTGGAGCTGGAACAACAGAAACTGTAAAGAGCAATCAGAAAACTTGTAAGAGGTTTCCATTTTGCATTGAAAAGAACTCTAGTTGGAGGGCAAGGGAAAGAGAGTCAACAAAGTATAGAATAAGATTGTAGATTGTTGGACTTCTAAAATCTACAGTTATATTAGCTGTTGATGGAGTAGGATATTGTAATGCTATTCCAGGACTGATGATGTTGTCTCTGTTCTCAAATAGTTGTGTCACTTGGCTGGATTGTTTATAAATGCACTTGTTAAATATTACGAAACTCTAGACTAGAATTTCCACCTTAACTGTTTCATTATCGGCCCTCCTTTTTAGACCCTTGAAGATGGACGGCCTGGAATTGTGGAAGTTAAATGTGGGATCCAGTTACTGTAGGCATTCTATTGTTCTTTTTTATTTTGGAGTGTAACATCTGAATATTTCTACTTTCCAACAGATGCTTTAACTTTTCCATATCCAATGTTTGCCATTGTCTTGTACCCAATTTGTTTCAGTGCAAGGGCTTGAGTTCTTCCCTGTATGCAGATTTTCTAATGCTATATCTGAAATTTTCTGATGCGACTCTAGTTTAGCAACGCAAGTGTGTTTCTCTTTTTTGCTGCACTAGGCACATCCTTATTGCTTTTGGGAAAAACTTTTTGGATCTGCATGATACATTGTTGGGCTTTTTTGGCTTACTGCCCCTCACCCCCACCCCCACCTTCCTTTTTTAACCCCTCTCTAAGGTTTTTTATATATATATCTATATATATGTTATGTTGTAGGTCCTAAAGTTGCAAGCATGCAAGTATCTCACTGATACATCTTTGGAACCCCTCTATAAAGAAAATGCTCTTCCAGCCCTTTGTGAGTTGGATCTGTCGTATGGGACCTTATGCCAATCAGCCATTGAGGAATTGCTTGCTTGCTGCACACATTTGAGTCATGTCAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAGAACAGCAGTTGTCAAATGAACAACCAAAGCGTTTGCTAGAGAACCTTAACTGTGTAGGCTGCCCAAATATAAAAAAGGTGCTTATTCCAATGGCACAAGGTTTCCTTTTGTCATCATTAAACCTTTCCCTGTCT-GGGAATTTGAAGGAGGTTGATA</genome_strand>
        <mrna_strand>TGTGATGGACTCCTCTCTTTGCAGTCCCTCCCAAACTTGACCTACCTTGATCTATGCTATACGTTTTTGGTTACCTTGCAACCTGTTTATGAATCATGCTTGCAGTTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTAAAGTTGCAAGCATGCAAGTATCTCACTGATACATCTTTGGAACCCCTCTATAAAGAAAATGCTCTTCCAGCCCTTTGTGAGTTGGATCTGTCGTATGGGACCTTATGCCAATCAGCCATTGAGGAATTGCTTGCTTGCTGCACACATTTGAGTCATGTCAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAGAACAGCAGTTGTCAAATGAACAACCAAAGCGTTTGCTAGAGAACCTTAACTGTGTAGGCTGCCCAAATATAAAAAAGGTGCTTATTCCAATGGCACAAGGTTTCCTTTTGTCATCATTAAACCTTTCCCTGTCTGGGGAATTTGAAGGAGGTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206868" ref_strand="+" ref_description="SGN-E206868 [cLEC-33-O16]">
      <seq>gctgtggtgtgctctctgaagcatctattaattgccccctgttaacctcttttgatgcttcattctgcaaccaactcacggatgattgtttatctgccacgacttcgacgtgccccctcatcgagtcattagtattaatgtcatgtccatctgttggctgcgatggactcctctctttgcagtccctcccaaacttgacctaccttgatctatcctatacgtttttggttaccttgcaacctgtttatgaatcatgcttgcagttaaaggtcctaaagttgcaagcatgcaagtatctcactgatacatctttggaacccctctataaagaaaatgctcttccagccctttgtgagttggatctgtcgtatgggaccttatgccaatcagccattgaggaattgcttgcttgctgcacacatttgagtcatgtcagcttgaatggatgtattaatatgcatgatttaaattggggattttctggagatcaactgtcacaaatacccagtgttagtatacctcatgtatcttccctgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="68237" stop="65432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67937" g_stop="67868" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67867" i_stop="67785" i_length="83">
            <donor d_prob="0.877" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67784" g_stop="67586" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="269" r_length="199" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67585" i_stop="66003" i_length="1583">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66002" g_stop="65732" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="540" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E206868" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67937" e_stop="67868"/>
          <exon e_start="67784" e_stop="67586"/>
          <exon e_start="66002" e_stop="65732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGGTGTGCTCTCTGAAGCATCTATTAATTGCCCCCTGTTAACCTCTTTTGATGCTTCATTCTGCAGGTTGCTTACTTTCTCTCGGCTGTCACACGTGCATATTTTTTTTAGTTCTGTCACATCTCATTAATTTCTTTCCATATATGCAGCCAACTCAAGGATGATTGTTTATCTGCCACGACTTCGTCGTGCCCCCTCATCGAGTCATTAGTATTAATGTCATGTCCATCTGTTGGCTGTGATGGACTCCTCTCTTTGCAGTCCCTCCCAAACTTGACCTACCTTGATCTATCCTATACGTTTTTGGTTACCTTGCAACCTGTTTATGAATCATGCTTGCAGTTAAAGGTAACTTCTATCACCTAAGCATATTATCACTTTCTCCATTACAGTGGGAAGCTAGATGAACTTAATTTAACACTCTATTTTGTGGAAAAAGTATGCCTATTTATCTAGTGTAGACTCTTCTAGATCTATGGGCCCTTTCCTATCTTTTTTTCTATTGGTATCAATGGGATGCGCTGGCTTAAGTTTGTGCTGATTAAAATACCTAACTACAAAATTTACTCATGTTAAGATGGGATGAACACACGGTCATAAGCCAATTACTTTAATCTCTCCTTTTCCTTTTTCTGTTCTCCTTTTTTCCCTCTTGCAGTATAAGCTAAAACACATGGATGTAAGTAACAATTTGTGAATCAGTTCTGACTGATTGAAAGTTTATTTCAGTAGAACTGATTTTATTTTGACTATTGCAAATTTAATAATCATTGTTTGTGGCCATATTTTTCGGGAACTAGAAGTGGTTTTTTTTCCTTTAGTTTTTTGTTAGTTAAGGTGTTTGACCATTCTTCTTGGAAAAGAAATGTGATCTTTAGTACCATAAGCTGTTTCTCTGTTGTGGCTAAGAAGTCAACTTTGAAGCTTTTCATTAAGCAGAAGAAGATGCAGAACCACAAAATTTCAAATTTTCAATACAAAATACCATTATAATTTTCTTACCAAGTTATACCACAGTACTGACGGGTGCCAACTGTATTAATTTAAAGAGGAAAGCCCGGTGCATTATGCTCTGGGTCCGGAGAACGGCCGGATCACTAGGGTCTATTATAGACAGCCTTAGGCTTTAGCTTTTACCTGCTCTGGTGGAGCTGGAACAACAGAAACTGTAAAGAGCAATCAGAAAACTTGTAAGAGGTTTCCATTTTGCATTGAAAAGAACTCTAGTTGGAGGGCAAGGGAAAGAGAGTCAACAAAGTATAGAATAAGATTGTAGATTGTTGGACTTCTAAAATCTACAGTTATATTAGCTGTTGATGGAGTAGGATATTGTAATGCTATTCCAGGACTGATGATGTTGTCTCTGTTCTCAAATAGTTGTGTCACTTGGCTGGATTGTTTATAAATGCACTTGTTAAATATTACGAAACTCTAGACTAGAATTTCCACCTTAACTGTTTCATTATCGGCCCTCCTTTTTAGACCCTTGAAGATGGACGGCCTGGAATTGTGGAAGTTAAATGTGGGATCCAGTTACTGTAGGCATTCTATTGTTCTTTTTTATTTTGGAGTGTAACATCTGAATATTTCTACTTTCCAACAGATGCTTTAACTTTTCCATATCCAATGTTTGCCATTGTCTTGTACCCAATTTGTTTCAGTGCAAGGGCTTGAGTTCTTCCCTGTATGCAGATTTTCTAATGCTATATCTGAAATTTTCTGATGCGACTCTAGTTTAGCAACGCAAGTGTGTTTCTCTTTTTTGCTGCACTAGGCACATCCTTATTGCTTTTGGGAAAAACTTTTTGGATCTGCATGATACATTGTTGGGCTTTTTTGGCTTACTGCCCCTCACCCCCACCCCCACCTTCCTTTTTTAACCCCTCTCTAAGGTTTTTTATATATATATCTATATATATGTTATGTTGTAGGTCCTAAAGTTGCAAGCATGCAAGTATCTCACTGATACATCTTTGGAACCCCTCTATAAAGAAAATGCTCTTCCAGCCCTTTGTGAGTTGGATCTGTCGTATGGGACCTTATGCCAATCAGCCATTGAGGAATTGCTTGCTTGCTGCACACATTTGAGTCATGTCAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAG</genome_strand>
        <mrna_strand>GCTGTGGTGTGCTCTCTGAAGCATCTATTAATTGCCCCCTGTTAACCTCTTTTGATGCTTCATTCTGCAA...................................................................................CCAACTCACGGATGATTGTTTATCTGCCACGACTTCGACGTGCCCCCTCATCGAGTCATTAGTATTAATGTCATGTCCATCTGTTGGCTGCGATGGACTCCTCTCTTTGCAGTCCCTCCCAAACTTGACCTACCTTGATCTATCCTATACGTTTTTGGTTACCTTGCAACCTGTTTATGAATCATGCTTGCAGTTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTAAAGTTGCAAGCATGCAAGTATCTCACTGATACATCTTTGGAACCCCTCTATAAAGAAAATGCTCTTCCAGCCCTTTGTGAGTTGGATCTGTCGTATGGGACCTTATGCCAATCAGCCATTGAGGAATTGCTTGCTTGCTGCACACATTTGAGTCATGTCAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434892" ref_strand="+" ref_description="SGN-E434892 [STM-60-N1]">
      <seq>cttgaacaagtctctttagatggttgtgatcatcttgaagtagcatcattttgcccagttggtcttaggtcacttaatcttggtatatgccccaaaatgaatatgctccatattgaagctccacaaatggcttcacttgagctgaagggctgtggtgtgctatctgaagcatctattaattgccccctgttaacctcttttgatgcttcattctgcagccaactcaaggatgattgtttatctgccacggcttcgtcgtgccccctcatcgagtcattagtattaatgtcatgtccatctgttggctgtgatggactcctctctttgcagtccctcccaaacttgacctaccttgatctatcctatacgtttttggttaccctgcaacctgtttatgaatcatgcttgcagttaaaggtcctaaagttgcaagcatgcaagtatctcactgatacatctttggaacccctctataaagaaaatgctctcccagccctttgtgagttggatttgtcgtatgggaccttatgccaatcagccattgaggaattgcttgcttactgcacacatttgagtcatgtcagcttgaatggatgtattaatatgcatgatttaaattggggatttactggagatcaactgtcgcatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="68547" stop="65468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68247" g_stop="68191" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68190" i_stop="68029" i_length="162">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68028" g_stop="67868" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="218" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67867" i_stop="67785" i_length="83">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67784" g_stop="67586" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="417" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67585" i_stop="66003" i_length="1583">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66002" g_stop="65768" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="652" r_length="235" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E434892" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68247" e_stop="68191"/>
          <exon e_start="68028" e_stop="67868"/>
          <exon e_start="67784" e_stop="67586"/>
          <exon e_start="66002" e_stop="65768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAACAAGTATCTTTAGATGGTTGTGATCATCTTGAAGTAGCATCATTTTGCCCCGTAAGTGATCATCAACTCCTTCCTCTTTTCTATACATCATCTCTGGGTTTGAGACTGAGTTGTATGTTCACCTGCTGATTTTATGATTGTTAATTTGTTACACATGCATTTTTTTCTTTATTTATATCCAAGTGGTTTGATAAATGTGTGCTCTTATTCCAGGTTGGTCTTAGGTCACTTAATCTTGGTATATGCCCCAAAATGAATATGCTTCATATTGAAGCTCCACAAATGGCTTCACTTGAGCTGAAGGGCTGTGGTGTGCTCTCTGAAGCATCTATTAATTGCCCCCTGTTAACCTCTTTTGATGCTTCATTCTGCAGGTTGCTTACTTTCTCTCGGCTGTCACACGTGCATATTTTTTTTAGTTCTGTCACATCTCATTAATTTCTTTCCATATATGCAGCCAACTCAAGGATGATTGTTTATCTGCCACGACTTCGTCGTGCCCCCTCATCGAGTCATTAGTATTAATGTCATGTCCATCTGTTGGCTGTGATGGACTCCTCTCTTTGCAGTCCCTCCCAAACTTGACCTACCTTGATCTATCCTATACGTTTTTGGTTACCTTGCAACCTGTTTATGAATCATGCTTGCAGTTAAAGGTAACTTCTATCACCTAAGCATATTATCACTTTCTCCATTACAGTGGGAAGCTAGATGAACTTAATTTAACACTCTATTTTGTGGAAAAAGTATGCCTATTTATCTAGTGTAGACTCTTCTAGATCTATGGGCCCTTTCCTATCTTTTTTTCTATTGGTATCAATGGGATGCGCTGGCTTAAGTTTGTGCTGATTAAAATACCTAACTACAAAATTTACTCATGTTAAGATGGGATGAACACACGGTCATAAGCCAATTACTTTAATCTCTCCTTTTCCTTTTTCTGTTCTCCTTTTTTCCCTCTTGCAGTATAAGCTAAAACACATGGATGTAAGTAACAATTTGTGAATCAGTTCTGACTGATTGAAAGTTTATTTCAGTAGAACTGATTTTATTTTGACTATTGCAAATTTAATAATCATTGTTTGTGGCCATATTTTTCGGGAACTAGAAGTGGTTTTTTTTCCTTTAGTTTTTTGTTAGTTAAGGTGTTTGACCATTCTTCTTGGAAAAGAAATGTGATCTTTAGTACCATAAGCTGTTTCTCTGTTGTGGCTAAGAAGTCAACTTTGAAGCTTTTCATTAAGCAGAAGAAGATGCAGAACCACAAAATTTCAAATTTTCAATACAAAATACCATTATAATTTTCTTACCAAGTTATACCACAGTACTGACGGGTGCCAACTGTATTAATTTAAAGAGGAAAGCCCGGTGCATTATGCTCTGGGTCCGGAGAACGGCCGGATCACTAGGGTCTATTATAGACAGCCTTAGGCTTTAGCTTTTACCTGCTCTGGTGGAGCTGGAACAACAGAAACTGTAAAGAGCAATCAGAAAACTTGTAAGAGGTTTCCATTTTGCATTGAAAAGAACTCTAGTTGGAGGGCAAGGGAAAGAGAGTCAACAAAGTATAGAATAAGATTGTAGATTGTTGGACTTCTAAAATCTACAGTTATATTAGCTGTTGATGGAGTAGGATATTGTAATGCTATTCCAGGACTGATGATGTTGTCTCTGTTCTCAAATAGTTGTGTCACTTGGCTGGATTGTTTATAAATGCACTTGTTAAATATTACGAAACTCTAGACTAGAATTTCCACCTTAACTGTTTCATTATCGGCCCTCCTTTTTAGACCCTTGAAGATGGACGGCCTGGAATTGTGGAAGTTAAATGTGGGATCCAGTTACTGTAGGCATTCTATTGTTCTTTTTTATTTTGGAGTGTAACATCTGAATATTTCTACTTTCCAACAGATGCTTTAACTTTTCCATATCCAATGTTTGCCATTGTCTTGTACCCAATTTGTTTCAGTGCAAGGGCTTGAGTTCTTCCCTGTATGCAGATTTTCTAATGCTATATCTGAAATTTTCTGATGCGACTCTAGTTTAGCAACGCAAGTGTGTTTCTCTTTTTTGCTGCACTAGGCACATCCTTATTGCTTTTGGGAAAAACTTTTTGGATCTGCATGATACATTGTTGGGCTTTTTTGGCTTACTGCCCCTCACCCCCACCCCCACCTTCCTTTTTTAACCCCTCTCTAAGGTTTTTTATATATATATCTATATATATGTTATGTTGTAGGTCCTAAAGTTGCAAGCATGCAAGTATCTCACTGATACATCTTTGGAACCCCTCTATAAAGAAAATGCTCTTCCAGCCCTTTGTGAGTTGGATCTGTCGTATGGGACCTTATGCCAATCAGCCATTGAGGAATTGCTTGCTTGCTGCACACATTTGAGTCATGTCAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATAC</genome_strand>
        <mrna_strand>CTTGAACAAGTCTCTTTAGATGGTTGTGATCATCTTGAAGTAGCATCATTTTGCCCA..................................................................................................................................................................GTTGGTCTTAGGTCACTTAATCTTGGTATATGCCCCAAAATGAATATGCTCCATATTGAAGCTCCACAAATGGCTTCACTTGAGCTGAAGGGCTGTGGTGTGCTATCTGAAGCATCTATTAATTGCCCCCTGTTAACCTCTTTTGATGCTTCATTCTGCAG...................................................................................CCAACTCAAGGATGATTGTTTATCTGCCACGGCTTCGTCGTGCCCCCTCATCGAGTCATTAGTATTAATGTCATGTCCATCTGTTGGCTGTGATGGACTCCTCTCTTTGCAGTCCCTCCCAAACTTGACCTACCTTGATCTATCCTATACGTTTTTGGTTACCCTGCAACCTGTTTATGAATCATGCTTGCAGTTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTAAAGTTGCAAGCATGCAAGTATCTCACTGATACATCTTTGGAACCCCTCTATAAAGAAAATGCTCTCCCAGCCCTTTGTGAGTTGGATTTGTCGTATGGGACCTTATGCCAATCAGCCATTGAGGAATTGCTTGCTTACTGCACACATTTGAGTCATGTCAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTACTGGAGATCAACTGTCGCATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409414" ref_strand="+" ref_description="SGN-E409414 [PPI-14-C7]">
      <seq>cttgaacaagtctctttagatggttgtgatcatcttgaagtagcatcattttgcccagttggtcttaggtcacttaatcttggtatatgccccaaaatgaatatgctccatattgaagctccacaaatggcttcacttgagctgaagggctgtggtgtgctatctgaagcatctattaattgccccctgttaacctcttttgatgcttcattctgcagccaactcaaggatgattgtttatctgccacggcttcgtcgtgccccctcatcgagtcattagtattaatgtcatgtccatctgttggctgtgatggactcctctctttgcagtccctcccaaacttgacctaccttgatctatcctatacgtttttggttaccctgcaacctgtttatgaatcatgcttgcagttaaaggtcctaaagttgcaagcatgcaagtatctcactgatacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="68547" stop="65661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68247" g_stop="68191" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68190" i_stop="68029" i_length="162">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68028" g_stop="67868" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="218" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67867" i_stop="67785" i_length="83">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67784" g_stop="67586" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="417" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67585" i_stop="66003" i_length="1583">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66002" g_stop="65961" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="459" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E409414" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68247" e_stop="68191"/>
          <exon e_start="68028" e_stop="67868"/>
          <exon e_start="67784" e_stop="67586"/>
          <exon e_start="66002" e_stop="65961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAACAAGTATCTTTAGATGGTTGTGATCATCTTGAAGTAGCATCATTTTGCCCCGTAAGTGATCATCAACTCCTTCCTCTTTTCTATACATCATCTCTGGGTTTGAGACTGAGTTGTATGTTCACCTGCTGATTTTATGATTGTTAATTTGTTACACATGCATTTTTTTCTTTATTTATATCCAAGTGGTTTGATAAATGTGTGCTCTTATTCCAGGTTGGTCTTAGGTCACTTAATCTTGGTATATGCCCCAAAATGAATATGCTTCATATTGAAGCTCCACAAATGGCTTCACTTGAGCTGAAGGGCTGTGGTGTGCTCTCTGAAGCATCTATTAATTGCCCCCTGTTAACCTCTTTTGATGCTTCATTCTGCAGGTTGCTTACTTTCTCTCGGCTGTCACACGTGCATATTTTTTTTAGTTCTGTCACATCTCATTAATTTCTTTCCATATATGCAGCCAACTCAAGGATGATTGTTTATCTGCCACGACTTCGTCGTGCCCCCTCATCGAGTCATTAGTATTAATGTCATGTCCATCTGTTGGCTGTGATGGACTCCTCTCTTTGCAGTCCCTCCCAAACTTGACCTACCTTGATCTATCCTATACGTTTTTGGTTACCTTGCAACCTGTTTATGAATCATGCTTGCAGTTAAAGGTAACTTCTATCACCTAAGCATATTATCACTTTCTCCATTACAGTGGGAAGCTAGATGAACTTAATTTAACACTCTATTTTGTGGAAAAAGTATGCCTATTTATCTAGTGTAGACTCTTCTAGATCTATGGGCCCTTTCCTATCTTTTTTTCTATTGGTATCAATGGGATGCGCTGGCTTAAGTTTGTGCTGATTAAAATACCTAACTACAAAATTTACTCATGTTAAGATGGGATGAACACACGGTCATAAGCCAATTACTTTAATCTCTCCTTTTCCTTTTTCTGTTCTCCTTTTTTCCCTCTTGCAGTATAAGCTAAAACACATGGATGTAAGTAACAATTTGTGAATCAGTTCTGACTGATTGAAAGTTTATTTCAGTAGAACTGATTTTATTTTGACTATTGCAAATTTAATAATCATTGTTTGTGGCCATATTTTTCGGGAACTAGAAGTGGTTTTTTTTCCTTTAGTTTTTTGTTAGTTAAGGTGTTTGACCATTCTTCTTGGAAAAGAAATGTGATCTTTAGTACCATAAGCTGTTTCTCTGTTGTGGCTAAGAAGTCAACTTTGAAGCTTTTCATTAAGCAGAAGAAGATGCAGAACCACAAAATTTCAAATTTTCAATACAAAATACCATTATAATTTTCTTACCAAGTTATACCACAGTACTGACGGGTGCCAACTGTATTAATTTAAAGAGGAAAGCCCGGTGCATTATGCTCTGGGTCCGGAGAACGGCCGGATCACTAGGGTCTATTATAGACAGCCTTAGGCTTTAGCTTTTACCTGCTCTGGTGGAGCTGGAACAACAGAAACTGTAAAGAGCAATCAGAAAACTTGTAAGAGGTTTCCATTTTGCATTGAAAAGAACTCTAGTTGGAGGGCAAGGGAAAGAGAGTCAACAAAGTATAGAATAAGATTGTAGATTGTTGGACTTCTAAAATCTACAGTTATATTAGCTGTTGATGGAGTAGGATATTGTAATGCTATTCCAGGACTGATGATGTTGTCTCTGTTCTCAAATAGTTGTGTCACTTGGCTGGATTGTTTATAAATGCACTTGTTAAATATTACGAAACTCTAGACTAGAATTTCCACCTTAACTGTTTCATTATCGGCCCTCCTTTTTAGACCCTTGAAGATGGACGGCCTGGAATTGTGGAAGTTAAATGTGGGATCCAGTTACTGTAGGCATTCTATTGTTCTTTTTTATTTTGGAGTGTAACATCTGAATATTTCTACTTTCCAACAGATGCTTTAACTTTTCCATATCCAATGTTTGCCATTGTCTTGTACCCAATTTGTTTCAGTGCAAGGGCTTGAGTTCTTCCCTGTATGCAGATTTTCTAATGCTATATCTGAAATTTTCTGATGCGACTCTAGTTTAGCAACGCAAGTGTGTTTCTCTTTTTTGCTGCACTAGGCACATCCTTATTGCTTTTGGGAAAAACTTTTTGGATCTGCATGATACATTGTTGGGCTTTTTTGGCTTACTGCCCCTCACCCCCACCCCCACCTTCCTTTTTTAACCCCTCTCTAAGGTTTTTTATATATATATCTATATATATGTTATGTTGTAGGTCCTAAAGTTGCAAGCATGCAAGTATCTCACTGATACATCT</genome_strand>
        <mrna_strand>CTTGAACAAGTCTCTTTAGATGGTTGTGATCATCTTGAAGTAGCATCATTTTGCCCA..................................................................................................................................................................GTTGGTCTTAGGTCACTTAATCTTGGTATATGCCCCAAAATGAATATGCTCCATATTGAAGCTCCACAAATGGCTTCACTTGAGCTGAAGGGCTGTGGTGTGCTATCTGAAGCATCTATTAATTGCCCCCTGTTAACCTCTTTTGATGCTTCATTCTGCAG...................................................................................CCAACTCAAGGATGATTGTTTATCTGCCACGGCTTCGTCGTGCCCCCTCATCGAGTCATTAGTATTAATGTCATGTCCATCTGTTGGCTGTGATGGACTCCTCTCTTTGCAGTCCCTCCCAAACTTGACCTACCTTGATCTATCCTATACGTTTTTGGTTACCCTGCAACCTGTTTATGAATCATGCTTGCAGTTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTAAAGTTGCAAGCATGCAAGTATCTCACTGATACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379655" ref_strand="+" ref_description="SGN-E379655 [TUS-3-O12]">
      <seq>ttgcccattgcttcaaagaatcaatataacttcaagtgctctcaaaaaattagttttgcagaagcaggaaagcttgacaacaattgcattacagtgtccgaatttgctagaagtagaccttactgagtgtgaatcgctcaccaattctgtttgtgaagttttcagtgatggtggtggctgtcctgtgcttaaatccttagttctggataactgtgagagcttgacacttgtggctttctgcagcacttctttggtttctctttcacttggtggttgccgtgctttaatttctcttgcgcttaggtgcccatatcttgaacaagtatctttagatggttgtgatcatcttgaagtagcatcattttgccccgttggtcttaggtcacttaatcttggtatatgccccaaaatgaatatgcttcatattgaagctccacaaatggcttcacttgagctgaagggctgtggtgtgctctctgaagcatctattaattgccccctgttaacctcttttgatgcttcattctgcagccaactcaaggatgattgtttatctgccacgacttcgtcgtgccccctcatcgagtcattagtattaatgtcatgtccatctgttggctgtgatggactcctctctttgcagtccctccccaacttgacctaccttgatctatcctatacgtttttggttaccttgcaaccctgttatgaatcatgcttgcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="70534" stop="67290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70234" g_stop="70189" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70188" i_stop="70091" i_length="98">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70090" g_stop="69920" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="217" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69919" i_stop="68344" i_length="1576">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68343" g_stop="68191" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="370" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68190" i_stop="68029" i_length="162">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68028" g_stop="67868" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="531" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67867" i_stop="67785" i_length="83">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67784" g_stop="67590" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="726" r_length="195" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E379655" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70234" e_stop="70189"/>
          <exon e_start="70090" e_stop="69920"/>
          <exon e_start="68343" e_stop="68191"/>
          <exon e_start="68028" e_stop="67868"/>
          <exon e_start="67784" e_stop="67590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCCATTGCTTCAAAGAATCAATATAACTTCAAGTGCTCTCAAAGTAAGTGTATTCCTAGATGTTATATATTGTCATCTTATTTTATTGACTAGAATTATTCTATTCATTGAATAATATTTCTCTCCTTCATCATTCCACAGAAATTAGTTTTGCAGAAGCAGGAAAGCTTGACAACAATTGCATTACAGTGTCCGAATTTGCTAGAAGTAGACCTTACTGAGTGTGAATCGCTCACCAATTCTGTTTGTGAAGTTTTCAGTGATGGTGGTGGCTGTCCTGTGCTTAAATCCTTAGTTCTGGATAACTGTGAGGTTGGCAATTTTAGTTCCTCATTGCTAACTTGTGCATTCTTGGTTGTTATTTTTCTAAACCTATCGATATATATGATCTCTTCTTAGTTTTGCTTGTCAACGGAAGGTGGTTCACTTAAGCCGAGTACATTTGTAAGAGTTTGTTTTTGTACTCATGTATATCAATGTGGTTATGGACCTATGATCATAGTGCCATTTTTGCTTTTCTTGTAACAGATACTGGTGATTCTTTTTTATGCATGTTTCCTAGTAAATAAATATAGTACTGAATTATGACAATCAATAATCAGGTATTTTAATTAGTAATCATGAAAGATGATGAAAGGAAAAAAGTATGATCCAAGTGTACTGACCGTTGTGTCATCTGGTTGTGCTTTTTTATTTGCTGTAAGCCTGGGAAGGCGTCAGCCTGGGAAGGCGTTCTACTGGGTGTGCTAAGGGCTCGTTTGATATGAGGGATAAGAGATTACTGATTCCAGGATTAGTTTTAGGATGAGTTTATCCCATGTTTGGTTGGGATAAAATCGAGGGATAACTTATCCCGGTATTGTAGTGTCATTCTTATCCCACATTGAGGATGGGATAAGAACCCTGGACAACTTGTTGCGAGACTCTCCTTCAGTAACTCAGAGAAGTTAAAAAATATTGAAATTGTTCAAGAGGTGAAGCGGGAAAGATGAAAAGTTCTAATTCCTTTGTTTTGGGATTAAGGATAGTGATTATGTATTCCTATATTTACCAGTAGTGTTTATTTTATGCTCACATTTTTAAATTGGCTTGAAGTATTTTTATCTTGTCAAAATATAACTATTAGGGTTAACGTCTTTCTTGGTATCATAAGCTCTTTGTTTCTTTCAACATTTTGATTAGATACATGGGAGTTCTTAAGGGAACGGTTTAAGCTGAACTATAACATGAGAACTATTACCCAGATGGAAGAAGAAAATAGTTCACCTTTTTTTTTCCTGATTCAATTAGAGCTGATGTCACACCATTTAAAGAAAATGTCAAAGCGGAATTTTCTTTTGAAGCTTGATGAAAATATGTACTACTCTTCCAATCAAGATTCCCTTTTATTTGATTTTTGGTGATCAAGAAAAGCAAGGCTGAATTAGGTTTGGGTTTGACATTGCAGTTTCTTAGAGATGTTCAAAATAATGAACTACATTTGTCAATATTCTGGTAGATTATTGAAGAAATTAACAAAAGATAAGTATTATATTTCGGTTATCGTCTCTCCCTCCCCCATGTCCCCTCCCCCCTCCTGGGAATAAGGGGGCCCCACCTGGTGAGAGAGAGTAATATATTCATGTTGCACCCTCCTGGGGAAAAGGGGGCTGAGAGAGGGAAAGGTTTCTACTGTTTTAGAGTGGGTCCTGATTAGCGTTCGCCTTCTGTGTTCTTTTTTCTTCCAGATCTGTTTAGGCTAACACCTATTCAGAAAAGATTTTTTTTTTATATTGAAAGTGAATAATGATATATTTCTGCCTATTCAACTTGAAAGATCCTGCTGTATCTATGTAATATTTGTATGTGTTGTTATGGTCCAAATCTAATTGCGGTCTTTTTTTTTCAGAGCTTGACACTTGTGGCTTTCTGCAGCACTTCTTTGGTTTCTCTTTCACTTGGTGGTTGCCGTGCTTTAATTTCTCTTGCGCTTAGGTGCCCATATCTTGAACAAGTATCTTTAGATGGTTGTGATCATCTTGAAGTAGCATCATTTTGCCCCGTAAGTGATCATCAACTCCTTCCTCTTTTCTATACATCATCTCTGGGTTTGAGACTGAGTTGTATGTTCACCTGCTGATTTTATGATTGTTAATTTGTTACACATGCATTTTTTTCTTTATTTATATCCAAGTGGTTTGATAAATGTGTGCTCTTATTCCAGGTTGGTCTTAGGTCACTTAATCTTGGTATATGCCCCAAAATGAATATGCTTCATATTGAAGCTCCACAAATGGCTTCACTTGAGCTGAAGGGCTGTGGTGTGCTCTCTGAAGCATCTATTAATTGCCCCCTGTTAACCTCTTTTGATGCTTCATTCTGCAGGTTGCTTACTTTCTCTCGGCTGTCACACGTGCATATTTTTTTTAGTTCTGTCACATCTCATTAATTTCTTTCCATATATGCAGCCAACTCAAGGATGATTGTTTATCTGCCACGACTTCGTCGTGCCCCCTCATCGAGTCATTAGTATTAATGTCATGTCCATCTGTTGGCTGTGATGGACTCCTCTCTTTGCAGTCCCTCCCAAACTTGACCTACCTTGATCTATCCTATACGTTTTTGGTTACCTTGCAACCTGTTTATGAATCATGCTTGCAGTT</genome_strand>
        <mrna_strand>TTGCCCATTGCTTCAAAGAATCAATATAACTTCAAGTGCTCTCAAA..................................................................................................AAATTAGTTTTGCAGAAGCAGGAAAGCTTGACAACAATTGCATTACAGTGTCCGAATTTGCTAGAAGTAGACCTTACTGAGTGTGAATCGCTCACCAATTCTGTTTGTGAAGTTTTCAGTGATGGTGGTGGCTGTCCTGTGCTTAAATCCTTAGTTCTGGATAACTGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGACACTTGTGGCTTTCTGCAGCACTTCTTTGGTTTCTCTTTCACTTGGTGGTTGCCGTGCTTTAATTTCTCTTGCGCTTAGGTGCCCATATCTTGAACAAGTATCTTTAGATGGTTGTGATCATCTTGAAGTAGCATCATTTTGCCCC..................................................................................................................................................................GTTGGTCTTAGGTCACTTAATCTTGGTATATGCCCCAAAATGAATATGCTTCATATTGAAGCTCCACAAATGGCTTCACTTGAGCTGAAGGGCTGTGGTGTGCTCTCTGAAGCATCTATTAATTGCCCCCTGTTAACCTCTTTTGATGCTTCATTCTGCAG...................................................................................CCAACTCAAGGATGATTGTTTATCTGCCACGACTTCGTCGTGCCCCCTCATCGAGTCATTAGTATTAATGTCATGTCCATCTGTTGGCTGTGATGGACTCCTCTCTTTGCAGTCCCTCCCCAACTTGACCTACCTTGATCTATCCTATACGTTTTTGGTTACCTTGCAACCCTGTTATGAATCATGCTTGCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208337" ref_strand="+" ref_description="SGN-E208337 [cLEC-37-K19]">
      <seq>ttgcccattgcttcaaagaatcaatataacttcaagtgctctcaaaaaattagttttgcagaagcaggaaagcttgacaacaattgcattacagtgtccgaatttgctagaagtagaccttactgagtgtgaatcgctcaccaattctgtttgtgaagttttcagtgatggtggtggctgtcctgtgcttaaatccttagttctggataactgtgagagcttgacacttgtggctttctgcagcacttctttggtttctctttcacttggtggttgccgtgctttaatttctcttgcgcttaggtgcccatatcttgaacaagtatctttagatggttgtgatcatcttgaagtagcatcattttgccccgttggtcttaggtcacttaatcttggtatatgccccaaaatgaatatgcttcatattgaagctccacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="70534" stop="67659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70234" g_stop="70189" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70188" i_stop="70091" i_length="98">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70090" g_stop="69920" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="217" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69919" i_stop="68344" i_length="1576">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68343" g_stop="68191" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="370" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68190" i_stop="68029" i_length="162">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68028" g_stop="67959" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="440" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E208337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70234" e_stop="70189"/>
          <exon e_start="70090" e_stop="69920"/>
          <exon e_start="68343" e_stop="68191"/>
          <exon e_start="68028" e_stop="67959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCCATTGCTTCAAAGAATCAATATAACTTCAAGTGCTCTCAAAGTAAGTGTATTCCTAGATGTTATATATTGTCATCTTATTTTATTGACTAGAATTATTCTATTCATTGAATAATATTTCTCTCCTTCATCATTCCACAGAAATTAGTTTTGCAGAAGCAGGAAAGCTTGACAACAATTGCATTACAGTGTCCGAATTTGCTAGAAGTAGACCTTACTGAGTGTGAATCGCTCACCAATTCTGTTTGTGAAGTTTTCAGTGATGGTGGTGGCTGTCCTGTGCTTAAATCCTTAGTTCTGGATAACTGTGAGGTTGGCAATTTTAGTTCCTCATTGCTAACTTGTGCATTCTTGGTTGTTATTTTTCTAAACCTATCGATATATATGATCTCTTCTTAGTTTTGCTTGTCAACGGAAGGTGGTTCACTTAAGCCGAGTACATTTGTAAGAGTTTGTTTTTGTACTCATGTATATCAATGTGGTTATGGACCTATGATCATAGTGCCATTTTTGCTTTTCTTGTAACAGATACTGGTGATTCTTTTTTATGCATGTTTCCTAGTAAATAAATATAGTACTGAATTATGACAATCAATAATCAGGTATTTTAATTAGTAATCATGAAAGATGATGAAAGGAAAAAAGTATGATCCAAGTGTACTGACCGTTGTGTCATCTGGTTGTGCTTTTTTATTTGCTGTAAGCCTGGGAAGGCGTCAGCCTGGGAAGGCGTTCTACTGGGTGTGCTAAGGGCTCGTTTGATATGAGGGATAAGAGATTACTGATTCCAGGATTAGTTTTAGGATGAGTTTATCCCATGTTTGGTTGGGATAAAATCGAGGGATAACTTATCCCGGTATTGTAGTGTCATTCTTATCCCACATTGAGGATGGGATAAGAACCCTGGACAACTTGTTGCGAGACTCTCCTTCAGTAACTCAGAGAAGTTAAAAAATATTGAAATTGTTCAAGAGGTGAAGCGGGAAAGATGAAAAGTTCTAATTCCTTTGTTTTGGGATTAAGGATAGTGATTATGTATTCCTATATTTACCAGTAGTGTTTATTTTATGCTCACATTTTTAAATTGGCTTGAAGTATTTTTATCTTGTCAAAATATAACTATTAGGGTTAACGTCTTTCTTGGTATCATAAGCTCTTTGTTTCTTTCAACATTTTGATTAGATACATGGGAGTTCTTAAGGGAACGGTTTAAGCTGAACTATAACATGAGAACTATTACCCAGATGGAAGAAGAAAATAGTTCACCTTTTTTTTTCCTGATTCAATTAGAGCTGATGTCACACCATTTAAAGAAAATGTCAAAGCGGAATTTTCTTTTGAAGCTTGATGAAAATATGTACTACTCTTCCAATCAAGATTCCCTTTTATTTGATTTTTGGTGATCAAGAAAAGCAAGGCTGAATTAGGTTTGGGTTTGACATTGCAGTTTCTTAGAGATGTTCAAAATAATGAACTACATTTGTCAATATTCTGGTAGATTATTGAAGAAATTAACAAAAGATAAGTATTATATTTCGGTTATCGTCTCTCCCTCCCCCATGTCCCCTCCCCCCTCCTGGGAATAAGGGGGCCCCACCTGGTGAGAGAGAGTAATATATTCATGTTGCACCCTCCTGGGGAAAAGGGGGCTGAGAGAGGGAAAGGTTTCTACTGTTTTAGAGTGGGTCCTGATTAGCGTTCGCCTTCTGTGTTCTTTTTTCTTCCAGATCTGTTTAGGCTAACACCTATTCAGAAAAGATTTTTTTTTTATATTGAAAGTGAATAATGATATATTTCTGCCTATTCAACTTGAAAGATCCTGCTGTATCTATGTAATATTTGTATGTGTTGTTATGGTCCAAATCTAATTGCGGTCTTTTTTTTTCAGAGCTTGACACTTGTGGCTTTCTGCAGCACTTCTTTGGTTTCTCTTTCACTTGGTGGTTGCCGTGCTTTAATTTCTCTTGCGCTTAGGTGCCCATATCTTGAACAAGTATCTTTAGATGGTTGTGATCATCTTGAAGTAGCATCATTTTGCCCCGTAAGTGATCATCAACTCCTTCCTCTTTTCTATACATCATCTCTGGGTTTGAGACTGAGTTGTATGTTCACCTGCTGATTTTATGATTGTTAATTTGTTACACATGCATTTTTTTCTTTATTTATATCCAAGTGGTTTGATAAATGTGTGCTCTTATTCCAGGTTGGTCTTAGGTCACTTAATCTTGGTATATGCCCCAAAATGAATATGCTTCATATTGAAGCTCCACAAA</genome_strand>
        <mrna_strand>TTGCCCATTGCTTCAAAGAATCAATATAACTTCAAGTGCTCTCAAA..................................................................................................AAATTAGTTTTGCAGAAGCAGGAAAGCTTGACAACAATTGCATTACAGTGTCCGAATTTGCTAGAAGTAGACCTTACTGAGTGTGAATCGCTCACCAATTCTGTTTGTGAAGTTTTCAGTGATGGTGGTGGCTGTCCTGTGCTTAAATCCTTAGTTCTGGATAACTGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGACACTTGTGGCTTTCTGCAGCACTTCTTTGGTTTCTCTTTCACTTGGTGGTTGCCGTGCTTTAATTTCTCTTGCGCTTAGGTGCCCATATCTTGAACAAGTATCTTTAGATGGTTGTGATCATCTTGAAGTAGCATCATTTTGCCCC..................................................................................................................................................................GTTGGTCTTAGGTCACTTAATCTTGGTATATGCCCCAAAATGAATATGCTTCATATTGAAGCTCCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567586" ref_strand="+" ref_description="SGN-E567586 [11734]">
      <seq>ataacatcagcttccatggctgccatagcccatagctatatgttagaggttctggagcttgataattgcagtttattgacatcagtgtccttggatcttcctcgccttcagagcatcagactagtacattgtcgcaagtttattgaccttaacttgcattgtggaatgttatcgtcaattactgtttctaattgcccattgcttcatcgaatcaatataacttcaagtgcactcaaaaaattagttttgcagaagcaggaaagcttgacaacaattgcattacagtgtccgaatttgctagaagtagaccttactgagtgtgaatcgctcaccaattctatttgtgaagttttcagtgatggtggtggctgtcctgtgcttaaatccttagttctagataactgtggagagcttgacacttgtggctttctgcagcacttctttggtttctctttcacttggtggttgccgtgctttaatttctcttgcacttagttgccgatatcttgaacaagtctctttagatggttgtgatcatcttgaagtagcatcattttgcccaggttggtcttaggtcacttaatcttggtatatgccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="70931" stop="67694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70631" g_stop="70584" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70583" i_stop="70487" i_length="97">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70486" g_stop="70398" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="137" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70397" i_stop="70289" i_length="109">
            <donor d_prob="0.197" d_score="0.98"/>
            <acceptor a_prob="0.712" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70288" g_stop="70189" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="237" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70188" i_stop="70091" i_length="98">
            <donor d_prob="0.935" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70090" g_stop="69920" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="409" r_length="172" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69919" i_stop="68344" i_length="1576">
            <donor d_prob="0.947" d_score="0.94"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68343" g_stop="68191" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="563" r_length="154" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68190" i_stop="68029" i_length="162">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68028" g_stop="67993" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="599" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E567586" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70631" e_stop="70584"/>
          <exon e_start="70486" e_stop="70398"/>
          <exon e_start="70288" e_stop="70189"/>
          <exon e_start="70090" e_stop="69920"/>
          <exon e_start="68343" e_stop="68191"/>
          <exon e_start="68028" e_stop="67993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACATCAGCTTCCATGGCTGCCATAGCCCATAGCTATATGTTAGAGGTTTGTCTCTTTCCTCACCCTTTTCATACTGGTAGCCGTGCTGTAACCAGGAGTCCTTACATTCATATTGAACAGTGAATTTCACTTTTTTTTTCAGGTTCTGGAGCTTGATAATTGCAGTTTATTGACATCAGTGTCCTTGGATCTTCCTCGCCTTCAGAGCATTAGACTAGTACATTGTCGCAAGTATGATACAGGCTTTACAGTCTCCATATCCAGTCTCAAGGGAACTTCTTTCCGTCCCTTGATTGCCGTCACTCTTTTGTGCAGTAACCTACTGTTTATATTGAAACAGGTTTATTGACCTTAACTTGCATTGTGGAATGTTATCATCAATTACTGTTTCTAATTGCCCATTGCTTCAAAGAATCAATATAACTTCAAGTGCTCTCAAAGTAAGTGTATTCCTAGATGTTATATATTGTCATCTTATTTTATTGACTAGAATTATTCTATTCATTGAATAATATTTCTCTCCTTCATCATTCCACAGAAATTAGTTTTGCAGAAGCAGGAAAGCTTGACAACAATTGCATTACAGTGTCCGAATTTGCTAGAAGTAGACCTTACTGAGTGTGAATCGCTCACCAATTCTGTTTGTGAAGTTTTCAGTGATGGTGGTGGCTGTCCTGTGCTTAAATCCTTAGTTCTGGATAACTGT-GAGGTTGGCAATTTTAGTTCCTCATTGCTAACTTGTGCATTCTTGGTTGTTATTTTTCTAAACCTATCGATATATATGATCTCTTCTTAGTTTTGCTTGTCAACGGAAGGTGGTTCACTTAAGCCGAGTACATTTGTAAGAGTTTGTTTTTGTACTCATGTATATCAATGTGGTTATGGACCTATGATCATAGTGCCATTTTTGCTTTTCTTGTAACAGATACTGGTGATTCTTTTTTATGCATGTTTCCTAGTAAATAAATATAGTACTGAATTATGACAATCAATAATCAGGTATTTTAATTAGTAATCATGAAAGATGATGAAAGGAAAAAAGTATGATCCAAGTGTACTGACCGTTGTGTCATCTGGTTGTGCTTTTTTATTTGCTGTAAGCCTGGGAAGGCGTCAGCCTGGGAAGGCGTTCTACTGGGTGTGCTAAGGGCTCGTTTGATATGAGGGATAAGAGATTACTGATTCCAGGATTAGTTTTAGGATGAGTTTATCCCATGTTTGGTTGGGATAAAATCGAGGGATAACTTATCCCGGTATTGTAGTGTCATTCTTATCCCACATTGAGGATGGGATAAGAACCCTGGACAACTTGTTGCGAGACTCTCCTTCAGTAACTCAGAGAAGTTAAAAAATATTGAAATTGTTCAAGAGGTGAAGCGGGAAAGATGAAAAGTTCTAATTCCTTTGTTTTGGGATTAAGGATAGTGATTATGTATTCCTATATTTACCAGTAGTGTTTATTTTATGCTCACATTTTTAAATTGGCTTGAAGTATTTTTATCTTGTCAAAATATAACTATTAGGGTTAACGTCTTTCTTGGTATCATAAGCTCTTTGTTTCTTTCAACATTTTGATTAGATACATGGGAGTTCTTAAGGGAACGGTTTAAGCTGAACTATAACATGAGAACTATTACCCAGATGGAAGAAGAAAATAGTTCACCTTTTTTTTTCCTGATTCAATTAGAGCTGATGTCACACCATTTAAAGAAAATGTCAAAGCGGAATTTTCTTTTGAAGCTTGATGAAAATATGTACTACTCTTCCAATCAAGATTCCCTTTTATTTGATTTTTGGTGATCAAGAAAAGCAAGGCTGAATTAGGTTTGGGTTTGACATTGCAGTTTCTTAGAGATGTTCAAAATAATGAACTACATTTGTCAATATTCTGGTAGATTATTGAAGAAATTAACAAAAGATAAGTATTATATTTCGGTTATCGTCTCTCCCTCCCCCATGTCCCCTCCCCCCTCCTGGGAATAAGGGGGCCCCACCTGGTGAGAGAGAGTAATATATTCATGTTGCACCCTCCTGGGGAAAAGGGGGCTGAGAGAGGGAAAGGTTTCTACTGTTTTAGAGTGGGTCCTGATTAGCGTTCGCCTTCTGTGTTCTTTTTTCTTCCAGATCTGTTTAGGCTAACACCTATTCAGAAAAGATTTTTTTTTTATATTGAAAGTGAATAATGATATATTTCTGCCTATTCAACTTGAAAGATCCTGCTGTATCTATGTAATATTTGTATGTGTTGTTATGGTCCAAATCTAATTGCGGTCTTTTTTTTTCAGAGCTTGACACTTGTGGCTTTCTGCAGCACTTCTTTGGTTTCTCTTTCACTTGGTGGTTGCCGTGCTTTAATTTCTCTTGCGCTTAGGTGCCCATATCTTGAACAAGTATCTTTAGATGGTTGTGATCATCTTGAAGTAGCATCATTTTGCCC-CGTAAGTGATCATCAACTCCTTCCTCTTTTCTATACATCATCTCTGGGTTTGAGACTGAGTTGTATGTTCACCTGCTGATTTTATGATTGTTAATTTGTTACACATGCATTTTTTTCTTTATTTATATCCAAGTGGTTTGATAAATGTGTGCTCTTATTCCAGGTTGGTCTTAGGTCACTTAATCTTGGTATATGCCCC</genome_strand>
        <mrna_strand>ATAACATCAGCTTCCATGGCTGCCATAGCCCATAGCTATATGTTAGAG.................................................................................................GTTCTGGAGCTTGATAATTGCAGTTTATTGACATCAGTGTCCTTGGATCTTCCTCGCCTTCAGAGCATCAGACTAGTACATTGTCGCAA.............................................................................................................GTTTATTGACCTTAACTTGCATTGTGGAATGTTATCGTCAATTACTGTTTCTAATTGCCCATTGCTTCATCGAATCAATATAACTTCAAGTGCACTCAAA..................................................................................................AAATTAGTTTTGCAGAAGCAGGAAAGCTTGACAACAATTGCATTACAGTGTCCGAATTTGCTAGAAGTAGACCTTACTGAGTGTGAATCGCTCACCAATTCTATTTGTGAAGTTTTCAGTGATGGTGGTGGCTGTCCTGTGCTTAAATCCTTAGTTCTAGATAACTGTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGACACTTGTGGCTTTCTGCAGCACTTCTTTGGTTTCTCTTTCACTTGGTGGTTGCCGTGCTTTAATTTCTCTTGCACTTAGTTGCCGATATCTTGAACAAGTCTCTTTAGATGGTTGTGATCATCTTGAAGTAGCATCATTTTGCCCAG..................................................................................................................................................................GTTGGTCTTAGGTCACTTAATCTTGGTATATGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590387" ref_strand="+" ref_description="SGN-E590387 [43981]">
      <seq>ctgcagctagtgaagtgtcgtgtgcttcgagtttctatcagatgtccacaacttgaagacgttgtcacttaagcgcagtagcatgccacatgcggtgcttaattgccctcttttacatgaccttgatattgcttcatgtcacaaactttccgacgctgctattcgttcggctgctacagcatgccctcttttagagtctttggatatgtcaaattgttcatgtgtcagtgatgaaacactgcgtgatatagctcaaacttgtggaaatcttcgagttttggatgcttcatactgcccaaacatttctcttgagtctgtgaggctggttatgctgactgttctcaagcttcatagttgtgagggcataacatcagcttccatggctgccatagcccatagctatatgttagaggttctggagcttgataattgcagtttattgacatcagtgtccttggatcttcctcgccttcagagcatcagactagtacattgtcgcaagtttattgaccttaacttacattgtggaatgttatcatcaattactgtttctaattgcccattgcttcatcgaatcaatataacttcaagtgcactcaaaaaattagttttgcagaagcaggaaagcttgacaacaattgcattacagtgtccgaatttgctagaagtagaccttactgagtgtgaatcggtcaccaattctattgtgtgaagttttcagtgatggtggtggctgtcctgtgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="71460" stop="69646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71160" g_stop="71120" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71119" i_stop="71040" i_length="80">
            <donor d_prob="0.782" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71039" g_stop="70769" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="313" r_length="272" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70768" i_stop="70683" i_length="86">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.644" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70682" g_stop="70584" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="412" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70583" i_stop="70487" i_length="97">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70486" g_stop="70398" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="501" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70397" i_stop="70289" i_length="109">
            <donor d_prob="0.197" d_score="0.98"/>
            <acceptor a_prob="0.712" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70288" g_stop="70189" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="601" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70188" i_stop="70091" i_length="98">
            <donor d_prob="0.935" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70090" g_stop="69946" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="747" r_length="146" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E590387" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71160" e_stop="71120"/>
          <exon e_start="71039" e_stop="70769"/>
          <exon e_start="70682" e_stop="70584"/>
          <exon e_start="70486" e_stop="70398"/>
          <exon e_start="70288" e_stop="70189"/>
          <exon e_start="70090" e_stop="69946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGCTAGTGAAGTGTCGTGTGCTTCGAGTTTCTATCAGGTTGTGTAATGTTAGTCAACAATTTTAATTTGTTAAAGTAGTTAGCATCCAATTGTGCTCAATTGTTGTTATTCTTACAGATGTCCGCAACTTGAA-ACATTGTCACTGAAGCGCAGTAGCATGCCACATGCAGTGCTTAATTGCCCTCTTTTACATGACCTTGATATAGCTTCCTGTCACAAACTTTCCGACGCTGCTATTCGTTCGGCTGCCACCGCATGCCCTCTTTTAGAATCTTTGGATATGTCAAATTGTTCATGTGTCAGTGATGAAACACTGCGTGATATAGCTCAAACTTGTGGACATCTTCGAGTTTTGGATGCTTCATACTGCCCAAACATTTCTCTTGAGGTATATTCATAAGTATATTCATTAAAATTACGTAGTACCTGAAATTGACATAGTTGGTTTATACTAACACTTGTTACTTGTTGAAGTCTGTGAGGCTGGTTATGCTGACTGTTCTCAAGCTTCATAGTTGTGAGGGCATAACATCAGCTTCCATGGCTGCCATAGCCCATAGCTATATGTTAGAGGTTTGTCTCTTTCCTCACCCTTTTCATACTGGTAGCCGTGCTGTAACCAGGAGTCCTTACATTCATATTGAACAGTGAATTTCACTTTTTTTTTCAGGTTCTGGAGCTTGATAATTGCAGTTTATTGACATCAGTGTCCTTGGATCTTCCTCGCCTTCAGAGCATTAGACTAGTACATTGTCGCAAGTATGATACAGGCTTTACAGTCTCCATATCCAGTCTCAAGGGAACTTCTTTCCGTCCCTTGATTGCCGTCACTCTTTTGTGCAGTAACCTACTGTTTATATTGAAACAGGTTTATTGACCTTAACTTGCATTGTGGAATGTTATCATCAATTACTGTTTCTAATTGCCCATTGCTTCAAAGAATCAATATAACTTCAAGTGCTCTCAAAGTAAGTGTATTCCTAGATGTTATATATTGTCATCTTATTTTATTGACTAGAATTATTCTATTCATTGAATAATATTTCTCTCCTTCATCATTCCACAGAAATTAGTTTTGCAGAAGCAGGAAAGCTTGACAACAATTGCATTACAGTGTCCGAATTTGCTAGAAGTAGACCTTACTGAGTGTGAATCGCTCACCAATTCTGTT-TGTGAAGTTTTCAGTGATGGTGGTGGCTGTCCTGTGCTTA</genome_strand>
        <mrna_strand>CTGCAGCTAGTGAAGTGTCGTGTGCTTCGAGTTTCTATCAG................................................................................ATGTCCACAACTTGAAGACGTTGTCACTTAAGCGCAGTAGCATGCCACATGCGGTGCTTAATTGCCCTCTTTTACATGACCTTGATATTGCTTCATGTCACAAACTTTCCGACGCTGCTATTCGTTCGGCTGCTACAGCATGCCCTCTTTTAGAGTCTTTGGATATGTCAAATTGTTCATGTGTCAGTGATGAAACACTGCGTGATATAGCTCAAACTTGTGGAAATCTTCGAGTTTTGGATGCTTCATACTGCCCAAACATTTCTCTTGAG......................................................................................TCTGTGAGGCTGGTTATGCTGACTGTTCTCAAGCTTCATAGTTGTGAGGGCATAACATCAGCTTCCATGGCTGCCATAGCCCATAGCTATATGTTAGAG.................................................................................................GTTCTGGAGCTTGATAATTGCAGTTTATTGACATCAGTGTCCTTGGATCTTCCTCGCCTTCAGAGCATCAGACTAGTACATTGTCGCAA.............................................................................................................GTTTATTGACCTTAACTTACATTGTGGAATGTTATCATCAATTACTGTTTCTAATTGCCCATTGCTTCATCGAATCAATATAACTTCAAGTGCACTCAAA..................................................................................................AAATTAGTTTTGCAGAAGCAGGAAAGCTTGACAACAATTGCATTACAGTGTCCGAATTTGCTAGAAGTAGACCTTACTGAGTGTGAATCGGTCACCAATTCTATTGTGTGAAGTTTTCAGTGATGGTGGTGGCTGTCCTGTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210222" ref_strand="+" ref_description="SGN-E210222 [cLEC-40-L17]">
      <seq>cttctgcagctagtgaagtgtcgtgtgcttcgagtttctatcagatgtccgcaacttgaaacattgtcactgaagcgcagtagcatgccacatgcagtgcttaattgccctcttttacatgaccttgatatagcttcctgtcacaaactttccgacgctgctattcgttcggctgccaccgcatgccctcttttagaatctttggatatgtcaaattgttcatgtgtcagtgatgaaacactgcgtgatatagctcaaacttgtggacatcttcgagttttggatgcttcatactgcccaaacatttctcttgagtctgtgaggctggttatgctgactgttctcaagcttcatagttgtgagggcataacatcagcttccatggctgccatagcccatagctatatgttagaggttctggagcttgataattgcagtttattgacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="71463" stop="70151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71163" g_stop="71120" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71119" i_stop="71040" i_length="80">
            <donor d_prob="0.782" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71039" g_stop="70769" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="315" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70768" i_stop="70683" i_length="86">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.644" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70682" g_stop="70584" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="414" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70583" i_stop="70487" i_length="97">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70486" g_stop="70451" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="450" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E210222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71163" e_stop="71120"/>
          <exon e_start="71039" e_stop="70769"/>
          <exon e_start="70682" e_stop="70584"/>
          <exon e_start="70486" e_stop="70451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGCAGCTAGTGAAGTGTCGTGTGCTTCGAGTTTCTATCAGGTTGTGTAATGTTAGTCAACAATTTTAATTTGTTAAAGTAGTTAGCATCCAATTGTGCTCAATTGTTGTTATTCTTACAGATGTCCGCAACTTGAAACATTGTCACTGAAGCGCAGTAGCATGCCACATGCAGTGCTTAATTGCCCTCTTTTACATGACCTTGATATAGCTTCCTGTCACAAACTTTCCGACGCTGCTATTCGTTCGGCTGCCACCGCATGCCCTCTTTTAGAATCTTTGGATATGTCAAATTGTTCATGTGTCAGTGATGAAACACTGCGTGATATAGCTCAAACTTGTGGACATCTTCGAGTTTTGGATGCTTCATACTGCCCAAACATTTCTCTTGAGGTATATTCATAAGTATATTCATTAAAATTACGTAGTACCTGAAATTGACATAGTTGGTTTATACTAACACTTGTTACTTGTTGAAGTCTGTGAGGCTGGTTATGCTGACTGTTCTCAAGCTTCATAGTTGTGAGGGCATAACATCAGCTTCCATGGCTGCCATAGCCCATAGCTATATGTTAGAGGTTTGTCTCTTTCCTCACCCTTTTCATACTGGTAGCCGTGCTGTAACCAGGAGTCCTTACATTCATATTGAACAGTGAATTTCACTTTTTTTTTCAGGTTCTGGAGCTTGATAATTGCAGTTTATTGACATCA</genome_strand>
        <mrna_strand>CTTCTGCAGCTAGTGAAGTGTCGTGTGCTTCGAGTTTCTATCAG................................................................................ATGTCCGCAACTTGAAACATTGTCACTGAAGCGCAGTAGCATGCCACATGCAGTGCTTAATTGCCCTCTTTTACATGACCTTGATATAGCTTCCTGTCACAAACTTTCCGACGCTGCTATTCGTTCGGCTGCCACCGCATGCCCTCTTTTAGAATCTTTGGATATGTCAAATTGTTCATGTGTCAGTGATGAAACACTGCGTGATATAGCTCAAACTTGTGGACATCTTCGAGTTTTGGATGCTTCATACTGCCCAAACATTTCTCTTGAG......................................................................................TCTGTGAGGCTGGTTATGCTGACTGTTCTCAAGCTTCATAGTTGTGAGGGCATAACATCAGCTTCCATGGCTGCCATAGCCCATAGCTATATGTTAGAG.................................................................................................GTTCTGGAGCTTGATAATTGCAGTTTATTGACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467012" ref_strand="+" ref_description="SGN-E467012 [cPRO-26-F6]">
      <seq>aaatggcattcaagagataccaatttctcatgatagcttgcgtcttctgcagctagtgaagtgtcgtgtgcttcgagtttctatcagatgtccacaacttgaaacgttgtcacttaagcgcagtagcatgccacatgcggtgcttaattgccctcttttacatgaccttgatattgcttcatgtcacaaactttccgacgctgctattcgttcagctgccacagcatgccctcttttagagtctttggatatgtcaaattgttcatgtgtcagtgatgaaacactgcgtgatatagctcaaacttgtggaaatcttcgagttttggatgcttcatactgcccaaacatttctcttgagtctgtgaggctggttatgttgactgttctcaagcttcataggtgtgaaggcataacatcagcttccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="71506" stop="70314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71206" g_stop="71120" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71119" i_stop="71040" i_length="80">
            <donor d_prob="0.782" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71039" g_stop="70769" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="358" r_length="271" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70768" i_stop="70683" i_length="86">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.644" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70682" g_stop="70614" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="427" r_length="69" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E467012" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71206" e_stop="71120"/>
          <exon e_start="71039" e_stop="70769"/>
          <exon e_start="70682" e_stop="70614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCATTCAAGAGATACCAATTTCTCATGATAGCTTGCGTCTTCTGCAGCTAGTGAAGTGTCGTGTGCTTCGAGTTTCTATCAGGTTGTGTAATGTTAGTCAACAATTTTAATTTGTTAAAGTAGTTAGCATCCAATTGTGCTCAATTGTTGTTATTCTTACAGATGTCCGCAACTTGAAACATTGTCACTGAAGCGCAGTAGCATGCCACATGCAGTGCTTAATTGCCCTCTTTTACATGACCTTGATATAGCTTCCTGTCACAAACTTTCCGACGCTGCTATTCGTTCGGCTGCCACCGCATGCCCTCTTTTAGAATCTTTGGATATGTCAAATTGTTCATGTGTCAGTGATGAAACACTGCGTGATATAGCTCAAACTTGTGGACATCTTCGAGTTTTGGATGCTTCATACTGCCCAAACATTTCTCTTGAGGTATATTCATAAGTATATTCATTAAAATTACGTAGTACCTGAAATTGACATAGTTGGTTTATACTAACACTTGTTACTTGTTGAAGTCTGTGAGGCTGGTTATGCTGACTGTTCTCAAGCTTCATAGTTGTGAGGGCATAACATCAGCTTCCATG</genome_strand>
        <mrna_strand>AAATGGCATTCAAGAGATACCAATTTCTCATGATAGCTTGCGTCTTCTGCAGCTAGTGAAGTGTCGTGTGCTTCGAGTTTCTATCAG................................................................................ATGTCCACAACTTGAAACGTTGTCACTTAAGCGCAGTAGCATGCCACATGCGGTGCTTAATTGCCCTCTTTTACATGACCTTGATATTGCTTCATGTCACAAACTTTCCGACGCTGCTATTCGTTCAGCTGCCACAGCATGCCCTCTTTTAGAGTCTTTGGATATGTCAAATTGTTCATGTGTCAGTGATGAAACACTGCGTGATATAGCTCAAACTTGTGGAAATCTTCGAGTTTTGGATGCTTCATACTGCCCAAACATTTCTCTTGAG......................................................................................TCTGTGAGGCTGGTTATGTTGACTGTTCTCAAGCTTCATAGGTGTGAAGGCATAACATCAGCTTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395864" ref_strand="+" ref_description="SGN-E395864 [TUS-18-G17]">
      <seq>tcttctgcagctagtgaagtgtcgtgtgcttcgagtttctatcagatgtccgcaacttggaacattgtcactgaatcgcagtagcatgccacatgcagtgcttaattgccctcttttacatgaccttgatatagcttcctgtcacaaactttccgacgctgctattcgttcggctgccaccgcatgccctcttttagaatctttggatatgtcttattgttcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="71464" stop="70559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71164" g_stop="71120" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71119" i_stop="71040" i_length="80">
            <donor d_prob="0.782" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71039" g_stop="70859" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="226" r_length="181" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E395864" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71164" e_stop="71120"/>
          <exon e_start="71039" e_stop="70859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTGCAGCTAGTGAAGTGTCGTGTGCTTCGAGTTTCTATCAGGTTGTGTAATGTTAGTCAACAATTTTAATTTGTTAAAGTAGTTAGCATCCAATTGTGCTCAATTGTTGTTATTCTTACAGATGTCCGCAACTTGAAACATTGTCACTGAAGCGCAGTAGCATGCCACATGCAGTGCTTAATTGCCCTCTTTTACATGACCTTGATATAGCTTCCTGTCACAAACTTTCCGACGCTGCTATTCGTTCGGCTGCCACCGCATGCCCTCTTTTAGAATCTTTGGATATGTCAAATTGTTCATGT</genome_strand>
        <mrna_strand>TCTTCTGCAGCTAGTGAAGTGTCGTGTGCTTCGAGTTTCTATCAG................................................................................ATGTCCGCAACTTGGAACATTGTCACTGAATCGCAGTAGCATGCCACATGCAGTGCTTAATTGCCCTCTTTTACATGACCTTGATATAGCTTCCTGTCACAAACTTTCCGACGCTGCTATTCGTTCGGCTGCCACCGCATGCCCTCTTTTAGAATCTTTGGATATGTCTTATTGTTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337889" ref_strand="+" ref_description="SGN-E337889 [cTOE-14-K4]">
      <seq>aagaatgaggagattgattttgatagtaactggacatccagtacagtggaggtgaagaatgaaagttatagtggtgagaaaatgttggatgttaatttgaatttgggtttgagtggagaggcttcatcctcaacagtgctgaaagaggattctgatccttttacctgtagtaaaaggcccaaagttaactccttttcgctggattgggacaaccacttgttgcaggaaaccagttacctatgtccaatgaacgagggtggtggagatgtgagtttatctaacttacttggtgcaacagatgatgaggggaaagattctaaaatggaggatttagatgtgcggatggatcttactgatgacttgttgcatatggtgttctcctttttggaccatattgatctttgtcgagctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="73018" stop="71393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72718" g_stop="72519" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72518" i_stop="72008" i_length="511">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72007" g_stop="71836" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="372" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71835" i_stop="71735" i_length="101">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71734" g_stop="71693" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="414" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E337889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72718" e_stop="72519"/>
          <exon e_start="72007" e_stop="71836"/>
          <exon e_start="71734" e_stop="71693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGAGGAGATTGATTTTGATAGTAACTGGACATCCAGTACAGTGGAGGTGAAGAATGAAAGTTATAGTGGTGAGAAAATGTTGGATGTTAATTTGAATTTGGGTTTGAGTGGAGAGGCTTCATCCTCAACAGTGCTGAAAGAGGATTCTGATCCTTTTACCTGTAGTAAAAGGCCCAAAGTTAACTCCTTTTCGCTGTAAGACCTGCTACTGCACCTTCATTTACAATATTGCACCTTCATTTACAATATTACACCTTCATTTACAATTTTTTTTTTAAATTAGTCAAATTCTATTGAATATTAGAATGAAATTGGCCATAGTAGAGAACTAACACAGAATTCATTTAAGCAACCCAAGCCTAATTACAAGGATCAGTTGTTGTTATCACTACTTAAAGACTTTCAAGAGTCCTGTAATTATTTCTCGTGTAGTACAGTTTTACATGTGGTCAAGAGTGTTGCACAATTCACTGAGTTTTGGAGAAAGTACATTCTTACATAATTCTTTTAGAGAAAAGAAAATAGTAATATTAGCATGGAGTAGAATTATTTCTAAAGCTAGTTATATTTGGAATTTCAAAAGCATAGCCTAATATATGTTACTCTTTAATTTGATATAAACAAATTGTCTTTTGAGTTTTGAAGTAAGCCCTAAATGTAGGCCAACAACTCAAAAATGAAGACTGGTTGATTAATATTCTTGCAGGGATTGGGACAACCACTTGTTGCAGGAAACCAGTTACCTATGTCCAATGAACGAGGGTGGTGGAGATGTGAGTTTATCTAACTTACTTGGTGCAACAGATGATGAGGGGAAAGATTCTAAAATGGAGGATTTAGATGTGCGGATGGATCTTACTGATGACTTGTTGCATATGGTATTTACTAGTTGCCACATCCACTCCTTCTGAGTTGCTTAATCAATAAGTGTTTATACCAAGTTTCTGATTAATGGAATATATGCCTCATCTGTTGCCAGGTGTTCTCCTTTTTGGACCATATTGATCTTTGTCGAGCTGCA</genome_strand>
        <mrna_strand>AAGAATGAGGAGATTGATTTTGATAGTAACTGGACATCCAGTACAGTGGAGGTGAAGAATGAAAGTTATAGTGGTGAGAAAATGTTGGATGTTAATTTGAATTTGGGTTTGAGTGGAGAGGCTTCATCCTCAACAGTGCTGAAAGAGGATTCTGATCCTTTTACCTGTAGTAAAAGGCCCAAAGTTAACTCCTTTTCGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGGGACAACCACTTGTTGCAGGAAACCAGTTACCTATGTCCAATGAACGAGGGTGGTGGAGATGTGAGTTTATCTAACTTACTTGGTGCAACAGATGATGAGGGGAAAGATTCTAAAATGGAGGATTTAGATGTGCGGATGGATCTTACTGATGACTTGTTGCATATG.....................................................................................................GTGTTCTCCTTTTTGGACCATATTGATCTTTGTCGAGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330489" ref_strand="+" ref_description="SGN-E330489 [cTOD-4-H4]">
      <seq>ctcactgcacttctcatacagttttctttctctctctatgcatacacctgtatcgattgttttctgctactccattctccggtttgtcgaaaattcttgaacaagaatttgttagactctgtgaactgtgtaatttgtgtgctttgtcgtgaaaaaggagtcgtttggtgtaatttgttgaaaagttaggttttttggggggaaagttttagatcgtgacctagggtttctgaagatcagaaattgataaaaaaaattgggtctattctttatttttcttgctttcttagtgtggtgtgagtgagtgtatgaggatttggtgttgtttatgttttggagaagaagaagataataagaagggctacaagagtatgagggacccgattttggggaataacggtgacgaatctccagatgagaattcggcatttgactggaggaatgtttttgaaggtgtcaatgttgcagcagtggtgagtccacaagcgggcgctgtaggtgatcttggtgttcccaagaatgaggagattgattttgatagtaactggacatccagtacagtggaggtgaagaatgaaagttatagtggtgagaaaatgttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="73533" stop="72329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73233" g_stop="72629" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E330489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73233" e_stop="72629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTGCACTTCTCATACAGTTTTCTTTCTCTCTCTATGCATACACCTGTATCGATTGTTTTCTGCTACTCCATTCTCCGGTTTGTCGAAAATTCTTGAACAAGAATTTGTTAGACTCTGTGAACTGTGTAATTTGTGTGCTTTGTCGTGAAAAAGGAGTCGTTTGGTGTAATTTGTTGAAAAGTTAGGTTTTTTGGGGGGAAAGTTTTAGATCGTGACCTAGGGTTTCTGAAGATCAGAAATTGATAAAAAAAATTGGGTCTATTCTTTATTTTTCTTGCTTTCTTAGTGTGGTGTGAGTGAGTGTATGAGGATTTGGTGTTGTTTATGTTTTGGAGAAGAAGAAGATAATAAGAAGGGCTACAAGAGTATGAGGGACCCGATTTTGGGGAATAACGGTGACGAATCTCCAGATGAGAATTCGGCATTTGACTGGAGGAATGTTTTTGAAGGTGTCAATGTTGCAGCAGTGGTGAGTCCACAAGCGGGCGCTGTAGGTGATCTTGGTGTTCCCAAGAATGAGGAGATTGATTTTGATAGTAACTGGACATCCAGTACAGTGGAGGTGAAGAATGAAAGTTATAGTGGTGAGAAAATGTTGGAT</genome_strand>
        <mrna_strand>CTCACTGCACTTCTCATACAGTTTTCTTTCTCTCTCTATGCATACACCTGTATCGATTGTTTTCTGCTACTCCATTCTCCGGTTTGTCGAAAATTCTTGAACAAGAATTTGTTAGACTCTGTGAACTGTGTAATTTGTGTGCTTTGTCGTGAAAAAGGAGTCGTTTGGTGTAATTTGTTGAAAAGTTAGGTTTTTTGGGGGGAAAGTTTTAGATCGTGACCTAGGGTTTCTGAAGATCAGAAATTGATAAAAAAAATTGGGTCTATTCTTTATTTTTCTTGCTTTCTTAGTGTGGTGTGAGTGAGTGTATGAGGATTTGGTGTTGTTTATGTTTTGGAGAAGAAGAAGATAATAAGAAGGGCTACAAGAGTATGAGGGACCCGATTTTGGGGAATAACGGTGACGAATCTCCAGATGAGAATTCGGCATTTGACTGGAGGAATGTTTTTGAAGGTGTCAATGTTGCAGCAGTGGTGAGTCCACAAGCGGGCGCTGTAGGTGATCTTGGTGTTCCCAAGAATGAGGAGATTGATTTTGATAGTAACTGGACATCCAGTACAGTGGAGGTGAAGAATGAAAGTTATAGTGGTGAGAAAATGTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209835" ref_strand="+" ref_description="SGN-E209835 [cLEC-52-G1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="111948" stop="113128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112248" g_stop="112874" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E209835" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112248" e_stop="112874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTATAATAGTTGTGTATGTTGATGACTTGAACATCATTGGCACTCGTAAAGAGCTGTTAGAAGTTGTTGGGTGTCTGAAAATAGAATTTAAAATGAAAGATCTTGGCAAGATAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAATATATTAAAGCATTTTTACATGGATAAGTCACATCCATTGAGTACTCCAATGGTGGTAAGATTGTTTTACATCAGTACAGATCCATTTCGATCTCAAGAGAAGAATGAAGAGCTTGTTGGTGATGAAACTCCTTACATTAGTGAG-TCGGGGCACTAATGTACCTTGCTAACAATACTCGATCAGATATCTGTTTTGCAGTAATTCTAGTGGAAAGATTTAGTTCCTCCTCAACAAGAAGACATTGGAATAGTGTTAAACACGTACTTCGATATCTTTTTGAGGGACGATGGACATGGGTTTATTCTATTCCAATGAATACAAGTCAGAACTGATTGGTTACGCAGATGTAAGGTATTTATCTGATCCGCATAAAGCTCGATCAAAAACA-ACTATTTG-TTAAATGTGGAGATACGACAATATCTTGTCGATCAATG</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATC--TTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209830" ref_strand="+" ref_description="SGN-E209830 [cLEC-52-E1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatgcaaatcagaactgattggttacgcagatgcaaggtatttatcagatccgcataaagcccgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="111948" stop="113124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112248" g_stop="112824" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E209830" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112248" e_stop="112824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTATAATAGTTGTGTATGTTGATGACTTGAACATCATTGGCACTCGTAAAGAGCTGTTAGAAGTTGTTGGGTGTCTGAAAATAGAATTTAAAATGAAAGATCTTGGCAAGATAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAATATATTAAAGCATTTTTACATGGATAAGTCACATCCATTGAGTACTCCAATGGTGGTAAGATTGTTTTACATCAGTACAGATCCATTTCGATCTCAAGAGAAGAATGAAGAGCTTGTTGGTGATGAAACTCCTTACATTAGTGAG-TCGGGGCACTAATGTACCTTGCTAACAATACTCGATCAGATATCTGTTTTGCAGTAATTCTAGTGGAAAGATTTAGTTCCTCCTCAACAAGAAGACATTGGAATAGTGTTAAACACGTACTTCGATATCTTTTTGAGGGACGATGGACATGGGTTTATTCTATTCCAATGAATACAAGTCAGAACTGATTGGTTACGCAGATGTAAGGTATTTATCTGATCCGCATAAAGCTCGATCAAA</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATC--TTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATGCAAATCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCAGATCCGCATAAAGCCCGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211563" ref_strand="+" ref_description="SGN-E211563 [cLEC-67-I7]">
      <seq>ataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccataatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatgggtgagatagaagtncaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcancgtttgagaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="112163" stop="113525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112463" g_stop="113225" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E211563" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112463" e_stop="113225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGTCACATCCATTGAGTACTCCAATGGTGGTAAGATTGTTTTACATCAGTACAGATCCATTTCGATCTCAAGAGAAGAATGAAGAGCTTGTTGGTGATGAAACTCCTTACATTAGTGAG-TCGGGGCACTAATGTACCTTGCTAACAATACTCGATCAGATATCTGTTTTGCAGTAATTCTAGTGGAAAGATTTAGTTCCTCCTCAACAAGAAGACATTGGAATAGTGTTAAACACGTACTTCGATATCTTTTTGAGGGACGATGGACATGGGTTTATTCTATTCCAATGAATACAAGTCAGAACTGATTGGTTACGCAGATGTAAGGTATTTATCTGATCCGCATAAAGCTCGATCAAAAACA-ACTATTTG-TTAAATGTGGAGATACGACAATATCTTGTCGATCAATGAAGCAAACATTGGTATCCACTTCTTCAAATCATGCAGAAATAACAGTCATCCATGAAGCAAGTCGAGACTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAGAGAATATACCAACCACAATGTACGAAGATAATGTTTCATGTATAGCTCAATTAAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATTTAACCATAGTTCTTTTTCATGCTTGATCTTCAACAAAAT-GGTGAGATAGAAGTTCAACAAATTCATTCAAGTGATAATCTTGTTGATTTATTCACTAAGGCATCGCCAACATCAATGTTTGAGAAGTTG</genome_strand>
        <mrna_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATC--TTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCATAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGGTGAGATAGAAGTNCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCANCGTTTGAGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201786" ref_strand="+" ref_description="SGN-E201786 [cLEC-11-H5]">
      <seq>tggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccacccttattgtccgaagataatgctgcatgtatagctcaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="112190" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112490" g_stop="113059" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E201786" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112490" e_stop="113059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTAAGATTGTTTTACATCAGTACAGATCCATTTCGATCTCAAGAGAAGAATGAAGAGCTTGTTGGTGATGAAACTCCTTACATTAGTGAG-TCGGGGCACTAATGTACCTTGCTAACAATACTCGATCAGATATCTGTTTTGCAGTAATTCTAGTGGAAAGATTTAGTTCCTCCTCAACAAGAAGACATTGGAATAGTGTTAAACACGTACTTCGATATCTTTTTGAGGGACGATGGACATGGGTTTATTCTATTCCAATGAATACAAGTCAGAACTGATTGGTTACGCAGATGTAAGGTATTTATCTGATCCGCATAAAGCTCGATCAAAAACA-ACTATTTG-TTAAATGTGGAGATACGACAATATCTTGTCGATCAATGAAGCAAACATTGGTATCCACTTCTTCAAATCATGCAGAAATAACAGTCATCCATGAAGCAAGTCGAGACTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAGAGAATATACCAACCACAATGTACGAAGATAATGTTTCATGTATAGCTCAATTAAA</genome_strand>
        <mrna_strand>TGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATC--TTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCACCCTTATTGTCCGAAGATAATGCTGCATGTATAGCTCAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200850" ref_strand="+" ref_description="SGN-E200850 [cLEC-5-I1]">
      <seq>tttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgcacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatctttaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="112530" stop="113491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112795" g_stop="113191" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E200850" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112795" e_stop="113191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTGATCCGCATAAAGCTCGATCAAAAACA-ACTATTTG-TTAAATGTGGAGATACGACAATATCTTGTCGATCAATGAAGCAAACATTGGTATCCACTTCTTCAAATCATGCAGAAATAACAGTCATCCATGAAGCAAGTCGAGACTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAGAGAATATACCAACCACAATGTACGAAGATAATGTTTCATGTATAGCTCAATTAAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATTTAACCATAGTTCTTTTTCATGCTTGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCATTCAAGTGATAATCTTGTTGATTTATTCAC</genome_strand>
        <mrna_strand>TTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGCACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTTAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351886" ref_strand="+" ref_description="SGN-E351886 [cTOS-8-D9]">
      <seq>ggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcaacgtttgagaagttgagatacaagattggaatgcgccgtctccaagatatcaagtaaagttttcatcagggggagtgaaatacgcgttgtactcttttccttaactatgggtttgtcccaagttgggttttcctggtaagggttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="+" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="112679" stop="113658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112979" g_stop="113358" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="+" ref_id="SGN-E351886" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112979" e_stop="113358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGTGTGGTTTTTCTTTGAAAGAGAATATACCAACCACAATGTACGAAGATAATGTTTCATGTATAGCTCAATTAAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATTTAACCATAGTTCTTTTTCATGCTTGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCATTCAAGTGATAATCTTGTTGATTTATTCACTAAGGCATCGCCAACATCAATGTTTGAGAAGTTGATATACAAGATTGGAATGCGCCATTTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGTGAAATATGTGTTGTACTC-TTTCCTTAACTATGGTTTTGTCCCAAGTTGGGTTTTTCTGGTAAGGTTTTTAAT</genome_strand>
        <mrna_strand>GGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCAACGTTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCAAGATATCAAGTAAAGTTTTCATCAGGGGGAGTGAAATACGCGTTGTACTCTTTTCCTTAACTATGGGTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGGTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243101" ref_strand="+" ref_description="SGN-E243101 [cLEE-2-C1]">
      <seq>caaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaagaatagttcaacaaattatatatccgccataacaagctcaatattaatcaatcacaagttctgcagaaaggcaataagaagatcgagaaaatacgatatcaagttcactaatgataagtgtgtaatgcaatggaatgcaatgtcaagtataatgatgcatgtctgacctagtgatatacacccgctgtctctcagtccgggacccttgggggacatatctgtccatgcatctgtcgcggcgcacgacacgatcctcgataatagtaaccatcacggcgcgcgatacgttcctcgaaatatagtatccatcgcggcgcgcgatacgtccctcgaaatggtacatcctcttaagtacccattatttctcaatgcacataacacttgccacaaccaatgcctcagaataatgcagatgacaagttcacacatataatgaggagatgaccattttcataacatcctacagttcacaaccacacaaacatcaagttacatcaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="127436" stop="126325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127136" g_stop="126625" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="557" r_length="512" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E243101" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127136" e_stop="126625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACAACAACACTTAGACAAATTAAATATACGCAATAACAAGCTCAATATTGATCAATCACAAGTTCTGCAGAAAGGCAATCAGAAGATCAGCAAAACACAATATTAAGTTCACTAATGATAAGTATGTGCAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATTTGTCGCGGCGCACGACACGACCCTCGATAATTGTAACCATCGCGGCGCGCGATACG-T-CTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACATGTCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACAAATAATGAGAAGATGACCATTTTCATAACATCGCACAGTTCACAACCACACAAACATGAAGTTACATCAACAATGA</genome_strand>
        <mrna_strand>CTCAACAAGAATAGTTCAACAAATTATATATCCGCCATAACAAGCTCAATATTAATCAATCACAAGTTCTGCAGAAAGGCAATAAGAAGATCGAGAAAATACGATATCAAGTTCACTAATGATAAG--TGTGTAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATATACACCCGCTGTCTCTCAGTCCGGGACCCTTGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGATCCTCGATAATAGTAACCATCACGGCGCGCGATACGTTCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCCTACAGTTCACAACCACACAAACATCAAGTTACATCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354665" ref_strand="+" ref_description="SGN-E354665 [cTOS-17-P16]">
      <seq>gtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgttatgatgttatctttggtcttgagaactactgcactagctggcttgtacttcctattttttttcttttttgactgctgaatactaggttacatactgaaccattctgctctagtttttggaaaaagttttgttggaacattttttttcaggtaaacaggtttcttacaaataaggaaaatttattactttgctagtagagaacaatttccaccagtggaaattcttcacatggtgtcttttcacgtcttcttaaaaacatttcatccttatcaccccccttccacttcttatggtatatgtttatattatggtatatgtttatattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="130100" stop="129023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129800" g_stop="129322" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E354665" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129800" e_stop="129322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAGGTAAACAGGTTTCTTACAAATAAGGAAAATTTATTACTTTGCTAGTAGAGAACAATTTCCACCAGTGGAAATTCTTCACATGGTGTCTTTTCACGTCTTCTTAAAAACATTTCATCCTTATCACCCCCCTTCCACTTCTTATGGTATATGTTTATATTATGGTATATGTTTATATTATATTATATATATAT</genome_strand>
        <mrna_strand>GTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAGGTAAACAGGTTTCTTACAAATAAGGAAAATTTATTACTTTGCTAGTAGAGAACAATTTCCACCAGTGGAAATTCTTCACATGGTGTCTTTTCACGTCTTCTTAAAAACATTTCATCCTTATCACCCCCCTTCCACTTCTTATGGTATATGTTTATATTATGGTATATGTTTATATTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694184" ref_strand="+" ref_description="SGN-E694184 [LH_Ea03E06](-)">
      <seq>ggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagcttcgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttttggccaacctgttaaagaatacattgatgctgctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaagtcaagatcatgcttgactgggatcctaaaggtaaacaagggcctatgaccccattgccagatttggtgaccattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgttatgatgttatctttggtcttgagaactactgcactagctggcttgtactttctatttattttctttttttgaccgctgaatactaggttacatagtgaaccattctgctctagtttttggaaaaagttttgttggaacatttttttcaggtaaacaggtttcttccaaataaggaaaattaatttactttgctagtagagaacaattttcaccagtggaaattcttcacatggtgtctttttcaatcttgttaaaaacatttcatccctatcaccccactccacttcttatggtatatgtttagattatattataaatggatttataggaaaatatggtgttcttatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131402" stop="129024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131102" g_stop="131055" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="103" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="235" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129370" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="715" r_length="480" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="773" polyA_stop="786"/>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E694184" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131102" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTC-TTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAGGTAAACAGGTTTCTTACAAATAAGGAAAATTTA-TTACTTTGCTAGTAGAGAACAATTTCCACCAGTGGAAATTCTTCACATGGTGTCTTTTCACGTCTTCTTAAAAACATTTCATCCTTATCACCCCCCTTCCACTTCTTATG</genome_strand>
        <mrna_strand>GGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTTCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTTTGGCCAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACCATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTTCTATTTATTTTCTTTTTTTGACCGCTGAATACTAGGTTACATAGTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACA-TTTTTTTCAGGTAAACAGGTTTCTTCCAAATAAGGAAAATTAATTTACTTTGCTAGTAGAGAACAATTTTCACCAGTGGAAATTCTTCACATGGTGTCTTTTTCAATCTTGTTAAAAACATTTCATCCCTATCACCCCAC-TCCACTTCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589902" ref_strand="-" ref_description="SGN-E589902 [43486]">
      <seq>cttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgttacttaggcagggtgtgctcggtatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgcaatcgaggttcttcctgtggcataacctgtgttatgatgttatctttggtcttgagaactactgcgctagctggcttgtactttttaattattttcttttttgactgctgaatactaggttacatagtgaaccattctgctctagtttttgcaaaaagttttgttgaacattttttttcaagtaaacagttttcttacaaataaggaaaattactttgctagtagagaagaagttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131454" stop="129153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131155" g_stop="131055" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="156" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="288" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129453" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="677" r_length="389" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E589902" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589902" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131155" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAGGTAAACAGGTTTCTTACAAATAAGGAAAATTTATTACTTTGCTAGTAGAGAACAATTTCC</genome_strand>
        <mrna_strand>CTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGTTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCAATCGAGGTTCTTCCTGTGGCAT---AACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCGCTAGCTGGCTTGTACTTTTTAATTATTTTCTTTTTTGACTGCTGAATACTAGGTTACATAGTGAACCATTCTGCTCTAGTTTTTGCAAAAAGTTTTGTT-GAACATTTTTTTTCAAGTAAACAGTTTTCTTACAAATAAGG-AAA---ATTACTTTGCTAGTAGAGAAGAAGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234017" ref_strand="+" ref_description="SGN-E234017 [cLEL-8-E5](-)">
      <seq>gacaacctgtaaagaatacattgatgctgctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaagtcaagatcatgcttgactgggatcctaaaggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgttatgatgttatctttggtcttgagaactactgcactagctggcttgtacttcctattttttttcttttttgactgctgaatactaggttacatactgaaccattctgctctagtttttggaaaaagttttgttggaacattttttttcaggtaaacaggtttcttacaaataaggaaaatttattactttgctagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="130312" stop="129158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130012" g_stop="129957" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129849" g_stop="129469" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="436" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="456"/>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E234017" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130012" e_stop="129957"/>
          <exon e_start="129849" e_stop="129469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAGGTAAACAGGTTTCTTACAAATAAGGAAAATTTATTACTTTGCTA</genome_strand>
        <mrna_strand>GACAACCTG-TAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAGGTAAACAGGTTTCTTACAAATAAGGAAAATTTATTACTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356643" ref_strand="+" ref_description="SGN-E356643 [cTOS-21-J12]">
      <seq>tgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaagtcaagatcatgcttgactgggatcctaaaggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgttatgatgttatctttggtcttgagaactactgcactagctggcttgtacttcctattttttttcttttttgactgctgaatactaggttacatactgaaccattctgctctagtttttggaaaaagttttgttggaacattttttttcaggtaaacaggtttcttacaaataaggaaaatttattaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131391" stop="129177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131091" g_stop="131055" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="92" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="224" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129477" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="597" r_length="373" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E356643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131091" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAGGTAAACAGGTTTCTTACAAATAAGGAAAATTTATTA</genome_strand>
        <mrna_strand>TGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAGGTAAACAGGTTTCTTACAAATAAGGAAAATTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558064" ref_strand="-" ref_description="SGN-E558064 [16961]">
      <seq>cattgctcagccagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggacccaagggatgcgaggtgattgttagtggaaagcttcgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgctcggcatcaaagtaaagatcatgcttgactgggatcctaagggtaaaccaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttattcctcctcctatgatagctgctcccgcaatcgaggttcttcctgtggcataacctgtgttatgatgttatctttggtcttgagaactactgcgctagctggcttgtactttttatttattttcttttttgactgctgaatactaggttacatagtgaaccattctgctctagtttttggaaaaagttttgttgaacatttttttcaagtaaacaggtttcttacaaataaggaaaattactttgctagtagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131411" stop="129158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131111" g_stop="131055" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="112" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="244" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129481" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="609" r_length="365" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="620" polyA_stop="636"/>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E558064" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558064" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131111" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAA-CAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAGGTAAACAGGTTTCTTACAAATAAGGAAAATTT</genome_strand>
        <mrna_strand>CATTGCTCAGCCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGACCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTTCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGCATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACCAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTATTCCTCCTCCTATGATAGCTGCTCCCGCAATCGAGGTTCTTCCTGTGGCAT---AACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCGCTAGCTGGCTTGTACTTTTTATTTATTTTCTTTTTTGACTGCTGAATACTAGGTTACATAGTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTT-GAACA-TTTTTTTCAAGTAAACAGGTTTCTTACAAATAAGGAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371752" ref_strand="+" ref_description="SGN-E371752 [TUS-30-I21](-)">
      <seq>ccccattgccagatttggtgactattcatccacccaagaagaaagaagagtttgttgttcctcctcctatgatagctgctcccgccatggaggttcttcctgtggcataaaaacctgtgttatgatgttatctttggtctttagaactaaagcactagctggcttgtacttcctattttttttcttttttgactgatgaatatataggttacatactgaaccattctgctctagtttttggaaaaagttttgttggaacattttttttcaggtaaacaggtttctttctaataaagaaaatttattcaaaaaaaactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="130082" stop="129178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129782" g_stop="129481" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="318" polyA_stop="330"/>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E371752" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129782" e_stop="129481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATA-CTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAGGTAAACAGGTTTCTTACAAATAAGGAAAATTT</genome_strand>
        <mrna_strand>CCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGAAGAAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATGGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTTAGAACTAAAGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGATGAATATATAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAGGTAAACAGGTTTCTTTCTAATAAAGAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739741" ref_strand="+" ref_description="SGN-E739741 [LC18CG01]">
      <seq>ctcatttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggagaatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaagtcaagatcatgcttgactgggatcctaaaggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgttatgatgttatctttggtcttgagaactactgcactagctggcttgtacttcctattttttttcttttttgactgctgaatactaggttacatactgaaccattctgctctagtttttggaaaaagttttgttggaacatttttttcaagtaaacaggtttcttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132431" g_stop="132344" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="236" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="408" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="463" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="595" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129486" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="958" r_length="363" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E739741" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>959</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132431" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAGGTAAACAGGTTTCTTACAAATAAGGAA</genome_strand>
        <mrna_strand>CTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGAATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACA-TTTTTTTCAAGTAAACAGGTTTCTTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571431" ref_strand="+" ref_description="SGN-E571431 [13482]">
      <seq>ggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgttacttaggcagggtgtgctcggtatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgcaatcgaggttcttcctgtggcataacctgtgttatgatgttatctttggtcttgagaactactgcgctagctggcttgtactttttaattattttcttttttgactgctgaatactaggttacatagtgaaccattctgctctagtttttggaaaaagtttagttgaacatttnttttcaagtaaacagtttgcttacaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131371" stop="129190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131071" g_stop="131055" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="72" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="204" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129490" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="560" r_length="356" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E571431" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131071" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAGGTAAACAGGTTTCTTACAAATAA</genome_strand>
        <mrna_strand>GGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGTTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCAATCGAGGTTCTTCCTGTGGCAT---AACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCGCTAGCTGGCTTGTACTTTTTAATTATTTTCTTTTTTGACTGCTGAATACTAGGTTACATAGTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTAGTT-GAACATTTNTTTTCAAGTAAACAGTTTGCTTACAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314460" ref_strand="-" ref_description="SGN-E314460 [cTOB-1-G15]">
      <seq>ctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaagtcaagatcatgcttgactgggatcctaaaggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgttatgatgttatctttggtcttgagaactactgcactagctggcttgtacttcctattttttttcttttttgactgctgaatactaggttacatactgaaccattctgctctagtttttggaaaaagttttgttggaacattttttttcaggccaaaccacacaaaaaaaactcgagactaaatctcttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131419" stop="129208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131119" g_stop="131055" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="120" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="252" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129513" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="589" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E314460" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314460" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131119" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAG</genome_strand>
        <mrna_strand>CTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587384" ref_strand="+" ref_description="SGN-E587384 [78500]">
      <seq>gtgctacttaggcagggtgtgctcggcatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttattcctcctcctatgatagctgctcccgcaatcgaggttcttcctgtggcataacctgtgttatgatgttatctttggtcttgagaactactgcgctagctggcttgtactttttatttattttcttttttgactgctgaatactaggttacatagtgaaccattctgctctagtttttggaaaaagttttgttgaacatttttttcaagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="130271" stop="129206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129971" g_stop="129957" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129849" g_stop="129513" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="348" r_length="333" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="360"/>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E587384" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E587384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129971" e_stop="129957"/>
          <exon e_start="129849" e_stop="129513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAG</genome_strand>
        <mrna_strand>GTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGCATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTATTCCTCCTCCTATGATAGCTGCTCCCGCAATCGAGGTTCTTCCTGTGGCAT---AACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCGCTAGCTGGCTTGTACTTTTTATTTATTTTCTTTTTTGACTGCTGAATACTAGGTTACATAGTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTT-GAACATTTTTTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595800" ref_strand="+" ref_description="SGN-E595800 [39080]">
      <seq>cttaggcagggtgtgctcggcatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttattcctcctcctatgatagctgctcccgcaatcgaggttcttcctgtggcataacctgtgttatgatgttatctttggtcttgagaactactgcgctagctggcttgtactttttatttattttcttttttgactgctgaatactaggttacatagtgaaccattctgctctagtttttggaaaaagttttgttgaacatttttttcaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="130151" stop="129206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129965" g_stop="129957" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129849" g_stop="129513" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="342" r_length="333" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="376"/>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E595800" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129965" e_stop="129957"/>
          <exon e_start="129849" e_stop="129513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAG</genome_strand>
        <mrna_strand>CTTAGGCAG...........................................................................................................GGTGTGCTCGGCATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTATTCCTCCTCCTATGATAGCTGCTCCCGCAATCGAGGTTCTTCCTGTGGCAT---AACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCGCTAGCTGGCTTGTACTTTTTATTTATTTTCTTTTTTGACTGCTGAATACTAGGTTACATAGTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTT-GAACATTTTTTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702132" ref_strand="+" ref_description="SGN-E702132 [FA17DE11]">
      <seq>catttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggagaatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaagtcaagatcatgcttgactgggatcctaaaggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgttatgatgttatctttggtcttgagaactactgcactagctggcttgnacttcctattttttttcttttttgactgctgaatactaaggtacatactgaaacattctgctctagtttttggaaaaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132429" g_stop="132344" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="234" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="406" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="461" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="593" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129534" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="909" r_length="316" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E702132" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132429" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTT</genome_strand>
        <mrna_strand>CATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGAATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGNACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAAGGTACATACTGAAACATTCTGCTCTAGTTTTTGGAAAAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726440" ref_strand="+" ref_description="SGN-E726440 [LA11DC06]">
      <seq>cttctctgcctcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgctatgatgttatcttcgttcttgagaactactgcactagctggcttgttatttattttccttttcactgccgaatactagattttacatagtgaaccgttttgctctagtttctgttatgtaagatactgactggcaagcatttttgttaatcttcatctcccctaatctggtgggactttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132442" g_stop="132344" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="247" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="419" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="474" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="606" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129544" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="907" r_length="301" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="975" polyA_stop="990"/>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E726440" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132442" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAG--GTTACATACTGAACCATTCTGCTCTAGTTTTTG</genome_strand>
        <mrna_strand>CTTCTCTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGCTATGATGTTATCTTCGTTCTTGAGAACTACTGCACTAGCTGGCTTG----T--TATTTATTTTC-CTTTTCACTGCCGAATACTAGATTTTACATAGTGAACCGTTTTGCTCTAGTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729677" ref_strand="+" ref_description="SGN-E729677 [LA21DB02]">
      <seq>ctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgctatgatgttatcttcgttcttgagaactactgcactagctggcttgttatttattttcctttttcactgccgaatactagattttacatagtgaaccgttttgctctaggttctgttatgtaagatactgactggcaagcnttttttgttaatcttcatctcccctactcggttgtgacttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132395" g_stop="132344" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="200" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="372" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="427" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="559" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129544" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="861" r_length="302" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="930" polyA_stop="946"/>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E729677" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132395" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAG--GTTACATACTGAACCATTCTGCTCTAGTTTTTG</genome_strand>
        <mrna_strand>CTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGCTATGATGTTATCTTCGTTCTTGAGAACTACTGCACTAGCTGGCTTG----T--TATTTATTTTCCTTTTTCACTGCCGAATACTAGATTTTACATAGTGAACCGTTTTGCTCTAGGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405595" ref_strand="+" ref_description="SGN-E405595 [PPI-1-E5]">
      <seq>gttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgcttggtatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaaggagagtttgttgttcctcctcctataatagctgctcccgcgattgaggttcttcctgtggcataaaaacctgtgttatgatgttatctttgttcttgagaactactgcactagctggcttgtgttttttatttattttcctttttcactgctgaatactagattttacatagtgaaccattttgctctaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131380" stop="129269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131081" g_stop="131055" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="82" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="214" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129546" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="520" r_length="306" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E405595" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131081" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAG--GTTACATACTGAACCATTCTGCTCTAGTTTT</genome_strand>
        <mrna_strand>GTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGGAGAGTTTGTTGTTCCTCCTCCTATAATAGCTGCTCCCGCGATTGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGTTCTTGAGAACTACTGCACTAGCTGGCTTGTGTTTTTTATTTATTTTCCTTTTTCACTGCTGAATACTAGATTTTACATAGTGAACCATTTTGCTCTAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746959" ref_strand="+" ref_description="SGN-E746959 [GI|47104323]">
      <seq>cctcgtgccgtccaactcttctctgcctcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgctatgatgttatcttcgttcttgagaactactgcactagctggcttgttatttattttcctttttcactgccgaatactagattttacatagtgaaccgttttgctctagtttctgttatgtaagatactgactggcaagcatttttgttaatcttcatctccccttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132460" g_stop="132344" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="264" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="436" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="491" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="623" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129547" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="922" r_length="299" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="977" polyA_stop="999"/>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E746959" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>927</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132460" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGTCCTAATCCAACTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAG--GTTACATACTGAACCATTCTGCTCTAGTTT</genome_strand>
        <mrna_strand>CCTCGTGC-CGTCCAACTCTTCTCTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGCTATGATGTTATCTTCGTTCTTGAGAACTACTGCACTAGCTGGCTTG----T--TATTTATTTTCCTTTTTCACTGCCGAATACTAGATTTTACATAGTGAACCGTTTTGCTCTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427094" ref_strand="-" ref_description="SGN-E427094 [STM-47-D14]">
      <seq>gtgagaaaggtaggaggatcagggagctgacgtcagttgttcagaagcgtttaaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaagatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaagaggaaggagagtttgttgttcctcctcctataatagctgctcccgcgattgaggttcttcccgtggcataaaaacctgtgttatgatgttatctttgttcttgagaactactgcactagctggcttgtgttttttatttattttcctttttcactgctgaatactagattttacatagtgaaccattttgctctagtttctgttatgtaagatactgactggtaagcatttttgttaatcttccatctccctaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131526" stop="129269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="227" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="359" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129551" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="660" r_length="301" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E427094" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427094" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAG--GTTACATACTGAACCATTCTGCTCTA</genome_strand>
        <mrna_strand>GTGAGAAAGGTAGGAGGATCAGGGAGCTGACGTCAGTTGTTCAGAAGCGTTTAAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAAGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAAGAGGAAGGAGAGTTTGTTGTTCCTCCTCCTATAATAGCTGCTCCCGCGATTGAGGTTCTTCCCGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGTTCTTGAGAACTACTGCACTAGCTGGCTTGTGTTTTTTATTTATTTTCCTTTTTCACTGCTGAATACTAGATTTTACATAGTGAACCATTTTGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414840" ref_strand="-" ref_description="SGN-E414840 [STM-20-C8]">
      <seq>agaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaattcaagggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgcttggtatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaaggagagtttgttgttcctcctcctataatagctgctcccgcgattgaggttcttcctgtggcataaaaacctgtgttatgatgttatctttgttcttgagaactactgcactagctggcttgtgttttttatttattttcctttttcactgctgaatactagattttacatagtgaaccattttgctctagtttctgtcatgtaagatactgagaggtaagcatttttgtaatcttctaaaaggattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131523" stop="129269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131223" g_stop="131055" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="224" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="356" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129551" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="657" r_length="301" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E414840" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414840" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131223" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAG--GTTACATACTGAACCATTCTGCTCTA</genome_strand>
        <mrna_strand>AGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTCAAGGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGGAGAGTTTGTTGTTCCTCCTCCTATAATAGCTGCTCCCGCGATTGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGTTCTTGAGAACTACTGCACTAGCTGGCTTGTGTTTTTTATTTATTTTCCTTTTTCACTGCTGAATACTAGATTTTACATAGTGAACCATTTTGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414885" ref_strand="-" ref_description="SGN-E414885 [STM-20-G12]">
      <seq>cagaagcgttttatttcaagggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgcttggtatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaaggagagtttgttgttcctcctcctataatagctgctcccgcgattgaggttcttcctgtggcataaaaacctgtgttatgatgttatctttgttcttgagaactactgcactagctggcttgtgttttttatttattttcctttttcactgctgaatactagattttacatagtgaaccattttgctctagtttctgtcatgtaagatactgacagagaaagcatttttgtaatcttctaaaaaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131485" stop="129269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131185" g_stop="131055" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="186" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="318" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129551" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="619" r_length="301" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E414885" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414885" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131185" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAG--GTTACATACTGAACCATTCTGCTCTA</genome_strand>
        <mrna_strand>CAGAAGCGTTTTATTTCAAGGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGGAGAGTTTGTTGTTCCTCCTCCTATAATAGCTGCTCCCGCGATTGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGTTCTTGAGAACTACTGCACTAGCTGGCTTGTGTTTTTTATTTATTTTCCTTTTTCACTGCTGAATACTAGATTTTACATAGTGAACCATTTTGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E602411" ref_strand="+" ref_description="SGN-E602411 [55473]">
      <seq>actgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgcttggtatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaaggagagtttgttgttcctcctcctataatagctgctcccgcgattgaggttcttcctgtggcataaaaacctgtgttatgatgttatctttgttcttgagaactactgcactagctggcttgtgttttttatttattttcctttttcactgctgaatactagattttacatagtgaaccattttgctctagtttctgtcatgtaagatactgactggtaagcatttttgttaatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131393" stop="129269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131093" g_stop="131055" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="94" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="226" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129551" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="527" r_length="301" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E602411" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131093" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAG--GTTACATACTGAACCATTCTGCTCTA</genome_strand>
        <mrna_strand>ACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGGAGAGTTTGTTGTTCCTCCTCCTATAATAGCTGCTCCCGCGATTGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGTTCTTGAGAACTACTGCACTAGCTGGCTTGTGTTTTTTATTTATTTTCCTTTTTCACTGCTGAATACTAGATTTTACATAGTGAACCATTTTGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586399" ref_strand="+" ref_description="SGN-E586399 [60454]">
      <seq>tgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaagaggaaggagagtttgttgttcctcctcctataatagctgctcctgcgattgaggttcttcccgtggcataaaaacctgtgttatgatgttatctttgttcttgagaactactgcactagctggcttgtgttttttatttattttcctttttcactgctgaatactagattttacatagtgaaccattttgctctagtttctgttatgtaagatactgactggtaagcattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="130345" stop="129269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130045" g_stop="129957" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129849" g_stop="129551" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="390" r_length="301" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E586399" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130045" e_stop="129957"/>
          <exon e_start="129849" e_stop="129551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAG--GTTACATACTGAACCATTCTGCTCTA</genome_strand>
        <mrna_strand>TGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAAGAGGAAGGAGAGTTTGTTGTTCCTCCTCCTATAATAGCTGCTCCTGCGATTGAGGTTCTTCCCGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGTTCTTGAGAACTACTGCACTAGCTGGCTTGTGTTTTTTATTTATTTTCCTTTTTCACTGCTGAATACTAGATTTTACATAGTGAACCATTTTGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288177" ref_strand="+" ref_description="SGN-E288177 [cLES-7-N15]">
      <seq>ttaatttcaatgaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaagtcaagatcatgcttgactgggatcctaaaggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgttatgatgttatctttggtcttgagaactactgcactagctggcttgtacttcctattttttttcttttttgactgctgaatactaggttacatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131475" stop="129265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131175" g_stop="131055" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="176" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="308" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129565" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="593" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E288177" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131175" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGA</genome_strand>
        <mrna_strand>TTAATTTCAATGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554518" ref_strand="+" ref_description="SGN-E554518 [cTSC-4-I7]">
      <seq>atggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgctatgatgttatcttcgttcttgagaactactgcactagctggcttgttatttattttccttttcactgccgaatactagattttacatagtgaaccgttttgctctagtttctggttatgtagatactgactgggcagcatttttgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132376" g_stop="132344" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="181" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="353" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="408" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="540" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129577" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="806" r_length="266" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="876" polyA_stop="886"/>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E554518" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132376" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAG</genome_strand>
        <mrna_strand>ATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGCTATGATGTTATCTTCGTTCTTGAGAACTACTGCACTAGCTGGCTTG----T--TATTTATTTTC-CTTTTCACTGCCGAATACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730790" ref_strand="+" ref_description="SGN-E730790 [LA25AH01]">
      <seq>cccttttctctgcctcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcatattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacatctgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccaccctaggaggaagaagagtttgttgttcctcctcctatgatagctgctctcgccatcgaagttcttcctgtggcatataaacctgtgctatgatgttatcttcgttcctgagaactactgcactagctggcttgttattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132446" g_stop="132344" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="251" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="423" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="478" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="611" r_length="133" r_score="0.924"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129618" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="843" r_length="232" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E730790" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132446" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACAT-TGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTT</genome_strand>
        <mrna_strand>CCCTTTTCTCTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCATATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATCTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCTAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCTCGCCATCGAAGTTCTTCCTGTGGCATATAAACCTGTGCTATGATGTTATCTTCGTTCCTGAGAACTACTGCACTAGCTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707265" ref_strand="+" ref_description="SGN-E707265 [FA32CA12]">
      <seq>ccctcttctctgcctcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgctatgatgttatcttcgttcttgagaactactgcactagctgggctgttatttattttcctttttcactgccgaatactagattttacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132446" g_stop="132344" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="251" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="423" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="478" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="610" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129618" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="842" r_length="232" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E707265" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132446" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTT</genome_strand>
        <mrna_strand>CCCTCTTCTCTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGCTATGATGTTATCTTCGTTCTTGAGAACTACTGCACTAGCTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714982" ref_strand="+" ref_description="SGN-E714982 [FB13AA05]">
      <seq>ctcttctctgcctcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgctatgatgttatcttcgttcttgagaactactgcactagctggcttggtatttattttcctttttcactgccgaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132444" g_stop="132344" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="249" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="421" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="476" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="608" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129618" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="840" r_length="232" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E714982" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132444" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTT</genome_strand>
        <mrna_strand>CTCTTCTCTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGCTATGATGTTATCTTCGTTCTTGAGAACTACTGCACTAGCTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729603" ref_strand="+" ref_description="SGN-E729603 [LA21CC01]">
      <seq>cttctctgcatcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgctatgatgttatcttcgttcttgagaactactgcactagctggcttgttatttattttcctttttcactgccgaatactagattttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132442" g_stop="132344" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="247" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="419" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="474" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="606" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129618" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="838" r_length="232" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E729603" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132442" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTT</genome_strand>
        <mrna_strand>CTTCTCTGCATCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGCTATGATGTTATCTTCGTTCTTGAGAACTACTGCACTAGCTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573930" ref_strand="+" ref_description="SGN-E573930 [33318]">
      <seq>cggcggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaagaggaaggagagttgttgttcctcctcctataatagctgtcctgcgattgaaggttcttcccgtggcataaaaacctgtgttatgatgttatcctttgtcttgagactactgcactacttggttgtgttttattatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132416" g_stop="132344" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="221" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="393" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="448" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="580" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129618" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="809" r_length="229" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E573930" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132416" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCG-AGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTT</genome_strand>
        <mrna_strand>CGGCGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAAGAGGAAGGAGAG-TTGTTGTTCCTCCTCCTATAATAGCTG-TCCTGCGATTGAAGGTTCTTCCCGTGGCATAAAAACCTGTGTTATGATGTTATCCTTTGTCTTGAG-ACTACTGCACTA-CTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724474" ref_strand="+" ref_description="SGN-E724474 [FC24AH05]">
      <seq>aatcggccgaattgatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgctatgatgttatcttcgttcttgagaactactgcactagctggcttgttatttattttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132416" g_stop="132344" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="216" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="388" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="443" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="575" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129618" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="807" r_length="232" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E724474" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132416" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTT</genome_strand>
        <mrna_strand>AATCGGCCGAATTG-ATC--T--CAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGCTATGATGTTATCTTCGTTCTTGAGAACTACTGCACTAGCTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733342" ref_strand="+" ref_description="SGN-E733342 [LB04CE02]">
      <seq>cgcttacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgctatgatgttatcttcgttcttgagaactactgcactagctggcttgttatttattttcctttttcactgccgaatactagattttacatagtgaaccgttttgctctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132384" g_stop="132344" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="188" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="360" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="415" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="547" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129618" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="779" r_length="232" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E733342" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132384" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTT</genome_strand>
        <mrna_strand>CGCTTA-CATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGCTATGATGTTATCTTCGTTCTTGAGAACTACTGCACTAGCTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704749" ref_strand="+" ref_description="SGN-E704749 [FA25AF05]">
      <seq>tggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgctatgatgttatcttcgttcttgagaactactgcactcgctggcttgttatttattttccttttttcctgccgaatactagatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132375" g_stop="132344" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="180" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="352" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="407" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="539" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129618" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="771" r_length="232" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E704749" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132375" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTT</genome_strand>
        <mrna_strand>TGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGCTATGATGTTATCTTCGTTCTTGAGAACTACTGCACTCGCTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353700" ref_strand="+" ref_description="SGN-E353700 [cTOS-10-A3]">
      <seq>agggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggntcttcctgtggcataaaaacctgtgctatgatgttatcttcgttcttgagaactactgcactagctggcttggtatttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132471" stop="129312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132171" g_stop="132111" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="233" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="288" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="420" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129849" g_stop="129618" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="652" r_length="232" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E353700" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132171" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTT</genome_strand>
        <mrna_strand>AGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGNTCTTCCTGTGGCATAAAAACCTGTGCTATGATGTTATCTTCGTTCTTGAGAACTACTGCACTAGCTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561351" ref_strand="+" ref_description="SGN-E561351 [17330]">
      <seq>ccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaagaggaaggagagtttgttgttcctcctcctataatagctgctcctgcgattgaggttcttcccgtgggataaaaacctgtgttatgatgttatctttgttcttgagaactactgcactagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131412" stop="129321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131112" g_stop="131055" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="113" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="245" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129621" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="474" r_length="229" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E561351" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131112" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGG</genome_strand>
        <mrna_strand>CCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAAGAGGAAGGAGAGTTTGTTGTTCCTCCTCCTATAATAGCTGCTCCTGCGATTGAGGTTCTTCCCGTGGGATAAAAACCTGTGTTATGATGTTATCTTTGTTCTTGAGAACTACTGCACTAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738860" ref_strand="+" ref_description="SGN-E738860 [LC15AH08]">
      <seq>ctcttttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggagaatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaagtcaagatcatgcttgactgggatcctaaaggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgttatgatgttatctttggtcttgagaactactgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132431" g_stop="132344" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="236" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="408" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="463" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="595" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129627" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="818" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E738860" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132431" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACT</genome_strand>
        <mrna_strand>CTCTTTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGAATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700094" ref_strand="+" ref_description="SGN-E700094 [FA12AD12]">
      <seq>gtcaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcattccacccaaggaggaagaagagtttgttgttccctcctcctatgatagctgctccccgccatcgaggttccttcctggtggcataaaaacctgggctatgatgttatcttcgttcttgagaactactgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132405" g_stop="132344" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="210" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="382" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="437" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="569" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129627" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="797" r_length="228" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E700094" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132405" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCA-TCCACCCAAGGAGGAAGAAGAGTTTGTTGTT-CCTCCTCCTATGATAGCTGCT-CCCGCCATCGAGGTT-CTTCCT-GTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACT</genome_strand>
        <mrna_strand>GTCAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATTCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCCTCCTCCTATGATAGCTGCTCCCCGCCATCGAGGTTCCTTCCTGGTGGCATAAAAACCTGGGCTATGATGTTATCTTCGTTCTTGAGAACTACTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286313" ref_strand="-" ref_description="SGN-E286313 [cLES-11-E13]">
      <seq>aagaatacattgatgctgctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaagtcaagatcatgcttgactgggatcctaaaggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgttatgatgttatctttggtcttgagaactactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="130300" stop="129330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130000" g_stop="129957" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129849" g_stop="129630" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="264" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E286313" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286313" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="130000" e_stop="129957"/>
          <exon e_start="129849" e_stop="129630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGC</genome_strand>
        <mrna_strand>AAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709580" ref_strand="+" ref_description="SGN-E709580 [FA52CA01]">
      <seq>cgcttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagaagttgttgttcctccctctatgatagctgctcccgccatcgagggtcttcctgtggcataaaaccctgtgctatgatgttatcttcgttcctgagaactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132429" g_stop="132344" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="234" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="406" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="461" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="593" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129632" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="811" r_length="218" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E709580" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132429" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACT</genome_strand>
        <mrna_strand>CGCTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAAGTTGTTGTTCCTCCCTCTATGATAGCTGCTCCCGCCATCGAGGGTCTTCCTGTGGCATAAAACCCTGTGCTATGATGTTATCTTCGTTCCTGAGAACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243246" ref_strand="+" ref_description="SGN-E243246 [cLEE-2-D10]">
      <seq>tgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagagtgtgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgctatgatgttatcttcgttcttgagaactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131489" stop="129332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131189" g_stop="131055" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="190" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="322" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129632" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="540" r_length="218" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E243246" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131189" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACT</genome_strand>
        <mrna_strand>TGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTGTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGCTATGATGTTATCTTCGTTCTTGAGAACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228406" ref_strand="+" ref_description="SGN-E228406 [cLED-3-J24]">
      <seq>tcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgctatgatgttatcttcgttcttgagaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131494" stop="129333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131194" g_stop="131055" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="195" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="327" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129633" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="544" r_length="217" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E228406" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131194" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTAC</genome_strand>
        <mrna_strand>TCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGCTATGATGTTATCTTCGTTCTTGAGAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710119" ref_strand="+" ref_description="SGN-E710119 [FA54BB09]">
      <seq>ccctttaaggccgcctcttacttgnatctgctagcggcggcagtttttctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccatcgaggttcttcctgtggcataaaaacctgtgctatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132436" g_stop="132344" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="104" r_length="93" r_score="0.849"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="252" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="424" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="479" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="611" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129656" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="805" r_length="194" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E710119" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132436" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATG</genome_strand>
        <mrna_strand>CGCCTCTTACTTGNATCTGCTAGCGGCGGCAGTTTTTCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGCTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344495" ref_strand="+" ref_description="SGN-E344495 [cTOF-14-J21]">
      <seq>tcttctctgcctcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaagaggaagaagagtttgttgttcctcctcctatgatagctgctcccgccattcgagttcttcctgtggcataaaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132443" g_stop="132344" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="248" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="420" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="475" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="607" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129667" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="790" r_length="183" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E344495" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132443" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCT</genome_strand>
        <mrna_strand>TCTTCTCTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAAGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATTCGAGTTCTTCCTGTGGCATAAAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E588512" ref_strand="+" ref_description="SGN-E588512 [42066]">
      <seq>cttgtatctgctagcggcggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagactttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaaacaagggcctatgactccattgccagatttggtgactattcatccagccaaagaggaaggagagtttgttgttccctcctcctaataatagctgctcctgcgattgaggttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132413" g_stop="132344" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="87" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="235" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="407" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="463" r_length="56" r_score="0.927"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="595" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129685" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="763" r_length="168" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E588512" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132413" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGA-TTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGT-AAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTT-CCTCCTCCT-ATGATAGCTGCTCCCGCCATCGAGGTTCTT</genome_strand>
        <mrna_strand>CGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGACTTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCAGCCAAAGAGGAAGGAGAGTTTGTTGTTCCCTCCTCCTAATAATAGCTGCTCCTGCGATTGAGGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427095" ref_strand="+" ref_description="SGN-E427095 [STM-47-D14]">
      <seq>aatcaatgaacgaagtgctgacaagagagtccgcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgatatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacgtcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaagatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaagaggaaggagagtttgttgttcctcctcctataatagctgctcccgcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132527" stop="129395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132233" g_stop="132111" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="295" r_length="172" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="350" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="482" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129849" g_stop="129695" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="637" r_length="155" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E427095" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132233" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCAT</genome_strand>
        <mrna_strand>AATCAATGAACGAAGTGCTGACAAGAGAGTCCGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGATATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACGTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAAGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAAGAGGAAGGAGAGTTTGTTGTTCCTCCTCCTATAATAGCTGCTCCCGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481892" ref_strand="+" ref_description="SGN-E481892 [cSTD-20-A19]">
      <seq>ctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgttacttaggcagggtgtgctcggtatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaaagagttgttgttcctcctnctatgatagctgctcccgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132382" g_stop="132344" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="187" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="359" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="414" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="546" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129697" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="699" r_length="153" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E481892" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132382" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCC</genome_strand>
        <mrna_strand>CTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGTTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAAGAGTTGTTGTTCCTCCTNCTATGATAGCTGCTCCCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407400" ref_strand="+" ref_description="SGN-E407400 [PPI-6-P14]">
      <seq>aacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagcttcgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgctcggcatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttattcctcctcctatgatagctgctcccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132379" g_stop="132344" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="184" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="356" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="411" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="543" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129698" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="695" r_length="152" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E407400" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132379" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGC</genome_strand>
        <mrna_strand>AACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTTCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGCATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTATTCCTCCTCCTATGATAGCTGCTCCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485784" ref_strand="+" ref_description="SGN-E485784 [cSTE-19-D23]">
      <seq>cggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagcttcgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgctcggcatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccagggaggaaagaagagttgttattcctccctctatgatagctgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132413" g_stop="132344" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="218" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="390" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="445" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="577" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129701" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="726" r_length="149" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E485784" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132413" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGG-AAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCC</genome_strand>
        <mrna_strand>CGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTTCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGCATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAGGGAGGAAAGAAGAG-TTGTTATTCCTCCCTCTATGATAGCTGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345855" ref_strand="+" ref_description="SGN-E345855 [cTOF-24-I15]">
      <seq>taatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggagaagaagagtttgttgttcctcctcctatgatagctgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132386" g_stop="132344" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="191" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="363" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="418" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="550" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129701" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="698" r_length="148" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E345855" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132386" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCC</genome_strand>
        <mrna_strand>TAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGA-GAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697886" ref_strand="+" ref_description="SGN-E697886 [FA04CD06]">
      <seq>cctttaactgcctcttacttgtatctgctagcggcggcagtgcctctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccacccaaggaggaagaagagtttgttgctcctcctcctatgatagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132444" g_stop="132344" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.861"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="249" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="421" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="476" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="608" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129703" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="755" r_length="147" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E697886" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132444" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCT</genome_strand>
        <mrna_strand>CCTTTAACTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGCCTCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGCTCCTCCTCCTATGATAGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320507" ref_strand="+" ref_description="SGN-E320507 [cTOB-22-G7]">
      <seq>aaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccaccccaagaagaagaagagtttgttgttcctcctcctatgatagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132354" g_stop="132344" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="159" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="331" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="386" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="518" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129705" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="663" r_length="145" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E320507" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132354" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTG</genome_strand>
        <mrna_strand>AAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCCAAGAAGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590062" ref_strand="+" ref_description="SGN-E590062 [43650]">
      <seq>ttgcctcttacttgtatctgctagcggcggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccaatttggtgacttttcatccacccaaaaggaaggaatttgttgtttcctcctccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132437" g_stop="132344" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="245" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="417" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="472" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="604" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129714" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="737" r_length="133" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E590062" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132437" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCTCTCATTTGTATCTTCCATCGGC--CG-CAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTG-TTCCTCCTCCTA</genome_strand>
        <mrna_strand>TTGCCTCTTACTTGTATCTGCTAGCGGCGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCA-ATTTGGTGACTTTTCATCCACCCAA-AAGGAAG--GAATTTGTTGTTTCCTCCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297142" ref_strand="+" ref_description="SGN-E297142 [cLET-29-I3]">
      <seq>tcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaagtcaagatcatgcttgactgggatcctaaaggtaaacaagggcctatgaccccattgccagatttggtgactattcatccacccaaggaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131486" stop="129438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131186" g_stop="131055" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="187" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="319" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129849" g_stop="129738" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="431" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E297142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131186" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAG</genome_strand>
        <mrna_strand>TCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721724" ref_strand="+" ref_description="SGN-E721724 [FC15AB10]">
      <seq>aatcggccgaattgaagcaggctgaattaataagaaaagagagcccaactagtaacctgccttaaatctttgacaaaccctttctcccttgtcctaatccaactcttcactgcctctcatttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaaaagagttggcggaaaatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcaaaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcaaaagcgttttaatttcaaggaaaacactgttgagctctatgcaaagaaagtcaacaataggggtctctgtgccattgctcaggcaaagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaaaaatacattgatgctgctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaaagtcaagatcatgcttgactgggatcctaaaggtaaacaagggcctatgaccccattgccagatttggtgactattcatccaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132542" g_stop="132344" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="203" r_length="199" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="351" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="523" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="578" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="710" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129747" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="814" r_length="104" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E721724" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132542" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTTAGAAGCAGGCTGAATTAATAAGAAAAGAGAGCCCAACTAGTAACCTGCCTTAAATCTTTGACAAACCCTTTCTCCCTTGTCCTAATCCAACTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATC-AAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCA</genome_strand>
        <mrna_strand>GGCCGAATTGAAGCAGGCTGAATTAATAAGAAAAGAGAGCCCAACTAGTAACCTGCCTTAAATCTTTGACAAACCCTTTCTCCCTTGTCCTAATCCAACTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAAAGAGTTGGCGGAAAATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAAAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAAAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAAAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAAAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347901" ref_strand="+" ref_description="SGN-E347901 [cTOF-31-G24]">
      <seq>ctcttcactgcctctcatttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagaagaagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctacttangcagggtgtgctcggtatcaaagtcaagatcatgcttngactgggatcctaaaggtaaacaagggcctatgaccccattgccagatttggtgactattcatccaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132444" g_stop="132344" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="251" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="423" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="478" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="610" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129747" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="714" r_length="104" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E347901" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132444" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAG-AG-AGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTT-GACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCA</genome_strand>
        <mrna_strand>CTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAAGAAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTANGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTNGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456022" ref_strand="+" ref_description="SGN-E456022 [cSTS-28-E14]">
      <seq>gcctcttacttgtatctgctagcggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttangcagggtgtgcttggtatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132435" g_stop="132344" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="240" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="412" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="467" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="599" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129747" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="702" r_length="103" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E456022" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132435" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCA</genome_strand>
        <mrna_strand>GCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTANGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345983" ref_strand="+" ref_description="SGN-E345983 [cTOF-24-E23]">
      <seq>agtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttacctcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttngctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgcccagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgctttgggatcttaagggtaaacaagggcctatgactccattgccagatttggtgactattcatccaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132260" g_stop="132111" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="323" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="379" r_length="56" r_score="0.927"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="511" r_length="132" r_score="0.932"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129849" g_stop="129747" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="615" r_length="104" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E345983" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132260" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTA-CTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTT-GCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTG-ACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCA</genome_strand>
        <mrna_strand>AGTTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACCTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTNGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCCCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGCTTTGGGATCTTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATCCACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418278" ref_strand="+" ref_description="SGN-E418278 [STM-27-O1]">
      <seq>ctcatttgtatctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaagcagagtcactgcgatacaagttacttggaagacttgctggccgaaaggcttggtatgggggtctgcgatttgtaatggaaaatggaacccaaggatgccaagggattggtagtggaaagcttcctgcttaacgtgccaagtccatgaaggttaaaggtgggtacctgaattcttctggcccacctggtaaagaataccttggtgccactggtaagcctgtgcttcttaaggaaggtgggcctcggtatcaaagtaagatcatgcttgactgggatcctaagggtaaacaagggcctatgaccccattgccagatttggtgactattcatccaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132431" g_stop="132344" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="236" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="408" r_length="172" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="463" r_length="55" r_score="0.800"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.78"/>
            <acceptor a_prob="1.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="595" r_length="132" r_score="0.795"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.76"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129748" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="697" r_length="102" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E418278" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132431" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTG-CTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCC</genome_strand>
        <mrna_strand>CTCATTTGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAAGCAGAGTCACTGCGATACAAGTTACTTGGAAGACTTGCTGGCCGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGGTATGGGGGTCTGCGATTTGTAATGGAAAATGGAACCCAAGGATGCCAA.......................................................................................GGGATTGGTAGTGGAAAGCTTCCTGCTTAACGTGCCAAGTCCATGAAGGTTAAAGGTGGGTACCTGAATTCTTCTGGCCCACCTGGTAAAGAATACCTTGGTGCCACTGGTAAGCCTGTGCTTCTTAAGGAA...........................................................................................................GGTGGGCCTCGGTATCAAAGT-AAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727991" ref_strand="+" ref_description="SGN-E727991 [LA16BE03]">
      <seq>ctcctttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggagaatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaagtcaagatcatgcttgactgggatcctaaaggtaaacaagggcctatgaccccattgccagatttggtgactattcatccaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132431" g_stop="132344" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="236" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="408" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="463" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="595" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129748" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="697" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E727991" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132431" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCC</genome_strand>
        <mrna_strand>CTCCTTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGAATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568209" ref_strand="+" ref_description="SGN-E568209 [12457]">
      <seq>tatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagcttcgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgctcggcatcaaagtaaagatcatgcttgactggggatcctaagggtacacaagcgctatgaacccattgcagatttggtgacctattcatccaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132396" g_stop="132344" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="201" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="373" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="428" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="560" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129748" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="662" r_length="102" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E568209" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132396" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACT-GGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGA-CTATTCATCCACCC</genome_strand>
        <mrna_strand>TATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTTCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGCATCAAAGTAAAGATCATGCTTGACTGGGGATCCTAAGGGTACACAAGCG-CTATGAACCCATTG-CAGATTTGGTGACCTATTCATCCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343530" ref_strand="+" ref_description="SGN-E343530 [cTOF-19-M12]">
      <seq>ctctcatttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgcctacttagcagggtgtgctcggtatcaaagtcaagatcatgcttgacctgggatcctaaaggtaaacaagggcctatgaccccattgccagatttggtgactattcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132433" g_stop="132344" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="238" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="410" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="465" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="597" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129753" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="695" r_length="98" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E343530" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132433" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTG-CTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGA-CTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATC</genome_strand>
        <mrna_strand>CTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCCTACTTA-GCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACCTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450573" ref_strand="+" ref_description="SGN-E450573 [cSTS-9-B14]">
      <seq>ctcatttgtatctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagtttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgttacttatgcagggtgtgctcggtatcaaagtaaagatcatgcttgactgggatcctaanggtaaacaagggcctatgaccccattgccagatttggtgactattcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132431" g_stop="132344" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="235" r_length="147" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="407" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="462" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="594" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129753" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="691" r_length="97" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E450573" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132431" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATC</genome_strand>
        <mrna_strand>CTCATTTGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAG-TTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGTTACTTATGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAANGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461238" ref_strand="+" ref_description="SGN-E461238 [cPRO-7-B24]">
      <seq>ctcatttgtatctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagcttcgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgctacttangcagggtgtgctcggcatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgaccccattgccagatttggtgactattcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132431" g_stop="132344" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="236" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="408" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="463" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="595" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129753" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="692" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E461238" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132431" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATC</genome_strand>
        <mrna_strand>CTCATTTGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTTCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTANGCAG...........................................................................................................GGTGTGCTCGGCATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345597" ref_strand="+" ref_description="SGN-E345597 [cTOF-18-I13]">
      <seq>tatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactattcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132398" g_stop="132344" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="203" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="375" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="430" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="562" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129753" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="659" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E345597" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132398" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATC</genome_strand>
        <mrna_strand>TATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451234" ref_strand="+" ref_description="SGN-E451234 [cSTS-12-K13]">
      <seq>tacttgtatctgctagcggcggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttangcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaanggtaaacaagggcctatgactccattgccagatttggtgactattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132413" g_stop="132344" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="89" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="237" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="409" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="464" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="596" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129754" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="692" r_length="96" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E451234" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132413" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCAT</genome_strand>
        <mrna_strand>CGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTANGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAANGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567530" ref_strand="+" ref_description="SGN-E567530 [11669]">
      <seq>atctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttattctgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgtggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattacggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttggctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaacggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgttacttaggcagggtgtgctcggtatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggctatgancccattgccagatttgggtgactattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132384" g_stop="132344" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="191" r_length="150" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="364" r_length="173" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="419" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="551" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129754" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="647" r_length="96" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E567530" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132384" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTT-TTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCG-GGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTT-GCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTT-GGTGACTATTCAT</genome_strand>
        <mrna_strand>ATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTATTCTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGTGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTACGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAACGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGTTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGG-CTATGANCCCATTGCCAGATTTGGGTGACTATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457003" ref_strand="+" ref_description="SGN-E457003 [cPRO-2-G13]">
      <seq>cttcactgcctctcatttgtatctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagcttcgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgctacttangcagggtgtgctcggcatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgaccccattgccagatttggtgactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132442" g_stop="132344" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="247" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="419" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="474" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="606" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129757" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="699" r_length="93" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E457003" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132442" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATT</genome_strand>
        <mrna_strand>CTTCACTGCCTCTCATTTGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTTCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTANGCAG...........................................................................................................GGTGTGCTCGGCATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290520" ref_strand="+" ref_description="SGN-E290520 [cLES-20-A14]">
      <seq>caagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaagcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="130353" stop="129458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130053" g_stop="129957" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129849" g_stop="129758" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="189" r_length="92" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E290520" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130053" e_stop="129957"/>
          <exon e_start="129849" e_stop="129758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTAT</genome_strand>
        <mrna_strand>CAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAAGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E582343" ref_strand="+" ref_description="SGN-E582343 [7976]">
      <seq>tggcttacttggtatctagctagcggcggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcaggattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattatgagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggcaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttacagaatacattgatgcagctgttaggcatgtgctacttaggcaggatgtgcttggtatcacacagtcaagatccatgcttgactgggatcctaaggggtaaacaaggggctatgactccattgcagcatgtggtgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132413" g_stop="132344" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="97" r_length="71" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="246" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="418" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="473" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="606" r_length="133" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129759" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="701" r_length="95" r_score="0.813"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E582343" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132413" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCA-GATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTA-GGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGG-AAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCA-A-AGTCAAGAT-CATGCTTGACTGGGATCCTAA-AGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTA</genome_strand>
        <mrna_strand>CGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTATGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGCAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTACAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GATGTGCTTGGTATCACACAGTCAAGATCCATGCTTGACTGGGATCCTAAGGGGTAAACAAGGGGCTATGACTCCATTGCAGCATGTGGTGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249691" ref_strand="+" ref_description="SGN-E249691 [cLEF-56-B10]">
      <seq>gacgcctcatattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaagcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctacttaagcagggtgtgctcggtatcaaagtcaagatcatgcttgactgggatcctaaaggtaaacaagggcctatgaccccattgccagatttggtgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132371" g_stop="132344" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="176" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="348" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="403" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="535" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129759" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="626" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E249691" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132371" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTA</genome_strand>
        <mrna_strand>GACGCCTCATATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAAGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAAGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414839" ref_strand="+" ref_description="SGN-E414839 [STM-20-C8]">
      <seq>cttacttgtattctgctagcggcggcagtgaatcaatatcaaaccctaatctcaacattggcaacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttangcagggtgtgcttggtatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattgccagatttggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132431" g_stop="132344" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="238" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="410" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="465" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="597" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129761" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="686" r_length="89" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E414839" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132431" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTGTA-TCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACA-TGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGAC</genome_strand>
        <mrna_strand>CTTACTTGTATTCTGCTAGCGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATTGGCAACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTANGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTGCCAGATTTGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437546" ref_strand="+" ref_description="SGN-E437546 [cSTA-4-K7]">
      <seq>ctttnctcgcccggagtgaatcatttcaaaccctaactcaactggcgacgcctcagattagtcaaaagcgaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatgacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttcaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaagtaaagatcatgcttgactgggatcctaacggtaaacaagggcctatgaccccattgccagatttggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132420" g_stop="132344" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="221" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="394" r_length="173" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="449" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="581" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129761" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="670" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E437546" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132420" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGAT-ACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGAC</genome_strand>
        <mrna_strand>CTTTNCTCGCCCGGAGTGAATC-ATTTCAAACCCTAA-CTCAAC-TGGCGACGCCTCAGATTAGTCAAAAGCG-AAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATGACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTCAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAACGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720240" ref_strand="+" ref_description="SGN-E720240 [FC10AH08]">
      <seq>tcggccgaattggtcctaatccaactctcccctgtaactcatttgtatcttccatcggccgcagtgaatcactatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggagaatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcaaaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaagtcaagatcatgcttgactgggatcctaaaggtaaacaagggcctatgaccccattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132456" g_stop="132344" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="125" r_length="113" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="273" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="445" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="500" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="632" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129774" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="708" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E720240" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132456" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTAATCCAACTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGC</genome_strand>
        <mrna_strand>GTCCTAATCCAACTCTCCCCTGTAACTCATTTGTATCTTCCATCGGCCGCAGTGAATCACTATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGAATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAAAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437528" ref_strand="+" ref_description="SGN-E437528 [cSTA-4-G7]">
      <seq>ctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgaccccattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132420" g_stop="132344" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="225" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="397" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="452" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="584" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129774" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="660" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E437528" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132420" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGC</genome_strand>
        <mrna_strand>CTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACCCCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445563" ref_strand="+" ref_description="SGN-E445563 [cSTA-1-G7]">
      <seq>ctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgctcggtatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgaccccattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132420" g_stop="132344" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="225" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="397" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="452" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="584" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129774" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="660" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E445563" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132420" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGC</genome_strand>
        <mrna_strand>CTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACCCCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339085" ref_strand="+" ref_description="SGN-E339085 [cTOF-6-I7]">
      <seq>tgcctctcatttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgcctacttagcaggggtgtgctcggtatcaaagtcaagatcatgcttgcttgggatcctaaaagtaaacaaaggcctatgaccccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132436" g_stop="132344" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="241" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="413" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="467" r_length="54" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="600" r_length="133" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129775" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="675" r_length="75" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E339085" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132436" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTG-CTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTG</genome_strand>
        <mrna_strand>TGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCC-AGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCCTACTTAGCAGG...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGCTTGGGATCCTAAAAGTAAACAAAGGCCTATGACCCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344038" ref_strand="+" ref_description="SGN-E344038 [cTOF-12-J1]">
      <seq>tcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132432" g_stop="132344" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="237" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="409" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="464" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="596" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129775" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="671" r_length="75" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E344038" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132432" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTG</genome_strand>
        <mrna_strand>TCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340796" ref_strand="+" ref_description="SGN-E340796 [cTOF-5-M2]">
      <seq>ttcactgcctctcatttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctacttangcaaggtgtgctcggtatcaaagtcaagatcatgcttgactggggatcctaaaggtaaacaagggcctatgaccccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132441" g_stop="132344" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="246" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="418" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="473" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="605" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129776" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="680" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E340796" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132441" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACT-GGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATT</genome_strand>
        <mrna_strand>TTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTANGCAA...........................................................................................................GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454858" ref_strand="+" ref_description="SGN-E454858 [cSTS-24-H21]">
      <seq>cagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttangcagggtgtgcttggtatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132407" g_stop="132344" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="212" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="384" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="439" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="571" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129776" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="645" r_length="74" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E454858" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132407" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATT</genome_strand>
        <mrna_strand>CAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTANGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456508" ref_strand="+" ref_description="SGN-E456508 [cSTS-29-B8]">
      <seq>accctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttangcagggtgtgcttgggatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132390" g_stop="132344" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="195" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="367" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="422" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="554" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129776" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="628" r_length="74" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E456508" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132390" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATT</genome_strand>
        <mrna_strand>ACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTANGCAG...........................................................................................................GGTGTGCTTGGGATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340012" ref_strand="+" ref_description="SGN-E340012 [cTOF-3-E4]">
      <seq>tcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcctaagggtaaacaagggcctatgactcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132381" g_stop="132344" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="186" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="358" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="413" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="545" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129778" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="617" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E340012" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132381" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCA</genome_strand>
        <mrna_strand>TCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGACTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454525" ref_strand="+" ref_description="SGN-E454525 [cSTS-23-J3]">
      <seq>atcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgcttggtatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaagggcctatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132395" g_stop="132344" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="200" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="372" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="427" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="559" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129782" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="627" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E454525" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132395" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGAC</genome_strand>
        <mrna_strand>ATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAGGGCCTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571973" ref_strand="+" ref_description="SGN-E571973 [31053]">
      <seq>cggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcaggggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgcttggtatcaaagtaaagatcatgcttgactgggatcctaagggtaaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132413" g_stop="132344" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="218" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="391" r_length="173" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="446" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="578" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129792" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="636" r_length="58" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E571973" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132413" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTA-GGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAG</genome_strand>
        <mrna_strand>CGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTAAAGATCATGCTTGACTGGGATCCTAAGGGTAAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560839" ref_strand="+" ref_description="SGN-E560839 [20556]">
      <seq>gtatctgctagcggcggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgattttcttcttggccaaccgggttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgcttggttatcacaagtcacgatcatgctttgactgggatcctaagggtaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132428" g_stop="132344" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="232" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="404" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="459" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="594" r_length="135" r_score="0.924"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129795" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="652" r_length="58" r_score="0.836"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E560839" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132428" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGA-TTTCTTC-TGGACAACC-TGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGG-TATCA-AAGTCAAGATCATGC-TTGACTGGGATCCTAAAGGTAAAC</genome_strand>
        <mrna_strand>GTATCT-GCTAGCGGCGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTTCTTCTTGGCCAACCGGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTTATCACAAGTCACGATCATGCTTTGACTGGGATCCTAAGGGTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419181" ref_strand="+" ref_description="SGN-E419181 [STM-29-K1]">
      <seq>tttgtatctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagcttcgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgctcggcatcaaagtaaagatcatgcttgactgggatccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132427" g_stop="132344" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="232" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="404" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="459" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="591" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129804" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="637" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E419181" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132427" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTA</genome_strand>
        <mrna_strand>TTTGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTTCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGCATCAAAGTAAAGATCATGCTTGACTGGGATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446659" ref_strand="+" ref_description="SGN-E446659 [cSTA-22-B7]">
      <seq>tttgtatctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagcttcgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgctcggcatcaaagtaaagatcatgcttgactgggatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132427" g_stop="132344" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="232" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="404" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="459" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="591" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129805" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="636" r_length="45" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E446659" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132427" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCT</genome_strand>
        <mrna_strand>TTTGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTTCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTCGGCATCAAAGTAAAGATCATGCTTGACTGGGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474414" ref_strand="+" ref_description="SGN-E474414 [cSTB-36-M24]">
      <seq>ctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagcttcgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgctacttangcagggtgtgctcggcatcaaagtaaagatcatgcttgactgggatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132382" g_stop="132344" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="187" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="359" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="414" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="546" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129805" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="591" r_length="45" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E474414" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132382" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCT</genome_strand>
        <mrna_strand>CTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTTCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTANGCAG...........................................................................................................GGTGTGCTCGGCATCAAAGTAAAGATCATGCTTGACTGGGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443139" ref_strand="+" ref_description="SGN-E443139 [cSTA-36-M6]">
      <seq>tgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaagcatgtgctacttaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132515" stop="129505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132215" g_stop="132111" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="277" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="332" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="464" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129849" g_stop="129805" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="509" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E443139" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132215" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCT</genome_strand>
        <mrna_strand>TGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAAGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462480" ref_strand="+" ref_description="SGN-E462480 [cPRO-11-F16]">
      <seq>cttcactgcctctcatttgtatctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagcttcgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgctacttangcagggtgtgctcggcatcaaagtaaagatcatgcttgactgggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132442" g_stop="132344" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="247" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="419" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="474" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="606" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129806" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="650" r_length="44" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E462480" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132442" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCC</genome_strand>
        <mrna_strand>CTTCACTGCCTCTCATTTGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTTCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTANGCAG...........................................................................................................GGTGTGCTCGGCATCAAAGTAAAGATCATGCTTGACTGGGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457539" ref_strand="+" ref_description="SGN-E457539 [cPRO-3-A23]">
      <seq>cttgtatctgctagcggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttangcagggtgtgcttggtatcaaagtaaagatcatgcttgactgggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132427" g_stop="132344" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="232" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="404" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="459" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="591" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129806" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="635" r_length="44" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E457539" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132427" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCC</genome_strand>
        <mrna_strand>CTTGTATCTGCTAGCGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTANGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTAAAGATCATGCTTGACTGGGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301915" ref_strand="+" ref_description="SGN-E301915 [cLEW-25-J6]">
      <seq>tttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttaatggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccgaccggttaaagaatacattgatgcaactgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="320" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="375" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="507" r_length="132" r_score="0.917"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129849" g_stop="129807" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="550" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E301915" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATC</genome_strand>
        <mrna_strand>TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAATGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCGACCGGTTAAAGAATACATTGATGCAACTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456760" ref_strand="+" ref_description="SGN-E456760 [cSTS-30-O18]">
      <seq>cttgtatctgctagcggcggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttangcagggtgtgcttggtatcaaagtcaagatcatgcttgactgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132413" g_stop="132344" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="87" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="235" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="407" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="462" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="594" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129808" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="636" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E456760" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132413" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGAT</genome_strand>
        <mrna_strand>CGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTANGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414884" ref_strand="+" ref_description="SGN-E414884 [STM-20-G12]">
      <seq>cttacttgtatctgctagcggcggcagtgaatcaatatcaaaccctaatctcaacatggcaacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttangcanggtgtgcttggtatcaaagtaaagatcatgcttgactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132431" g_stop="132344" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="236" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="408" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="463" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="595" r_length="132" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129810" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="635" r_length="40" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E414884" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132431" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGG</genome_strand>
        <mrna_strand>CTTACTTGTATCTGCTAGCGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCAACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTANGCAN...........................................................................................................GGTGTGCTTGGTATCAAAGTAAAGATCATGCTTGACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320380" ref_strand="+" ref_description="SGN-E320380 [cTOB-22-E22]">
      <seq>tagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccnaccggttaaagatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132416" g_stop="132344" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="221" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="393" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="448" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="579" r_length="131" r_score="0.924"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129811" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="618" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E320380" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132416" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGG</genome_strand>
        <mrna_strand>TAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCNACCGGTTAAAG-ATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728980" ref_strand="+" ref_description="SGN-E728980 [LA19CD04]">
      <seq>atctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagtttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132422" g_stop="132344" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="228" r_length="149" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="400" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="455" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="587" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129812" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="625" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E728980" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132422" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAG-TTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTG</genome_strand>
        <mrna_strand>ATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573243" ref_strand="+" ref_description="SGN-E573243 [32524]">
      <seq>ctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcaggtagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacgtacgcagggtgtgcttggtatcaacggacagatcatgcttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132382" g_stop="132344" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="187" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="359" r_length="172" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="414" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="546" r_length="132" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129813" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="583" r_length="37" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E573243" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132382" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACT</genome_strand>
        <mrna_strand>CTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGTAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACGTACGCAG...........................................................................................................GGTGTGCTTGGTATCAACGGACAGATCATGCTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450167" ref_strand="+" ref_description="SGN-E450167 [cSTS-8-H17]">
      <seq>atctttgacaaaccctttctcccctgtcccaatcgaactcttcactgcctctcatttgtatctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgttacttangcagggtgtgctcggtatcaaagtaaagatcatgcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132481" g_stop="132344" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="286" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="458" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="513" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="645" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129815" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="680" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E450167" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132481" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGACAAACCCTTTCTCCCTTGTCCTAATCCAACTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGA</genome_strand>
        <mrna_strand>ATCTTTGACAAACCCTTTCTCCCCTGTCCCAATCGAACTCTTCACTGCCTCTCATTTGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGTTACTTANGCAG...........................................................................................................GGTGTGCTCGGTATCAAAGTAAAGATCATGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444210" ref_strand="+" ref_description="SGN-E444210 [cSTA-42-G17]">
      <seq>ggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttaggcatgtgctacttaggcagggtgtgcttggtatcaaagtcaagatcatgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132412" g_stop="132344" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="217" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="389" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="444" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="576" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129816" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="610" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E444210" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132412" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTG</genome_strand>
        <mrna_strand>GGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACTTAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279518" ref_strand="+" ref_description="SGN-E279518 [cLER-5-I12]">
      <seq>tcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatcaaagtcaagatcatgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132381" g_stop="132344" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="186" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="358" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="413" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="545" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129816" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="579" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E279518" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132381" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATCAAAGTCAAGATCATGCTTG</genome_strand>
        <mrna_strand>TCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATCAAAGTCAAGATCATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310211" ref_strand="+" ref_description="SGN-E310211 [cLEZ-8-J6]">
      <seq>tctgcctcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctactaaggcagggtgtgcttggtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132438" g_stop="132344" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="243" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="415" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="470" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="602" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129835" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="617" r_length="15" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E310211" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132438" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTATC</genome_strand>
        <mrna_strand>TCTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACTAAGGCAG...........................................................................................................GGTGTGCTTGGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413711" ref_strand="+" ref_description="SGN-E413711 [STM-18-G4]">
      <seq>aaagagcccaacttctaacctgccttaaatctttgacaaaccctttctcctctatactcatcgaactcttctttgcctcttacttgtatctgctagcggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgttangcatgtgctacttangcagggtgtgcttggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132509" g_stop="132344" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="314" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="486" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="541" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="673" r_length="132" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129836" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="687" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E413711" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132509" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGCCCAACTAGTAACCTGCCTTAAATCTTTGACAAACCCTTTCTCCCTTGTCCTAATCCAACTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGTAT</genome_strand>
        <mrna_strand>AAAGAGCCCAACTTCTAACCTGCCTTAAATCTTTGACAAACCCTTTCTCCTCTATACTCATCGAACTCTTCTTTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTTANGCATGTGCTACTTANGCAG...........................................................................................................GGTGTGCTTGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248087" ref_strand="+" ref_description="SGN-E248087 [cLEF-47-P1]">
      <seq>atcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctacttangcagggtgtgctcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132422" g_stop="132344" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="227" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="399" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="454" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129957" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="586" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129849" g_stop="129838" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="598" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E248087" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132422" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129957"/>
          <exon e_start="129849" e_stop="129838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAGGTTAGTATCTTGTCTTGATAGAGTTTTACTGATCTGTTGACTTATTGTTATATCTGTGCTGCAGCTTTGTTATTGTTATTTAACATTGCTACTACTTTACTTCATAGGGTGTGCTCGGT</genome_strand>
        <mrna_strand>ATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTANGCAG...........................................................................................................GGTGTGCTCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557863" ref_strand="+" ref_description="SGN-E557863 [16729]">
      <seq>ctcttacttgtatctgctagcggcggcagatgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgccgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtggcaagtccatgaagttaaggatggttacatgatttcttctggccaaccgggttaaagaatacattgatgcagctgttaagcatgtgctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132433" g_stop="132344" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="239" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="412" r_length="173" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="467" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129963" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="593" r_length="126" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E557863" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132433" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATTTGTATCTTCCATCGGCCGCAG-TGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTG-CGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACC-TGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTT</genome_strand>
        <mrna_strand>CTCTTACTTGTATCTGCTAGCGGCGGCAGATGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGGCAAGTCCATGAAG-TTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGGTTAAAGAATACATTGATGCAGCTGTTAAGCATGTGCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322991" ref_strand="+" ref_description="SGN-E322991 [cTOB-30-N5]">
      <seq>tatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagattgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggcaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattatggccactcgtactcagaacgttcttggtgaaacaggtaggagaattacggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataagggtctctgtgccattgctcacgcagagtctctgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgcaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtgtaacgacggttatatgatttcttctggacaacctgttaaagatacattgatgctgctgctacgcatgtgctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132423" g_stop="132344" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="229" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="401" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="456" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129963" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="581" r_length="125" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E322991" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132423" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGG-AGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTT</genome_strand>
        <mrna_strand>TATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................ATTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGCAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTATGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACAGGTAGGAGAATTACGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAAGGGTCTCTGTGCCATTGCTCACGCAGAGTCTCTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGCAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTGTAACGACGGTTATATGATTTCTTCTGGACAACCTGTTAAAG-ATACATTGATGCTGCTGCTACGCATGTGCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448753" ref_strand="+" ref_description="SGN-E448753 [cSTS-4-I16]">
      <seq>ctcatttgtatctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagcttcgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132431" g_stop="132344" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="236" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="408" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="463" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129964" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="588" r_length="125" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E448753" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132431" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACT</genome_strand>
        <mrna_strand>CTCATTTGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTTCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449109" ref_strand="+" ref_description="SGN-E449109 [cSTS-5-K4]">
      <seq>ctcatttgtatctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagcttcgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132431" g_stop="132344" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="236" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="408" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="463" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129964" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="588" r_length="125" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E449109" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132431" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACT</genome_strand>
        <mrna_strand>CTCATTTGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTTCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300111" ref_strand="+" ref_description="SGN-E300111 [cLEW-11-O8]">
      <seq>ttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcagcatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132426" g_stop="132344" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="231" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="403" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="458" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129964" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="583" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E300111" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132426" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACT</genome_strand>
        <mrna_strand>TTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAGCATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323617" ref_strand="+" ref_description="SGN-E323617 [cTOC-2-H8]">
      <seq>tcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagtttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132394" g_stop="132344" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="200" r_length="149" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="372" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="427" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129964" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="552" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E323617" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132394" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTT-TTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACT</genome_strand>
        <mrna_strand>TCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358622" ref_strand="+" ref_description="SGN-E358622 [cLHT-22-G17]">
      <seq>atggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagtagaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggcaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagttaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagcttcgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggccaacctgttaaagaatacattgatgctgctgttaggcatgtgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132376" g_stop="132344" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="181" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="353" r_length="172" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="408" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129964" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="533" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E358622" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132376" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACT</genome_strand>
        <mrna_strand>ATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTAGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGCAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTTAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTTCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304457" ref_strand="+" ref_description="SGN-E304457 [cLEX-12-P5]">
      <seq>attagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132361" g_stop="132344" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="166" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="338" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="393" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129964" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="518" r_length="125" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E304457" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132361" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACT</genome_strand>
        <mrna_strand>ATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298072" ref_strand="+" ref_description="SGN-E298072 [cLEW-12-E9]">
      <seq>atttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132428" g_stop="132344" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="233" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="405" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="460" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129965" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="584" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E298072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132428" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTAC</genome_strand>
        <mrna_strand>ATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212968" ref_strand="+" ref_description="SGN-E212968 [cLEC-72-I17]">
      <seq>ttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatgggtatatgatttcttctggacaacctgttaaagaatacattgatgctgctggtaggcatgtgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132419" g_stop="132344" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="224" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="396" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="451" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129965" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="575" r_length="124" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E212968" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132419" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTAC</genome_strand>
        <mrna_strand>TTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGGTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGGTAGGCATGTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308124" ref_strand="+" ref_description="SGN-E308124 [cLEY-14-K7]">
      <seq>tcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatgggtatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132394" g_stop="132344" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="199" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="371" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="426" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129965" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="550" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E308124" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132394" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTAC</genome_strand>
        <mrna_strand>TCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGGTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441381" ref_strand="+" ref_description="SGN-E441381 [cSTA-30-O23]">
      <seq>ctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaacctgttaaagaatacattgatgcagctgttaggcatgtgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132382" g_stop="132344" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="187" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="359" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="414" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129965" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="538" r_length="124" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E441381" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132382" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTAC</genome_strand>
        <mrna_strand>CTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAACCTGTTAAAGAATACATTGATGCAGCTGTTAGGCATGTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277438" ref_strand="+" ref_description="SGN-E277438 [cLER-3-L9]">
      <seq>atggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatgttctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132376" g_stop="132344" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="181" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="353" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="408" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129965" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="532" r_length="124" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E277438" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132376" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTAC</genome_strand>
        <mrna_strand>ATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATGTTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335212" ref_strand="+" ref_description="SGN-E335212 [cTOE-1-C23]">
      <seq>tcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132365" g_stop="132344" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="170" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="342" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="397" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129965" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="521" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E335212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132365" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTAC</genome_strand>
        <mrna_strand>TCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321068" ref_strand="+" ref_description="SGN-E321068 [cTOB-13-C21]">
      <seq>tctctgcctcttacttgtatctgctagcgggggcagtgagtctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaagcatgttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132440" g_stop="132344" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.876"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="245" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="417" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="472" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129966" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="595" r_length="123" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E321068" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132440" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTA</genome_strand>
        <mrna_strand>TCTCTGCCTCTTACTTGTATCTGCTAGCGGGGGCAGTGAGTCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAAGCATGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725731" ref_strand="+" ref_description="SGN-E725731 [LA05CA10]">
      <seq>cagagaatcaatatcaaaccctaatctgggcgatggcgacgcctcatattagtaaaaaacgaaggtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggagaatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacanattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgtttaaagatacattgatgctgctgttaggcatgtgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132407" g_stop="132344" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="213" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="385" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="440" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129966" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="563" r_length="123" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E725731" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132407" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGAATCAATATCAAACCCTAATCTCAAC-ATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTA</genome_strand>
        <mrna_strand>CAGAGAATCAATATCAAACCCTAATCTGGGCGATGGCGACGCCTCATATTAGTAAAAAACGAAGG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGAATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACANATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTTAAAGATACATTGATGCTGCTGTTAGGCATGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277515" ref_strand="+" ref_description="SGN-E277515 [cLER-3-J15]">
      <seq>tcatttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgctgctgttaggcatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132430" g_stop="132344" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="235" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="407" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="462" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129968" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="583" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E277515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132430" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGC</genome_strand>
        <mrna_strand>TCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343128" ref_strand="+" ref_description="SGN-E343128 [cTOF-17-G6]">
      <seq>tcttctctgcctcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaaagaatacattgatgcagctgtaaggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132443" g_stop="132344" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="248" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="420" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="475" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129971" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="593" r_length="118" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E343128" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132443" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATG</genome_strand>
        <mrna_strand>TCTTCTCTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGCAGCTGTAAGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287830" ref_strand="+" ref_description="SGN-E287830 [cLES-19-N15]">
      <seq>ttcactgcctctcatttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggacaacctgttaaagaatacattgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132441" g_stop="132344" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="246" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="418" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="473" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129984" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="578" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E287830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132441" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCT</genome_strand>
        <mrna_strand>TTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347730" ref_strand="+" ref_description="SGN-E347730 [cTOF-26-A12]">
      <seq>tgcctctcatttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctgcacaacctgttaaagaatacattgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132436" g_stop="132344" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="241" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="413" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="468" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129984" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="573" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E347730" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132436" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCT</genome_strand>
        <mrna_strand>TGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGCACAACCTGTTAAAGAATACATTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447497" ref_strand="+" ref_description="SGN-E447497 [cSTA-26-D12]">
      <seq>gaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacgtcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaagcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaagatggttacatgatttcttctggccaaccggttaaagaatacattgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132522" stop="129685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132222" g_stop="132111" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="284" r_length="172" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="339" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130088" g_stop="129985" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="443" r_length="104" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E447497" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132222" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGC</genome_strand>
        <mrna_strand>GAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACGTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAAGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAAGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E583715" ref_strand="+" ref_description="SGN-E583715 [9536]">
      <seq>acgaggcttacttgtatctagctagcggcggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtacagatggagttaattgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagcccagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtctaaggatggttacatgatttcttctggccaaccggttaaagaatacattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132413" g_stop="132344" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="98" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="243" r_length="145" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="415" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="470" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="129987" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="572" r_length="102" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E583715" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132413" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="129987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGAT</genome_strand>
        <mrna_strand>CGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTA-CAGATGGAG--TTAATTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCCAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTCTAAGGATGGTTACATGATTTCTTCTGGCCAACCGGTTAAAGAATACATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257417" ref_strand="+" ref_description="SGN-E257417 [cLEG-45-K24]">
      <seq>ctgctagcggcggcagtgaatctatctcaaaccctaatctctttatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttctggccaaccggttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132420" g_stop="132344" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="225" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="397" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="452" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="130000" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="541" r_length="89" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E257417" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132420" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="130000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAA</genome_strand>
        <mrna_strand>CTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCTTTATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTCTGGCCAACCGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E588905" ref_strand="+" ref_description="SGN-E588905 [42467]">
      <seq>tgctcatttgtatctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttacatgatttcttctggccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132433" g_stop="132344" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="238" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="410" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="465" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="130007" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="547" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E588905" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132433" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="130007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAAC</genome_strand>
        <mrna_strand>TGCTCATTTGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTACATGATTTCTTCTGGCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485615" ref_strand="+" ref_description="SGN-E485615 [cSTE-18-F2]">
      <seq>ggcttacttgtatctgctagcggcggcggcagtgaatcaatatcaaaccctaatctcaacatggcaacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacgtcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaacggatgcgaggtgattgttantggaaagctccgtgctcagcgtgccaagtccatgaagtttaaagatggttacatgatttcttctggccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132413" g_stop="132344" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="93" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="241" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="413" r_length="172" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="468" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="130008" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="549" r_length="81" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E485615" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132413" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="130008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAA</genome_strand>
        <mrna_strand>CGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCAACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACGTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAACGGATGCGAG.......................................................................................GTGATTGTTANTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAAGATGGTTACATGATTTCTTCTGGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325936" ref_strand="+" ref_description="SGN-E325936 [cTOC-12-D17]">
      <seq>actgcctctcatttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggatggttatatgatttcttctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132438" g_stop="132344" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="243" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="415" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="470" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="130010" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="549" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E325936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132438" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="130010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGAC</genome_strand>
        <mrna_strand>ACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202759" ref_strand="+" ref_description="SGN-E202759 [cLEB-1-L11]">
      <seq>gcacgagaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaggacggttacatgatttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132408" g_stop="132344" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="214" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="386" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="441" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="130015" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="515" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E202759" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132408" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="130015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCA-GTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTC</genome_strand>
        <mrna_strand>GCACGAGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGACGGTTACATGATTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474664" ref_strand="+" ref_description="SGN-E474664 [cSTB-37-E24]">
      <seq>cttacttgtatctgctagcggcggcagtgaatcaatatcaaaccctaatctcaacatggcaacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtttaaagatggttacatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132431" g_stop="132344" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="236" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="408" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="463" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="130021" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="531" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E474664" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132431" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="130021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGAT</genome_strand>
        <mrna_strand>CTTACTTGTATCTGCTAGCGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCAACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAAGATGGTTACATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584620" ref_strand="+" ref_description="SGN-E584620 [10447]">
      <seq>atcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagctgtgccaagttccattgaaggtttaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132401" g_stop="132344" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="206" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="379" r_length="173" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="434" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="130033" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="494" r_length="60" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E584620" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132401" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="130033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAAC-AATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGC-GTGCCAAG-TCCA-TGAA-GTTTAAGGA</genome_strand>
        <mrna_strand>ATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCTGTGCCAAGTTCCATTGAAGGTTTAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270613" ref_strand="+" ref_description="SGN-E270613 [cLEM-6-A21]">
      <seq>ctcgtgccgtccaactcttctctgcctcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132459" g_stop="132344" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="263" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="435" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="490" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="130038" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="541" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E270613" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132459" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="130038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTCCTAATCCAACTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTT</genome_strand>
        <mrna_strand>CTCGTGCCG-TCCAACTCTTCTCTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568177" ref_strand="+" ref_description="SGN-E568177 [12418]">
      <seq>tatcaaaccctaatctcaacatggcgacgcctcagattattaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttggctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagcttcgtgctcagcgtgccaagtccatgaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132396" g_stop="132344" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="201" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="374" r_length="173" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="429" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="130038" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="480" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E568177" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132396" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="130038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTT-GCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTT</genome_strand>
        <mrna_strand>TATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTATTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTTCGTGCTCAGCGTGCCAAGTCCATGAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312134" ref_strand="+" ref_description="SGN-E312134 [cTOA-11-K13]">
      <seq>tgcctctcatttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatgtgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132436" g_stop="132344" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="241" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="413" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="468" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="130039" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="518" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E312134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132436" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="130039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTT</genome_strand>
        <mrna_strand>TGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318963" ref_strand="+" ref_description="SGN-E318963 [cTOB-14-H15]">
      <seq>tcttctctgcctcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132443" g_stop="132344" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="248" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="420" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="475" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="130041" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="523" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E318963" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132443" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="130041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAG</genome_strand>
        <mrna_strand>TCTTCTCTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324131" ref_strand="+" ref_description="SGN-E324131 [cTOC-4-C21]">
      <seq>ttctctgcctcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaagcagagtcactgcgatacaagttacttggaggacttgctgtccgaaaggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagtccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132441" g_stop="132344" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="246" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="418" r_length="172" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="473" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="130044" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="518" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E324131" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132441" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="130044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATG</genome_strand>
        <mrna_strand>TTCTCTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAAGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318828" ref_strand="+" ref_description="SGN-E318828 [cTOB-11-D14]">
      <seq>aactcttctctgcctcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaagcagagtcactgcgatacaagttacttggaggacttgctgtccgaaaggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtggaaagctccgtgctcagcgtgccaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132446" g_stop="132344" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="251" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="423" r_length="172" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="478" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="130049" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="518" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E318828" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132446" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="130049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGT</genome_strand>
        <mrna_strand>AACTCTTCTCTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAAGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466839" ref_strand="+" ref_description="SGN-E466839 [cPRO-26-C8]">
      <seq>gaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggaaaatggagccaagggatgccaagtgattggtaatggaaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="131524" stop="129867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131224" g_stop="131055" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="225" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130088" g_stop="130068" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="246" r_length="21" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E466839" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131224" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="130068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTGGAAAGCTC</genome_strand>
        <mrna_strand>GAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAAAATGGAGCCAAGGGATGCCAA.......................................................................................GTGATTGGTAATGGAAAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202745" ref_strand="+" ref_description="SGN-E202745 [cLEB-1-K12]">
      <seq>gcacgagaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgaggtgattgttagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132408" g_stop="132344" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="214" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="386" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="441" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130088" g_stop="130076" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="454" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E202745" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132408" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
          <exon e_start="130088" e_stop="130076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCA-GTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAGGTATGTCGGGTGTCATTTTCCTTCTCTATATCTATCTTCAATTAGATGTTCTTTGAATTTTTTTTACATGGGTCTCTTTTTCTTTAGGTGATTGTTAGTG</genome_strand>
        <mrna_strand>GCACGAGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG.......................................................................................GTGATTGTTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567172" ref_strand="+" ref_description="SGN-E567172 [11255]">
      <seq>tttgctcttacttgtatctgctagcggcggcagtgaatcaatatcaaagccctaattctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttcttaatttcacaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcacgagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132437" g_stop="132344" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.851"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="244" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="419" r_length="175" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130176" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="474" r_length="55" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E567172" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132437" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAA-CCCTAA-TCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTT-TTAATTTCA-AGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCA-GAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG</genome_strand>
        <mrna_strand>TTTGCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCAATATCAAAGCCCTAATTCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTCTTAATTTCACAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCACGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472344" ref_strand="+" ref_description="SGN-E472344 [cSTB-28-K10]">
      <seq>gcggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagccaagggatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132414" g_stop="132344" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="219" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="391" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130178" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="444" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E472344" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132414" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTG</genome_strand>
        <mrna_strand>GCGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGCCAAGGGATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275303" ref_strand="+" ref_description="SGN-E275303 [cLEN-9-B10]">
      <seq>gaatctatctcaaaccctaatctcaacatggcgacgcctcacattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagcgcttacaagagagctggcggaggatggatactcgtgagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagatgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggagttctgagatttgtcatggagagtggagccaaaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132403" g_stop="132344" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="208" r_length="148" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="380" r_length="172" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130180" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="431" r_length="51" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E275303" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132403" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATG</genome_strand>
        <mrna_strand>GAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCACATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGCGCTTACAAGAGAGCTGGCGGAGGATGGATACTCGTGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGATGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGAGTTCTGAGATTTGTCATGGAGAGTGGAGCCAAAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292799" ref_strand="+" ref_description="SGN-E292799 [cLET-11-G1]">
      <seq>gcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcatgcagagtcactgcgatacaaattacttggaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaatggagagtggagccaagggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132373" g_stop="132344" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="178" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="350" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130180" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="401" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E292799" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132373" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATG</genome_strand>
        <mrna_strand>GCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCATGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442262" ref_strand="+" ref_description="SGN-E442262 [cSTA-32-D15]">
      <seq>ggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcatgcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132412" g_stop="132344" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="217" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="389" r_length="172" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130189" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="431" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E442262" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132412" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGC</genome_strand>
        <mrna_strand>GGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCATGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467402" ref_strand="+" ref_description="SGN-E467402 [cSTB-48-N9]">
      <seq>cggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132410" g_stop="132344" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="215" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="387" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130189" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="429" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E467402" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132410" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGC</genome_strand>
        <mrna_strand>CGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330523" ref_strand="+" ref_description="SGN-E330523 [cTOD-8-A19]">
      <seq>tctcaaaccctattctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132396" g_stop="132344" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="201" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="373" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130189" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="415" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E330523" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132396" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGC</genome_strand>
        <mrna_strand>TCTCAAACCCTATTCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324155" ref_strand="+" ref_description="SGN-E324155 [cTOC-4-C18]">
      <seq>ttgtctgcctcttacttgtatgtgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaagcagagtcactgcgatacaagttacttggaggacttgctgtccgaaaggcttgctatggtgttctgagatttgtaatggagagtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132441" g_stop="132344" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="246" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="418" r_length="172" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130190" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="459" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E324155" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132441" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAG</genome_strand>
        <mrna_strand>TTGTCTGCCTCTTACTTGTATGTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAAGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318754" ref_strand="+" ref_description="SGN-E318754 [cTOB-11-C19]">
      <seq>tccaactcttctctgcctcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcataagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132449" g_stop="132344" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="254" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="426" r_length="172" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130191" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="466" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E318754" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132449" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAACTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGA</genome_strand>
        <mrna_strand>TCCAACTCTTCTCTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCATAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285863" ref_strand="+" ref_description="SGN-E285863 [cLES-5-L2]">
      <seq>gacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132371" g_stop="132344" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="176" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="348" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130191" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="388" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E285863" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132371" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGA</genome_strand>
        <mrna_strand>GACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281280" ref_strand="-" ref_description="SGN-E281280 [cLEL-1-G16](-)">
      <seq>gcacgagaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgccgctggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctgagatttgtaatggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132408" g_stop="132344" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="214" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="386" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130195" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="422" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E281280" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281280" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="132408" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCA-GTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAG</genome_strand>
        <mrna_strand>GCACGAGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCCGCTGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGAGATTTGTAATGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725452" ref_strand="+" ref_description="SGN-E725452 [LA03BH03]">
      <seq>cagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcatattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggagaatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatctttagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggataacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttgnaggacttgctgtccgaagggcttgctatggtgttctgcgatttgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132407" g_stop="132344" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="212" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="384" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130201" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="414" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E725452" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132407" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTGCGATTTGTAAT</genome_strand>
        <mrna_strand>CAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCATATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGAATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCTTTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGATAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGNAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTGCGATTTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584537" ref_strand="+" ref_description="SGN-E584537 [10364]">
      <seq>gcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagcttatttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtccgaagggcttgctatggtgttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="129912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132368" g_stop="132344" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="173" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131055" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="345" r_length="172" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130230" g_stop="130212" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="364" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E584537" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132368" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131055"/>
          <exon e_start="130230" e_stop="130212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAGGTCTGTTGTTTGGTTGCACTTGTTCCCTGCCTTAATTTTTCTTTGTTTGATTTTTGGAAGTCTCAGTTTTTCTTTCTTTTCTGACTTGAAAGCGATCGATCCCATCTATTTAAGAATCAGAGAAATATATTTATACCTGATGTCCTATTTCGATGAATCTAAGTGGGGAAATTTTTGATGACGTAAATACCTCTGAGGTAAACAAAACTCTGATAAAGATGTAGTTAATTAAAAACTGTACATATACAAAACAGGGGCGGATTTAGCAAGTGCTATGGGATGTCACGTGACACTGCTTCGTCGGAAAATTTTAAGAAATATGTGCAGTGTGAGAAGGGAAAAACAGATACATACTATATATTTGTATATATATGTGTGTGTGTGTGTGCTTGTGATGTTATATTGTTTATTTATTTTTTCATTTTTGAAAAATATCTTCCAATACGGTTGTGTATTTTTTGGGTCCCATTATGCATGCATCTAGGTAGTGGTGGTTTCCAAGATTTTCACCCAGGGGTTCAACTAATAAAAATGTAAAAAACAATGCTGAGTGTTCAACAGCCCCCCCCCCCCCCCCAGGGATCTGTCCCTGCATCTAGGTTTAGTCTGTAACAAATATACTAGATATAAAATATCTTCCCATATGGTGTTCCATGTAAAATGATTATTTGTTAGTTTAGTCAAATATTTATGTTGCGTGTTATTTCTTCAAGATTAGGTATTTTTTGTTGTAGTTCAATTTTCACGTCATGATCAAATTCCACAGATGTCTGCAACTCTGTAGTATTGTTGTTTTACTGAGCTTATCCTTTGTCATGATATAGGGCTTGCTATGGTGTTCTG</genome_strand>
        <mrna_strand>GCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTTATTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTGTCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGCTATGGTGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206585" ref_strand="+" ref_description="SGN-E206585 [cLEC-31-A16]">
      <seq>ctctgcctcttacttgtatctgctagcggcggcagtgaatctatctaaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgctgcggatggagttttttttgcggagttgaacgaactgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtacgaggatcatggagctgacttcagttgttcacaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcacgcagagtcactgcgatacaagttacttggaggacttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132439" g_stop="132344" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="244" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131062" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="409" r_length="165" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E206585" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132439" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTG</genome_strand>
        <mrna_strand>CTCTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTAAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGCTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAACTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTACGAGGATCATGGAGCTGACTTCAGTTGTTCACAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCACGCAGAGTCACTGCGATACAAGTTACTTGGAGGACTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250347" ref_strand="+" ref_description="SGN-E250347 [cLEG-6-C19]">
      <seq>ggatggagttttttttgcggagttgaacgaagtgcttactatagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcacggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctatgtgccattgctcatgcacagtcactgctatacaagttacttggaggacttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132250" g_stop="132111" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131226" g_stop="131062" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="305" r_length="165" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E250347" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132250" e_stop="132111"/>
          <exon e_start="131226" e_stop="131062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTG</genome_strand>
        <mrna_strand>GGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACTATAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCACGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTATGTGCCATTGCTCATGCACAGTCACTGCTATACAAGTTACTTGGAGGACTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239876" ref_strand="+" ref_description="SGN-E239876 [cLED-29-J8]">
      <seq>tactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132489" stop="130768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132189" g_stop="132111" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131226" g_stop="131068" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="238" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E239876" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132189" e_stop="132111"/>
          <exon e_start="131226" e_stop="131068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGAC</genome_strand>
        <mrna_strand>TACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277167" ref_strand="-" ref_description="SGN-E277167 [cLEL-3-D6](-)">
      <seq>cacgagattgtatcttccatcggccgcagtgaatcaatatcaaaccctaatgtaggatggcgacgcctcagattactaacaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaaattacttggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132433" g_stop="132344" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="237" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131070" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="394" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E277167" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277167" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="132433" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGG</genome_strand>
        <mrna_strand>CACGAGATTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATGT-AGGATGGCGACGCCTCAGATTACTAACAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325034" ref_strand="+" ref_description="SGN-E325034 [cTOC-13-O21]">
      <seq>aactcttctctggctcttacttgtatctgctagcggcggcagtgaatctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagcgcttacaagagagctggcggaggatggttactcgcgagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcangcagagtcactgcgatacaagttacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132446" g_stop="132344" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="251" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131073" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="405" r_length="154" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E325034" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132446" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGG</genome_strand>
        <mrna_strand>AACTCTTCTCTGGCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGCGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGCGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCANGCAGAGTCACTGCGATACAAGTTACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472612" ref_strand="+" ref_description="SGN-E472612 [cSTB-29-I8]">
      <seq>aaagagcccaacttctaacctgccttaaatctttgacaaaccctttctcctctatactcatcgaactcttctttgcctcttacttgtatctgctagcggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacagtgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcactgcgatacaagttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132509" g_stop="132344" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="314" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131074" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="467" r_length="153" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E472612" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132509" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGCCCAACTAGTAACCTGCCTTAAATCTTTGACAAACCCTTTCTCCCTTGTCCTAATCCAACTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTG</genome_strand>
        <mrna_strand>AAAGAGCCCAACTTCTAACCTGCCTTAAATCTTTGACAAACCCTTTCTCCTCTATACTCATCGAACTCTTCTTTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445951" ref_strand="+" ref_description="SGN-E445951 [cSTA-19-K24]">
      <seq>cgtttctaccctgtcccaagcgaactcttcactgcctctcattcgtatctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgctttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtctgtgtgccattgctcaagcagagtcactgcgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132468" g_stop="132344" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="273" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131085" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="415" r_length="142" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E445951" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132468" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTCCCTTGTCCTAATCCAACTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATA</genome_strand>
        <mrna_strand>CGTTTCTACCCTGTCCCAAGCGAACTCTTCACTGCCTCTCATTCGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGCTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTGTGTGCCATTGCTCAAGCAGAGTCACTGCGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200163" ref_strand="+" ref_description="SGN-E200163 [cLEB-7-B21]">
      <seq>gcacgagctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagggttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaaagtcaacaataggggtctctgtgccattgctcaggcagagtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132403" g_stop="132344" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="207" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131092" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="342" r_length="135" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E200163" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132403" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCAC</genome_strand>
        <mrna_strand>GCA-CGAGCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGGGTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300241" ref_strand="+" ref_description="SGN-E300241 [cLEW-17-F15]">
      <seq>cccgtgcgaactgatgccttcataatggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcggtttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctctgtgccattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132445" stop="130804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132162" g_stop="132111" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131226" g_stop="131104" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="175" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E300241" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132162" e_stop="132111"/>
          <exon e_start="131226" e_stop="131104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTC</genome_strand>
        <mrna_strand>CCCGTGCGAACTGATGCCTTCATAATGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGGTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443612" ref_strand="+" ref_description="SGN-E443612 [cSTA-39-I1]">
      <seq>tttgtatctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaataggggtcttgtgtgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132427" g_stop="132344" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="232" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131110" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="350" r_length="118" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E443612" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132427" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTC-TCTGTGCCA</genome_strand>
        <mrna_strand>TTTGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTTGTGTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238306" ref_strand="+" ref_description="SGN-E238306 [cLED-17-E13]">
      <seq>ttgtatcttccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaaacgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgcttacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagggccactcgtactcagaacgttcttggtgaaaaaggtaggagaattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgcagagaaagtcaacaataggggtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132426" g_stop="132344" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="231" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131117" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="341" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E238306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132426" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTC</genome_strand>
        <mrna_strand>TTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298274" ref_strand="+" ref_description="SGN-E298274 [cLEW-18-O8]">
      <seq>ttctctgcctcttacttgtatctgctagcggcggcagtgaagctatctcaaagcctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacacttgtgagctctatgctgagaaagtcaacaataggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132441" g_stop="132344" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="246" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131122" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="351" r_length="105" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E298274" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132441" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGG</genome_strand>
        <mrna_strand>TTCTCTGCCTCTTACTTGTATCTGCTAGCGGCGGCAGTGAAGCTATCTCAAAGCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTTGTGAGCTCTATGCTGAGAAAGTCAACAATAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444275" ref_strand="+" ref_description="SGN-E444275 [cSTA-42-G10]">
      <seq>catttgtatctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaatagtgttgagctctatgcagagaaagtcaacaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132429" g_stop="132344" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="234" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131124" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="337" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E444275" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132429" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAG</genome_strand>
        <mrna_strand>CATTTGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAATAGTGTTGAGCTCTATGCAGAGAAAGTCAACAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318926" ref_strand="+" ref_description="SGN-E318926 [cTOB-11-D2]">
      <seq>tctatctcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgttgcggatggagttttttttgcggagttgaacgaaatgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgtgcgaactgaaatcatcattagagccactcgtactcagaacgttcttggtgagaaaggtaggaggatcagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaacactgttgagctctatgctgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132400" g_stop="132344" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="205" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131136" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="296" r_length="91" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E318926" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132400" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAA</genome_strand>
        <mrna_strand>TCTATCTCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAATGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210130" ref_strand="+" ref_description="SGN-E210130 [cLEC-40-L5]">
      <seq>tcaaaccctaatcttaacatggcgacgcctcagattaataaaaagcgaaagtctgttgcggatggagttttttttgcggagttgaacgaagtgcttacaagagagctggcggaggatggttactcgggagttgaagttagggttactcccgcgcgaactgaaatcatcattagagccactcgttctcagaacgttcttggtgagaaaggtaggaggatcaaggagctgacttgagttgttcataagcgttttaatttcaaggaaaacactgttgagctctatgctgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132394" g_stop="132344" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="199" r_length="148" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131136" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="290" r_length="91" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E210130" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132394" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAA</genome_strand>
        <mrna_strand>TCAAACCCTAATCTTAACATGGCGACGCCTCAGATTAATAAAAAGCGAAAG.....................................................................................TCTGTTGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGCGCGAACTGAAATCATCATTAGAGCCACTCGTTCTCAGAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGGTAGGAGGATCAAGGAGCTGACTTGAGTTGTTCATAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400102" ref_strand="+" ref_description="SGN-E400102 [cSTC-4-H8]">
      <seq>ccgtattgaatcaatatcaaaccctaatctgaacatggttacgcctcagattattaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcataagcgttttaatttcatggaaaatagtgtcgagctctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132410" g_stop="132344" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="215" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131143" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="299" r_length="84" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E400102" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132410" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATG</genome_strand>
        <mrna_strand>CCGTATTGAATCAATATCAAACCCTAATCTGAACATGGTTACGCCTCAGATTATTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCATAAGCGTTTTAATTTCATGGAAAATAGTGTCGAGCTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443613" ref_strand="+" ref_description="SGN-E443613 [cSTA-39-I3]">
      <seq>tttgtatctgccatcggccgcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagttaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactccggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgttcagaagcgttttaatttcaaggaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132427" g_stop="132344" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="232" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131159" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="300" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E443613" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132427" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAAC</genome_strand>
        <mrna_strand>TTTGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTTAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCCGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447643" ref_strand="+" ref_description="SGN-E447643 [cSTA-28-I1]">
      <seq>ggcggcagtgaatcaatatcaaaccctaatctcaacatggcgacgcctcagattagtaaaaagcgaaagtttgtagcagatggagttttttttgcggagttgaacgaagtgctgacaaaagagctggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagagccactcgtactcaaaacgttcttggtgagaaaagtaggaggatcagggagctgacttcagttgttcaaaagcgttttaatttcaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132412" g_stop="132344" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="217" r_length="148" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131161" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="283" r_length="66" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E447643" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132412" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAA</genome_strand>
        <mrna_strand>GGCGGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCAGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAAAGAGCTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGAGCCACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAAGTAGGAGGATCAGGGAGCTGACTTCAGTTGTTCAAAAGCGTTTTAATTTCAAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557582" ref_strand="+" ref_description="SGN-E557582 [16403]">
      <seq>tgcctctcatttgtatctgccatcggccgcagtgaatcaatatcaaaccctaattctcaacataggcgacgcctcagattagtaaaaagcgaaagtttgtagcggatggagttttttttgcggagttgaacgaagtgctgacaagagagttggcggaggatggttactcgggagttgaagttagggttactcccatgcgaactgaaatcatcattagggctactcgtactcaaaacgttcttggtgaaaaaggtaggaggattagggagctgacttcagttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0230N10-xPm7m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0230N10.2" temp_strand="-" temp_description="C00HBa0230N10.2  CU457764.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0230N10 sequenced_by:sanger upload_account_name:uk">
        <position start="132542" stop="130887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132436" g_stop="132344" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132258" g_stop="132111" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="243" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131226" g_stop="131187" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="283" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0230N10.2" gen_strand="-" ref_id="SGN-E557582" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0230N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132436" e_stop="132344"/>
          <exon e_start="132258" e_stop="132111"/>
          <exon e_start="131226" e_stop="131187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAA-TCTCAACAT-GGCGACGCCTCAGATTAGTAAAAAACGAAAGGTACGTCAGTTCAACTTCTCGCTGTGATTTTAGATCCAACTGAATATTTATAGTATGCCATGATTTGATTTTTGTATGTGTCTAGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTGGTACATAAATATATATATAAGCTAATTTTTTCTTAATGAAATTCATCGACACACTTATAAGTGACTCCATCTGTAAGAGTTGCAGCCATCAGCTAGCAGACTAAATGTAATTAAACATTCTACAGAATAGCAACTGTATATATTTGCAAATGTACAGCAGACAAGTCTATCTTTCCATGAAAGAAGGCGTGTTTAATCTGTGTATATGAACTCTAGTAATCAATTATTAGTTTGGTGTAGTTCTGACTCTTTAATGGAGTTAGTTGAGGTGTATGCTGCTATAGCTCTGACACCACAATTATCATAACAAAATTATATACCCTTGATGAAGCTTATATTATGCATTTGTTAATTAAGGGTCTAAATTTTGTAGAATGTTGTAGAACTTAAGTAAAGATTCTGAATGCTGTAACATTACATTACTATTTTTTTTTAGAAAAAGATTCTGAATGCTGTGTCGTGCAATGCAGATTACTCTGTTTATCCCATTTATCTGCCTTAGTTGGACACGTTGCTCAAAATAAATGTCAGTAGTTTTTATTTAGATAGAATTGGGTTCCAAAATGGACGGAAGATGATACTTGCAGAGATTAAACTTCTCCCAGTGTGATGTTATGTCCTGGGGTACTTTTTTTAATCATAAAATACAAAATATCAAAGATGGTACATGAAAAAGGTATTTATGTAAAAAATTTATTCTAAAAAAAGGAAGCCTTTTATGTAGAAACGGGAGGTACTTTGGGATAACTTACTAAAATAGGATATTTGTTTGAATCGGAGGCAAATGAATCATCCTTGCTGATTATTGGATGAGCTGGAAGTAGGTGTGCTTTAACGGATTGATTGTAGTAGTAGTTGAATAATGTTGTGTGTGTATTTTCCAGGTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGT</genome_strand>
        <mrna_strand>TGCCTCTCATTTGTATCTGCCATCGGCCGCAGTGAATCAATATCAAACCCTAATTCTCAACATAGGCGACGCCTCAGATTAGTAAAAAGCGAAAG.....................................................................................TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTGACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCATGCGAACTGAAATCATCATTAGGGCTACTCGTACTCAAAACGTTCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGGTAGGAGGATTAGGGAGCTGACTTCAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>243</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3676" PGL_stop="3282"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3676" e_stop="3282"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="3676" e_stop="3282" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3676" stop="3282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3672" stop="3310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAGTAATACTGTTGGATCAAAAGTGCAGAAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGTTTTTCAAGTGGTTGCAATGATCGAGAAGTTTCCTCCTTCGTGGAATGATTTCAAGTATTATCTAAAGCAAAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCAGCTCAAGATTGTGGAAGATAATAAAAACACCGAAAAGAAGTAGCGTAAGAGTTCAACAATCATTAGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACAGGCAGAAGTTAGAACAGTCCAAGAAGAAATTCAAAGGCAACTGTTACAATTGTGGCAAGGCTGGTCATAGGTCTTCTGA</gDNA_template>
            <first_frame> D  S  N  T  V  G  S  K  V  Q  K  L  Q  L  I  L  H  D  L  I  A  E  D  M  V  V  N  E  V  F  Q  V  V  A  M  I  E  K  F  P  P  S  W  N  D  F  K  Y  Y  L  K  Q  K  R  K  E  M  K  L  E  D  L  V  I  Q  L  K  I  V  E  D  N  K  N  T  E  K  K  *  R  K  S  S  T  I  I  R  V  N  I  V  E  E  A  P  T  K  D  K  K  R  K  K  S  N  R  Q  K  L  E  Q  S  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  S  S   </first_frame>
            <second_frame>  I  V  I  L  L  D  Q  K  C  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  *  M  K  F  F  K  W  L  Q  *  S  R  S  F  L  L  R  G  M  I  S  S  I  I  *  S  K  S  V  K  K  *  S  L  K  I  L  *  F  S  S  R  L  W  K  I  I  K  T  P  K  R  S  S  V  R  V  Q  Q  S  L  E  L  I  L  L  K  K  L  L  P  K  T  K  R  E  R  S  P  T  G  R  S  *  N  S  P  R  R  N  S  K  A  T  V  T  I  V  A  R  L  V  I  G  L  L  </second_frame>
            <third_frame>   *  *  Y  C  W  I  K  S  A  E  T  S  T  Y  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  S  G  C  N  D  R  E  V  S  S  F  V  E  *  F  Q  V  L  S  K  A  K  A  *  R  N  E  A  *  R  S  C  D  S  A  Q  D  C  G  R  *  *  K  H  R  K  E  V  A  *  E  F  N  N  H  *  S  *  Y  C  *  R  S  S  Y  Q  R  Q  K  E  K  E  V  Q  Q  A  E  V  R  T  V  Q  E  E  I  Q  R  Q  L  L  Q  L  W  Q  G  W  S  *  V  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3676" stop="3440"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSNTVGSKVQKLQLILHDLIAEDMVVNEVFQVVAMIEKFPPSWNDFKYYLKQKRKEMKLEDLVIQLKIVEDNKNTEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="31725" PGL_stop="39593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35318" e_stop="38027"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="35318" e_stop="38027" e_length="2710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35318" stop="36030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35318" stop="35913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35318" stop="35843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35389" stop="36068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35389" stop="35747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35838" stop="36496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35907" stop="36668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35907" stop="36567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36310" stop="36640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36517" stop="37075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36601" stop="37390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36677" stop="37374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37238" stop="37952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37241" stop="37904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37596" stop="38027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCTGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAATCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACACATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAAAGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGATCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTTACCCACCGAAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCTGAGGTCTCCGCTTCCGACCGCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGACCGCTTTGGTGACCACCATTACCTCGACCACCGCGTCCTCCAGAATAATGGTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCTCCACATCCATAACACTCTATAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATAGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAATTCTCCTCCCTTTCGTAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTTCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTTCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGGCTGACATCCTACCTTTCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAACATGTGACCGCCACCATATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGGAAACCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGTCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGCTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  C  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  L  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  *  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  V  D  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  *  G  L  R  F  R  P  P  R  E  S  I  T  M  G  P  F  V  C  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  P  T  A  L  V  T  T  I  T  S  T  T  A  S  S  R  I  M  V  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  F  G  T  I  P  P  N  M  S  S  L  S  T  S  I  T  L  Y  R  V  K  H  G  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  R  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  F  S  S  L  S  *  P  L  *  C  R  C  H  G  E  F  I  W  L  H  F  F  H  L  Y  H  E  I  Y  H  F  L  E  G  F  F  R  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  G  G  I  S  G  *  C  T  K  L  S  L  I  C  I  G  *  H  P  T  F  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  R  W  L  T  L  N  M  *  P  P  P  Y  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  E  T  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  E  I  G  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  A  L  </first_frame>
            <second_frame>  N  P  L  T  N  L  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  I  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  H  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  L  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  S  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  K  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  I  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  L  P  T  E  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  E  V  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  L  W  *  P  P  L  P  R  P  P  R  P  P  E  *  W  S  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  I  E  S  S  M  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  N  S  S  G  F  T  S  S  T  S  T  T  K  S  T  T  S  W  K  D  F  S  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  A  D  I  L  P  F  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  P  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  V  I  V  A  A  C  C  T  S  E  T  G  G  A  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </second_frame>
            <third_frame>   I  P  *  Q  I  C  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  S  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  T  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  L  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  *  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  K  D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  L  E  L  H  Q  N  Q  P  F  L  R  *  P  N  L  H  K  C  *  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  Y  P  P  K  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  L  R  S  P  L  P  T  A  Q  G  K  H  N  N  G  P  F  R  L  F  V  R  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  P  D  R  F  G  D  H  H  Y  L  D  H  R  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  S  V  W  D  N  S  S  *  Y  V  Q  S  L  H  I  H  N  T  L  *  S  Q  A  W  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  *  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  I  L  L  P  F  V  T  S  L  M  S  M  P  W  *  I  H  L  A  S  L  L  P  P  L  P  R  N  L  P  L  L  G  R  I  F  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  G  W  H  I  W  I  V  H  E  T  *  P  H  M  H  W  L  T  S  Y  L  S  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  P  L  V  D  T  Q  H  V  T  A  T  I  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  G  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  S  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  L  D  Q  T  T  H  *  D  R  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  H  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37059" stop="37448"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRNLFDVDAMVNSSGFTSSTSTTKSTTSWKDFSVAATCKAEIRNSDLNPFTKRRIRSCGLKQSWVAYLDSARNLASYALADILPFSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35483" stop="35821"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYIINKYDHKEIQIWLKNPVHQTHERSRGIRKTKRHHYKFVMPIPGSKSSLWHICCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37751" stop="38026"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRCLTLIRQPTEIGENLIDHLWGRLGWQSLILHLFIFPILPFSYYFLSRWRSHCPSIRWLGARPLPLEDVLPRPLPRPLAAAL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36749" stop="37003"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITPTALVTTITSTTASSRIMVSTMTTSTSSYWGSITLFGTIPPNMSSLSTSITLYRVKHGSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36045" stop="36290"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31725" e_stop="32253"/>
            <exon e_start="39235" e_stop="39593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.227" acc_prob="0.000" e_score="0.908"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="31725" e_stop="32253" e_length="529"/>
          </exon>
          <intron i_serial="1" don_prob="0.227" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32254" i_stop="39234" i_length="6981"/>
          </intron>
          <exon e_serial="2" e_score="0.936">
            <gDNA_exon_boundary e_start="39235" e_stop="39593" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31725" stop="32061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31896" stop="32253"/>
              <exon start="39235" stop="39593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGACCAACTCAAAATAGAAAACAGTATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCCCAATACCATACTCATTTTGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTAAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTAACACTCCGATCCCCTAAATCTACGTGTCGGTTCATGACACCCGATCCCCTAAATCTACGTGTCAGTTCGTGACACCCGATCCCTTAATTCTACGTGTCGGTTTGTGACACCCGATCCCTTAATTCTACGTGTCGGTTCGTGACACCCGATTTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCAGTTCATGACACCCGATCCCCTAATTCTACGTGTCG : GTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATCTCATTCTATCAACTCATCAAGCCTTCTCCCTTACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATCATCAAAAAGAGATTAGGTTTTTATCAAGATTTGGGATTCAATAACTTCATCATGCTTAATATAATCACAATTATATAATCACGTTCATGCATGCATACAATTAAGCACATAGCAGGGTTTACAATACTATCAATACATATCATTCTCTATTAAGAGTTTACTACGAAAGCATGAAAACCATAACCTACCTCCACCGAAGACTA</gDNA_template>
            <first_frame> T  E  *  I  S  S  T  N  S  K  *  K  T  V  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  P  N  T  I  L  I  L  E  S  C  S  L  D  *  V  Y  *  H  L  *  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  Y  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  L  N  S  T  C  R  F  V  T  P  D  P  L  I  L  R  V  G  S  *  H  P  I  S  *  F  Y  V  S  V  R  D  T  R  S  P  N  S  T  C  Q  F  M  T  P  D  P  L  I  L  R  V   : G  S  *  H  P  I  P  *  F  Y  V  S  V  R  D  T  R  S  P  N  L  I  L  S  T  H  Q  A  F  S  L  T  K  A  S  S  I  S  L  L  *  F  I  K  P  S  P  L  P  R  H  H  H  Q  K  E  I  R  F  L  S  R  F  G  I  Q  *  L  H  H  A  *  Y  N  H  N  Y  I  I  T  F  M  H  A  Y  N  *  A  H  S  R  V  Y  N  T  I  N  T  Y  H  S  L  L  R  V  Y  Y  E  S  M  K  T  I  T  Y  L  H  R  R  L </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  K  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  A  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  P  I  P  Y  S  F  W  N  H  V  H  *  I  E  Y  I  N  I  F  K  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  I  P  L  V  S  V  R  N  T  P  I  P  *  I  Y  V  S  V  H  D  T  R  S  P  K  S  T  C  Q  F  V  T  P  D  P  L  I  L  R  V  G  L  *  H  P  I  P  *  F  Y  V  S  V  R  D  T  R  F  P  N  S  T  C  R  F  V  T  P  D  P  L  I  L  R  V  S  S  *  H  P  I  P  *  F  Y  V  S  :  V  R  D  T  R  S  P  N  S  T  C  R  F  V  T  P  D  P  L  I  S  F  Y  Q  L  I  K  P  S  P  L  P  R  H  H  Q  S  H  Y  F  S  S  S  S  L  L  P  Y  Q  G  I  I  I  K  K  R  L  G  F  Y  Q  D  L  G  F  N  N  F  I  M  L  N  I  I  T  I  I  *  S  R  S  C  M  H  T  I  K  H  I  A  G  F  T  I  L  S  I  H  I  I  L  Y  *  E  F  T  T  K  A  *  K  P  *  P  T  S  T  E  D   </second_frame>
            <third_frame>   *  V  D  I  I  D  Q  L  K  I  E  N  S  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  H  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  F  G  I  M  F  I  R  L  S  I  L  T  S  L  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  F  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  R  F  M  T  P  D  P  L  N  L  R  V  S  S  *  H  P  I  P  *  F  Y  V  S  V  C  D  T  R  S  L  N  S  T  C  R  F  V  T  P  D  F  L  I  L  R  V  G  S  *  H  P  I  P  *  F  Y  V  S  V  H  D  T  R  S  P  N  S  T  C  R :   F  V  T  P  D  P  L  I  L  R  V  G  S  *  H  P  I  P  *  S  H  S  I  N  S  S  S  L  L  P  Y  Q  G  I  I  N  L  I  T  L  V  H  Q  A  F  S  L  T  K  A  S  S  S  K  R  D  *  V  F  I  K  I  W  D  S  I  T  S  S  C  L  I  *  S  Q  L  Y  N  H  V  H  A  C  I  Q  L  S  T  *  Q  G  L  Q  Y  Y  Q  Y  I  S  F  S  I  K  S  L  L  R  K  H  E  N  H  N  L  P  P  P  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32242" stop="32253"/>
                    <exon start="39235" stop="39468"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYVSVRDTRSPNSTCRFVTPDPLISFYQLIKPSPLPRHHQSHYFSSSSLLPYQGIIIKKRLGFYQDLGFNNFIMLNIITII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="33838" e_stop="34014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="33838" e_stop="34014" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33838" stop="34014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCTCAATGGCCACCAAACTTTATCACACATGCGCGAAGCATATCCTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  F  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  L  N  G  H  Q  T  L  S  H  M  R  E  A  Y  P  P  T  L  E  S  F  S  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  S  M  A  T  K  L  Y  H  T  C  A  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0230N10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="32668" PGL_stop="32058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32668" e_stop="32058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="32668" e_stop="32058" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32668" stop="32058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAAGAAAATAGAAAGAACAAGAGAGAGAGGGAGAGTCGAACGAGGAAGAAAGAAGAACAAAGCTTTGGGAATTTGCTTGCTTGATCACTAGTCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCGTAGTAAACTCTTAATAGAGAATGATATGTATTAATAGTATTGTAAACCCTGCTATATGCTTAATTGTATGCATGCATGAACGTGATTATATAATTATGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTGATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCATGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGAAATCGGGTGTCACGAACCGACACGTAGAATTAAGGGATCGGGTGTCACAAACCGACACGTAGAATTAAGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGAT</gDNA_template>
            <first_frame> N  K  E  N  R  K  N  K  R  E  R  E  S  R  T  R  K  K  E  E  Q  S  F  G  N  L  L  A  *  S  L  V  F  G  G  G  R  L  W  F  S  C  F  R  S  K  L  L  I  E  N  D  M  Y  *  *  Y  C  K  P  C  Y  M  L  N  C  M  H  A  *  T  *  L  Y  N  Y  D  Y  I  K  H  D  E  V  I  E  S  Q  I  L  I  K  T  *  S  L  F  D  D  D  A  L  V  R  E  K  A  *  *  T  K  V  M  R  L  M  M  P  W  *  G  R  R  L  D  E  L  I  E  *  D  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  M  N  *  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  E  I  G  C  H  E  P  T  R  R  I  K  G  S  G  V  T  N  R  H  V  E  L  R  D  R  V  S  R  T  D  T  *  I  *  G   </first_frame>
            <second_frame>  I  K  K  I  E  R  T  R  E  R  G  R  V  E  R  G  R  K  K  N  K  A  L  G  I  C  L  L  D  H  *  S  S  V  E  V  G  Y  G  F  H  A  F  V  V  N  S  *  *  R  M  I  C  I  N  S  I  V  N  P  A  I  C  L  I  V  C  M  H  E  R  D  Y  I  I  M  I  I  L  S  M  M  K  L  L  N  P  K  S  *  *  K  P  N  L  F  L  M  M  M  P  W  *  G  R  R  L  D  E  L  K  *  *  D  *  *  C  L  G  K  G  E  G  L  M  S  *  *  N  E  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  *  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  K  S  G  V  T  N  R  H  V  E  L  R  D  R  V  S  Q  T  D  T  *  N  *  G  I  G  C  H  E  L  T  R  R  F  R  G  </second_frame>
            <third_frame>   *  R  K  *  K  E  Q  E  R  E  G  E  S  N  E  E  E  R  R  T  K  L  W  E  F  A  C  L  I  T  S  L  R  W  R  *  V  M  V  F  M  L  S  *  *  T  L  N  R  E  *  Y  V  L  I  V  L  *  T  L  L  Y  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  *  A  *  *  S  Y  *  I  P  N  L  D  K  N  L  I  S  F  *  *  *  C  L  G  K  G  E  G  L  M  N  *  S  N  E  I  D  D  A  L  V  R  E  K  A  *  *  V  D  R  M  R  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  L  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  N  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  K  P  T  R  R  I  K  G  S  G  V  T  N  *  H  V  D  L  G  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0230N10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="37334" PGL_stop="35890"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37334" e_stop="37162"/>
            <exon e_start="36417" e_stop="35890"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.942"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="37334" e_stop="37162" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37161" i_stop="36418" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="36417" e_stop="35890" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37334" stop="37162"/>
              <exon start="36417" stop="35890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGGTAGGATGTCAGCCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGAAAAATCCTTCCAAG : AAATGGTTGATTTTGATGTAATTCTAGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCTTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGAGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> E  R  *  D  V  S  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  R  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  F  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  G  T  T  S  R  V  I  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  *  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  K  G  R  M  S  A  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  E  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  E  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  Q  P  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  K  N  P  S  K  :  K  W  L  I  L  M  *  F  *  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  L  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  R  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37333" stop="37162"/>
                    <exon start="36417" stop="35891"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGRMSANAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATEKSFQEMVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDESFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="37960" PGL_stop="37408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37960" e_stop="37408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="37960" e_stop="37408" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37960" stop="37408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTGTCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGACTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGGTTTCCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATATGGTGGCGGTCACATGTTGAGTGTCAACCAACGGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  A  P  P  V  S  E  V  Q  H  A  A  T  M  T  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  G  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  I  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </first_frame>
            <second_frame>  P  S  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  M  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  P  I  S  V  G  C  L  I  K  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  *  L  L  V  W  M  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  V  S  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  Y  G  G  G  H  M  L  S  V  N  Q  R  R  H  H  L  *  L  G  P  H  S </second_frame>
            <third_frame>   L  A  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  K  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  Q  W  V  V  *  S  R  S  G  T  S  S  V  F  C  T  S  T  S  G  F  R  G  T  T  C  S  H  Y  D  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  P  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  M  V  A  V  T  C  *  V  S  T  N  G  G  T  T  Y  D  L  G  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37954" stop="37409"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSDTRAVTPPPTEEVIREGEDGENEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPAPPVSEVQHAATMTPRMDASLDIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYGFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKIWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="39137" PGL_stop="38659"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39137" e_stop="38659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="39137" e_stop="38659" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39137" stop="38900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39136" stop="38659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACAAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAATAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTTAAATATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTAGGGTATTGGGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATACTGTTTTCTATTTTGAGTTGGCCAATGATATCTACTCAGTACCCCTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGTCAGTCTTCGTCACATCGGATCTTCAGGGTTAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  Q  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  I  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  L  N  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  *  G  I  G  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  A  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  C  F  L  F  *  V  G  Q  *  Y  L  L  S  T  P  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  S  H  R  I  F  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  K  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  E  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  *  I  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  R  V  L  G  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  T  V  F  Y  F  E  L  A  N  D  I  Y  S  V  P  L  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  V  S  L  R  H  I  G  S  S  G  L  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  N  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  F  K  Y  V  N  I  L  N  L  M  N  M  I  P  K  *  V  G  Y  W  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  C  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  S  V  F  V  T  S  D  L  Q  G  *  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38866" stop="38660"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYLVYTVFYFELANDIYSVPLFCTDPYFYVFFLFIVECSKRAVIFDSTVTLVSLRHIGSSGLANASSLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="39593" PGL_stop="39193"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39593" e_stop="39193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="39593" e_stop="39193" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39593" stop="39193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTGATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGAGTGTCACGAACCGACACG</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  H  A  F  V  V  N  S  *  *  R  M  I  C  I  D  S  I  V  N  P  A  M  C  L  I  V  C  M  H  E  R  D  Y  I  I  V  I  I  L  S  M  M  K  L  L  N  P  K  S  *  *  K  P  N  L  F  L  M  M  M  P  W  *  G  R  R  L  D  E  L  K  *  *  D  *  *  C  L  G  K  G  E  G  L  M  S  *  *  N  E  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  E  C  H  E  P  T   </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  F  M  L  S  *  *  T  L  N  R  E  *  Y  V  L  I  V  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  *  A  *  *  S  Y  *  I  P  N  L  D  K  N  L  I  S  F  *  *  *  C  L  G  K  G  E  G  L  M  N  *  S  N  E  I  D  D  A  L  V  R  E  K  A  *  *  V  D  R  M  R  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  L  T  R  R  I  R  G  S  S  V  T  N  R  H  </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  S  C  F  R  S  K  L  L  I  E  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  H  A  *  T  *  L  Y  N  C  D  Y  I  K  H  D  E  V  I  E  S  Q  I  L  I  K  T  *  S  L  F  D  D  D  A  L  V  R  E  K  A  *  *  T  K  V  M  R  L  M  M  P  W  *  G  R  R  L  D  E  L  I  E  *  D  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  *  H  V  E  L  G  D  R  V  S  R  T  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0230N10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="41761" PGL_stop="62746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41761" e_stop="42040"/>
            <exon e_start="42335" e_stop="42374"/>
            <exon e_start="46393" e_stop="46463"/>
            <exon e_start="60647" e_stop="60741"/>
            <exon e_start="61522" e_stop="61589"/>
            <exon e_start="62058" e_stop="62168"/>
            <exon e_start="62370" e_stop="62746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.885" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.855" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.673" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41761" e_stop="42040" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="0.885" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42335" e_stop="42374" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46393" e_stop="46463" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.855">
            <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60647" e_stop="60741" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61522" e_stop="61589" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.915" acc_prob="0.996">
            <gDNA_intron_boundary i_start="61590" i_stop="62057" i_length="468"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62058" e_stop="62168" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.673">
            <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="62370" e_stop="62746" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41761" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61589"/>
              <exon start="62058" stop="62168"/>
              <exon start="62370" stop="62556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41818" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41823" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61589"/>
              <exon start="62058" stop="62168"/>
              <exon start="62370" stop="62404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41829" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41829" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41832" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61589"/>
              <exon start="62058" stop="62168"/>
              <exon start="62370" stop="62440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41833" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61589"/>
              <exon start="62058" stop="62168"/>
              <exon start="62370" stop="62394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41833" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41836" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41837" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61589"/>
              <exon start="62058" stop="62168"/>
              <exon start="62370" stop="62555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41842" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61589"/>
              <exon start="62058" stop="62168"/>
              <exon start="62370" stop="62441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41842" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61589"/>
              <exon start="62058" stop="62168"/>
              <exon start="62370" stop="62385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41950" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61589"/>
              <exon start="62058" stop="62168"/>
              <exon start="62370" stop="62662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589646" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61538" stop="61589"/>
              <exon start="62058" stop="62168"/>
              <exon start="62370" stop="62746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62407" stop="62746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62495" stop="62746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338172" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTTTCGGAGCTGGATAAGTCTTATCATTAGACTGCTCCTCTCTGTTGCCAAACATTCCGATTAGATGACAATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACG : ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG : GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG : AGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCA : GTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAG : TGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAG : TCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAGGAAGAAGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGTAAAAAATTACAAAAGCCTCTTTCTTGATCAGGTCAATGTTTTTGCATTGCTCATTAGTTGATGGGCAGAGAGAGTGTTACTCTTTACTCTCTTCATTGATGCAGGTCATTCAAAGTATTTAAGTAATTAGTGTTGTTTTATCTCTCTACTGAATCGTTTCATATATGCATATTTACTAATGTAAAAATCACACCATATGTACATTTAAGGCTATATATATCGAGTTATAAACATACTTTTAAA</gDNA_template>
            <first_frame> Y  F  R  S  W  I  S  L  I  I  R  L  L  L  S  V  A  K  H  S  D  *  M  T  I  T  V  Y  T  P  A  H  V  T  T  S  V  L  N  S  R  L  L  R  S  P  P  R  R  T  L  S  T  A  R  Y  H  R  N  F  C  L  T  C  V  L  I  P  E  T  R  R  E  S  R  R  L  V  N  I  A  L  G  V  L  L  Q  W  L  A  L  P  N   : D  A  V  G  A  S  P  F  D  K  Y  V  K  R :   K  Q  L  D  P  L  E  A  Y  V  P  A  V  L  L  A  G  V  Q  I  K  E  L   : E  K  S  L  E  I  D  Q  P  K  Y  G  D  C  R  N  I  L  R  S  G  P  A  S  S  L  R  V  N  I  R  A  :  V  A  Q  Y  A  A  D  G  G  N  G  K  L  A  F  S  D  V  D  E  C  L  S :   A  L  E  G  L  D  S  L  L  L  R  A  S  R  K  D  P  G  A  S  I  D  S  M  K  A  Q  I  A  T  A  L  N  A  L  D  S :   L  L  K  T  V  P  T  D  V  L  E  K  G  K  S  V  A  D  S  Y  F  F  A  G  E  E  E  V  A  P  E  R  L  D  P  E  L  K  Q  L  E  S  I  L  *  K  I  T  K  A  S  F  L  I  R  S  M  F  L  H  C  S  L  V  D  G  Q  R  E  C  Y  S  L  L  S  S  L  M  Q  V  I  Q  S  I  *  V  I  S  V  V  L  S  L  Y  *  I  V  S  Y  M  H  I  Y  *  C  K  N  H  T  I  C  T  F  K  A  I  Y  I  E  L  *  T  Y  F  *  </first_frame>
            <second_frame>  I  F  G  A  G  *  V  L  S  L  D  C  S  S  L  L  P  N  I  P  I  R  *  Q  L  P  C  T  P  L  R  M  L  P  P  A  S  *  I  P  G  S  S  A  L  R  H  D  G  H  C  R  R  R  D  I  T  A  I  F  A  *  L  A  C  *  Y  R  R  Q  G  G  K  A  D  D  W  S  T  *  P  L  G  S  C  F  N  G  *  L  Y  L  T  :  M  Q  *  E  L  A  L  L  T  S  M  *  K   : G  N  S  L  I  H  W  R  L  M  Y  Q  L  C  C  *  L  G  C  R  L  R  N  *  :  R  N  P  *  R  L  I  N  L  N  M  E  I  A  G  I  Y  C  V  L  V  L  H  H  L  F  V  S  I  F  E  Q :   *  H  N  T  Q  L  M  V  A  M  V  N  *  L  S  V  M  L  M  S  V  *   : V  H  W  K  D  L  T  R  C  F  C  V  H  Q  E  R  I  Q  G  P  Q  L  T  Q  *  R  H  K  L  L  L  P  *  M  H  W  T   : V  F  L  K  L  S  Q  L  M  C  L  K  R  E  S  L  *  L  I  H  I  F  L  L  V  R  K  K  *  H  L  R  D  W  T  L  S  *  S  N  W  N  L  Y  C  K  K  L  Q  K  P  L  S  *  S  G  Q  C  F  C  I  A  H  *  L  M  G  R  E  S  V  T  L  Y  S  L  H  *  C  R  S  F  K  V  F  K  *  L  V  L  F  Y  L  S  T  E  S  F  H  I  C  I  F  T  N  V  K  I  T  P  Y  V  H  L  R  L  Y  I  S  S  Y  K  H  T  F  K </second_frame>
            <third_frame>   F  S  E  L  D  K  S  Y  H  *  T  A  P  L  C  C  Q  T  F  R  L  D  D  N  Y  R  V  H  P  C  A  C  Y  H  Q  R  L  K  F  P  A  P  P  L  S  A  T  T  D  I  V  D  G  E  I  S  P  Q  F  L  L  N  L  R  V  N  T  G  D  K  A  G  K  Q  T  I  G  Q  H  S  P  W  G  L  A  S  M  A  S  S  T  *  R :   C  S  R  S  *  P  F  *  Q  V  C  E  K  :  E  T  A  *  S  T  G  G  L  C  T  S  C  A  A  S  W  G  A  D  *  G  I  R :   E  I  L  R  D  *  S  T  *  I  W  R  L  P  E  Y  I  A  F  W  S  C  I  I  S  S  C  Q  Y  S  S   : S  S  T  I  R  S  *  W  W  Q  W  *  I  S  F  Q  *  C  *  *  V  S  E  :  C  I  G  R  T  *  L  V  A  F  A  C  I  K  K  G  S  R  G  L  N  *  L  N  E  G  T  N  C  Y  C  L  K  C  I  G  Q  :  S  S  *  N  C  P  N  *  C  A  *  K  G  K  V  C  S  *  F  I  F  F  C  W  *  G  R  S  S  T  *  E  T  G  P  *  A  E  A  T  G  I  Y  T  V  K  N  Y  K  S  L  F  L  D  Q  V  N  V  F  A  L  L  I  S  *  W  A  E  R  V  L  L  F  T  L  F  I  D  A  G  H  S  K  Y  L  S  N  *  C  C  F  I  S  L  L  N  R  F  I  Y  A  Y  L  L  M  *  K  S  H  H  M  Y  I  *  G  Y  I  Y  R  V  I  N  I  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41827" stop="42040"/>
                    <exon start="42335" stop="42374"/>
                    <exon start="46393" stop="46463"/>
                    <exon start="60647" stop="60741"/>
                    <exon start="61522" stop="61589"/>
                    <exon start="62058" stop="62168"/>
                    <exon start="62370" stop="62505"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTITVYTPAHVTTSVLNSRLLRSPPRRTLSTARYHRNFCLTCVLIPETRRESRRLVNIALGVLLQWLALPNDAVGASPFDKYVKRKQLDPLEAYVPAVLLAGVQIKELEKSLEIDQPKYGDCRNILRSGPASSLRVNIRAVAQYAADGGNGKLAFSDVDECLSALEGLDSLLLRASRKDPGASIDSMKAQIATALNALDSLLKTVPTDVLEKGKSVADSYFFAGEEEVAPERLDPELKQLESIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41818" e_stop="42040"/>
            <exon e_start="42335" e_stop="42374"/>
            <exon e_start="46393" e_stop="46463"/>
            <exon e_start="60647" e_stop="60741"/>
            <exon e_start="61522" e_stop="61589"/>
            <exon e_start="61895" e_stop="62168"/>
            <exon e_start="62370" e_stop="62746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.885" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.855" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.763" e_score="0.971"/>
          <exon-intron don_prob="0.976" acc_prob="0.673" e_score="0.898"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41818" e_stop="42040" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.885" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42335" e_stop="42374" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46393" e_stop="46463" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.855">
            <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60647" e_stop="60741" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780"/>
          </intron>
          <exon e_serial="5" e_score="0.971">
            <gDNA_exon_boundary e_start="61522" e_stop="61589" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.915" acc_prob="0.763">
            <gDNA_intron_boundary i_start="61590" i_stop="61894" i_length="305"/>
          </intron>
          <exon e_serial="6" e_score="0.898">
            <gDNA_exon_boundary e_start="61895" e_stop="62168" e_length="274"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.673">
            <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="62370" e_stop="62746" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41818" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41829" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41829" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41833" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41836" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41919" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61589"/>
              <exon start="61895" stop="62168"/>
              <exon start="62370" stop="62445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62407" stop="62746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62495" stop="62746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338172" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCGATTAGATGACAATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACG : ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG : GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG : AGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCA : GTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAG : ATGGAACACCTTCAAATTGATGACAAGAGGAGCATGCTTAGTATGTACATCAGTAAATAAAAGGACCAATTTTAACCAAAATGCAAATTGGACCATCATTGCATGTCAACTTTGTTTTTTTAGTCACACATGATGCTATTTGTGTTTTTAATCTTTCACGCAGTGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAG : TCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAGGAAGAAGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGTAAAAAATTACAAAAGCCTCTTTCTTGATCAGGTCAATGTTTTTGCATTGCTCATTAGTTGATGGGCAGAGAGAGTGTTACTCTTTACTCTCTTCATTGATGCAGGTCATTCAAAGTATTTAAGTAATTAGTGTTGTTTTATCTCTCTACTGAATCGTTTCATATATGCATATTTACTAATGTAAAAATCACACCATATGTACATTTAAGGCTATATATATCGAGTTATAAACATACTTTTAAA</gDNA_template>
            <first_frame> S  D  *  M  T  I  T  V  Y  T  P  A  H  V  T  T  S  V  L  N  S  R  L  L  R  S  P  P  R  R  T  L  S  T  A  R  Y  H  R  N  F  C  L  T  C  V  L  I  P  E  T  R  R  E  S  R  R  L  V  N  I  A  L  G  V  L  L  Q  W  L  A  L  P  N   : D  A  V  G  A  S  P  F  D  K  Y  V  K  R :   K  Q  L  D  P  L  E  A  Y  V  P  A  V  L  L  A  G  V  Q  I  K  E  L   : E  K  S  L  E  I  D  Q  P  K  Y  G  D  C  R  N  I  L  R  S  G  P  A  S  S  L  R  V  N  I  R  A  :  V  A  Q  Y  A  A  D  G  G  N  G  K  L  A  F  S  D  V  D  E  C  L  R :   W  N  T  F  K  L  M  T  R  G  A  C  L  V  C  T  S  V  N  K  R  T  N  F  N  Q  N  A  N  W  T  I  I  A  C  Q  L  C  F  F  S  H  T  *  C  Y  L  C  F  *  S  F  T  Q  C  I  G  R  T  *  L  V  A  F  A  C  I  K  K  G  S  R  G  L  N  *  L  N  E  G  T  N  C  Y  C  L  K  C  I  G  Q  :  S  S  *  N  C  P  N  *  C  A  *  K  G  K  V  C  S  *  F  I  F  F  C  W  *  G  R  S  S  T  *  E  T  G  P  *  A  E  A  T  G  I  Y  T  V  K  N  Y  K  S  L  F  L  D  Q  V  N  V  F  A  L  L  I  S  *  W  A  E  R  V  L  L  F  T  L  F  I  D  A  G  H  S  K  Y  L  S  N  *  C  C  F  I  S  L  L  N  R  F  I  Y  A  Y  L  L  M  *  K  S  H  H  M  Y  I  *  G  Y  I  Y  R  V  I  N  I  L  L   </first_frame>
            <second_frame>  P  I  R  *  Q  L  P  C  T  P  L  R  M  L  P  P  A  S  *  I  P  G  S  S  A  L  R  H  D  G  H  C  R  R  R  D  I  T  A  I  F  A  *  L  A  C  *  Y  R  R  Q  G  G  K  A  D  D  W  S  T  *  P  L  G  S  C  F  N  G  *  L  Y  L  T  :  M  Q  *  E  L  A  L  L  T  S  M  *  K   : G  N  S  L  I  H  W  R  L  M  Y  Q  L  C  C  *  L  G  C  R  L  R  N  *  :  R  N  P  *  R  L  I  N  L  N  M  E  I  A  G  I  Y  C  V  L  V  L  H  H  L  F  V  S  I  F  E  Q :   *  H  N  T  Q  L  M  V  A  M  V  N  *  L  S  V  M  L  M  S  V  *   : D  G  T  P  S  N  *  *  Q  E  E  H  A  *  Y  V  H  Q  *  I  K  G  P  I  L  T  K  M  Q  I  G  P  S  L  H  V  N  F  V  F  L  V  T  H  D  A  I  C  V  F  N  L  S  R  S  A  L  E  G  L  D  S  L  L  L  R  A  S  R  K  D  P  G  A  S  I  D  S  M  K  A  Q  I  A  T  A  L  N  A  L  D  S :   L  L  K  T  V  P  T  D  V  L  E  K  G  K  S  V  A  D  S  Y  F  F  A  G  E  E  E  V  A  P  E  R  L  D  P  E  L  K  Q  L  E  S  I  L  *  K  I  T  K  A  S  F  L  I  R  S  M  F  L  H  C  S  L  V  D  G  Q  R  E  C  Y  S  L  L  S  S  L  M  Q  V  I  Q  S  I  *  V  I  S  V  V  L  S  L  Y  *  I  V  S  Y  M  H  I  Y  *  C  K  N  H  T  I  C  T  F  K  A  I  Y  I  E  L  *  T  Y  F  *  </second_frame>
            <third_frame>   R  L  D  D  N  Y  R  V  H  P  C  A  C  Y  H  Q  R  L  K  F  P  A  P  P  L  S  A  T  T  D  I  V  D  G  E  I  S  P  Q  F  L  L  N  L  R  V  N  T  G  D  K  A  G  K  Q  T  I  G  Q  H  S  P  W  G  L  A  S  M  A  S  S  T  *  R :   C  S  R  S  *  P  F  *  Q  V  C  E  K  :  E  T  A  *  S  T  G  G  L  C  T  S  C  A  A  S  W  G  A  D  *  G  I  R :   E  I  L  R  D  *  S  T  *  I  W  R  L  P  E  Y  I  A  F  W  S  C  I  I  S  S  C  Q  Y  S  S   : S  S  T  I  R  S  *  W  W  Q  W  *  I  S  F  Q  *  C  *  *  V  S  E  :  M  E  H  L  Q  I  D  D  K  R  S  M  L  S  M  Y  I  S  K  *  K  D  Q  F  *  P  K  C  K  L  D  H  H  C  M  S  T  L  F  F  *  S  H  M  M  L  F  V  F  L  I  F  H  A  V  H  W  K  D  L  T  R  C  F  C  V  H  Q  E  R  I  Q  G  P  Q  L  T  Q  *  R  H  K  L  L  L  P  *  M  H  W  T   : V  F  L  K  L  S  Q  L  M  C  L  K  R  E  S  L  *  L  I  H  I  F  L  L  V  R  K  K  *  H  L  R  D  W  T  L  S  *  S  N  W  N  L  Y  C  K  K  L  Q  K  P  L  S  *  S  G  Q  C  F  C  I  A  H  *  L  M  G  R  E  S  V  T  L  Y  S  L  H  *  C  R  S  F  K  V  F  K  *  L  V  L  F  Y  L  S  T  E  S  F  H  I  C  I  F  T  N  V  K  I  T  P  Y  V  H  L  R  L  Y  I  S  S  Y  K  H  T  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41827" stop="42040"/>
                    <exon start="42335" stop="42374"/>
                    <exon start="46393" stop="46463"/>
                    <exon start="60647" stop="60741"/>
                    <exon start="61522" stop="61589"/>
                    <exon start="61895" stop="62027"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTITVYTPAHVTTSVLNSRLLRSPPRRTLSTARYHRNFCLTCVLIPETRRESRRLVNIALGVLLQWLALPNDAVGASPFDKYVKRKQLDPLEAYVPAVLLAGVQIKELEKSLEIDQPKYGDCRNILRSGPASSLRVNIRAVAQYAADGGNGKLAFSDVDECLRWNTFKLMTRGACLVCTSVNKRTNFNQNANWTIIACQLCFFSHT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="41818" e_stop="42040"/>
            <exon e_start="42335" e_stop="42374"/>
            <exon e_start="46393" e_stop="46463"/>
            <exon e_start="47827" e_stop="47842"/>
            <exon e_start="52590" e_stop="52607"/>
            <exon e_start="54402" e_stop="54423"/>
            <exon e_start="54996" e_stop="55005"/>
            <exon e_start="55070" e_stop="55116"/>
            <exon e_start="60647" e_stop="60745"/>
            <exon e_start="61522" e_stop="61589"/>
            <exon e_start="62058" e_stop="62168"/>
            <exon e_start="62370" e_stop="62746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.885" acc_prob="0.994" e_score="0.956"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="0.688"/>
          <exon-intron don_prob="0.000" acc_prob="0.623" e_score="0.556"/>
          <exon-intron don_prob="0.000" acc_prob="0.231" e_score="0.636"/>
          <exon-intron don_prob="0.000" acc_prob="0.029" e_score="0.800"/>
          <exon-intron don_prob="0.000" acc_prob="0.855" e_score="0.574"/>
          <exon-intron don_prob="0.571" acc_prob="0.996" e_score="0.949"/>
          <exon-intron don_prob="0.915" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.673" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="41818" e_stop="42040" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.885" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42335" e_stop="42374" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46393" e_stop="46463" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.792">
            <gDNA_intron_boundary i_start="46464" i_stop="47826" i_length="1363"/>
          </intron>
          <exon e_serial="4" e_score="0.688">
            <gDNA_exon_boundary e_start="47827" e_stop="47842" e_length="16"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="47843" i_stop="52589" i_length="4747"/>
          </intron>
          <exon e_serial="5" e_score="0.556">
            <gDNA_exon_boundary e_start="52590" e_stop="52607" e_length="18"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.623">
            <gDNA_intron_boundary i_start="52608" i_stop="54401" i_length="1794"/>
          </intron>
          <exon e_serial="6" e_score="0.636">
            <gDNA_exon_boundary e_start="54402" e_stop="54423" e_length="22"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.231">
            <gDNA_intron_boundary i_start="54424" i_stop="54995" i_length="572"/>
          </intron>
          <exon e_serial="7" e_score="0.800">
            <gDNA_exon_boundary e_start="54996" e_stop="55005" e_length="10"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.029">
            <gDNA_intron_boundary i_start="55006" i_stop="55069" i_length="64"/>
          </intron>
          <exon e_serial="8" e_score="0.574">
            <gDNA_exon_boundary e_start="55070" e_stop="55116" e_length="47"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.855">
            <gDNA_intron_boundary i_start="55117" i_stop="60646" i_length="5530"/>
          </intron>
          <exon e_serial="9" e_score="0.949">
            <gDNA_exon_boundary e_start="60647" e_stop="60745" e_length="99"/>
          </exon>
          <intron i_serial="9" don_prob="0.571" acc_prob="0.996">
            <gDNA_intron_boundary i_start="60746" i_stop="61521" i_length="776"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="61522" e_stop="61589" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.915" acc_prob="0.996">
            <gDNA_intron_boundary i_start="61590" i_stop="62057" i_length="468"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="62058" e_stop="62168" e_length="111"/>
          </exon>
          <intron i_serial="11" don_prob="0.976" acc_prob="0.673">
            <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201"/>
          </intron>
          <exon e_serial="12" e_score="0.987">
            <gDNA_exon_boundary e_start="62370" e_stop="62746" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41818" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41836" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46393" stop="46463"/>
              <exon start="47827" stop="47842"/>
              <exon start="52590" stop="52607"/>
              <exon start="54402" stop="54423"/>
              <exon start="54996" stop="55005"/>
              <exon start="55070" stop="55116"/>
              <exon start="60647" stop="60745"/>
              <exon start="61522" stop="61589"/>
              <exon start="62058" stop="62168"/>
              <exon start="62370" stop="62568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61538" stop="61589"/>
              <exon start="62058" stop="62168"/>
              <exon start="62370" stop="62746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62407" stop="62746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62495" stop="62746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338172" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCGATTAGATGACAATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACG : ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG : GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG : GGGTAACTTTTGGCAG : GTATTGGAAACAAAGTTA : GCTGATGTGATTTGTTTCCAAG : ATCACACAAC : CTTTAAACTGAAGATTTTGGTGACATTGGTGACAGAGTGAAGAACCG : AGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCAGTAA : GTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAG : TGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAG : TCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAGGAAGAAGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGTAAAAAATTACAAAAGCCTCTTTCTTGATCAGGTCAATGTTTTTGCATTGCTCATTAGTTGATGGGCAGAGAGAGTGTTACTCTTTACTCTCTTCATTGATGCAGGTCATTCAAAGTATTTAAGTAATTAGTGTTGTTTTATCTCTCTACTGAATCGTTTCATATATGCATATTTACTAATGTAAAAATCACACCATATGTACATTTAAGGCTATATATATCGAGTTATAAACATACTTTTAAA</gDNA_template>
            <first_frame> S  D  *  M  T  I  T  V  Y  T  P  A  H  V  T  T  S  V  L  N  S  R  L  L  R  S  P  P  R  R  T  L  S  T  A  R  Y  H  R  N  F  C  L  T  C  V  L  I  P  E  T  R  R  E  S  R  R  L  V  N  I  A  L  G  V  L  L  Q  W  L  A  L  P  N   : D  A  V  G  A  S  P  F  D  K  Y  V  K  R :   K  Q  L  D  P  L  E  A  Y  V  P  A  V  L  L  A  G  V  Q  I  K  E  L   : G  V  T  F  G  R :   Y  W  K  Q  S  * :   L  M  *  F  V  S  K  :  I  T  Q   : P  L  N  *  R  F  W  *  H  W  *  Q  S  E  E  P  :  R  N  P  *  R  L  I  N  L  N  M  E  I  A  G  I  Y  C  V  L  V  L  H  H  L  F  V  S  I  F  E  Q  *  :  V  A  Q  Y  A  A  D  G  G  N  G  K  L  A  F  S  D  V  D  E  C  L  S :   A  L  E  G  L  D  S  L  L  L  R  A  S  R  K  D  P  G  A  S  I  D  S  M  K  A  Q  I  A  T  A  L  N  A  L  D  S :   L  L  K  T  V  P  T  D  V  L  E  K  G  K  S  V  A  D  S  Y  F  F  A  G  E  E  E  V  A  P  E  R  L  D  P  E  L  K  Q  L  E  S  I  L  *  K  I  T  K  A  S  F  L  I  R  S  M  F  L  H  C  S  L  V  D  G  Q  R  E  C  Y  S  L  L  S  S  L  M  Q  V  I  Q  S  I  *  V  I  S  V  V  L  S  L  Y  *  I  V  S  Y  M  H  I  Y  *  C  K  N  H  T  I  C  T  F  K  A  I  Y  I  E  L  *  T  Y  F  *  </first_frame>
            <second_frame>  P  I  R  *  Q  L  P  C  T  P  L  R  M  L  P  P  A  S  *  I  P  G  S  S  A  L  R  H  D  G  H  C  R  R  R  D  I  T  A  I  F  A  *  L  A  C  *  Y  R  R  Q  G  G  K  A  D  D  W  S  T  *  P  L  G  S  C  F  N  G  *  L  Y  L  T  :  M  Q  *  E  L  A  L  L  T  S  M  *  K   : G  N  S  L  I  H  W  R  L  M  Y  Q  L  C  C  *  L  G  C  R  L  R  N  *  :  G  *  L  L  A   : G  I  G  N  K  V   : S  *  C  D  L  F  P  R :   S  H  N  :  L  *  T  E  D  F  G  D  I  G  D  R  V  K  N  R :   E  I  L  R  D  *  S  T  *  I  W  R  L  P  E  Y  I  A  F  W  S  C  I  I  S  S  C  Q  Y  S  S  S  K :   *  H  N  T  Q  L  M  V  A  M  V  N  *  L  S  V  M  L  M  S  V  *   : V  H  W  K  D  L  T  R  C  F  C  V  H  Q  E  R  I  Q  G  P  Q  L  T  Q  *  R  H  K  L  L  L  P  *  M  H  W  T   : V  F  L  K  L  S  Q  L  M  C  L  K  R  E  S  L  *  L  I  H  I  F  L  L  V  R  K  K  *  H  L  R  D  W  T  L  S  *  S  N  W  N  L  Y  C  K  K  L  Q  K  P  L  S  *  S  G  Q  C  F  C  I  A  H  *  L  M  G  R  E  S  V  T  L  Y  S  L  H  *  C  R  S  F  K  V  F  K  *  L  V  L  F  Y  L  S  T  E  S  F  H  I  C  I  F  T  N  V  K  I  T  P  Y  V  H  L  R  L  Y  I  S  S  Y  K  H  T  F  K </second_frame>
            <third_frame>   R  L  D  D  N  Y  R  V  H  P  C  A  C  Y  H  Q  R  L  K  F  P  A  P  P  L  S  A  T  T  D  I  V  D  G  E  I  S  P  Q  F  L  L  N  L  R  V  N  T  G  D  K  A  G  K  Q  T  I  G  Q  H  S  P  W  G  L  A  S  M  A  S  S  T  *  R :   C  S  R  S  *  P  F  *  Q  V  C  E  K  :  E  T  A  *  S  T  G  G  L  C  T  S  C  A  A  S  W  G  A  D  *  G  I  R :   G  N  F  W  Q  :  V  L  E  T  K  L  :  A  D  V  I  C  F  Q   : D  H  T  T :   F  K  L  K  I  L  V  T  L  V  T  E  *  R  T   : E  K  S  L  E  I  D  Q  P  K  Y  G  D  C  R  N  I  L  R  S  G  P  A  S  S  L  R  V  N  I  R  A  V   : S  S  T  I  R  S  *  W  W  Q  W  *  I  S  F  Q  *  C  *  *  V  S  E  :  C  I  G  R  T  *  L  V  A  F  A  C  I  K  K  G  S  R  G  L  N  *  L  N  E  G  T  N  C  Y  C  L  K  C  I  G  Q  :  S  S  *  N  C  P  N  *  C  A  *  K  G  K  V  C  S  *  F  I  F  F  C  W  *  G  R  S  S  T  *  E  T  G  P  *  A  E  A  T  G  I  Y  T  V  K  N  Y  K  S  L  F  L  D  Q  V  N  V  F  A  L  L  I  S  *  W  A  E  R  V  L  L  F  T  L  F  I  D  A  G  H  S  K  Y  L  S  N  *  C  C  F  I  S  L  L  N  R  F  I  Y  A  Y  L  L  M  *  K  S  H  H  M  Y  I  *  G  Y  I  Y  R  V  I  N  I  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41827" stop="42040"/>
                    <exon start="42335" stop="42374"/>
                    <exon start="46393" stop="46463"/>
                    <exon start="47827" stop="47842"/>
                    <exon start="52590" stop="54402"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTITVYTPAHVTTSVLNSRLLRSPPRRTLSTARYHRNFCLTCVLIPETRRESRRLVNIALGVLLQWLALPNDAVGASPFDKYVKRKQLDPLEAYVPAVLLAGVQIKELGVTFGRYWKQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61522" stop="61589"/>
                    <exon start="62058" stop="62168"/>
                    <exon start="62370" stop="62505"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAQYAADGGNGKLAFSDVDECLSALEGLDSLLLRASRKDPGASIDSMKAQIATALNALDSLLKTVPTDVLEKGKSVADSYFFAGEEEVAPERLDPELKQLESIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="41881" e_stop="42166"/>
            <exon e_start="42335" e_stop="42374"/>
            <exon e_start="46393" e_stop="46463"/>
            <exon e_start="60647" e_stop="60741"/>
            <exon e_start="61522" e_stop="61589"/>
            <exon e_start="62058" e_stop="62168"/>
            <exon e_start="62370" e_stop="62746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.503" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.855" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.673" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41881" e_stop="42166" e_length="286"/>
          </exon>
          <intron i_serial="1" don_prob="0.503" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42167" i_stop="42334" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42335" e_stop="42374" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46393" e_stop="46463" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.855">
            <gDNA_intron_boundary i_start="46464" i_stop="60646" i_length="14183"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60647" e_stop="60741" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="60742" i_stop="61521" i_length="780"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61522" e_stop="61589" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.915" acc_prob="0.996">
            <gDNA_intron_boundary i_start="61590" i_stop="62057" i_length="468"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62058" e_stop="62168" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.673">
            <gDNA_intron_boundary i_start="62169" i_stop="62369" i_length="201"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="62370" e_stop="62746" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41881" stop="42166"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="60647" stop="60741"/>
              <exon start="61522" stop="61589"/>
              <exon start="62058" stop="62168"/>
              <exon start="62370" stop="62430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61538" stop="61589"/>
              <exon start="62058" stop="62168"/>
              <exon start="62370" stop="62746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62407" stop="62746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62495" stop="62746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338172" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACGGTGATTCCCTTCATTCTAGCAATGCTAACCTGCGCCACTGTTTAATGCAGTGCGCCTTACTAATTACATTTGTAATCATCTGCTCATGTCTAAAGCGACTTTTGGCTGCCATAGGTTATCATACAA : ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG : GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG : AGAAATCCTTAGAGATTGATCAACCTAAATATGGAGATTGCCGGAATATATTGCGTTCTGGTCCTGCATCATCTCTTCGTGTCAATATTCGAGCA : GTAGCACAATACGCAGCTGATGGTGGCAATGGTAAATTAGCTTTCAGTGATGTTGATGAGTGTCTGAG : TGCATTGGAAGGACTTGACTCGTTGCTTTTGCGTGCATCAAGAAAGGATCCAGGGGCCTCAATTGACTCAATGAAGGCACAAATTGCTACTGCCTTAAATGCATTGGACAG : TCTTCTTAAAACTGTCCCAACTGATGTGCTTGAAAAGGGAAAGTCTGTAGCTGATTCATATTTTTTTGCTGGTGAGGAAGAAGTAGCACCTGAGAGACTGGACCCTGAGCTGAAGCAACTGGAATCTATACTGTAAAAAATTACAAAAGCCTCTTTCTTGATCAGGTCAATGTTTTTGCATTGCTCATTAGTTGATGGGCAGAGAGAGTGTTACTCTTTACTCTCTTCATTGATGCAGGTCATTCAAAGTATTTAAGTAATTAGTGTTGTTTTATCTCTCTACTGAATCGTTTCATATATGCATATTTACTAATGTAAAAATCACACCATATGTACATTTAAGGCTATATATATCGAGTTATAAACATACTTTTAAA</gDNA_template>
            <first_frame> R  L  L  R  S  P  P  R  R  T  L  S  T  A  R  Y  H  R  N  F  C  L  T  C  V  L  I  P  E  T  R  R  E  S  R  R  L  V  N  I  A  L  G  V  L  L  Q  W  L  A  L  P  N  G  D  S  L  H  S  S  N  A  N  L  R  H  C  L  M  Q  C  A  L  L  I  T  F  V  I  I  C  S  C  L  K  R  L  L  A  A  I  G  Y  H  T   : N  A  V  G  A  S  P  F  D  K  Y  V  K  R :   K  Q  L  D  P  L  E  A  Y  V  P  A  V  L  L  A  G  V  Q  I  K  E  L   : E  K  S  L  E  I  D  Q  P  K  Y  G  D  C  R  N  I  L  R  S  G  P  A  S  S  L  R  V  N  I  R  A  :  V  A  Q  Y  A  A  D  G  G  N  G  K  L  A  F  S  D  V  D  E  C  L  S :   A  L  E  G  L  D  S  L  L  L  R  A  S  R  K  D  P  G  A  S  I  D  S  M  K  A  Q  I  A  T  A  L  N  A  L  D  S :   L  L  K  T  V  P  T  D  V  L  E  K  G  K  S  V  A  D  S  Y  F  F  A  G  E  E  E  V  A  P  E  R  L  D  P  E  L  K  Q  L  E  S  I  L  *  K  I  T  K  A  S  F  L  I  R  S  M  F  L  H  C  S  L  V  D  G  Q  R  E  C  Y  S  L  L  S  S  L  M  Q  V  I  Q  S  I  *  V  I  S  V  V  L  S  L  Y  *  I  V  S  Y  M  H  I  Y  *  C  K  N  H  T  I  C  T  F  K  A  I  Y  I  E  L  *  T  Y  F  *  </first_frame>
            <second_frame>  G  S  S  A  L  R  H  D  G  H  C  R  R  R  D  I  T  A  I  F  A  *  L  A  C  *  Y  R  R  Q  G  G  K  A  D  D  W  S  T  *  P  L  G  S  C  F  N  G  *  L  Y  L  T  V  I  P  F  I  L  A  M  L  T  C  A  T  V  *  C  S  A  P  Y  *  L  H  L  *  S  S  A  H  V  *  S  D  F  W  L  P  *  V  I  I  Q  :  M  Q  *  E  L  A  L  L  T  S  M  *  K   : G  N  S  L  I  H  W  R  L  M  Y  Q  L  C  C  *  L  G  C  R  L  R  N  *  :  R  N  P  *  R  L  I  N  L  N  M  E  I  A  G  I  Y  C  V  L  V  L  H  H  L  F  V  S  I  F  E  Q :   *  H  N  T  Q  L  M  V  A  M  V  N  *  L  S  V  M  L  M  S  V  *   : V  H  W  K  D  L  T  R  C  F  C  V  H  Q  E  R  I  Q  G  P  Q  L  T  Q  *  R  H  K  L  L  L  P  *  M  H  W  T   : V  F  L  K  L  S  Q  L  M  C  L  K  R  E  S  L  *  L  I  H  I  F  L  L  V  R  K  K  *  H  L  R  D  W  T  L  S  *  S  N  W  N  L  Y  C  K  K  L  Q  K  P  L  S  *  S  G  Q  C  F  C  I  A  H  *  L  M  G  R  E  S  V  T  L  Y  S  L  H  *  C  R  S  F  K  V  F  K  *  L  V  L  F  Y  L  S  T  E  S  F  H  I  C  I  F  T  N  V  K  I  T  P  Y  V  H  L  R  L  Y  I  S  S  Y  K  H  T  F  K </second_frame>
            <third_frame>   A  P  P  L  S  A  T  T  D  I  V  D  G  E  I  S  P  Q  F  L  L  N  L  R  V  N  T  G  D  K  A  G  K  Q  T  I  G  Q  H  S  P  W  G  L  A  S  M  A  S  S  T  *  R  *  F  P  S  F  *  Q  C  *  P  A  P  L  F  N  A  V  R  L  T  N  Y  I  C  N  H  L  L  M  S  K  A  T  F  G  C  H  R  L  S  Y  K :   C  S  R  S  *  P  F  *  Q  V  C  E  K  :  E  T  A  *  S  T  G  G  L  C  T  S  C  A  A  S  W  G  A  D  *  G  I  R :   E  I  L  R  D  *  S  T  *  I  W  R  L  P  E  Y  I  A  F  W  S  C  I  I  S  S  C  Q  Y  S  S   : S  S  T  I  R  S  *  W  W  Q  W  *  I  S  F  Q  *  C  *  *  V  S  E  :  C  I  G  R  T  *  L  V  A  F  A  C  I  K  K  G  S  R  G  L  N  *  L  N  E  G  T  N  C  Y  C  L  K  C  I  G  Q  :  S  S  *  N  C  P  N  *  C  A  *  K  G  K  V  C  S  *  F  I  F  F  C  W  *  G  R  S  S  T  *  E  T  G  P  *  A  E  A  T  G  I  Y  T  V  K  N  Y  K  S  L  F  L  D  Q  V  N  V  F  A  L  L  I  S  *  W  A  E  R  V  L  L  F  T  L  F  I  D  A  G  H  S  K  Y  L  S  N  *  C  C  F  I  S  L  L  N  R  F  I  Y  A  Y  L  L  M  *  K  S  H  H  M  Y  I  *  G  Y  I  Y  R  V  I  N  I  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41881" stop="42166"/>
                    <exon start="42335" stop="42374"/>
                    <exon start="46393" stop="46463"/>
                    <exon start="60647" stop="60741"/>
                    <exon start="61522" stop="61589"/>
                    <exon start="62058" stop="62168"/>
                    <exon start="62370" stop="62505"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLLRSPPRRTLSTARYHRNFCLTCVLIPETRRESRRLVNIALGVLLQWLALPNGDSLHSSNANLRHCLMQCALLITFVIICSCLKRLLAAIGYHTNAVGASPFDKYVKRKQLDPLEAYVPAVLLAGVQIKELEKSLEIDQPKYGDCRNILRSGPASSLRVNIRAVAQYAADGGNGKLAFSDVDECLSALEGLDSLLLRASRKDPGASIDSMKAQIATALNALDSLLKTVPTDVLEKGKSVADSYFFAGEEEVAPERLDPELKQLESIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="41818" e_stop="42040"/>
            <exon e_start="42335" e_stop="42374"/>
            <exon e_start="46393" e_stop="46463"/>
            <exon e_start="46748" e_stop="46799"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.885" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.147" e_score="1.000"/>
          <exon-only e_score="0.519"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41818" e_stop="42040" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.885" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42041" i_stop="42334" i_length="294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42335" e_stop="42374" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42375" i_stop="46392" i_length="4018"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46393" e_stop="46463" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.147">
            <gDNA_intron_boundary i_start="46464" i_stop="46747" i_length="284"/>
          </intron>
          <exon e_serial="4" e_score="0.519">
            <gDNA_exon_boundary e_start="46748" e_stop="46799" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41818" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41829" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="46748" stop="46799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41836" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41890" stop="42040"/>
              <exon start="42335" stop="42374"/>
              <exon start="46393" stop="46463"/>
              <exon start="46748" stop="46771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCGATTAGATGACAATTACCGTGTACACCCCTGCGCATGTTACCACCAGCGTCTTAAATTCCCGGCTCCTCCGCTCTCCGCCACGACGGACATTGTCGACGGCGAGATATCACCGCAATTTTTGCTTAACTTGCGTGTTAATACCGGAGACAAGGCGGGAAAGCAGACGATTGGTCAACATAGCCCTTGGGGTCTTGCTTCAATGGCTAGCTCTACCTAACG : ATGCAGTAGGAGCTAGCCCTTTTGACAAGTATGTGAAAAG : GAAACAGCTTGATCCACTGGAGGCTTATGTACCAGCTGTGCTGCTAGCTGGGGTGCAGATTAAGGAATTAG : AAATTTACTAAGTCTTTGAGTACTTCAAACTCAAGAGATTGCAGGTTCTCTC</gDNA_template>
            <first_frame> S  D  *  M  T  I  T  V  Y  T  P  A  H  V  T  T  S  V  L  N  S  R  L  L  R  S  P  P  R  R  T  L  S  T  A  R  Y  H  R  N  F  C  L  T  C  V  L  I  P  E  T  R  R  E  S  R  R  L  V  N  I  A  L  G  V  L  L  Q  W  L  A  L  P  N   : D  A  V  G  A  S  P  F  D  K  Y  V  K  R :   K  Q  L  D  P  L  E  A  Y  V  P  A  V  L  L  A  G  V  Q  I  K  E  L   : E  I  Y  *  V  F  E  Y  F  K  L  K  R  L  Q  V  L   </first_frame>
            <second_frame>  P  I  R  *  Q  L  P  C  T  P  L  R  M  L  P  P  A  S  *  I  P  G  S  S  A  L  R  H  D  G  H  C  R  R  R  D  I  T  A  I  F  A  *  L  A  C  *  Y  R  R  Q  G  G  K  A  D  D  W  S  T  *  P  L  G  S  C  F  N  G  *  L  Y  L  T  :  M  Q  *  E  L  A  L  L  T  S  M  *  K   : G  N  S  L  I  H  W  R  L  M  Y  Q  L  C  C  *  L  G  C  R  L  R  N  *  :  K  F  T  K  S  L  S  T  S  N  S  R  D  C  R  F  S  </second_frame>
            <third_frame>   R  L  D  D  N  Y  R  V  H  P  C  A  C  Y  H  Q  R  L  K  F  P  A  P  P  L  S  A  T  T  D  I  V  D  G  E  I  S  P  Q  F  L  L  N  L  R  V  N  T  G  D  K  A  G  K  Q  T  I  G  Q  H  S  P  W  G  L  A  S  M  A  S  S  T  *  R :   C  S  R  S  *  P  F  *  Q  V  C  E  K  :  E  T  A  *  S  T  G  G  L  C  T  S  C  A  A  S  W  G  A  D  *  G  I  R :   N  L  L  S  L  *  V  L  Q  T  Q  E  I  A  G  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41827" stop="42040"/>
                    <exon start="42335" stop="42374"/>
                    <exon start="46393" stop="46463"/>
                    <exon start="46748" stop="46758"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTITVYTPAHVTTSVLNSRLLRSPPRRTLSTARYHRNFCLTCVLIPETRRESRRLVNIALGVLLQWLALPNDAVGASPFDKYVKRKQLDPLEAYVPAVLLAGVQIKELEIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="71206" PGL_stop="63841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71206" e_stop="71120"/>
            <exon e_start="71039" e_stop="70769"/>
            <exon e_start="70682" e_stop="70584"/>
            <exon e_start="70486" e_stop="70398"/>
            <exon e_start="70288" e_stop="70189"/>
            <exon e_start="70090" e_stop="69920"/>
            <exon e_start="68343" e_stop="68191"/>
            <exon e_start="68028" e_stop="67868"/>
            <exon e_start="67784" e_stop="67586"/>
            <exon e_start="66002" e_stop="65542"/>
            <exon e_start="65444" e_stop="65381"/>
            <exon e_start="64389" e_stop="64303"/>
            <exon e_start="64200" e_stop="63948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.782" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.644" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.197" acc_prob="0.712" e_score="0.989"/>
          <exon-intron don_prob="0.935" acc_prob="0.981" e_score="0.960"/>
          <exon-intron don_prob="0.947" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.988" e_score="0.990"/>
          <exon-intron don_prob="0.948" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.778" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71206" e_stop="71120" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.782" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71119" i_stop="71040" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71039" e_stop="70769" e_length="271"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.644">
            <gDNA_intron_boundary i_start="70768" i_stop="70683" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70682" e_stop="70584" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.979">
            <gDNA_intron_boundary i_start="70583" i_stop="70487" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="70486" e_stop="70398" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.197" acc_prob="0.712">
            <gDNA_intron_boundary i_start="70397" i_stop="70289" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="0.960">
            <gDNA_exon_boundary e_start="70288" e_stop="70189" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.935" acc_prob="0.981">
            <gDNA_intron_boundary i_start="70188" i_stop="70091" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70090" e_stop="69920" e_length="171"/>
          </exon>
          <intron i_serial="6" don_prob="0.947" acc_prob="0.966">
            <gDNA_intron_boundary i_start="69919" i_stop="68344" i_length="1576"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68343" e_stop="68191" e_length="153"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.991">
            <gDNA_intron_boundary i_start="68190" i_stop="68029" i_length="162"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="68028" e_stop="67868" e_length="161"/>
          </exon>
          <intron i_serial="8" don_prob="0.877" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67867" i_stop="67785" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="0.990">
            <gDNA_exon_boundary e_start="67784" e_stop="67586" e_length="199"/>
          </exon>
          <intron i_serial="9" don_prob="0.928" acc_prob="0.988">
            <gDNA_intron_boundary i_start="67585" i_stop="66003" i_length="1583"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="66002" e_stop="65542" e_length="461"/>
          </exon>
          <intron i_serial="10" don_prob="0.948" acc_prob="0.954">
            <gDNA_intron_boundary i_start="65541" i_stop="65445" i_length="97"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="65444" e_stop="65381" e_length="64"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="65380" i_stop="64390" i_length="991"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="64389" e_stop="64303" e_length="87"/>
          </exon>
          <intron i_serial="12" don_prob="0.778" acc_prob="0.950">
            <gDNA_intron_boundary i_start="64302" i_stop="64201" i_length="102"/>
          </intron>
          <exon e_serial="13" e_score="0.992">
            <gDNA_exon_boundary e_start="64200" e_stop="63948" e_length="253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71206" stop="71120"/>
              <exon start="71039" stop="70769"/>
              <exon start="70682" stop="70614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71164" stop="71120"/>
              <exon start="71039" stop="70859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71163" stop="71120"/>
              <exon start="71039" stop="70769"/>
              <exon start="70682" stop="70584"/>
              <exon start="70486" stop="70451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71160" stop="71120"/>
              <exon start="71039" stop="70769"/>
              <exon start="70682" stop="70584"/>
              <exon start="70486" stop="70398"/>
              <exon start="70288" stop="70189"/>
              <exon start="70090" stop="69946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70631" stop="70584"/>
              <exon start="70486" stop="70398"/>
              <exon start="70288" stop="70189"/>
              <exon start="70090" stop="69920"/>
              <exon start="68343" stop="68191"/>
              <exon start="68028" stop="67993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70234" stop="70189"/>
              <exon start="70090" stop="69920"/>
              <exon start="68343" stop="68191"/>
              <exon start="68028" stop="67868"/>
              <exon start="67784" stop="67590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70234" stop="70189"/>
              <exon start="70090" stop="69920"/>
              <exon start="68343" stop="68191"/>
              <exon start="68028" stop="67959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68247" stop="68191"/>
              <exon start="68028" stop="67868"/>
              <exon start="67784" stop="67586"/>
              <exon start="66002" stop="65768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68247" stop="68191"/>
              <exon start="68028" stop="67868"/>
              <exon start="67784" stop="67586"/>
              <exon start="66002" stop="65961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67937" stop="67868"/>
              <exon start="67784" stop="67586"/>
              <exon start="66002" stop="65732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67696" stop="67586"/>
              <exon start="66002" stop="65576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65996" stop="65542"/>
              <exon start="65444" stop="65381"/>
              <exon start="64389" stop="64332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65870" stop="65542"/>
              <exon start="65444" stop="65381"/>
              <exon start="64389" stop="64303"/>
              <exon start="64200" stop="63948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65838" stop="65542"/>
              <exon start="65444" stop="65381"/>
              <exon start="64389" stop="64303"/>
              <exon start="64200" stop="64082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65838" stop="65542"/>
              <exon start="65444" stop="65381"/>
              <exon start="64389" stop="64303"/>
              <exon start="64200" stop="64117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65838" stop="65542"/>
              <exon start="65444" stop="65381"/>
              <exon start="64389" stop="64309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228399" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATGGCATTCAAGAGATACCAATTTCTCATGATAGCTTGCGTCTTCTGCAGCTAGTGAAGTGTCGTGTGCTTCGAGTTTCTATCAG : ATGTCCGCAACTTGAAACATTGTCACTGAAGCGCAGTAGCATGCCACATGCAGTGCTTAATTGCCCTCTTTTACATGACCTTGATATAGCTTCCTGTCACAAACTTTCCGACGCTGCTATTCGTTCGGCTGCCACCGCATGCCCTCTTTTAGAATCTTTGGATATGTCAAATTGTTCATGTGTCAGTGATGAAACACTGCGTGATATAGCTCAAACTTGTGGACATCTTCGAGTTTTGGATGCTTCATACTGCCCAAACATTTCTCTTGAG : TCTGTGAGGCTGGTTATGCTGACTGTTCTCAAGCTTCATAGTTGTGAGGGCATAACATCAGCTTCCATGGCTGCCATAGCCCATAGCTATATGTTAGAG : GTTCTGGAGCTTGATAATTGCAGTTTATTGACATCAGTGTCCTTGGATCTTCCTCGCCTTCAGAGCATTAGACTAGTACATTGTCGCAA : GTTTATTGACCTTAACTTGCATTGTGGAATGTTATCATCAATTACTGTTTCTAATTGCCCATTGCTTCAAAGAATCAATATAACTTCAAGTGCTCTCAAA : AAATTAGTTTTGCAGAAGCAGGAAAGCTTGACAACAATTGCATTACAGTGTCCGAATTTGCTAGAAGTAGACCTTACTGAGTGTGAATCGCTCACCAATTCTGTTTGTGAAGTTTTCAGTGATGGTGGTGGCTGTCCTGTGCTTAAATCCTTAGTTCTGGATAACTGTGAG : AGCTTGACACTTGTGGCTTTCTGCAGCACTTCTTTGGTTTCTCTTTCACTTGGTGGTTGCCGTGCTTTAATTTCTCTTGCGCTTAGGTGCCCATATCTTGAACAAGTATCTTTAGATGGTTGTGATCATCTTGAAGTAGCATCATTTTGCCCC : GTTGGTCTTAGGTCACTTAATCTTGGTATATGCCCCAAAATGAATATGCTTCATATTGAAGCTCCACAAATGGCTTCACTTGAGCTGAAGGGCTGTGGTGTGCTCTCTGAAGCATCTATTAATTGCCCCCTGTTAACCTCTTTTGATGCTTCATTCTGCAG : CCAACTCAAGGATGATTGTTTATCTGCCACGACTTCGTCGTGCCCCCTCATCGAGTCATTAGTATTAATGTCATGTCCATCTGTTGGCTGTGATGGACTCCTCTCTTTGCAGTCCCTCCCAAACTTGACCTACCTTGATCTATCCTATACGTTTTTGGTTACCTTGCAACCTGTTTATGAATCATGCTTGCAGTTAAAG : GTCCTAAAGTTGCAAGCATGCAAGTATCTCACTGATACATCTTTGGAACCCCTCTATAAAGAAAATGCTCTTCCAGCCCTTTGTGAGTTGGATCTGTCGTATGGGACCTTATGCCAATCAGCCATTGAGGAATTGCTTGCTTGCTGCACACATTTGAGTCATGTCAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAGAACAGCAGTTGTCAAATGAACAACCAAAGCGTTTGCTAGAGAACCTTAACTGTGTAGGCTGCCCAAATATAAAAAAGGTGCTTATTCCAATGGCACAAGGTTTCCTTTTGTCATCATTAAACCTTTCCCTGTCTGGGAATTTGAAGGAGGTTGATATAGCTTGTTACAACTTGTGCGTTCTCAATTTGAG : CAATTGCTGTTCATTGGAATCATTGCAACTGGAATGTCCAAGATTAAGTAGCCTCTTTCTTCAG : TCCTGCAACGTTGATGAGGAATCAGTTGAAGCTGCTGTGTCACGATGTATGATGCTTGAGACGCTTGACGTTCGCTTTTGTCCCAAG : ATTTGTCCATTGAACATGACGAGGTTGCGGGTTGCATGTCCCAGTTTGAAACGCATCTTCAGCAGCCTAGTCCCATCGTGAGGCAAAATGAAATATTTGATAGGTTTGTGTAGGCTGGCTAGGGACGGACATATTTGACTAGAGAGGTTCATATTTTATGTATAGTTTAGCTAGTTATGTTGCTGTGATTGGTGAAAACATACAGCGAGCTTCATACATGTAACACCTTAAACTTAATATTTTAACTATTTAT</gDNA_template>
            <first_frame> K  W  H  S  R  D  T  N  F  S  *  *  L  A  S  S  A  A  S  E  V  S  C  A  S  S  F  Y  Q  :  M  S  A  T  *  N  I  V  T  E  A  Q  *  H  A  T  C  S  A  *  L  P  S  F  T  *  P  *  Y  S  F  L  S  Q  T  F  R  R  C  Y  S  F  G  C  H  R  M  P  S  F  R  I  F  G  Y  V  K  L  F  M  C  Q  *  *  N  T  A  *  Y  S  S  N  L  W  T  S  S  S  F  G  C  F  I  L  P  K  H  F  S  *   : V  C  E  A  G  Y  A  D  C  S  Q  A  S  *  L  *  G  H  N  I  S  F  H  G  C  H  S  P  *  L  Y  V  R   : G  S  G  A  *  *  L  Q  F  I  D  I  S  V  L  G  S  S  S  P  S  E  H  *  T  S  T  L  S  Q  :  V  Y  *  P  *  L  A  L  W  N  V  I  I  N  Y  C  F  *  L  P  I  A  S  K  N  Q  Y  N  F  K  C  S  Q   : K  I  S  F  A  E  A  G  K  L  D  N  N  C  I  T  V  S  E  F  A  R  S  R  P  Y  *  V  *  I  A  H  Q  F  C  L  *  S  F  Q  *  W  W  W  L  S  C  A  *  I  L  S  S  G  *  L  *   : E  L  D  T  C  G  F  L  Q  H  F  F  G  F  S  F  T  W  W  L  P  C  F  N  F  S  C  A  *  V  P  I  S  *  T  S  I  F  R  W  L  *  S  S  *  S  S  I  I  L  P   : R  W  S  *  V  T  *  S  W  Y  M  P  Q  N  E  Y  A  S  Y  *  S  S  T  N  G  F  T  *  A  E  G  L  W  C  A  L  *  S  I  Y  *  L  P  P  V  N  L  F  *  C  F  I  L  Q  :  P  T  Q  G  *  L  F  I  C  H  D  F  V  V  P  P  H  R  V  I  S  I  N  V  M  S  I  C  W  L  *  W  T  P  L  F  A  V  P  P  K  L  D  L  P  *  S  I  L  Y  V  F  G  Y  L  A  T  C  L  *  I  M  L  A  V  K   : G  P  K  V  A  S  M  Q  V  S  H  *  Y  I  F  G  T  P  L  *  R  K  C  S  S  S  P  L  *  V  G  S  V  V  W  D  L  M  P  I  S  H  *  G  I  A  C  L  L  H  T  F  E  S  C  Q  L  E  W  M  Y  *  Y  A  *  F  K  L  G  I  F  W  R  S  T  V  T  N  T  Q  C  *  Y  T  S  C  I  F  P  G  R  T  A  V  V  K  *  T  T  K  A  F  A  R  E  P  *  L  C  R  L  P  K  Y  K  K  G  A  Y  S  N  G  T  R  F  P  F  V  I  I  K  P  F  P  V  W  E  F  E  G  G  *  Y  S  L  L  Q  L  V  R  S  Q  F  E  :  Q  L  L  F  I  G  I  I  A  T  G  M  S  K  I  K  *  P  L  S  S   : V  L  Q  R  *  *  G  I  S  *  S  C  C  V  T  M  Y  D  A  *  D  A  *  R  S  L  L  S  Q   : D  L  S  I  E  H  D  E  V  A  G  C  M  S  Q  F  E  T  H  L  Q  Q  P  S  P  I  V  R  Q  N  E  I  F  D  R  F  V  *  A  G  *  G  R  T  Y  L  T  R  E  V  H  I  L  C  I  V  *  L  V  M  L  L  *  L  V  K  T  Y  S  E  L  H  T  C  N  T  L  N  L  I  F  *  L  F   </first_frame>
            <second_frame>  N  G  I  Q  E  I  P  I  S  H  D  S  L  R  L  L  Q  L  V  K  C  R  V  L  R  V  S  I  R :   C  P  Q  L  E  T  L  S  L  K  R  S  S  M  P  H  A  V  L  N  C  P  L  L  H  D  L  D  I  A  S  C  H  K  L  S  D  A  A  I  R  S  A  A  T  A  C  P  L  L  E  S  L  D  M  S  N  C  S  C  V  S  D  E  T  L  R  D  I  A  Q  T  C  G  H  L  R  V  L  D  A  S  Y  C  P  N  I  S  L  E  :  S  V  R  L  V  M  L  T  V  L  K  L  H  S  C  E  G  I  T  S  A  S  M  A  A  I  A  H  S  Y  M  L  E  :  V  L  E  L  D  N  C  S  L  L  T  S  V  S  L  D  L  P  R  L  Q  S  I  R  L  V  H  C  R  K :   F  I  D  L  N  L  H  C  G  M  L  S  S  I  T  V  S  N  C  P  L  L  Q  R  I  N  I  T  S  S  A  L  K  :  K  L  V  L  Q  K  Q  E  S  L  T  T  I  A  L  Q  C  P  N  L  L  E  V  D  L  T  E  C  E  S  L  T  N  S  V  C  E  V  F  S  D  G  G  G  C  P  V  L  K  S  L  V  L  D  N  C  E  :  S  L  T  L  V  A  F  C  S  T  S  L  V  S  L  S  L  G  G  C  R  A  L  I  S  L  A  L  R  C  P  Y  L  E  Q  V  S  L  D  G  C  D  H  L  E  V  A  S  F  C  P  :  V  G  L  R  S  L  N  L  G  I  C  P  K  M  N  M  L  H  I  E  A  P  Q  M  A  S  L  E  L  K  G  C  G  V  L  S  E  A  S  I  N  C  P  L  L  T  S  F  D  A  S  F  C  S :   Q  L  K  D  D  C  L  S  A  T  T  S  S  C  P  L  I  E  S  L  V  L  M  S  C  P  S  V  G  C  D  G  L  L  S  L  Q  S  L  P  N  L  T  Y  L  D  L  S  Y  T  F  L  V  T  L  Q  P  V  Y  E  S  C  L  Q  L  K  :  V  L  K  L  Q  A  C  K  Y  L  T  D  T  S  L  E  P  L  Y  K  E  N  A  L  P  A  L  C  E  L  D  L  S  Y  G  T  L  C  Q  S  A  I  E  E  L  L  A  C  C  T  H  L  S  H  V  S  L  N  G  C  I  N  M  H  D  L  N  W  G  F  S  G  D  Q  L  S  Q  I  P  S  V  S  I  P  H  V  S  S  L  G  E  Q  Q  L  S  N  E  Q  P  K  R  L  L  E  N  L  N  C  V  G  C  P  N  I  K  K  V  L  I  P  M  A  Q  G  F  L  L  S  S  L  N  L  S  L  S  G  N  L  K  E  V  D  I  A  C  Y  N  L  C  V  L  N  L  S :   N  C  C  S  L  E  S  L  Q  L  E  C  P  R  L  S  S  L  F  L  Q  :  S  C  N  V  D  E  E  S  V  E  A  A  V  S  R  C  M  M  L  E  T  L  D  V  R  F  C  P  K  :  I  C  P  L  N  M  T  R  L  R  V  A  C  P  S  L  K  R  I  F  S  S  L  V  P  S  *  G  K  M  K  Y  L  I  G  L  C  R  L  A  R  D  G  H  I  *  L  E  R  F  I  F  Y  V  *  F  S  *  L  C  C  C  D  W  *  K  H  T  A  S  F  I  H  V  T  P  *  T  *  Y  F  N  Y  L  </second_frame>
            <third_frame>   M  A  F  K  R  Y  Q  F  L  M  I  A  C  V  F  C  S  *  *  S  V  V  C  F  E  F  L  S   : D  V  R  N  L  K  H  C  H  *  S  A  V  A  C  H  M  Q  C  L  I  A  L  F  Y  M  T  L  I  *  L  P  V  T  N  F  P  T  L  L  F  V  R  L  P  P  H  A  L  F  *  N  L  W  I  C  Q  I  V  H  V  S  V  M  K  H  C  V  I  *  L  K  L  V  D  I  F  E  F  W  M  L  H  T  A  Q  T  F  L  L  S :   L  *  G  W  L  C  *  L  F  S  S  F  I  V  V  R  A  *  H  Q  L  P  W  L  P  *  P  I  A  I  C  *  R :   F  W  S  L  I  I  A  V  Y  *  H  Q  C  P  W  I  F  L  A  F  R  A  L  D  *  Y  I  V  A   : S  L  L  T  L  T  C  I  V  E  C  Y  H  Q  L  L  F  L  I  A  H  C  F  K  E  S  I  *  L  Q  V  L  S  K :   N  *  F  C  R  S  R  K  A  *  Q  Q  L  H  Y  S  V  R  I  C  *  K  *  T  L  L  S  V  N  R  S  P  I  L  F  V  K  F  S  V  M  V  V  A  V  L  C  L  N  P  *  F  W  I  T  V  R :   A  *  H  L  W  L  S  A  A  L  L  W  F  L  F  H  L  V  V  A  V  L  *  F  L  L  R  L  G  A  H  I  L  N  K  Y  L  *  M  V  V  I  I  L  K  *  H  H  F  A  P :   L  V  L  G  H  L  I  L  V  Y  A  P  K  *  I  C  F  I  L  K  L  H  K  W  L  H  L  S  *  R  A  V  V  C  S  L  K  H  L  L  I  A  P  C  *  P  L  L  M  L  H  S  A   : A  N  S  R  M  I  V  Y  L  P  R  L  R  R  A  P  S  S  S  H  *  Y  *  C  H  V  H  L  L  A  V  M  D  S  S  L  C  S  P  S  Q  T  *  P  T  L  I  Y  P  I  R  F  W  L  P  C  N  L  F  M  N  H  A  C  S  *  R :   S  *  S  C  K  H  A  S  I  S  L  I  H  L  W  N  P  S  I  K  K  M  L  F  Q  P  F  V  S  W  I  C  R  M  G  P  Y  A  N  Q  P  L  R  N  C  L  L  A  A  H  I  *  V  M  S  A  *  M  D  V  L  I  C  M  I  *  I  G  D  F  L  E  I  N  C  H  K  Y  P  V  L  V  Y  L  M  Y  L  P  W  E  N  S  S  C  Q  M  N  N  Q  S  V  C  *  R  T  L  T  V  *  A  A  Q  I  *  K  R  C  L  F  Q  W  H  K  V  S  F  C  H  H  *  T  F  P  C  L  G  I  *  R  R  L  I  *  L  V  T  T  C  A  F  S  I  *   : A  I  A  V  H  W  N  H  C  N  W  N  V  Q  D  *  V  A  S  F  F  S :   P  A  T  L  M  R  N  Q  L  K  L  L  C  H  D  V  *  C  L  R  R  L  T  F  A  F  V  P  R :   F  V  H  *  T  *  R  G  C  G  L  H  V  P  V  *  N  A  S  S  A  A  *  S  H  R  E  A  K  *  N  I  *  *  V  C  V  G  W  L  G  T  D  I  F  D  *  R  G  S  Y  F  M  Y  S  L  A  S  Y  V  A  V  I  G  E  N  I  Q  R  A  S  Y  M  *  H  L  K  L  N  I  L  T  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71205" stop="71120"/>
                    <exon start="71039" stop="70769"/>
                    <exon start="70682" stop="70584"/>
                    <exon start="70486" stop="70398"/>
                    <exon start="70288" stop="70189"/>
                    <exon start="70090" stop="69920"/>
                    <exon start="68343" stop="68191"/>
                    <exon start="68028" stop="67868"/>
                    <exon start="67784" stop="67586"/>
                    <exon start="66002" stop="65542"/>
                    <exon start="65444" stop="65381"/>
                    <exon start="64389" stop="64303"/>
                    <exon start="64200" stop="64120"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2019</number_coding_nucleotides>
                  <number_encoded_amino_acids>673</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGIQEIPISHDSLRLLQLVKCRVLRVSIRCPQLETLSLKRSSMPHAVLNCPLLHDLDIASCHKLSDAAIRSAATACPLLESLDMSNCSCVSDETLRDIAQTCGHLRVLDASYCPNISLESVRLVMLTVLKLHSCEGITSASMAAIAHSYMLEVLELDNCSLLTSVSLDLPRLQSIRLVHCRKFIDLNLHCGMLSSITVSNCPLLQRINITSSALKKLVLQKQESLTTIALQCPNLLEVDLTECESLTNSVCEVFSDGGGCPVLKSLVLDNCESLTLVAFCSTSLVSLSLGGCRALISLALRCPYLEQVSLDGCDHLEVASFCPVGLRSLNLGICPKMNMLHIEAPQMASLELKGCGVLSEASINCPLLTSFDASFCSQLKDDCLSATTSSCPLIESLVLMSCPSVGCDGLLSLQSLPNLTYLDLSYTFLVTLQPVYESCLQLKVLKLQACKYLTDTSLEPLYKENALPALCELDLSYGTLCQSAIEELLACCTHLSHVSLNGCINMHDLNWGFSGDQLSQIPSVSIPHVSSLGEQQLSNEQPKRLLENLNCVGCPNIKKVLIPMAQGFLLSSLNLSLSGNLKEVDIACYNLCVLNLSNCCSLESLQLECPRLSSLFLQSCNVDEESVEAAVSRCMMLETLDVRFCPKICPLNMTRLRVACPSLKRIFSSLVPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71206" e_stop="71120"/>
            <exon e_start="71039" e_stop="70769"/>
            <exon e_start="70682" e_stop="70584"/>
            <exon e_start="70486" e_stop="70398"/>
            <exon e_start="70288" e_stop="70189"/>
            <exon e_start="70090" e_stop="69920"/>
            <exon e_start="68343" e_stop="68191"/>
            <exon e_start="68028" e_stop="67868"/>
            <exon e_start="67784" e_stop="67586"/>
            <exon e_start="66002" e_stop="65542"/>
            <exon e_start="65444" e_stop="65381"/>
            <exon e_start="64389" e_stop="64303"/>
            <exon e_start="64200" e_stop="63982"/>
            <exon e_start="63920" e_stop="63841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.782" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.644" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.197" acc_prob="0.712" e_score="0.989"/>
          <exon-intron don_prob="0.935" acc_prob="0.981" e_score="0.960"/>
          <exon-intron don_prob="0.947" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.988" e_score="0.990"/>
          <exon-intron don_prob="0.948" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.778" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.000" e_score="0.950"/>
          <exon-only e_score="0.863"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71206" e_stop="71120" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.782" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71119" i_stop="71040" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71039" e_stop="70769" e_length="271"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.644">
            <gDNA_intron_boundary i_start="70768" i_stop="70683" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70682" e_stop="70584" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.979">
            <gDNA_intron_boundary i_start="70583" i_stop="70487" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="70486" e_stop="70398" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.197" acc_prob="0.712">
            <gDNA_intron_boundary i_start="70397" i_stop="70289" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="0.960">
            <gDNA_exon_boundary e_start="70288" e_stop="70189" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.935" acc_prob="0.981">
            <gDNA_intron_boundary i_start="70188" i_stop="70091" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70090" e_stop="69920" e_length="171"/>
          </exon>
          <intron i_serial="6" don_prob="0.947" acc_prob="0.966">
            <gDNA_intron_boundary i_start="69919" i_stop="68344" i_length="1576"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68343" e_stop="68191" e_length="153"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.991">
            <gDNA_intron_boundary i_start="68190" i_stop="68029" i_length="162"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="68028" e_stop="67868" e_length="161"/>
          </exon>
          <intron i_serial="8" don_prob="0.877" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67867" i_stop="67785" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="0.990">
            <gDNA_exon_boundary e_start="67784" e_stop="67586" e_length="199"/>
          </exon>
          <intron i_serial="9" don_prob="0.928" acc_prob="0.988">
            <gDNA_intron_boundary i_start="67585" i_stop="66003" i_length="1583"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="66002" e_stop="65542" e_length="461"/>
          </exon>
          <intron i_serial="10" don_prob="0.948" acc_prob="0.954">
            <gDNA_intron_boundary i_start="65541" i_stop="65445" i_length="97"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="65444" e_stop="65381" e_length="64"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="65380" i_stop="64390" i_length="991"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="64389" e_stop="64303" e_length="87"/>
          </exon>
          <intron i_serial="12" don_prob="0.778" acc_prob="0.950">
            <gDNA_intron_boundary i_start="64302" i_stop="64201" i_length="102"/>
          </intron>
          <exon e_serial="13" e_score="0.950">
            <gDNA_exon_boundary e_start="64200" e_stop="63982" e_length="219"/>
          </exon>
          <intron i_serial="13" don_prob="0.970" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63981" i_stop="63921" i_length="61"/>
          </intron>
          <exon e_serial="14" e_score="0.863">
            <gDNA_exon_boundary e_start="63920" e_stop="63841" e_length="80"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71206" stop="71120"/>
              <exon start="71039" stop="70769"/>
              <exon start="70682" stop="70614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71164" stop="71120"/>
              <exon start="71039" stop="70859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71163" stop="71120"/>
              <exon start="71039" stop="70769"/>
              <exon start="70682" stop="70584"/>
              <exon start="70486" stop="70451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71160" stop="71120"/>
              <exon start="71039" stop="70769"/>
              <exon start="70682" stop="70584"/>
              <exon start="70486" stop="70398"/>
              <exon start="70288" stop="70189"/>
              <exon start="70090" stop="69946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70631" stop="70584"/>
              <exon start="70486" stop="70398"/>
              <exon start="70288" stop="70189"/>
              <exon start="70090" stop="69920"/>
              <exon start="68343" stop="68191"/>
              <exon start="68028" stop="67993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70234" stop="70189"/>
              <exon start="70090" stop="69920"/>
              <exon start="68343" stop="68191"/>
              <exon start="68028" stop="67868"/>
              <exon start="67784" stop="67590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70234" stop="70189"/>
              <exon start="70090" stop="69920"/>
              <exon start="68343" stop="68191"/>
              <exon start="68028" stop="67959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68247" stop="68191"/>
              <exon start="68028" stop="67868"/>
              <exon start="67784" stop="67586"/>
              <exon start="66002" stop="65768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68247" stop="68191"/>
              <exon start="68028" stop="67868"/>
              <exon start="67784" stop="67586"/>
              <exon start="66002" stop="65961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67937" stop="67868"/>
              <exon start="67784" stop="67586"/>
              <exon start="66002" stop="65732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67696" stop="67586"/>
              <exon start="66002" stop="65576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65996" stop="65542"/>
              <exon start="65444" stop="65381"/>
              <exon start="64389" stop="64332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65838" stop="65542"/>
              <exon start="65444" stop="65381"/>
              <exon start="64389" stop="64303"/>
              <exon start="64200" stop="64082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65838" stop="65542"/>
              <exon start="65444" stop="65381"/>
              <exon start="64389" stop="64303"/>
              <exon start="64200" stop="64117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65838" stop="65542"/>
              <exon start="65444" stop="65381"/>
              <exon start="64389" stop="64309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65623" stop="65542"/>
              <exon start="65444" stop="65381"/>
              <exon start="64389" stop="64303"/>
              <exon start="64200" stop="63982"/>
              <exon start="63920" stop="63841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443921" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATGGCATTCAAGAGATACCAATTTCTCATGATAGCTTGCGTCTTCTGCAGCTAGTGAAGTGTCGTGTGCTTCGAGTTTCTATCAG : ATGTCCGCAACTTGAAACATTGTCACTGAAGCGCAGTAGCATGCCACATGCAGTGCTTAATTGCCCTCTTTTACATGACCTTGATATAGCTTCCTGTCACAAACTTTCCGACGCTGCTATTCGTTCGGCTGCCACCGCATGCCCTCTTTTAGAATCTTTGGATATGTCAAATTGTTCATGTGTCAGTGATGAAACACTGCGTGATATAGCTCAAACTTGTGGACATCTTCGAGTTTTGGATGCTTCATACTGCCCAAACATTTCTCTTGAG : TCTGTGAGGCTGGTTATGCTGACTGTTCTCAAGCTTCATAGTTGTGAGGGCATAACATCAGCTTCCATGGCTGCCATAGCCCATAGCTATATGTTAGAG : GTTCTGGAGCTTGATAATTGCAGTTTATTGACATCAGTGTCCTTGGATCTTCCTCGCCTTCAGAGCATTAGACTAGTACATTGTCGCAA : GTTTATTGACCTTAACTTGCATTGTGGAATGTTATCATCAATTACTGTTTCTAATTGCCCATTGCTTCAAAGAATCAATATAACTTCAAGTGCTCTCAAA : AAATTAGTTTTGCAGAAGCAGGAAAGCTTGACAACAATTGCATTACAGTGTCCGAATTTGCTAGAAGTAGACCTTACTGAGTGTGAATCGCTCACCAATTCTGTTTGTGAAGTTTTCAGTGATGGTGGTGGCTGTCCTGTGCTTAAATCCTTAGTTCTGGATAACTGTGAG : AGCTTGACACTTGTGGCTTTCTGCAGCACTTCTTTGGTTTCTCTTTCACTTGGTGGTTGCCGTGCTTTAATTTCTCTTGCGCTTAGGTGCCCATATCTTGAACAAGTATCTTTAGATGGTTGTGATCATCTTGAAGTAGCATCATTTTGCCCC : GTTGGTCTTAGGTCACTTAATCTTGGTATATGCCCCAAAATGAATATGCTTCATATTGAAGCTCCACAAATGGCTTCACTTGAGCTGAAGGGCTGTGGTGTGCTCTCTGAAGCATCTATTAATTGCCCCCTGTTAACCTCTTTTGATGCTTCATTCTGCAG : CCAACTCAAGGATGATTGTTTATCTGCCACGACTTCGTCGTGCCCCCTCATCGAGTCATTAGTATTAATGTCATGTCCATCTGTTGGCTGTGATGGACTCCTCTCTTTGCAGTCCCTCCCAAACTTGACCTACCTTGATCTATCCTATACGTTTTTGGTTACCTTGCAACCTGTTTATGAATCATGCTTGCAGTTAAAG : GTCCTAAAGTTGCAAGCATGCAAGTATCTCACTGATACATCTTTGGAACCCCTCTATAAAGAAAATGCTCTTCCAGCCCTTTGTGAGTTGGATCTGTCGTATGGGACCTTATGCCAATCAGCCATTGAGGAATTGCTTGCTTGCTGCACACATTTGAGTCATGTCAGCTTGAATGGATGTATTAATATGCATGATTTAAATTGGGGATTTTCTGGAGATCAACTGTCACAAATACCCAGTGTTAGTATACCTCATGTATCTTCCCTGGGAGAACAGCAGTTGTCAAATGAACAACCAAAGCGTTTGCTAGAGAACCTTAACTGTGTAGGCTGCCCAAATATAAAAAAGGTGCTTATTCCAATGGCACAAGGTTTCCTTTTGTCATCATTAAACCTTTCCCTGTCTGGGAATTTGAAGGAGGTTGATATAGCTTGTTACAACTTGTGCGTTCTCAATTTGAG : CAATTGCTGTTCATTGGAATCATTGCAACTGGAATGTCCAAGATTAAGTAGCCTCTTTCTTCAG : TCCTGCAACGTTGATGAGGAATCAGTTGAAGCTGCTGTGTCACGATGTATGATGCTTGAGACGCTTGACGTTCGCTTTTGTCCCAAG : ATTTGTCCATTGAACATGACGAGGTTGCGGGTTGCATGTCCCAGTTTGAAACGCATCTTCAGCAGCCTAGTCCCATCGTGAGGCAAAATGAAATATTTGATAGGTTTGTGTAGGCTGGCTAGGGACGGACATATTTGACTAGAGAGGTTCATATTTTATGTATAGTTTAGCTAGTTATGTTGCTGTGATTGGTGAAAACATACAGCGAGCTTCATACAT : CGTACACCTTAATATTTTGGTGTTGGCTTTTACATTTTATGATTCGGTTAGTGCACTACTTAATGCAACTTTATTCAGAT</gDNA_template>
            <first_frame> K  W  H  S  R  D  T  N  F  S  *  *  L  A  S  S  A  A  S  E  V  S  C  A  S  S  F  Y  Q  :  M  S  A  T  *  N  I  V  T  E  A  Q  *  H  A  T  C  S  A  *  L  P  S  F  T  *  P  *  Y  S  F  L  S  Q  T  F  R  R  C  Y  S  F  G  C  H  R  M  P  S  F  R  I  F  G  Y  V  K  L  F  M  C  Q  *  *  N  T  A  *  Y  S  S  N  L  W  T  S  S  S  F  G  C  F  I  L  P  K  H  F  S  *   : V  C  E  A  G  Y  A  D  C  S  Q  A  S  *  L  *  G  H  N  I  S  F  H  G  C  H  S  P  *  L  Y  V  R   : G  S  G  A  *  *  L  Q  F  I  D  I  S  V  L  G  S  S  S  P  S  E  H  *  T  S  T  L  S  Q  :  V  Y  *  P  *  L  A  L  W  N  V  I  I  N  Y  C  F  *  L  P  I  A  S  K  N  Q  Y  N  F  K  C  S  Q   : K  I  S  F  A  E  A  G  K  L  D  N  N  C  I  T  V  S  E  F  A  R  S  R  P  Y  *  V  *  I  A  H  Q  F  C  L  *  S  F  Q  *  W  W  W  L  S  C  A  *  I  L  S  S  G  *  L  *   : E  L  D  T  C  G  F  L  Q  H  F  F  G  F  S  F  T  W  W  L  P  C  F  N  F  S  C  A  *  V  P  I  S  *  T  S  I  F  R  W  L  *  S  S  *  S  S  I  I  L  P   : R  W  S  *  V  T  *  S  W  Y  M  P  Q  N  E  Y  A  S  Y  *  S  S  T  N  G  F  T  *  A  E  G  L  W  C  A  L  *  S  I  Y  *  L  P  P  V  N  L  F  *  C  F  I  L  Q  :  P  T  Q  G  *  L  F  I  C  H  D  F  V  V  P  P  H  R  V  I  S  I  N  V  M  S  I  C  W  L  *  W  T  P  L  F  A  V  P  P  K  L  D  L  P  *  S  I  L  Y  V  F  G  Y  L  A  T  C  L  *  I  M  L  A  V  K   : G  P  K  V  A  S  M  Q  V  S  H  *  Y  I  F  G  T  P  L  *  R  K  C  S  S  S  P  L  *  V  G  S  V  V  W  D  L  M  P  I  S  H  *  G  I  A  C  L  L  H  T  F  E  S  C  Q  L  E  W  M  Y  *  Y  A  *  F  K  L  G  I  F  W  R  S  T  V  T  N  T  Q  C  *  Y  T  S  C  I  F  P  G  R  T  A  V  V  K  *  T  T  K  A  F  A  R  E  P  *  L  C  R  L  P  K  Y  K  K  G  A  Y  S  N  G  T  R  F  P  F  V  I  I  K  P  F  P  V  W  E  F  E  G  G  *  Y  S  L  L  Q  L  V  R  S  Q  F  E  :  Q  L  L  F  I  G  I  I  A  T  G  M  S  K  I  K  *  P  L  S  S   : V  L  Q  R  *  *  G  I  S  *  S  C  C  V  T  M  Y  D  A  *  D  A  *  R  S  L  L  S  Q   : D  L  S  I  E  H  D  E  V  A  G  C  M  S  Q  F  E  T  H  L  Q  Q  P  S  P  I  V  R  Q  N  E  I  F  D  R  F  V  *  A  G  *  G  R  T  Y  L  T  R  E  V  H  I  L  C  I  V  *  L  V  M  L  L  *  L  V  K  T  Y  S  E  L  H  T   : S  Y  T  L  I  F  W  C  W  L  L  H  F  M  I  R  L  V  H  Y  L  M  Q  L  Y  S  D </first_frame>
            <second_frame>  N  G  I  Q  E  I  P  I  S  H  D  S  L  R  L  L  Q  L  V  K  C  R  V  L  R  V  S  I  R :   C  P  Q  L  E  T  L  S  L  K  R  S  S  M  P  H  A  V  L  N  C  P  L  L  H  D  L  D  I  A  S  C  H  K  L  S  D  A  A  I  R  S  A  A  T  A  C  P  L  L  E  S  L  D  M  S  N  C  S  C  V  S  D  E  T  L  R  D  I  A  Q  T  C  G  H  L  R  V  L  D  A  S  Y  C  P  N  I  S  L  E  :  S  V  R  L  V  M  L  T  V  L  K  L  H  S  C  E  G  I  T  S  A  S  M  A  A  I  A  H  S  Y  M  L  E  :  V  L  E  L  D  N  C  S  L  L  T  S  V  S  L  D  L  P  R  L  Q  S  I  R  L  V  H  C  R  K :   F  I  D  L  N  L  H  C  G  M  L  S  S  I  T  V  S  N  C  P  L  L  Q  R  I  N  I  T  S  S  A  L  K  :  K  L  V  L  Q  K  Q  E  S  L  T  T  I  A  L  Q  C  P  N  L  L  E  V  D  L  T  E  C  E  S  L  T  N  S  V  C  E  V  F  S  D  G  G  G  C  P  V  L  K  S  L  V  L  D  N  C  E  :  S  L  T  L  V  A  F  C  S  T  S  L  V  S  L  S  L  G  G  C  R  A  L  I  S  L  A  L  R  C  P  Y  L  E  Q  V  S  L  D  G  C  D  H  L  E  V  A  S  F  C  P  :  V  G  L  R  S  L  N  L  G  I  C  P  K  M  N  M  L  H  I  E  A  P  Q  M  A  S  L  E  L  K  G  C  G  V  L  S  E  A  S  I  N  C  P  L  L  T  S  F  D  A  S  F  C  S :   Q  L  K  D  D  C  L  S  A  T  T  S  S  C  P  L  I  E  S  L  V  L  M  S  C  P  S  V  G  C  D  G  L  L  S  L  Q  S  L  P  N  L  T  Y  L  D  L  S  Y  T  F  L  V  T  L  Q  P  V  Y  E  S  C  L  Q  L  K  :  V  L  K  L  Q  A  C  K  Y  L  T  D  T  S  L  E  P  L  Y  K  E  N  A  L  P  A  L  C  E  L  D  L  S  Y  G  T  L  C  Q  S  A  I  E  E  L  L  A  C  C  T  H  L  S  H  V  S  L  N  G  C  I  N  M  H  D  L  N  W  G  F  S  G  D  Q  L  S  Q  I  P  S  V  S  I  P  H  V  S  S  L  G  E  Q  Q  L  S  N  E  Q  P  K  R  L  L  E  N  L  N  C  V  G  C  P  N  I  K  K  V  L  I  P  M  A  Q  G  F  L  L  S  S  L  N  L  S  L  S  G  N  L  K  E  V  D  I  A  C  Y  N  L  C  V  L  N  L  S :   N  C  C  S  L  E  S  L  Q  L  E  C  P  R  L  S  S  L  F  L  Q  :  S  C  N  V  D  E  E  S  V  E  A  A  V  S  R  C  M  M  L  E  T  L  D  V  R  F  C  P  K  :  I  C  P  L  N  M  T  R  L  R  V  A  C  P  S  L  K  R  I  F  S  S  L  V  P  S  *  G  K  M  K  Y  L  I  G  L  C  R  L  A  R  D  G  H  I  *  L  E  R  F  I  F  Y  V  *  F  S  *  L  C  C  C  D  W  *  K  H  T  A  S  F  I  H  :  R  T  P  *  Y  F  G  V  G  F  Y  I  L  *  F  G  *  C  T  T  *  C  N  F  I  Q   </second_frame>
            <third_frame>   M  A  F  K  R  Y  Q  F  L  M  I  A  C  V  F  C  S  *  *  S  V  V  C  F  E  F  L  S   : D  V  R  N  L  K  H  C  H  *  S  A  V  A  C  H  M  Q  C  L  I  A  L  F  Y  M  T  L  I  *  L  P  V  T  N  F  P  T  L  L  F  V  R  L  P  P  H  A  L  F  *  N  L  W  I  C  Q  I  V  H  V  S  V  M  K  H  C  V  I  *  L  K  L  V  D  I  F  E  F  W  M  L  H  T  A  Q  T  F  L  L  S :   L  *  G  W  L  C  *  L  F  S  S  F  I  V  V  R  A  *  H  Q  L  P  W  L  P  *  P  I  A  I  C  *  R :   F  W  S  L  I  I  A  V  Y  *  H  Q  C  P  W  I  F  L  A  F  R  A  L  D  *  Y  I  V  A   : S  L  L  T  L  T  C  I  V  E  C  Y  H  Q  L  L  F  L  I  A  H  C  F  K  E  S  I  *  L  Q  V  L  S  K :   N  *  F  C  R  S  R  K  A  *  Q  Q  L  H  Y  S  V  R  I  C  *  K  *  T  L  L  S  V  N  R  S  P  I  L  F  V  K  F  S  V  M  V  V  A  V  L  C  L  N  P  *  F  W  I  T  V  R :   A  *  H  L  W  L  S  A  A  L  L  W  F  L  F  H  L  V  V  A  V  L  *  F  L  L  R  L  G  A  H  I  L  N  K  Y  L  *  M  V  V  I  I  L  K  *  H  H  F  A  P :   L  V  L  G  H  L  I  L  V  Y  A  P  K  *  I  C  F  I  L  K  L  H  K  W  L  H  L  S  *  R  A  V  V  C  S  L  K  H  L  L  I  A  P  C  *  P  L  L  M  L  H  S  A   : A  N  S  R  M  I  V  Y  L  P  R  L  R  R  A  P  S  S  S  H  *  Y  *  C  H  V  H  L  L  A  V  M  D  S  S  L  C  S  P  S  Q  T  *  P  T  L  I  Y  P  I  R  F  W  L  P  C  N  L  F  M  N  H  A  C  S  *  R :   S  *  S  C  K  H  A  S  I  S  L  I  H  L  W  N  P  S  I  K  K  M  L  F  Q  P  F  V  S  W  I  C  R  M  G  P  Y  A  N  Q  P  L  R  N  C  L  L  A  A  H  I  *  V  M  S  A  *  M  D  V  L  I  C  M  I  *  I  G  D  F  L  E  I  N  C  H  K  Y  P  V  L  V  Y  L  M  Y  L  P  W  E  N  S  S  C  Q  M  N  N  Q  S  V  C  *  R  T  L  T  V  *  A  A  Q  I  *  K  R  C  L  F  Q  W  H  K  V  S  F  C  H  H  *  T  F  P  C  L  G  I  *  R  R  L  I  *  L  V  T  T  C  A  F  S  I  *   : A  I  A  V  H  W  N  H  C  N  W  N  V  Q  D  *  V  A  S  F  F  S :   P  A  T  L  M  R  N  Q  L  K  L  L  C  H  D  V  *  C  L  R  R  L  T  F  A  F  V  P  R :   F  V  H  *  T  *  R  G  C  G  L  H  V  P  V  *  N  A  S  S  A  A  *  S  H  R  E  A  K  *  N  I  *  *  V  C  V  G  W  L  G  T  D  I  F  D  *  R  G  S  Y  F  M  Y  S  L  A  S  Y  V  A  V  I  G  E  N  I  Q  R  A  S  Y  I :   V  H  L  N  I  L  V  L  A  F  T  F  Y  D  S  V  S  A  L  L  N  A  T  L  F  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71205" stop="71120"/>
                    <exon start="71039" stop="70769"/>
                    <exon start="70682" stop="70584"/>
                    <exon start="70486" stop="70398"/>
                    <exon start="70288" stop="70189"/>
                    <exon start="70090" stop="69920"/>
                    <exon start="68343" stop="68191"/>
                    <exon start="68028" stop="67868"/>
                    <exon start="67784" stop="67586"/>
                    <exon start="66002" stop="65542"/>
                    <exon start="65444" stop="65381"/>
                    <exon start="64389" stop="64303"/>
                    <exon start="64200" stop="64120"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2019</number_coding_nucleotides>
                  <number_encoded_amino_acids>673</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGIQEIPISHDSLRLLQLVKCRVLRVSIRCPQLETLSLKRSSMPHAVLNCPLLHDLDIASCHKLSDAAIRSAATACPLLESLDMSNCSCVSDETLRDIAQTCGHLRVLDASYCPNISLESVRLVMLTVLKLHSCEGITSASMAAIAHSYMLEVLELDNCSLLTSVSLDLPRLQSIRLVHCRKFIDLNLHCGMLSSITVSNCPLLQRINITSSALKKLVLQKQESLTTIALQCPNLLEVDLTECESLTNSVCEVFSDGGGCPVLKSLVLDNCESLTLVAFCSTSLVSLSLGGCRALISLALRCPYLEQVSLDGCDHLEVASFCPVGLRSLNLGICPKMNMLHIEAPQMASLELKGCGVLSEASINCPLLTSFDASFCSQLKDDCLSATTSSCPLIESLVLMSCPSVGCDGLLSLQSLPNLTYLDLSYTFLVTLQPVYESCLQLKVLKLQACKYLTDTSLEPLYKENALPALCELDLSYGTLCQSAIEELLACCTHLSHVSLNGCINMHDLNWGFSGDQLSQIPSVSIPHVSSLGEQQLSNEQPKRLLENLNCVGCPNIKKVLIPMAQGFLLSSLNLSLSGNLKEVDIACYNLCVLNLSNCCSLESLQLECPRLSSLFLQSCNVDEESVEAAVSRCMMLETLDVRFCPKICPLNMTRLRVACPSLKRIFSSLVPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="73233" PGL_stop="71693"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73233" e_stop="72519"/>
            <exon e_start="72007" e_stop="71836"/>
            <exon e_start="71734" e_stop="71693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.898" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73233" e_stop="72519" e_length="715"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.996">
            <gDNA_intron_boundary i_start="72518" i_stop="72008" i_length="511"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72007" e_stop="71836" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.898">
            <gDNA_intron_boundary i_start="71835" i_stop="71735" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71734" e_stop="71693" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73233" stop="72629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72718" stop="72519"/>
              <exon start="72007" stop="71836"/>
              <exon start="71734" stop="71693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337889" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCACTGCACTTCTCATACAGTTTTCTTTCTCTCTCTATGCATACACCTGTATCGATTGTTTTCTGCTACTCCATTCTCCGGTTTGTCGAAAATTCTTGAACAAGAATTTGTTAGACTCTGTGAACTGTGTAATTTGTGTGCTTTGTCGTGAAAAAGGAGTCGTTTGGTGTAATTTGTTGAAAAGTTAGGTTTTTTGGGGGGAAAGTTTTAGATCGTGACCTAGGGTTTCTGAAGATCAGAAATTGATAAAAAAAATTGGGTCTATTCTTTATTTTTCTTGCTTTCTTAGTGTGGTGTGAGTGAGTGTATGAGGATTTGGTGTTGTTTATGTTTTGGAGAAGAAGAAGATAATAAGAAGGGCTACAAGAGTATGAGGGACCCGATTTTGGGGAATAACGGTGACGAATCTCCAGATGAGAATTCGGCATTTGACTGGAGGAATGTTTTTGAAGGTGTCAATGTTGCAGCAGTGGTGAGTCCACAAGCGGGCGCTGTAGGTGATCTTGGTGTTCCCAAGAATGAGGAGATTGATTTTGATAGTAACTGGACATCCAGTACAGTGGAGGTGAAGAATGAAAGTTATAGTGGTGAGAAAATGTTGGATGTTAATTTGAATTTGGGTTTGAGTGGAGAGGCTTCATCCTCAACAGTGCTGAAAGAGGATTCTGATCCTTTTACCTGTAGTAAAAGGCCCAAAGTTAACTCCTTTTCGCT : GGATTGGGACAACCACTTGTTGCAGGAAACCAGTTACCTATGTCCAATGAACGAGGGTGGTGGAGATGTGAGTTTATCTAACTTACTTGGTGCAACAGATGATGAGGGGAAAGATTCTAAAATGGAGGATTTAGATGTGCGGATGGATCTTACTGATGACTTGTTGCATATG : GTGTTCTCCTTTTTGGACCATATTGATCTTTGTCGAGCTGCA</gDNA_template>
            <first_frame> L  T  A  L  L  I  Q  F  S  F  S  L  Y  A  Y  T  C  I  D  C  F  L  L  L  H  S  P  V  C  R  K  F  L  N  K  N  L  L  D  S  V  N  C  V  I  C  V  L  C  R  E  K  G  V  V  W  C  N  L  L  K  S  *  V  F  W  G  E  S  F  R  S  *  P  R  V  S  E  D  Q  K  L  I  K  K  I  G  S  I  L  Y  F  S  C  F  L  S  V  V  *  V  S  V  *  G  F  G  V  V  Y  V  L  E  K  K  K  I  I  R  R  A  T  R  V  *  G  T  R  F  W  G  I  T  V  T  N  L  Q  M  R  I  R  H  L  T  G  G  M  F  L  K  V  S  M  L  Q  Q  W  *  V  H  K  R  A  L  *  V  I  L  V  F  P  R  M  R  R  L  I  L  I  V  T  G  H  P  V  Q  W  R  *  R  M  K  V  I  V  V  R  K  C  W  M  L  I  *  I  W  V  *  V  E  R  L  H  P  Q  Q  C  *  K  R  I  L  I  L  L  P  V  V  K  G  P  K  L  T  P  F  R   : W  I  G  T  T  T  C  C  R  K  P  V  T  Y  V  Q  *  T  R  V  V  E  M  *  V  Y  L  T  Y  L  V  Q  Q  M  M  R  G  K  I  L  K  W  R  I  *  M  C  G  W  I  L  L  M  T  C  C  I  W :   C  S  P  F  W  T  I  L  I  F  V  E  L   </first_frame>
            <second_frame>  S  L  H  F  S  Y  S  F  L  S  L  S  M  H  T  P  V  S  I  V  F  C  Y  S  I  L  R  F  V  E  N  S  *  T  R  I  C  *  T  L  *  T  V  *  F  V  C  F  V  V  K  K  E  S  F  G  V  I  C  *  K  V  R  F  F  G  G  K  V  L  D  R  D  L  G  F  L  K  I  R  N  *  *  K  K  L  G  L  F  F  I  F  L  A  F  L  V  W  C  E  *  V  Y  E  D  L  V  L  F  M  F  W  R  R  R  R  *  *  E  G  L  Q  E  Y  E  G  P  D  F  G  E  *  R  *  R  I  S  R  *  E  F  G  I  *  L  E  E  C  F  *  R  C  Q  C  C  S  S  G  E  S  T  S  G  R  C  R  *  S  W  C  S  Q  E  *  G  D  *  F  *  *  *  L  D  I  Q  Y  S  G  G  E  E  *  K  L  *  W  *  E  N  V  G  C  *  F  E  F  G  F  E  W  R  G  F  I  L  N  S  A  E  R  G  F  *  S  F  Y  L  *  *  K  A  Q  S  *  L  L  F  A  :  G  L  G  Q  P  L  V  A  G  N  Q  L  P  M  S  N  E  R  G  W  W  R  C  E  F  I  *  L  T  W  C  N  R  *  *  G  E  R  F  *  N  G  G  F  R  C  A  D  G  S  Y  *  *  L  V  A  Y   : G  V  L  L  F  G  P  Y  *  S  L  S  S  C  </second_frame>
            <third_frame>   H  C  T  S  H  T  V  F  F  L  S  L  C  I  H  L  Y  R  L  F  S  A  T  P  F  S  G  L  S  K  I  L  E  Q  E  F  V  R  L  C  E  L  C  N  L  C  A  L  S  *  K  R  S  R  L  V  *  F  V  E  K  L  G  F  L  G  G  K  F  *  I  V  T  *  G  F  *  R  S  E  I  D  K  K  N  W  V  Y  S  L  F  F  L  L  S  *  C  G  V  S  E  C  M  R  I  W  C  C  L  C  F  G  E  E  E  D  N  K  K  G  Y  K  S  M  R  D  P  I  L  G  N  N  G  D  E  S  P  D  E  N  S  A  F  D  W  R  N  V  F  E  G  V  N  V  A  A  V  V  S  P  Q  A  G  A  V  G  D  L  G  V  P  K  N  E  E  I  D  F  D  S  N  W  T  S  S  T  V  E  V  K  N  E  S  Y  S  G  E  K  M  L  D  V  N  L  N  L  G  L  S  G  E  A  S  S  S  T  V  L  K  E  D  S  D  P  F  T  C  S  K  R  P  K  V  N  S  F  S  L :   D  W  D  N  H  L  L  Q  E  T  S  Y  L  C  P  M  N  E  G  G  G  D  V  S  L  S  N  L  L  G  A  T  D  D  E  G  K  D  S  K  M  E  D  L  D  V  R  M  D  L  T  D  D  L  L  H  M  :  V  F  S  F  L  D  H  I  D  L  C  R  A  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72943" stop="72519"/>
                    <exon start="72007" stop="71836"/>
                    <exon start="71734" stop="71693"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGVSECMRIWCCLCFGEEEDNKKGYKSMRDPILGNNGDESPDENSAFDWRNVFEGVNVAAVVSPQAGAVGDLGVPKNEEIDFDSNWTSSTVEVKNESYSGEKMLDVNLNLGLSGEASSSTVLKEDSDPFTCSKRPKVNSFSLDWDNHLLQETSYLCPMNEGGGDVSLSNLLGATDDEGKDSKMEDLDVRMDLTDDLLHMVFSFLDHIDLCRAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="112248" PGL_stop="113358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112248" e_stop="113358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="112248" e_stop="113358" e_length="1111"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112248" stop="112874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112248" stop="112824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112463" stop="113225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112490" stop="113059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112795" stop="113191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112979" stop="113358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTGTTATAATAGTTGTGTATGTTGATGACTTGAACATCATTGGCACTCGTAAAGAGCTGTTAGAAGTTGTTGGGTGTCTGAAAATAGAATTTAAAATGAAAGATCTTGGCAAGATAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAATATATTAAAGCATTTTTACATGGATAAGTCACATCCATTGAGTACTCCAATGGTGGTAAGATTGTTTTACATCAGTACAGATCCATTTCGATCTCAAGAGAAGAATGAAGAGCTTGTTGGTGATGAAACTCCTTACATTAGTGAGTCGGGGCACTAATGTACCTTGCTAACAATACTCGATCAGATATCTGTTTTGCAGTAATTCTAGTGGAAAGATTTAGTTCCTCCTCAACAAGAAGACATTGGAATAGTGTTAAACACGTACTTCGATATCTTTTTGAGGGACGATGGACATGGGTTTATTCTATTCCAATGAATACAAGTCAGAACTGATTGGTTACGCAGATGTAAGGTATTTATCTGATCCGCATAAAGCTCGATCAAAAACAACTATTTGTTAAATGTGGAGATACGACAATATCTTGTCGATCAATGAAGCAAACATTGGTATCCACTTCTTCAAATCATGCAGAAATAACAGTCATCCATGAAGCAAGTCGAGACTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAGAGAATATACCAACCACAATGTACGAAGATAATGTTTCATGTATAGCTCAATTAAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATTTAACCATAGTTCTTTTTCATGCTTGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCATTCAAGTGATAATCTTGTTGATTTATTCACTAAGGCATCGCCAACATCAATGTTTGAGAAGTTGATATACAAGATTGGAATGCGCCATTTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGTGAAATATGTGTTGTACTCTTTCCTTAACTATGGTTTTGTCCCAAGTTGGGTTTTTCTGGTAAGGTTTTTAAT</gDNA_template>
            <first_frame> I  C  Y  N  S  C  V  C  *  *  L  E  H  H  W  H  S  *  R  A  V  R  S  C  W  V  S  E  N  R  I  *  N  E  R  S  W  Q  D  K  I  L  S  W  P  T  D  *  E  F  V  K  W  N  T  C  S  S  I  N  V  H  R  K  Y  I  K  A  F  L  H  G  *  V  T  S  I  E  Y  S  N  G  G  K  I  V  L  H  Q  Y  R  S  I  S  I  S  R  E  E  *  R  A  C  W  *  *  N  S  L  H  *  *  V  G  A  L  M  Y  L  A  N  N  T  R  S  D  I  C  F  A  V  I  L  V  E  R  F  S  S  S  S  T  R  R  H  W  N  S  V  K  H  V  L  R  Y  L  F  E  G  R  W  T  W  V  Y  S  I  P  M  N  T  S  Q  N  *  L  V  T  Q  M  *  G  I  Y  L  I  R  I  K  L  D  Q  K  Q  L  F  V  K  C  G  D  T  T  I  S  C  R  S  M  K  Q  T  L  V  S  T  S  S  N  H  A  E  I  T  V  I  H  E  A  S  R  D  C  V  W  L  R  S  M  T  H  H  I  Q  E  M  C  G  F  S  L  K  E  N  I  P  T  T  M  Y  E  D  N  V  S  C  I  A  Q  L  K  G  G  Y  I  K  G  D  R  T  K  H  I  *  P  *  F  F  F  M  L  D  L  Q  Q  N  G  E  I  E  V  Q  Q  I  H  S  S  D  N  L  V  D  L  F  T  K  A  S  P  T  S  M  F  E  K  L  I  Y  K  I  G  M  R  H  F  R  D  I  K  *  S  F  H  Q  G  E  *  N  M  C  C  T  L  S  L  T  M  V  L  S  Q  V  G  F  F  W  *  G  F  *  </first_frame>
            <second_frame>  F  V  I  I  V  V  Y  V  D  D  L  N  I  I  G  T  R  K  E  L  L  E  V  V  G  C  L  K  I  E  F  K  M  K  D  L  G  K  I  K  F  C  L  G  L  Q  I  E  N  L  S  N  G  I  L  V  H  Q  S  T  Y  T  E  N  I  L  K  H  F  Y  M  D  K  S  H  P  L  S  T  P  M  V  V  R  L  F  Y  I  S  T  D  P  F  R  S  Q  E  K  N  E  E  L  V  G  D  E  T  P  Y  I  S  E  S  G  H  *  C  T  L  L  T  I  L  D  Q  I  S  V  L  Q  *  F  *  W  K  D  L  V  P  P  Q  Q  E  D  I  G  I  V  L  N  T  Y  F  D  I  F  L  R  D  D  G  H  G  F  I  L  F  Q  *  I  Q  V  R  T  D  W  L  R  R  C  K  V  F  I  *  S  A  *  S  S  I  K  N  N  Y  L  L  N  V  E  I  R  Q  Y  L  V  D  Q  *  S  K  H  W  Y  P  L  L  Q  I  M  Q  K  *  Q  S  S  M  K  Q  V  E  T  A  S  G  *  D  Q  *  P  I  I  F  R  K  C  V  V  F  L  *  K  R  I  Y  Q  P  Q  C  T  K  I  M  F  H  V  *  L  N  *  K  E  D  T  S  K  E  T  G  Q  S  I  F  N  H  S  S  F  S  C  L  I  F  N  K  M  V  R  *  K  F  N  K  F  I  Q  V  I  I  L  L  I  Y  S  L  R  H  R  Q  H  Q  C  L  R  S  *  Y  T  R  L  E  C  A  I  S  E  I  S  S  K  V  F  I  R  G  S  E  I  C  V  V  L  F  P  *  L  W  F  C  P  K  L  G  F  S  G  K  V  F  N </second_frame>
            <third_frame>   L  L  *  *  L  C  M  L  M  T  *  T  S  L  A  L  V  K  S  C  *  K  L  L  G  V  *  K  *  N  L  K  *  K  I  L  A  R  *  N  F  V  L  A  Y  R  L  R  I  C  Q  M  E  Y  L  F  I  N  Q  R  T  Q  K  I  Y  *  S  I  F  T  W  I  S  H  I  H  *  V  L  Q  W  W  *  D  C  F  T  S  V  Q  I  H  F  D  L  K  R  R  M  K  S  L  L  V  M  K  L  L  T  L  V  S  R  G  T  N  V  P  C  *  Q  Y  S  I  R  Y  L  F  C  S  N  S  S  G  K  I  *  F  L  L  N  K  K  T  L  E  *  C  *  T  R  T  S  I  S  F  *  G  T  M  D  M  G  L  F  Y  S  N  E  Y  K  S  E  L  I  G  Y  A  D  V  R  Y  L  S  D  P  H  K  A  R  S  K  T  T  I  C  *  M  W  R  Y  D  N  I  L  S  I  N  E  A  N  I  G  I  H  F  F  K  S  C  R  N  N  S  H  P  *  S  K  S  R  L  R  L  V  E  I  N  D  P  S  Y  S  G  N  V  W  F  F  F  E  R  E  Y  T  N  H  N  V  R  R  *  C  F  M  Y  S  S  I  K  R  R  I  H  Q  R  R  P  D  K  A  Y  L  T  I  V  L  F  H  A  *  S  S  T  K  W  *  D  R  S  S  T  N  S  F  K  *  *  S  C  *  F  I  H  *  G  I  A  N  I  N  V  *  E  V  D  I  Q  D  W  N  A  P  F  P  R  Y  Q  V  K  F  S  S  G  G  V  K  Y  V  L  Y  S  F  L  N  Y  G  F  V  P  S  W  V  F  L  V  R  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112249" stop="112596"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVIIVVYVDDLNIIGTRKELLEVVGCLKIEFKMKDLGKIKFCLGLQIENLSNGILVHQSTYTENILKHFYMDKSHPLSTPMVVRLFYISTDPFRSQEKNEELVGDETPYISESGH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112791" stop="113099"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIYLIRIKLDQKQLFVKCGDTTISCRSMKQTLVSTSSNHAEITVIHEASRDCVWLRSMTHHIQEMCGFSLKENIPTTMYEDNVSCIAQLKGGYIKGDRTKHI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="127136" PGL_stop="126625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127136" e_stop="126625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="127136" e_stop="126625" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127136" stop="126625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAACAACAACACTTAGACAAATTAAATATACGCAATAACAAGCTCAATATTGATCAATCACAAGTTCTGCAGAAAGGCAATCAGAAGATCAGCAAAACACAATATTAAGTTCACTAATGATAAGTATGTGCAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATTTGTCGCGGCGCACGACACGACCCTCGATAATTGTAACCATCGCGGCGCGCGATACGTCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACATGTCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACAAATAATGAGAAGATGACCATTTTCATAACATCGCACAGTTCACAACCACACAAACATGAAGTTACATCAACAATGA</gDNA_template>
            <first_frame> L  N  N  N  T  *  T  N  *  I  Y  A  I  T  S  S  I  L  I  N  H  K  F  C  R  K  A  I  R  R  S  A  K  H  N  I  K  F  T  N  D  K  Y  V  Q  C  N  G  M  Q  C  Q  V  *  *  C  M  S  D  L  V  I  H  T  R  C  L  S  V  R  D  P  W  G  T  Y  L  S  M  H  L  S  R  R  T  T  R  P  S  I  I  V  T  I  A  A  R  D  T  S  R  N  I  V  S  I  A  A  R  D  T  S  L  E  M  V  H  P  L  K  Y  P  F  F  L  N  A  H  N  T  C  H  N  Q  C  L  R  I  M  Q  M  T  S  S  H  K  *  *  E  D  D  H  F  H  N  I  A  Q  F  T  T  T  Q  T  *  S  Y  I  N  N   </first_frame>
            <second_frame>  S  T  T  T  L  R  Q  I  K  Y  T  Q  *  Q  A  Q  Y  *  S  I  T  S  S  A  E  R  Q  S  E  D  Q  Q  N  T  I  L  S  S  L  M  I  S  M  C  N  A  M  E  C  N  V  K  Y  N  D  A  C  L  T  *  *  Y  T  P  A  V  S  Q  S  G  T  H  G  G  H  I  C  P  C  I  C  R  G  A  R  H  D  P  R  *  L  *  P  S  R  R  A  I  R  L  E  I  *  Y  P  S  R  R  A  I  R  P  S  K  W  Y  I  L  L  S  T  H  S  F  S  M  H  I  T  H  V  T  T  N  A  S  E  *  C  R  *  Q  V  H  T  N  N  E  K  M  T  I  F  I  T  S  H  S  S  Q  P  H  K  H  E  V  T  S  T  M  </second_frame>
            <third_frame>   Q  Q  Q  H  L  D  K  L  N  I  R  N  N  K  L  N  I  D  Q  S  Q  V  L  Q  K  G  N  Q  K  I  S  K  T  Q  Y  *  V  H  *  *  *  V  C  A  M  Q  W  N  A  M  S  S  I  M  M  H  V  *  P  S  D  T  H  P  L  S  L  S  P  G  P  M  G  D  I  S  V  H  A  F  V  A  A  H  D  T  T  L  D  N  C  N  H  R  G  A  R  Y  V  S  K  Y  S  I  H  R  G  A  R  Y  V  P  R  N  G  T  S  S  *  V  P  I  L  S  Q  C  T  *  H  M  S  Q  P  M  P  Q  N  N  A  D  D  K  F  T  Q  I  M  R  R  *  P  F  S  *  H  R  T  V  H  N  H  T  N  M  K  L  H  Q  Q  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126971" stop="126696"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CMSDLVIHTRCLSVRDPWGTYLSMHLSRRTTRPSIIVTIAARDTSRNIVSIAARDTSLEMVHPLKYPFFLNAHNTCHNQCLRIMQMTSSHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="132542" PGL_stop="129322"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132542" e_stop="132344"/>
            <exon e_start="132258" e_stop="132111"/>
            <exon e_start="131226" e_stop="131055"/>
            <exon e_start="130230" e_stop="130176"/>
            <exon e_start="130088" e_stop="129957"/>
            <exon e_start="129849" e_stop="129322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.965"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="132542" e_stop="132344" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="132343" i_stop="132259" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="132258" e_stop="132111" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="131226" e_stop="131055" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.987">
            <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="130230" e_stop="130176" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="130088" e_stop="129957" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="0.983">
            <gDNA_exon_boundary e_start="129849" e_stop="129322" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132542" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132509" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132509" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132481" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132468" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132460" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132459" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="130038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132456" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132449" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132446" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132446" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132446" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="130049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132446" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132444" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132444" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132444" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132443" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132443" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132443" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="130041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132442" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132442" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132442" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132442" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132441" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132441" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132441" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="130044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132441" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132441" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132440" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132439" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132438" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132438" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="130010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132437" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132437" stop="132344"/>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="129849" stop="129805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132189" stop="132111"/>
              <exon start="131226" stop="131068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132171" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132162" stop="132111"/>
              <exon start="131226" stop="131104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427094" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131224" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="130068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131223" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414840" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131194" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131189" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131186" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131185" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414885" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131175" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131155" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589902" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131119" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314460" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131112" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131111" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558064" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131102" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131093" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131091" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131081" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131071" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130053" stop="129957"/>
              <exon start="129849" stop="129758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130045" stop="129957"/>
              <exon start="129849" stop="129551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130012" stop="129957"/>
              <exon start="129849" stop="129469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130000" stop="129957"/>
              <exon start="129849" stop="129630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286313" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129971" stop="129957"/>
              <exon start="129849" stop="129513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129965" stop="129957"/>
              <exon start="129849" stop="129513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129800" stop="129322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129782" stop="129481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371752" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTTTAGAAGCAGGCTGAATTAATAAGAAAAGAGAGCCCAACTAGTAACCTGCCTTAAATCTTTGACAAACCCTTTCTCCCTTGTCCTAATCCAACTCTTCACTGCCTCTCATTTGTATCTTCCATCGGCCGCAGTGAATCAATATCAAACCCTAATCTCAACATGGCGACGCCTCAGATTAGTAAAAAACGAAAG : TTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG : GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG : GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG : GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAG : GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAGGTAAACAGGTTTCTTACAAATAAGGAAAATTTATTACTTTGCTAGTAGAGAACAATTTCCACCAGTGGAAATTCTTCACATGGTGTCTTTTCACGTCTTCTTAAAAACATTTCATCCTTATCACCCCCCTTCCACTTCTTATGGTATATGTTTATATTATGGTATATGTTTATATTATATTATATATATAT</gDNA_template>
            <first_frame> K  L  L  E  A  G  *  I  N  K  K  R  E  P  N  *  *  P  A  L  N  L  *  Q  T  L  S  P  L  S  *  S  N  S  S  L  P  L  I  C  I  F  H  R  P  Q  *  I  N  I  K  P  *  S  Q  H  G  D  A  S  D  *  *  K  T  K   : V  C  S  G  W  S  F  F  C  G  V  E  R  S  A  Y  K  R  V  G  G  G  W  L  L  G  S  *  S  *  G  Y  S  R  A  N  *  N  H  H  *  G  H  S  Y  S  E  R  S  W :   *  K  R  *  E  N  *  G  A  D  F  S  C  S  E  A  F  *  F  Q  G  K  H  C  *  A  L  C  R  E  S  Q  Q  *  G  S  L  C  H  C  S  G  R  V  T  A  I  Q  I  T  W  R  T  C  C  P  K  :  G  L  L  W  C  S  A  I  C  N  G  E  W  S  Q  G  M  *   : G  D  C  *  W  K  A  P  C  S  A  C  Q  V  H  E  V  *  G  W  L  Y  D  F  F  W  T  T  C  *  R  I  H  *  C  C  C  *  A  C  A  T  *  A   : G  C  A  R  Y  Q  S  Q  D  H  A  *  L  G  S  *  R  *  T  R  A  Y  D  P  I  A  R  F  G  D  Y  S  S  T  Q  G  G  R  R  V  C  C  S  S  S  Y  D  S  C  S  R  H  R  G  S  S  C  G  I  K  T  C  V  M  M  L  S  L  V  L  R  T  T  A  L  A  G  L  Y  F  L  F  F  F  F  F  D  C  *  I  L  G  Y  I  L  N  H  S  A  L  V  F  G  K  S  F  V  G  T  F  F  F  R  *  T  G  F  L  Q  I  R  K  I  Y  Y  F  A  S  R  E  Q  F  P  P  V  E  I  L  H  M  V  S  F  H  V  F  L  K  T  F  H  P  Y  H  P  P  S  T  S  Y  G  I  C  L  Y  Y  G  I  C  L  Y  Y  I  I  Y  I  </first_frame>
            <second_frame>  S  F  *  K  Q  A  E  L  I  R  K  E  S  P  T  S  N  L  P  *  I  F  D  K  P  F  L  P  C  P  N  P  T  L  H  C  L  S  F  V  S  S  I  G  R  S  E  S  I  S  N  P  N  L  N  M  A  T  P  Q  I  S  K  K  R  K  :  F  V  A  D  G  V  F  F  A  E  L  N  E  V  L  T  R  E  L  A  E  D  G  Y  S  G  V  E  V  R  V  T  P  V  R  T  E  I  I  I  R  A  T  R  T  Q  N  V  L   : G  E  K  G  R  R  I  R  E  L  T  S  V  V  Q  K  R  F  N  F  K  E  N  T  V  E  L  Y  A  E  K  V  N  N  R  G  L  C  A  I  A  Q  A  E  S  L  R  Y  K  L  L  G  G  L  A  V  R  R :   A  C  Y  G  V  L  R  F  V  M  E  S  G  A  K  G  C  E  :  V  I  V  S  G  K  L  R  A  Q  R  A  K  S  M  K  F  K  D  G  Y  M  I  S  S  G  Q  P  V  K  E  Y  I  D  A  A  V  R  H  V  L  L  R  Q  :  G  V  L  G  I  K  V  K  I  M  L  D  W  D  P  K  G  K  Q  G  P  M  T  P  L  P  D  L  V  T  I  H  P  P  K  E  E  E  E  F  V  V  P  P  P  M  I  A  A  P  A  I  E  V  L  P  V  A  *  K  P  V  L  *  C  Y  L  W  S  *  E  L  L  H  *  L  A  C  T  S  Y  F  F  S  F  L  T  A  E  Y  *  V  T  Y  *  T  I  L  L  *  F  L  E  K  V  L  L  E  H  F  F  S  G  K  Q  V  S  Y  K  *  G  K  F  I  T  L  L  V  E  N  N  F  H  Q  W  K  F  F  T  W  C  L  F  T  S  S  *  K  H  F  I  L  I  T  P  L  P  L  L  M  V  Y  V  Y  I  M  V  Y  V  Y  I  I  L  Y  I  Y </second_frame>
            <third_frame>   A  F  R  S  R  L  N  *  *  E  K  R  A  Q  L  V  T  C  L  K  S  L  T  N  P  F  S  L  V  L  I  Q  L  F  T  A  S  H  L  Y  L  P  S  A  A  V  N  Q  Y  Q  T  L  I  S  T  W  R  R  L  R  L  V  K  N  E  S :   L  *  R  M  E  F  F  L  R  S  *  T  K  C  L  Q  E  S  W  R  R  M  V  T  R  E  L  K  L  G  L  L  P  C  E  L  K  S  S  L  G  P  L  V  L  R  T  F  L  :  V  K  K  V  G  E  L  G  S  *  L  Q  L  F  R  S  V  L  I  S  R  K  T  L  L  S  S  M  Q  R  K  S  T  I  G  V  S  V  P  L  L  R  Q  S  H  C  D  T  N  Y  L  E  D  L  L  S  E   : G  L  A  M  V  F  C  D  L  *  W  R  V  E  P  R  D  V  R :   *  L  L  V  E  S  S  V  L  S  V  P  S  P  *  S  L  R  M  V  I  *  F  L  L  D  N  L  L  K  N  T  L  M  L  L  L  G  M  C  Y  L  G  R :   V  C  S  V  S  K  S  R  S  C  L  T  G  I  L  K  V  N  K  G  L  *  P  H  C  Q  I  W  *  L  F  I  H  P  R  R  K  K  S  L  L  F  L  L  L  *  *  L  L  P  P  S  R  F  F  L  W  H  K  N  L  C  Y  D  V  I  F  G  L  E  N  Y  C  T  S  W  L  V  L  P  I  F  F  L  F  *  L  L  N  T  R  L  H  T  E  P  F  C  S  S  F  W  K  K  F  C  W  N  I  F  F  Q  V  N  R  F  L  T  N  K  E  N  L  L  L  C  *  *  R  T  I  S  T  S  G  N  S  S  H  G  V  F  S  R  L  L  K  N  I  S  S  L  S  P  P  F  H  F  L  W  Y  M  F  I  L  W  Y  M  F  I  L  Y  Y  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132481" stop="132344"/>
                    <exon start="132258" stop="132111"/>
                    <exon start="131226" stop="131055"/>
                    <exon start="130230" stop="130176"/>
                    <exon start="130088" stop="129957"/>
                    <exon start="129849" stop="129673"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFDKPFLPCPNPTLHCLSFVSSIGRSESISNPNLNMATPQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFKENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHPPKEEEEFVVPPPMIAAPAIEVLPVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="132260" e_stop="132111"/>
            <exon e_start="131226" e_stop="131055"/>
            <exon e_start="130230" e_stop="130176"/>
            <exon e_start="130088" e_stop="129957"/>
            <exon e_start="129849" e_stop="129322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.980"/>
          <exon-intron don_prob="0.976" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="132260" e_stop="132111" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="132110" i_stop="131227" i_length="884"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="131226" e_stop="131055" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.987">
            <gDNA_intron_boundary i_start="131054" i_stop="130231" i_length="824"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="130230" e_stop="130176" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="130175" i_stop="130089" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="130088" e_stop="129957" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="129956" i_stop="129850" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="129849" e_stop="129322" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132260" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132258" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132250" stop="132111"/>
              <exon start="131226" stop="131062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132233" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132222" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132215" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132189" stop="132111"/>
              <exon start="131226" stop="131068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132171" stop="132111"/>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132162" stop="132111"/>
              <exon start="131226" stop="131104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131226" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427094" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131224" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="130068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131223" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414840" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131194" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131189" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131186" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131185" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414885" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131175" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131155" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589902" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131119" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314460" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131112" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131111" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558064" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131102" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131093" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131091" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131081" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131071" stop="131055"/>
              <exon start="130230" stop="130176"/>
              <exon start="130088" stop="129957"/>
              <exon start="129849" stop="129490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130053" stop="129957"/>
              <exon start="129849" stop="129758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130045" stop="129957"/>
              <exon start="129849" stop="129551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130012" stop="129957"/>
              <exon start="129849" stop="129469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130000" stop="129957"/>
              <exon start="129849" stop="129630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286313" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129971" stop="129957"/>
              <exon start="129849" stop="129513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129965" stop="129957"/>
              <exon start="129849" stop="129513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129800" stop="129322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129782" stop="129481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371752" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTGTAGCGGATGGAGTTTTTTTTGCGGAGTTGAACGAAGTGCTTACAAGAGAGTTGGCGGAGGATGGTTACTCGGGAGTTGAAGTTAGGGTTACTCCCGTGCGAACTGAAATCATCATTAGGGCCACTCGTACTCAGAACGTTCTTG : GTGAAAAAGGTAGGAGAATTAGGGAGCTGACTTCAGTTGTTCAGAAGCGTTTTAATTTCAAGGAAAACACTGTTGAGCTCTATGCAGAGAAAGTCAACAATAGGGGTCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAATTACTTGGAGGACTTGCTGTCCGAAG : GGCTTGCTATGGTGTTCTGCGATTTGTAATGGAGAGTGGAGCCAAGGGATGTGAG : GTGATTGTTAGTGGAAAGCTCCGTGCTCAGCGTGCCAAGTCCATGAAGTTTAAGGATGGTTATATGATTTCTTCTGGACAACCTGTTAAAGAATACATTGATGCTGCTGTTAGGCATGTGCTACTTAGGCAG : GGTGTGCTCGGTATCAAAGTCAAGATCATGCTTGACTGGGATCCTAAAGGTAAACAAGGGCCTATGACCCCATTGCCAGATTTGGTGACTATTCATCCACCCAAGGAGGAAGAAGAGTTTGTTGTTCCTCCTCCTATGATAGCTGCTCCCGCCATCGAGGTTCTTCCTGTGGCATAAAAACCTGTGTTATGATGTTATCTTTGGTCTTGAGAACTACTGCACTAGCTGGCTTGTACTTCCTATTTTTTTTCTTTTTTGACTGCTGAATACTAGGTTACATACTGAACCATTCTGCTCTAGTTTTTGGAAAAAGTTTTGTTGGAACATTTTTTTTCAGGTAAACAGGTTTCTTACAAATAAGGAAAATTTATTACTTTGCTAGTAGAGAACAATTTCCACCAGTGGAAATTCTTCACATGGTGTCTTTTCACGTCTTCTTAAAAACATTTCATCCTTATCACCCCCCTTCCACTTCTTATGGTATATGTTTATATTATGGTATATGTTTATATTATATTATATATATAT</gDNA_template>
            <first_frame> S  L  *  R  M  E  F  F  L  R  S  *  T  K  C  L  Q  E  S  W  R  R  M  V  T  R  E  L  K  L  G  L  L  P  C  E  L  K  S  S  L  G  P  L  V  L  R  T  F  L  :  V  K  K  V  G  E  L  G  S  *  L  Q  L  F  R  S  V  L  I  S  R  K  T  L  L  S  S  M  Q  R  K  S  T  I  G  V  S  V  P  L  L  R  Q  S  H  C  D  T  N  Y  L  E  D  L  L  S  E   : G  L  A  M  V  F  C  D  L  *  W  R  V  E  P  R  D  V  R :   *  L  L  V  E  S  S  V  L  S  V  P  S  P  *  S  L  R  M  V  I  *  F  L  L  D  N  L  L  K  N  T  L  M  L  L  L  G  M  C  Y  L  G  R :   V  C  S  V  S  K  S  R  S  C  L  T  G  I  L  K  V  N  K  G  L  *  P  H  C  Q  I  W  *  L  F  I  H  P  R  R  K  K  S  L  L  F  L  L  L  *  *  L  L  P  P  S  R  F  F  L  W  H  K  N  L  C  Y  D  V  I  F  G  L  E  N  Y  C  T  S  W  L  V  L  P  I  F  F  L  F  *  L  L  N  T  R  L  H  T  E  P  F  C  S  S  F  W  K  K  F  C  W  N  I  F  F  Q  V  N  R  F  L  T  N  K  E  N  L  L  L  C  *  *  R  T  I  S  T  S  G  N  S  S  H  G  V  F  S  R  L  L  K  N  I  S  S  L  S  P  P  F  H  F  L  W  Y  M  F  I  L  W  Y  M  F  I  L  Y  Y  I  Y   </first_frame>
            <second_frame>  V  C  S  G  W  S  F  F  C  G  V  E  R  S  A  Y  K  R  V  G  G  G  W  L  L  G  S  *  S  *  G  Y  S  R  A  N  *  N  H  H  *  G  H  S  Y  S  E  R  S  W :   *  K  R  *  E  N  *  G  A  D  F  S  C  S  E  A  F  *  F  Q  G  K  H  C  *  A  L  C  R  E  S  Q  Q  *  G  S  L  C  H  C  S  G  R  V  T  A  I  Q  I  T  W  R  T  C  C  P  K  :  G  L  L  W  C  S  A  I  C  N  G  E  W  S  Q  G  M  *   : G  D  C  *  W  K  A  P  C  S  A  C  Q  V  H  E  V  *  G  W  L  Y  D  F  F  W  T  T  C  *  R  I  H  *  C  C  C  *  A  C  A  T  *  A   : G  C  A  R  Y  Q  S  Q  D  H  A  *  L  G  S  *  R  *  T  R  A  Y  D  P  I  A  R  F  G  D  Y  S  S  T  Q  G  G  R  R  V  C  C  S  S  S  Y  D  S  C  S  R  H  R  G  S  S  C  G  I  K  T  C  V  M  M  L  S  L  V  L  R  T  T  A  L  A  G  L  Y  F  L  F  F  F  F  F  D  C  *  I  L  G  Y  I  L  N  H  S  A  L  V  F  G  K  S  F  V  G  T  F  F  F  R  *  T  G  F  L  Q  I  R  K  I  Y  Y  F  A  S  R  E  Q  F  P  P  V  E  I  L  H  M  V  S  F  H  V  F  L  K  T  F  H  P  Y  H  P  P  S  T  S  Y  G  I  C  L  Y  Y  G  I  C  L  Y  Y  I  I  Y  I  </second_frame>
            <third_frame>   F  V  A  D  G  V  F  F  A  E  L  N  E  V  L  T  R  E  L  A  E  D  G  Y  S  G  V  E  V  R  V  T  P  V  R  T  E  I  I  I  R  A  T  R  T  Q  N  V  L   : G  E  K  G  R  R  I  R  E  L  T  S  V  V  Q  K  R  F  N  F  K  E  N  T  V  E  L  Y  A  E  K  V  N  N  R  G  L  C  A  I  A  Q  A  E  S  L  R  Y  K  L  L  G  G  L  A  V  R  R :   A  C  Y  G  V  L  R  F  V  M  E  S  G  A  K  G  C  E  :  V  I  V  S  G  K  L  R  A  Q  R  A  K  S  M  K  F  K  D  G  Y  M  I  S  S  G  Q  P  V  K  E  Y  I  D  A  A  V  R  H  V  L  L  R  Q  :  G  V  L  G  I  K  V  K  I  M  L  D  W  D  P  K  G  K  Q  G  P  M  T  P  L  P  D  L  V  T  I  H  P  P  K  E  E  E  E  F  V  V  P  P  P  M  I  A  A  P  A  I  E  V  L  P  V  A  *  K  P  V  L  *  C  Y  L  W  S  *  E  L  L  H  *  L  A  C  T  S  Y  F  F  S  F  L  T  A  E  Y  *  V  T  Y  *  T  I  L  L  *  F  L  E  K  V  L  L  E  H  F  F  S  G  K  Q  V  S  Y  K  *  G  K  F  I  T  L  L  V  E  N  N  F  H  Q  W  K  F  F  T  W  C  L  F  T  S  S  *  K  H  F  I  L  I  T  P  L  P  L  L  M  V  Y  V  Y  I  M  V  Y  V  Y  I  I  L  Y  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0230N10.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132258" stop="132111"/>
                    <exon start="131226" stop="131055"/>
                    <exon start="130230" stop="130176"/>
                    <exon start="130088" stop="129957"/>
                    <exon start="129849" stop="129673"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFKENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHPPKEEEEFVVPPPMIAAPAIEVLPVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 449 chains have been computed
$ 
$ memory statistics:
$ 603512 bytes spliced alignments in total
$ 243 spliced alignments have been stored
$ 2483 bytes was the average size of a spliced alignment
$ 25720 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1978 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 509 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:11:34
-->
