<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:09:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340641" ref_strand="+" ref_description="SGN-E340641 [cTOF-1-M20]">
      <seq>ttcaaagagctttattttttatgctctttctgtaaactcggataaaagcttgaaggatagaatgtacaggtgatttgtggagtttggcaactcttgatgcacttggccctctccctctctgctttcacgcagagggtaaaaaggattcttcaccctgaagtaatgttgcaagcttggaggagaagagggttcagctctcgccgtttcagtaggagacatttgctatacttgaaaactttctaagtgaaaactgtaataactcgatgttcttgtgcattaacaattactctgttacgtttccccgaaattgtttacaaagttactttagaacttgcttacagttctcttcatgtcttgattatttcctgtatgagagtgaagtttggtgccnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="56837" stop="55849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56537" g_stop="56151" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="423"/>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E340641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56537" e_stop="56151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGAGCTTTATTTTTTATGCTCTTTCTGTAAACTCGGATAAAAGCTTGAAGGATAGAATGTACAGGTGATTTGTGGAGTTTGGCAACTCTTGATGCACTTGGCCCTCTCCCTCTCTGCTTTCACGCAGAGGGTAAAAAGGATTCTTCACCCTGAAGTAATGTTGCAAGCTTGGAGGAGAAGAGGGTTCAGCTCTCGCCGTTTCAGTAGGAGACATTTGCTATACTTGAAAACTTTCTAAGTGAAAACTGTAATAACTCGATGTTCTTGTGCATTAACAATTACTCTGTTACGTTTCCCCGAAATTGTTTACAAAGTTACTTTAGAACTTGCTTACAGTTCTCTTCATGTCTTGATTATTTCCTGTATGAGAGTGAAGTTTGGT</genome_strand>
        <mrna_strand>TTCAAAGAGCTTTATTTTTTATGCTCTTTCTGTAAACTCGGATAAAAGCTTGAAGGATAGAATGTACAGGTGATTTGTGGAGTTTGGCAACTCTTGATGCACTTGGCCCTCTCCCTCTCTGCTTTCACGCAGAGGGTAAAAAGGATTCTTCACCCTGAAGTAATGTTGCAAGCTTGGAGGAGAAGAGGGTTCAGCTCTCGCCGTTTCAGTAGGAGACATTTGCTATACTTGAAAACTTTCTAAGTGAAAACTGTAATAACTCGATGTTCTTGTGCATTAACAATTACTCTGTTACGTTTCCCCGAAATTGTTTACAAAGTTACTTTAGAACTTGCTTACAGTTCTCTTCATGTCTTGATTATTTCCTGTATGAGAGTGAAGTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735749" ref_strand="+" ref_description="SGN-E735749 [LC02DE04]">
      <seq>cgaataaacggggttattggtcactcttctaaggttttccattcaaagagctttattttttatgctctttctgtaaactcggataaaagcttgaaggatagaatgtacaggtgatttgtggagtttggcaactcttgatgcacttggccctctccctctctgctttcacgcagagggtaaaaaggattcttcaccctgaagtaatgttgcaagcttggaggagaagagggttcagctctcgccgtttcagtaggagacatttgctatacttgaaaactttctaagtgaaaactgtaataactcgatgttcttgtgcattaacaattactctgttacgtttccccgaaattgtttacaaagttactttagaacttgcttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="56876" stop="55898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56578" g_stop="56198" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="392"/>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E735749" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56578" e_stop="56198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAACGGGGTTATTGGTCACTCTTCTAAGGTTTTCCATTCAAAGAGCTTTATTTTTTATGCTCTTTCTGTAAACTCGGATAAAAGCTTGAAGGATAGAATGTACAGGTGATTTGTGGAGTTTGGCAACTCTTGATGCACTTGGCCCTCTCCCTCTCTGCTTTCACGCAGAGGGTAAAAAGGATTCTTCACCCTGAAGTAATGTTGCAAGCTTGGAGGAGAAGAGGGTTCAGCTCTCGCCGTTTCAGTAGGAGACATTTGCTATACTTGAAAACTTTCTAAGTGAAAACTGTAATAACTCGATGTTCTTGTGCATTAACAATTACTCTGTTACGTTTCCCCGAAATTGTTTACAAAGTTACTTTAGAACTTGCTTACA</genome_strand>
        <mrna_strand>CGAATAAACGGGGTTATTGGTCACTCTTCTAAGGTTTTCCATTCAAAGAGCTTTATTTTTTATGCTCTTTCTGTAAACTCGGATAAAAGCTTGAAGGATAGAATGTACAGGTGATTTGTGGAGTTTGGCAACTCTTGATGCACTTGGCCCTCTCCCTCTCTGCTTTCACGCAGAGGGTAAAAAGGATTCTTCACCCTGAAGTAATGTTGCAAGCTTGGAGGAGAAGAGGGTTCAGCTCTCGCCGTTTCAGTAGGAGACATTTGCTATACTTGAAAACTTTCTAAGTGAAAACTGTAATAACTCGATGTTCTTGTGCATTAACAATTACTCTGTTACGTTTCCCCGAAATTGTTTACAAAGTTACTTTAGAACTTGCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E606232" ref_strand="+" ref_description="SGN-E606232 [22171]">
      <seq>agagctttatttttgatgctctttctgtaaactccggataaaagcttgaaggatagaatgtacaggtgatttgtggagttcggcaactcttgatgcacttggccctctccctctctgctttcaagaagagggtaaaaatgattcttcaccctgaagtaatgttgcaggctcggaggagaagagggttcagctctgcagtttcagtaggagacatttgctagacttgaaaactttctaagtgaaaactgtaataactaaatgttcttgtgcattaacaattactctgttatgtttccctgaaattgtttacaaagttatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="56832" stop="55911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56532" g_stop="56211" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E606232" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56532" e_stop="56211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTTTATTTTTTATGCTCTTTCTGTAAACT-CGGATAAAAGCTTGAAGGATAGAATGTACAGGTGATTTGTGGAGTTTGGCAACTCTTGATGCACTTGGCCCTCTCCCTCTCTGCTTTCACGCAGAGGGTAAAAAGGATTCTTCACCCTGAAGTAATGTTGCAAGCTTGGAGGAGAAGAGGGTTCAGCTCTCGCCGTTTCAGTAGGAGACATTTGCTATACTTGAAAACTTTCTAAGTGAAAACTGTAATAACTCGATGTTCTTGTGCATTAACAATTACTCTGTTACGTTTCCCCGAAATTGTTTACAAAGTTACTTTA</genome_strand>
        <mrna_strand>AGAGCTTTATTTTTGATGCTCTTTCTGTAAACTCCGGATAAAAGCTTGAAGGATAGAATGTACAGGTGATTTGTGGAGTTCGGCAACTCTTGATGCACTTGGCCCTCTCCCTCTCTGCTTTCAAGAAGAGGGTAAAAATGATTCTTCACCCTGAAGTAATGTTGCAGGCTCGGAGGAGAAGAGGGTTCAGCTCT-GCAGTTTCAGTAGGAGACATTTGCTAGACTTGAAAACTTTCTAAGTGAAAACTGTAATAACTAAATGTTCTTGTGCATTAACAATTACTCTGTTATGTTTCCCTGAAATTGTTTACAAAGTTATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427538" ref_strand="+" ref_description="SGN-E427538 [STM-48-L15]">
      <seq>ttacagttttcacttagaaagttttcaagtctagcaaatgtctcctactgaaactgcagagctaaaccctcttctcctccgagcctgcaacattacttcagggtgaagaatcctttttaccctcttcttgaaagcagagagggagagggccaagtgcatcaagagttgccgaactccacaaatcacctgtacattctatccttcaagcttttatccagagtttacagaaagagcataaaaaataaagctctttgaatggaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="+" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="55982" stop="56846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56282" g_stop="56546" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="+" ref_id="SGN-E427538" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56282" e_stop="56546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGTTTTCACTTAGAAAGTTTTCAAGTATAGCAAATGTCTCCTACTGAAACGGCGAGAGCTGAACCCTCTTCTCCTCCAAGCTTGCAACATTACTTCAGGGTGAAGAATCCTTTTTACCCTCTGCGTGAAAGCAGAGAGGGAGAGGGCCAAGTGCATCAAGAGTTGCCAAACTCCACAAATCACCTGTACATTCTATCCTTCAAGCTTTTATCC-GAGTTTACAGAAAGAGCATAAAAAATAAAGCTCTTTGAATGGAAAACC</genome_strand>
        <mrna_strand>TTACAGTTTTCACTTAGAAAGTTTTCAAGTCTAGCAAATGTCTCCTACTGAAACTGC-AGAGCTAAACCCTCTTCTCCTCCGAGCCTGCAACATTACTTCAGGGTGAAGAATCCTTTTTACCCTCTTCTTGAAAGCAGAGAGGGAGAGGGCCAAGTGCATCAAGAGTTGCCGAACTCCACAAATCACCTGTACATTCTATCCTTCAAGCTTTTATCCAGAGTTTACAGAAAGAGCATAAAAAATAAAGCTCTTTGAATGGAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314183" ref_strand="+" ref_description="SGN-E314183 [cTOA-21-B10]">
      <seq>cacaatcccagccggatgctgaaattattggtgcagaggctgcaagagcggtaagcagagaaatgcctgtggaacttttacgtgctagtcttccacatacaaatgaccaccaaaagaagctgttgttgaatttcgctcagcggtctatgcctgttactggattcagttctcatggtggaagcagtggacatatagatcccgaatctgtaagctgttagctgagatggtaagatttcataatagctagtgcagttgtacatctgtaggtctcaaggttactttctggcttctctttgccagaacatgttctgcttcagcatcagtccaggagaacatagaaggctggagcaagagtatgcatatatgttaggggtctttttaaggcctaaggttcccctcttcgtcctaataactcttcccacctccaccctcacccccaccccacctcacccccatttctcccaccatccttccctgtttcttttcgttgtctcacttctttcttttgcttcattgaagggaaacatgggtttctttatccttttccttctatgtgatgggtgttatcttactttaccgtgtattatgtctgaaagaaacggggttattggtcactcttctaaggttttcattcaaagagctttattttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="57467" stop="56215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57167" g_stop="56515" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E314183" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57167" e_stop="56515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCCCAGCCGGATGCTGAAATTATTGGTGCAGAGGCTGCAAGAGCGGTAAGCAGAGAAATGCCTGTGGAACTTTTACGTGCTAGTCTTCCACATACAAATGACCACCAAAAGAAGCTGTTGTTGAATTTCGCTCAGCGGTCTATGCCTGTTACTGGATTCAGTTCTCATGGTGGAAGCAGTGGACATATAGATCCCGAATCTGTAAGCTGTTAGCTGAGATGGTAAGATTTCATAATAGCTAGTGCAGTTGTACATCTGTAGGTCTCAAGGTTACTTTCTGGCTTCTTTTTGCCAGAACATGTTCTGCTTCAGCATCAGTCCAGGAGAACATAGAAGGCTGGAGCAAGAGTATGCATATATGTTAGGGGTCTTTTTAAGGCCTAAGGTT--CCTCTTCGTCCTAATAACTCTTCCCACCTCCACCCTCACCCCCACCCCACCTCACCCCCATTTCTCCCACCATCCTTCCCTGTTTCTTTTCTTTGTCTCACTTCTTTCTTTTGCTTCATTGAAGGGAAACATGGGTTTCTTTATCCTTTTCCTTCTATGTGATGGGTGTTATCTTACTTTACCGTGTATTATGTCTGAAAGAAACGGGGTTATTGGTCACTCTTCTAAGGTTTTCCATTCAAAGAGCTTTATTTTTTATG</genome_strand>
        <mrna_strand>CACAATCCCAGCCGGATGCTGAAATTATTGGTGCAGAGGCTGCAAGAGCGGTAAGCAGAGAAATGCCTGTGGAACTTTTACGTGCTAGTCTTCCACATACAAATGACCACCAAAAGAAGCTGTTGTTGAATTTCGCTCAGCGGTCTATGCCTGTTACTGGATTCAGTTCTCATGGTGGAAGCAGTGGACATATAGATCCCGAATCTGTAAGCTGTTAGCTGAGATGGTAAGATTTCATAATAGCTAGTGCAGTTGTACATCTGTAGGTCTCAAGGTTACTTTCTGGCTTCTCTTTGCCAGAACATGTTCTGCTTCAGCATCAGTCCAGGAGAACATAGAAGGCTGGAGCAAGAGTATGCATATATGTTAGGGGTCTTTTTAAGGCCTAAGGTTCCCCTCTTCGTCCTAATAACTCTTCCCACCTCCACCCTCACCCCCACCCCACCTCACCCCCATTTCTCCCACCATCCTTCCCTGTTTCTTTTCGTTGTCTCACTTCTTTCTTTTGCTTCATTGAAGGGAAACATGGGTTTCTTTATCCTTTTCCTTCTATGTGATGGGTGTTATCTTACTTTACCGTGTATTATGTCTGAAAGAAACGGGGTTATTGGTCACTCTTCTAAGGTTTT-CATTCAAAGAGCTTTATTTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423863" ref_strand="+" ref_description="SGN-E423863 [STM-42-N21]">
      <seq>cttcaactagttgatccgcttggtaaaggtggaagttctgtcgggcttactcctaaagatgacattgtatttctatggttggtgtctcttcccaagggccggaagctcatgtcaaggtatcttcagcttcttctacctggcaatgagcttgtcagaatagtttgtatggcaattttccgccatttgaggtttttgtttggcggtcatccacctgatgtaggagcagctgagactatcactgatcttgcaaaagtagtctctaaatgtgtcactggcatggaccttaattcactcagtgcttgtcttgctgctgttgtgtgttcctcagaacaaccacctcttcgccctcttggaagctctgctggagatggagcttctattattttaaagtctgttcttgaaagggccactcatctattaactgattctcaggctgctaacagtttcagcatgcctaatcctgccctttggcaggcatcttttgatgccttttttggtttacttacaaagtattgtctgagtaagtatgacagtatcatgcaatcgattctagcacaatcccagccggatgctgaaatgattggttcagaggctgcaagagccgtaagcagagaaatgcctgggnaaacttttacgtgctagtcttccacatacaaatgaccacccaaagaagctgttgttgaattttgctcagcggtctatgcctgttaccggatttcattctcatggtggaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="58020" stop="56685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57720" g_stop="56985" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E423863" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57720" e_stop="56985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACTAGTTGATCCGCTTGGTAAAGGTGGAAGTTCTGTCGGGCTTACTCCTAAAGATGACATTGTATTTCTATGGTTGGTGTCTCTTCCCAAGGGCCGGAATCTCATGTCAAGGTATCTTCAGCTTCTTCTGCCTGGCAATGAGCTTGTCAGAATAGTTTGTATGGCAATTTTCCGCCATTTGAGGTTTTTGTTTGGCGGTCATCCACCTGATGTTGGAGCAGCTGAAACCATCACTGATCTTGCAAAAGTAGTCTCTAAATGTGTCACTCTCATGGACCTTAATTCACTGAGTGCTTGTCTTGCTGCTGTTGTGTGTTCCTCAGAACAACCACCTCTTCGCCCTCTTGGAAGCCCTGCTGGAGATGGAGCTTCTATTATTTTAAAATCTGTTCTTGAAGGGGCCACTCATCTATTAACTGATTCTAAGGCTGCTAGCAGTTTCAGCATGCCTAATCCTGCCCTTTGGCAGGCATCTTTTGATGCCTTTTTTGGTTTACTTACAAAGTATTGTCTGAGCAAGTATGACAGTATCATGCAATCGATTCTAGCACAATCCCAGCCGGATGCTGAAATTATTGGTGCAGAGGCTGCAAGAGCGGTAAGCAGAGAAATGCCTGTGG-AACTTTTACGTGCTAGTCTTCCACATACAAATGACCACCAAAAGAAGCTGTTGTTGAATTTCGCTCAGCGGTCTATGCCTGTTACTGGATTCAGTTCTCATGGTGGAAGCA</genome_strand>
        <mrna_strand>CTTCAACTAGTTGATCCGCTTGGTAAAGGTGGAAGTTCTGTCGGGCTTACTCCTAAAGATGACATTGTATTTCTATGGTTGGTGTCTCTTCCCAAGGGCCGGAAGCTCATGTCAAGGTATCTTCAGCTTCTTCTACCTGGCAATGAGCTTGTCAGAATAGTTTGTATGGCAATTTTCCGCCATTTGAGGTTTTTGTTTGGCGGTCATCCACCTGATGTAGGAGCAGCTGAGACTATCACTGATCTTGCAAAAGTAGTCTCTAAATGTGTCACTGGCATGGACCTTAATTCACTCAGTGCTTGTCTTGCTGCTGTTGTGTGTTCCTCAGAACAACCACCTCTTCGCCCTCTTGGAAGCTCTGCTGGAGATGGAGCTTCTATTATTTTAAAGTCTGTTCTTGAAAGGGCCACTCATCTATTAACTGATTCTCAGGCTGCTAACAGTTTCAGCATGCCTAATCCTGCCCTTTGGCAGGCATCTTTTGATGCCTTTTTTGGTTTACTTACAAAGTATTGTCTGAGTAAGTATGACAGTATCATGCAATCGATTCTAGCACAATCCCAGCCGGATGCTGAAATGATTGGTTCAGAGGCTGCAAGAGCCGTAAGCAGAGAAATGCCTGGGNAAACTTTTACGTGCTAGTCTTCCACATACAAATGACCACCCAAAGAAGCTGTTGTTGAATTTTGCTCAGCGGTCTATGCCTGTTACCGGATTTCATTCTCATGGTGGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699636" ref_strand="+" ref_description="SGN-E699636 [FA10DA12]">
      <seq>ccatttaaagtcttctcggtcacgtaatagtgcagaatcacagcctcatcttcatgttgatgctcaggggcgggtgtcattttcttccatccgcaggcctcgtccacttcttgaagttgatccaccaggctttgtttgcattgacagcagtgctgaccagaagatatctgagagacccttggaacaggagccaatgctggcagctagaattacaatagaagatggtttctatcttctcactgaggtagatgacattgacaggctccttcagtttagtcagccccaagactgtggtgctcagctcaagcggaagcgacagatcctgctggaaggcatggccgcctcacttcaactagttgatccgcttggtaaaggtggaagttctgtcgggcttactcctaaagatgacattgtatttctatggttggtgtctcttcccaagggccggaagctcatgtcaaggtatcttcagcttcttctgcctggcaatgagcttgtcagaatagtttgtatggcaattttccgccatttgaggtttttgtttggcggtcatccacctgatgttggagcagctgaaaccatcactgatcttgcaaaagtagtctctaaatgtgtcactctcatggaccttaattcactgagtgcttgtcttgctgctgttgtgtgttcctcagaacaaccacctcttcgccctcttggaagccctgctggagatggagcttctattattttaaatctgttcttgaaagggccactcgtctataaactgattctaaggctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="58361" stop="56983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58066" g_stop="57283" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="783" r_length="783" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E699636" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58066" e_stop="57283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGAACAGTCTTCTCGGTCACGTAATAGTGCAGAATCACAGCCTCATCTTCATGTTGATGCTCAGGGGCGGGTGTCATTTTCTTCCATCCGCAGGCCTCGTCCACTTCTTGAAGTTGATCCACCAGGCTTTGTTTGCATTGACAGCAGTGCTGACCAGAAGATATCTGAGAGACCCTTGGAACAGGAGCCAATGCTGGCAGCTAGAATTACAATAGAAGATGGTTTCTATCTTCTCACTGAGGTAGATGACATTGACAGGCTCCTTCAGTTTAGTCAGCCCCAAGACTGTGGTGCTCAGCTCAAGCGGAAGCGACAGATCCTGCTGGAAGGCATGGCCGCCTCACTTCAACTAGTTGATCCGCTTGGTAAAGGTGGAAGTTCTGTCGGGCTTACTCCTAAAGATGACATTGTATTTCTATGGTTGGTGTCTCTTCCCAAGGGCCGGAATCTCATGTCAAGGTATCTTCAGCTTCTTCTGCCTGGCAATGAGCTTGTCAGAATAGTTTGTATGGCAATTTTCCGCCATTTGAGGTTTTTGTTTGGCGGTCATCCACCTGATGTTGGAGCAGCTGAAACCATCACTGATCTTGCAAAAGTAGTCTCTAAATGTGTCACTCTCATGGACCTTAATTCACTGAGTGCTTGTCTTGCTGCTGTTGTGTGTTCCTCAGAACAACCACCTCTTCGCCCTCTTGGAAGCCCTGCTGGAGATGGAGCTTCTATTATTTTAAAATCTGTTCTTGAAGGGGCCACTCATCTATTAACTGATTCTAAGGCTGCT</genome_strand>
        <mrna_strand>CCATTTAAAGTCTTCTCGGTCACGTAATAGTGCAGAATCACAGCCTCATCTTCATGTTGATGCTCAGGGGCGGGTGTCATTTTCTTCCATCCGCAGGCCTCGTCCACTTCTTGAAGTTGATCCACCAGGCTTTGTTTGCATTGACAGCAGTGCTGACCAGAAGATATCTGAGAGACCCTTGGAACAGGAGCCAATGCTGGCAGCTAGAATTACAATAGAAGATGGTTTCTATCTTCTCACTGAGGTAGATGACATTGACAGGCTCCTTCAGTTTAGTCAGCCCCAAGACTGTGGTGCTCAGCTCAAGCGGAAGCGACAGATCCTGCTGGAAGGCATGGCCGCCTCACTTCAACTAGTTGATCCGCTTGGTAAAGGTGGAAGTTCTGTCGGGCTTACTCCTAAAGATGACATTGTATTTCTATGGTTGGTGTCTCTTCCCAAGGGCCGGAAGCTCATGTCAAGGTATCTTCAGCTTCTTCTGCCTGGCAATGAGCTTGTCAGAATAGTTTGTATGGCAATTTTCCGCCATTTGAGGTTTTTGTTTGGCGGTCATCCACCTGATGTTGGAGCAGCTGAAACCATCACTGATCTTGCAAAAGTAGTCTCTAAATGTGTCACTCTCATGGACCTTAATTCACTGAGTGCTTGTCTTGCTGCTGTTGTGTGTTCCTCAGAACAACCACCTCTTCGCCCTCTTGGAAGCCCTGCTGGAGATGGAGCTTCTATTATTTT-AAATCTGTTCTTGAAAGGGCCACTCGTCTATAAACTGATTCTAAGGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709808" ref_strand="+" ref_description="SGN-E709808 [FA53AH10]">
      <seq>cttctcactgaggtagatgacattgacaggccccttcagtttagtcagccccaagactgtggtgctcagctcaagcggaagcgacagatcctgctggaaggcatggccgcctcacttcaactagttgatccgcttggtaaaggtggaagttctgtcgggcttactcctaaagatgacattgtatttctatggttggtgtctcttcccaagggccggaagctcatgtcaaggtatcttcagcttcttctgcctggcaatgagcttgtcagaatagtttgtatggcaattttccgccatttgaggtttttgtttggcggtcatccacctgatgttggagcagctgaaaccatcactgatcttgcaaaagtagtctctaaatgtgtcactctcatggaccttaattcactgagtgcttgtcttgctgctgttgtgtgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="58134" stop="57097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57834" g_stop="57397" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E709808" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57834" e_stop="57397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCACTGAGGTAGATGACATTGACAGGCTCCTTCAGTTTAGTCAGCCCCAAGACTGTGGTGCTCAGCTCAAGCGGAAGCGACAGATCCTGCTGGAAGGCATGGCCGCCTCACTTCAACTAGTTGATCCGCTTGGTAAAGGTGGAAGTTCTGTCGGGCTTACTCCTAAAGATGACATTGTATTTCTATGGTTGGTGTCTCTTCCCAAGGGCCGGAATCTCATGTCAAGGTATCTTCAGCTTCTTCTGCCTGGCAATGAGCTTGTCAGAATAGTTTGTATGGCAATTTTCCGCCATTTGAGGTTTTTGTTTGGCGGTCATCCACCTGATGTTGGAGCAGCTGAAACCATCACTGATCTTGCAAAAGTAGTCTCTAAATGTGTCACTCTCATGGACCTTAATTCACTGAGTGCTTGTCTTGCTGCTGTTGTGTGTTCC</genome_strand>
        <mrna_strand>CTTCTCACTGAGGTAGATGACATTGACAGGCCCCTTCAGTTTAGTCAGCCCCAAGACTGTGGTGCTCAGCTCAAGCGGAAGCGACAGATCCTGCTGGAAGGCATGGCCGCCTCACTTCAACTAGTTGATCCGCTTGGTAAAGGTGGAAGTTCTGTCGGGCTTACTCCTAAAGATGACATTGTATTTCTATGGTTGGTGTCTCTTCCCAAGGGCCGGAAGCTCATGTCAAGGTATCTTCAGCTTCTTCTGCCTGGCAATGAGCTTGTCAGAATAGTTTGTATGGCAATTTTCCGCCATTTGAGGTTTTTGTTTGGCGGTCATCCACCTGATGTTGGAGCAGCTGAAACCATCACTGATCTTGCAAAAGTAGTCTCTAAATGTGTCACTCTCATGGACCTTAATTCACTGAGTGCTTGTCTTGCTGCTGTTGTGTGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699820" ref_strand="+" ref_description="SGN-E699820 [FA11BC02]">
      <seq>ccctttagcagagacttcatctttcagttcagccttctttagctctttttttcagcgctaagatcccaattgtataattccttcccttcaccatctcatctaggtaagtatggattggctcatttcagagattcacgatctaagccatcacacaaggttagacaaaatgtgcgcttttctaaacaaggctctgatgctgcttgccacaaaagtgaaagtaatgtgccacagttccgatctaagtatatgaccggtgatgaaatagagagcatcctgaaaatgcagcattctgcagcacatggcaatgatccatatgtagatgactactatcaccaggcccgccttgcaaagaaagcagctgagtctaggtcaaaatatcgcttttgtccaaataaggaacagtcttctcggtcacgtaatagtgcacaatcacagcctcatcttcatgttgatgctcaggggcgggtgtcactttcttccatccgcaggcctcgtccacttcttgaaattgatccaccaggctttgtttgcattgacaccaatgctgaccagaagatatctgagagacccttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="58751" stop="57585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58457" g_stop="57885" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E699820" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58457" e_stop="57885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAACAGCAGAGACTTCATCTTTCAGTTCAGCCTTCTTTAGCTCATTTT-TCAGCGCTAAGATCCCAATTGTATAATTCCTTCCCTTCACCATCTCATCTAGGTAAGTATGGATTGGCAGATTTCAGAGATTCACGATCTAAGCCATCACAGAAGGTTAGACAAAATGTGCGTTTTTCTAAACAAGGCTCTGATGCTGCTTGCCACAAAAGTGAAAGTAATGTGCCACAGTTCCGATCTAAGTATATGACTGGTGATGAAATAGAGAGCATCCTGAAAATGCAGCATTCTGCAGCACATGGCAATGATCCATATGTAGATGACTACTATCACCAGGCCCGCCTTGCAAAGAAAGCAGCTGAGTCTAGGTCAAAATATCGCTTTTGTCCAAATAAGGAACAGTCTTCTCGGTCACGTAATAGTGCAGAATCACAGCCTCATCTTCATGTTGATGCTCAGGGGCGGGTGTCATTTTCTTCCATCCGCAGGCCTCGTCCACTTCTTGAAGTTGATCCACCAGGCTTTGTTTGCATTGACAGCAGTGCTGACCAGAAGATATCTGAGAGACCCTTGG</genome_strand>
        <mrna_strand>CCCTTTAGCAGAGACTTCATCTTTCAGTTCAGCCTTCTTTAGCTCTTTTTTTCAGCGCTAAGATCCCAATTGTATAATTCCTTCCCTTCACCATCTCATCTAGGTAAGTATGGATTGGCTCATTTCAGAGATTCACGATCTAAGCCATCACACAAGGTTAGACAAAATGTGCGCTTTTCTAAACAAGGCTCTGATGCTGCTTGCCACAAAAGTGAAAGTAATGTGCCACAGTTCCGATCTAAGTATATGACCGGTGATGAAATAGAGAGCATCCTGAAAATGCAGCATTCTGCAGCACATGGCAATGATCCATATGTAGATGACTACTATCACCAGGCCCGCCTTGCAAAGAAAGCAGCTGAGTCTAGGTCAAAATATCGCTTTTGTCCAAATAAGGAACAGTCTTCTCGGTCACGTAATAGTGCACAATCACAGCCTCATCTTCATGTTGATGCTCAGGGGCGGGTGTCACTTTCTTCCATCCGCAGGCCTCGTCCACTTCTTGAAATTGATCCACCAGGCTTTGTTTGCATTGACACCAATGCTGACCAGAAGATATCTGAGAGACCCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481149" ref_strand="+" ref_description="SGN-E481149 [cSTD-16-F10]">
      <seq>atctcatctaggcaagtatggattggcagatttcagagattcacgatctaagccatcacacaaggttagacaaaatgtgcgcttttctaaacaaggctctgatgctgctagccacaaaagtgaaagtaatgtgccacagttccgatctaagtatatgactggtgatgaaatagagagcatcctgaaaatgcagcattctgcagcacatggcaatgatccatatgtagatgactactatcaccaggcccgccttgcaaagaaagcagccgagtcgaggtcaaaacatcgcttctgtccaaataaggaacagtcttctcgggcacgtaatagtgcaaaatcacagcctcatcttcatgttgatgctcaagggcgggtggcattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="58666" stop="57682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58366" g_stop="57982" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E481149" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58366" e_stop="57982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATCTAGGTAAGTATGGATTGGCAGATTTCAGAGATTCACGATCTAAGCCATCACAGAAGGTTAGACAAAATGTGCGTTTTTCTAAACAAGGCTCTGATGCTGCTTGCCACAAAAGTGAAAGTAATGTGCCACAGTTCCGATCTAAGTATATGACTGGTGATGAAATAGAGAGCATCCTGAAAATGCAGCATTCTGCAGCACATGGCAATGATCCATATGTAGATGACTACTATCACCAGGCCCGCCTTGCAAAGAAAGCAGCTGAGTCTAGGTCAAAATATCGCTTTTGTCCAAATAAGGAACAGTCTTCTCGGTCACGTAATAGTGCAGAATCACAGCCTCATCTTCATGTTGATGCTCAGGGGCGGGTGTCATTTTCT</genome_strand>
        <mrna_strand>ATCTCATCTAGGCAAGTATGGATTGGCAGATTTCAGAGATTCACGATCTAAGCCATCACACAAGGTTAGACAAAATGTGCGCTTTTCTAAACAAGGCTCTGATGCTGCTAGCCACAAAAGTGAAAGTAATGTGCCACAGTTCCGATCTAAGTATATGACTGGTGATGAAATAGAGAGCATCCTGAAAATGCAGCATTCTGCAGCACATGGCAATGATCCATATGTAGATGACTACTATCACCAGGCCCGCCTTGCAAAGAAAGCAGCCGAGTCGAGGTCAAAACATCGCTTCTGTCCAAATAAGGAACAGTCTTCTCGGGCACGTAATAGTGCAAAATCACAGCCTCATCTTCATGTTGATGCTCAAGGGCGGGTGGCATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738800" ref_strand="+" ref_description="SGN-E738800 [LC15AA08]">
      <seq>cttctccaccccacacaccaacacaaacacgtagactatgtaatacgctatgtctccttctccttttcgtctctttctttgaaaaccctagaaatctcaggtttttaaggaaaagaggactttgattcggtgcaattttatccttttctcctttttttgtcggtgtacatatggggttatatttcgcgggatccccaattttctaagaaaaaattggttgttagaagttggtgctatggagagatccaatagcagagatttcaaagacttgactagctcctctggctccatctcagatggtgccctctttgatgcatcacaatatgcattttttgggcgagatatagcggaggaagttgaattgggtggtttagaggacggacaagacaatagtgatctgggtgttggaggtggattaggtgatgacgagatacaggagtatcatttatttgagaaagacgagggatctgtggtgggctcattatcggacatagatgatctagcaacgacattttcaaagttgaacagaaatgtcactggaccaaggcatcctggtgttattggtgaccgtggatcaggctctttttcaagggaaagttcatctgcagctgattgggcgaaagaagcagactttcatgattggtttgatcagcatttatctgacactgaatgttaccaggaaagcaaaaaatggtcttcacagccacatatctctgcagtgcttgcagagtcaaaaccattgtatagaacatcctcataccccgagcaacccccacaacctcaacaacttcagcactactctagtgaaccccttttaccaccgaaatcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="64410" stop="58515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64110" g_stop="63815" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63814" i_stop="62400" i_length="1415">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62399" g_stop="62233" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="463" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62232" i_stop="60982" i_length="1251">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60981" g_stop="60925" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="520" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60924" i_stop="60658" i_length="267">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60657" g_stop="60582" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="596" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60581" i_stop="59052" i_length="1530">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59051" g_stop="58815" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="833" r_length="237" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E738800" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64110" e_stop="63815"/>
          <exon e_start="62399" e_stop="62233"/>
          <exon e_start="60981" e_stop="60925"/>
          <exon e_start="60657" e_stop="60582"/>
          <exon e_start="59051" e_stop="58815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCCACCCCACACACCAACACAAACACGTAGACTATGTAATACGCTATGTCTCCTTCTCCTTTTCGTCTCTTTCTTTGAAAACCCTAGAAATCTCAGGTTTTTAAGGAAAAGAGGACTTTGATTCGGTGCAATTTTATCCCTTTCTCCTTTTTTTGTCGGTGTACATATGGGGTTATATTTCGCGGGATCCCCAATTTTCTAAGAAAAAATTGGTTGTTAGAAGTTGGTGCTATGGAGAGATCCAATAGCAGAGATTTCAAAGACTTGACTAGCTCCTCTGGCTCCATCTCAGGTAGCGTAGCTCACTGTTTTTTTTTTTTGTTCGTTCTTGAATCTTCAGATCGTTTTTTTTTTCTTTTTTTGGGTTGTGGTGTGGTGTGGGTAAAATTTGCTCTGATGTGATGCAATTTAATTACGAGTGTTCGGATGGAATGGGTTCAAATGAAGCTAGTTAGGGTGGATTTATATAGCTGACCTGAACTAGTTGGAGATTGAGATGTGAGGATTTCACTTTCTGTTTTGTTGCTTTAAAATTTGGTTTGATTCGTTGTTTTACTTTAGTTATCACTATTGGGATCAAATGGATGACAGGCCGTTATGTGGCTGACCCTAGTAGTTTAGGATTGAGGTGTAACAATTTGTATGTTTTTTTTTGGTGGTGGACGTTGGGGTTGGGGTTGGGAATGGAGGTTCGGGAGTTCAAATGTGCTTTCATTCAGTGGAATGAGATTTAAGAAATTCATGTAATTGTATCCTTACTAGTTTGGCAGTGAGTTATAGGCACTATTGTCAAAGGTAAGCCCTCGAGCGAAGCTCAAAACTTGTTGAGCATTTTGCCTGGATTAATGTGCTCTTTAGTGTCTTATCAAGGTTCTAAGGCACTCTGTCCCTTTCCAATGAGCCATTTCAGTCGGAAAAGGCGACAATAAATAATTGATTTATCACTTTATTGTAATTTTTTTTTAGTTTCTTTGTTTGTGTATATTATGTCAGCCATGCTTATAATTATTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTATTTAGGTGTTTGGCAATACTCAAAATAACTTATTTTAAGTTAAAAATAAAATCAAAAGTTAAAAGCTGGGGTAGGGGTGTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGCTCTTAATATTTTTACACAATTTCCAAATTACCCATGTAACTCTAACATTTCTTTCTTCCATTTTTCCCTTTTCATGTTTGACATAACAACTTCAGCACTTTTATCCAAACGCATAACTACTTATTTTAAAAATAAGTTTCAGCACTTTTAAAATTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAGTCTTGGACTATACATATTTATTTGTTTTTTCTTTCCTCCCTTTGCTCCATTTTTCATTGAGGCGCATGCTTTATTTGCGCTTAAAGTCCCAATGGACGTTAGAGCTATTTTGCTTTCGATAAACACTGGTTGTAGCAGTACTTGCTGTTGCTCTTCTCAATACCTTACTTTACATTCTATTTTTTTTAATTTTCCTTGTTCTACATGTTGTCATTAGTATGGGAAAAGAATATCAAGATTTGAATGTTTTAACTGTGTAAAGTATGTGTTAGACTTGACTGCTTATTTGGGCTTTGATGCAGATGGTGCCCTCTTTGATGCATCACAATATGCATTTTTTGGGCGAGATATAGCGGAGGAAGTTGAATTGGGTGGTTTAGAGGACGGACAAGACAATAGTGATCTGGGTGTTGGAGGTGGATTAGGTGATGACGAGATACAGGAGTATCATTTATTTGAGAAAGACGAGGTATAATCTGCTTATCCTTCCTGTGGACCTGACATAAAATAGTGCTGAGGCTTGGAATTTCGTTAACAGGGTTGTAATCAACATGATCTCTTGTTGCGACTGAACGAATGAGGACCTGTTTAACTCACAATAAGTGGGGAAATCCATCATAACATATGGAGATTATTTTCATGCCGTAGGCCATGAATTTGGGGAAATTCGTTAAAAGTTATTGTGCATTTGAGACATATTTATTCAAATGATCTAGGTTTTGCTAAGCGTTTTACTATTGATCCTTGTTTTCAGTTCACGTGTGTCTAGTCAGCACTATAGTTTCAGTCTTATACGAAATGACCTAGAGTATTTTTTTTGCAACAGAGTCATCAAATAGAAAGGATGTTTTATAGTTCTGCTGCACTTTGATCCGTTCTTTTCTTGCTTTCTCACCTTAGTACCCTAAAATGCTCCCCCTTTTCTAATTTTAAAAGTCATCCCCCCCCCCCCGCCTCCCCCTCTACTCTACAACGATGAGACTGCCTCGGTTCTGCAGCTCACCATAAGTCTAAGTGGTCACTGGGATTTTGACAATGGTGTTATCCAGGCAATGATCTAATTTAACTTAAGATGTGATCCCTTATTATGAGTAATCTTCAAAATGCTATAGCTGCCACGAGAGTGTATGGCCTATTCATGAAAAAGATGCGAGGCTTCTTCAGTGATTTATTCCTTTGTTAAGTACTGTCCTTGAATAAAATGTTAAAATTTGTGGAGACTCGAGAATTTGTGAATCTCAGCACCATCAAATAGACCTTAGACATTAGCTTTCTCTCTTCAAAACTATGTGCTCCACTTTCTGTTATTCTGTATAAATGGTTTGTCACGGCTGGTAACCTTTAGGGGTCATTTGGTTGGAAACAAGTTATCCCAGCATAAGTTATCCTGGGATAACTTATCCCACCATGTATGTGGGATAACTTATTCCATCACTATGATATAAATGGTGGGATAAGTTATCCCAAACATGGCAACCAAACAAGATAATTTTTTTTATCCCTTCACTATTTCCTTATTCCATCACTATTTTTTTAATAGCTCACACCAACGAGCCCTTAAAGTTTCTTGCATTTATTCTATGAGTGATCTTCAAGCATTTTTTGTTGTGGACTTTTCCCCGATGTTGTAAGTATGCTATATTTGCTGATTACCTCGATAAGTTGCTGGCTTTGGCACTATTTGCTATTTAGTGCCTCTAATTCAGTGCTTTATTTCCAGGGATCTGTGGTGGGCTCATTATCGGACATAGATGATCTAGCAACGACATTTTCAAAGGTCAGCTGATGCAACATCTTTATTACCTGATGTTCTGAGCCATTTGACTTGGACTTACTATTCGTGTACCTTCCAATTAGCACGAGTCTTTTTCTTTTTCCCGTATTTTTCTGTGAGACACAGTATGTCTTGAACTTTATTTCGTACTATTGTTGAGTAAAAACATCTAAAGCACTAAACCATGCTTGACTTTTTACATCCTCTATAGAGCTGTGGATATCTACTTGTACTAGATCAATCTGAATGCTTTTCTTTCCTTTTCTCCAGTTGAACAGAAATGTCACTGGACCAAGGCATCCTGGTGTTATTGGTGACCGTGGATCAGGCTCTTTTTCAAGGGAAAGTAAGTGCACATATTGATTAATTTTTTGTCCTTCCGTGATGTTTTTTCTTGAATATTTGATAAATCTCCTGGACTAGTTCCTGTATTGTCTGAAATATACCTTACTTGTTAACTTGCTTGAGGCTACTTTAAGATTGAAATGATGCCCCTTCATTGTTTTATCCGCCCATGCACATTTGTGCCACTAGTCCCAGATTTGTGAATATCTGTGATATCATATGTAGGCACCTTAAAATTCAGACAGTTGTGGCAATAATCCTTGATATTTTGATCTTTCAGACATCATATGAAGGGACTTGATCTCAGACCTTGGTAGGAATAAGTTATAGCCTTGTAGATGATCTGTTTCATCTTCGTGCTTGATTATTAAGGTCAGCAATGGTCCTCCCTTTGGGAGACTGACTATCTATATGTGCATGGTAGATGCCTTAATCAGTCTTGGCCTTTTTTTTTTTGGTTCTGAAAATCAGCGATCCTTTTTCCTTGCTACTACCATTAAAAAATGATTTGGCCCCGTGGTAGTAATACTTCAATAAAACTTCACCTTTCTGGATGATTTGTGATGGAAATCTATCCTGGCATGTGGCCTTGGGCTGCTAGAGTGGGGAGCTTGAGAAACTTCATGGAATGATTTTTTATTTTTGGATAATGAACTTCATGAAATGATTTATAAGCTTAGGACAACCCCCCACCCCTCTTAAAAAATAGTCATAAAAGGTTACATCACACAACACACAGAAATAAAACAGAAAGGTGGTTTTCTTATATGGTGACATGTAGAGTATTTTAAGTACATAGGTTTTAGCCATATCTATTTTGTTGTTTGTTGAAATGAGATCAACTTATCAGAAGTTTTTCCCTGTTGTAATTTTTCTGTTTTTAGCACGTGTTTTCCTTTTCGCATCTCCTGCCACTTGCTGGATCTGCCCCTATATTGGTTTGACGAGCATGTTTTCGTGTGGCACACTTTTGTACCCTCGTTCCATCTCGTGCCTCCTTTTAGGCACACTTAGTTTGTTGATTACTTACTTATGCGATATTCTGTATCTATGAGGTGAACACATTCTTTCAATAAAATGTCATCTGGATTGTTGGTTACCAGTTCTCAATCTCATGTTGCAGTATTATTACTATGTTACACAAGATGTGCTTTTAGAGATGTCTTTAGGGGAACAGACATGTTCACGCCAAAAAAGGGTCCATGTTACATGAATTATTAGTTTTAGGAGAGTAGAAGTTTAATGTCTAATTTTCATTGGAGTCCTCTCTGAATTAGTTCAATTTGACAAACATGAATGTGAGTTTCTTTTATTTGCCTTTATGTTGATATATTATGTTGGACTCAAATATTCTCCCTCCGTTCCATTTCACATGACATTTATCTTTTTTGGCTAGTAATGAAGATTTACATGTTTCTGTATTTGAAAATTCTTTGATCCTAACATTTTTATTTTGCTCTTAATGACATGCTCTAGTTAGGATGAAATGGCATGTTGAAAATAACTACTAATATATACTTGGTATTTGCAGGTTCATCTGCAGCTGATTGGGCGAAAGAAGCAGACTTTCATGATTGGTTTGATCAGCATTTATCTGACACTGAATGTTACCAGGAAAGCAAAAAATGGTCTTCACAGCCACATATCTCTGCAGTGCTTGCAGAGTCAAAACCATTGTATAGAACATCCTCATACCCCGAGCAACCCCCACAACCTCAACAACTTCAGCACTACTCTAGTGAACCCATTTTACTACCGAAATCATCTT</genome_strand>
        <mrna_strand>CTTCTCCACCCCACACACCAACACAAACACGTAGACTATGTAATACGCTATGTCTCCTTCTCCTTTTCGTCTCTTTCTTTGAAAACCCTAGAAATCTCAGGTTTTTAAGGAAAAGAGGACTTTGATTCGGTGCAATTTTATCCTTTTCTCCTTTTTTTGTCGGTGTACATATGGGGTTATATTTCGCGGGATCCCCAATTTTCTAAGAAAAAATTGGTTGTTAGAAGTTGGTGCTATGGAGAGATCCAATAGCAGAGATTTCAAAGACTTGACTAGCTCCTCTGGCTCCATCTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCCCTCTTTGATGCATCACAATATGCATTTTTTGGGCGAGATATAGCGGAGGAAGTTGAATTGGGTGGTTTAGAGGACGGACAAGACAATAGTGATCTGGGTGTTGGAGGTGGATTAGGTGATGACGAGATACAGGAGTATCATTTATTTGAGAAAGACGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTGTGGTGGGCTCATTATCGGACATAGATGATCTAGCAACGACATTTTCAAAG...........................................................................................................................................................................................................................................................................TTGAACAGAAATGTCACTGGACCAAGGCATCCTGGTGTTATTGGTGACCGTGGATCAGGCTCTTTTTCAAGGGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTGCAGCTGATTGGGCGAAAGAAGCAGACTTTCATGATTGGTTTGATCAGCATTTATCTGACACTGAATGTTACCAGGAAAGCAAAAAATGGTCTTCACAGCCACATATCTCTGCAGTGCTTGCAGAGTCAAAACCATTGTATAGAACATCCTCATACCCCGAGCAACCCCCACAACCTCAACAACTTCAGCACTACTCTAGTGAACCCCTTTTACCACCGAAATCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736542" ref_strand="+" ref_description="SGN-E736542 [LC06AF09]">
      <seq>cgccttaccaacacaaacacgtagactatgtaatacgctatgtctctttctccttttcgtctctttctttgaaaaccctagaaatctcaggtttttaaggaaaagaggactttgattctgtgcaattttatccttttctcctttttttgtcgagtgtacatatggggttatatttcgcgggatccccaattttctaagaaaaaattggttgttagaagttggtgctatggagagatccaatagcagagatttcaaagacttgactagctcctctggctccatctcagatggtgccctctttgatgcatcacaatatgcattttttgggcgagatatagcggaggaagttgaattgggtggtttagaggacggacaagacaatagtgatctgggtgttggaggtggattaggtgatgacgagatacaggagtatcatttatttgagaaagacgagggatctgtggtgggctcattatcagacatagatgatctagcaacgacattttcaaagttgaacagaaatgtcactggaccaaggcatcctggtgttattggtgaccgtggatcaggctctttttcaagggaaagttcatctgcagctgattgggcgaaagaagcagactttcatgattggtttgatcagcatttatctgacactgaatgttaccaggaaagcaaaaaatggtcttcacagccacatatctctgcagtgcttgcagagtcaaaaccattgtatagaacatcctcataccccgagcaaccccccacaccctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="64401" stop="58565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64100" g_stop="63815" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63814" i_stop="62400" i_length="1415">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62399" g_stop="62233" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="454" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62232" i_stop="60982" i_length="1251">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60981" g_stop="60925" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="511" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60924" i_stop="60658" i_length="267">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60657" g_stop="60582" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="587" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60581" i_stop="59052" i_length="1530">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59051" g_stop="58865" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="775" r_length="188" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E736542" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64100" e_stop="63815"/>
          <exon e_start="62399" e_stop="62233"/>
          <exon e_start="60981" e_stop="60925"/>
          <exon e_start="60657" e_stop="60582"/>
          <exon e_start="59051" e_stop="58865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACACCAACACAAACACGTAGACTATGTAATACGCTATGTCTCCTTCTCCTTTTCGTCTCTTTCTTTGAAAACCCTAGAAATCTCAGGTTTTTAAGGAAAAGAGGACTTTGATTCGGTGCAATTTTATCCCTTTCTCCTTTTTTTGTCG-GTGTACATATGGGGTTATATTTCGCGGGATCCCCAATTTTCTAAGAAAAAATTGGTTGTTAGAAGTTGGTGCTATGGAGAGATCCAATAGCAGAGATTTCAAAGACTTGACTAGCTCCTCTGGCTCCATCTCAGGTAGCGTAGCTCACTGTTTTTTTTTTTTGTTCGTTCTTGAATCTTCAGATCGTTTTTTTTTTCTTTTTTTGGGTTGTGGTGTGGTGTGGGTAAAATTTGCTCTGATGTGATGCAATTTAATTACGAGTGTTCGGATGGAATGGGTTCAAATGAAGCTAGTTAGGGTGGATTTATATAGCTGACCTGAACTAGTTGGAGATTGAGATGTGAGGATTTCACTTTCTGTTTTGTTGCTTTAAAATTTGGTTTGATTCGTTGTTTTACTTTAGTTATCACTATTGGGATCAAATGGATGACAGGCCGTTATGTGGCTGACCCTAGTAGTTTAGGATTGAGGTGTAACAATTTGTATGTTTTTTTTTGGTGGTGGACGTTGGGGTTGGGGTTGGGAATGGAGGTTCGGGAGTTCAAATGTGCTTTCATTCAGTGGAATGAGATTTAAGAAATTCATGTAATTGTATCCTTACTAGTTTGGCAGTGAGTTATAGGCACTATTGTCAAAGGTAAGCCCTCGAGCGAAGCTCAAAACTTGTTGAGCATTTTGCCTGGATTAATGTGCTCTTTAGTGTCTTATCAAGGTTCTAAGGCACTCTGTCCCTTTCCAATGAGCCATTTCAGTCGGAAAAGGCGACAATAAATAATTGATTTATCACTTTATTGTAATTTTTTTTTAGTTTCTTTGTTTGTGTATATTATGTCAGCCATGCTTATAATTATTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTATTTAGGTGTTTGGCAATACTCAAAATAACTTATTTTAAGTTAAAAATAAAATCAAAAGTTAAAAGCTGGGGTAGGGGTGTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGCTCTTAATATTTTTACACAATTTCCAAATTACCCATGTAACTCTAACATTTCTTTCTTCCATTTTTCCCTTTTCATGTTTGACATAACAACTTCAGCACTTTTATCCAAACGCATAACTACTTATTTTAAAAATAAGTTTCAGCACTTTTAAAATTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAGTCTTGGACTATACATATTTATTTGTTTTTTCTTTCCTCCCTTTGCTCCATTTTTCATTGAGGCGCATGCTTTATTTGCGCTTAAAGTCCCAATGGACGTTAGAGCTATTTTGCTTTCGATAAACACTGGTTGTAGCAGTACTTGCTGTTGCTCTTCTCAATACCTTACTTTACATTCTATTTTTTTTAATTTTCCTTGTTCTACATGTTGTCATTAGTATGGGAAAAGAATATCAAGATTTGAATGTTTTAACTGTGTAAAGTATGTGTTAGACTTGACTGCTTATTTGGGCTTTGATGCAGATGGTGCCCTCTTTGATGCATCACAATATGCATTTTTTGGGCGAGATATAGCGGAGGAAGTTGAATTGGGTGGTTTAGAGGACGGACAAGACAATAGTGATCTGGGTGTTGGAGGTGGATTAGGTGATGACGAGATACAGGAGTATCATTTATTTGAGAAAGACGAGGTATAATCTGCTTATCCTTCCTGTGGACCTGACATAAAATAGTGCTGAGGCTTGGAATTTCGTTAACAGGGTTGTAATCAACATGATCTCTTGTTGCGACTGAACGAATGAGGACCTGTTTAACTCACAATAAGTGGGGAAATCCATCATAACATATGGAGATTATTTTCATGCCGTAGGCCATGAATTTGGGGAAATTCGTTAAAAGTTATTGTGCATTTGAGACATATTTATTCAAATGATCTAGGTTTTGCTAAGCGTTTTACTATTGATCCTTGTTTTCAGTTCACGTGTGTCTAGTCAGCACTATAGTTTCAGTCTTATACGAAATGACCTAGAGTATTTTTTTTGCAACAGAGTCATCAAATAGAAAGGATGTTTTATAGTTCTGCTGCACTTTGATCCGTTCTTTTCTTGCTTTCTCACCTTAGTACCCTAAAATGCTCCCCCTTTTCTAATTTTAAAAGTCATCCCCCCCCCCCCGCCTCCCCCTCTACTCTACAACGATGAGACTGCCTCGGTTCTGCAGCTCACCATAAGTCTAAGTGGTCACTGGGATTTTGACAATGGTGTTATCCAGGCAATGATCTAATTTAACTTAAGATGTGATCCCTTATTATGAGTAATCTTCAAAATGCTATAGCTGCCACGAGAGTGTATGGCCTATTCATGAAAAAGATGCGAGGCTTCTTCAGTGATTTATTCCTTTGTTAAGTACTGTCCTTGAATAAAATGTTAAAATTTGTGGAGACTCGAGAATTTGTGAATCTCAGCACCATCAAATAGACCTTAGACATTAGCTTTCTCTCTTCAAAACTATGTGCTCCACTTTCTGTTATTCTGTATAAATGGTTTGTCACGGCTGGTAACCTTTAGGGGTCATTTGGTTGGAAACAAGTTATCCCAGCATAAGTTATCCTGGGATAACTTATCCCACCATGTATGTGGGATAACTTATTCCATCACTATGATATAAATGGTGGGATAAGTTATCCCAAACATGGCAACCAAACAAGATAATTTTTTTTATCCCTTCACTATTTCCTTATTCCATCACTATTTTTTTAATAGCTCACACCAACGAGCCCTTAAAGTTTCTTGCATTTATTCTATGAGTGATCTTCAAGCATTTTTTGTTGTGGACTTTTCCCCGATGTTGTAAGTATGCTATATTTGCTGATTACCTCGATAAGTTGCTGGCTTTGGCACTATTTGCTATTTAGTGCCTCTAATTCAGTGCTTTATTTCCAGGGATCTGTGGTGGGCTCATTATCGGACATAGATGATCTAGCAACGACATTTTCAAAGGTCAGCTGATGCAACATCTTTATTACCTGATGTTCTGAGCCATTTGACTTGGACTTACTATTCGTGTACCTTCCAATTAGCACGAGTCTTTTTCTTTTTCCCGTATTTTTCTGTGAGACACAGTATGTCTTGAACTTTATTTCGTACTATTGTTGAGTAAAAACATCTAAAGCACTAAACCATGCTTGACTTTTTACATCCTCTATAGAGCTGTGGATATCTACTTGTACTAGATCAATCTGAATGCTTTTCTTTCCTTTTCTCCAGTTGAACAGAAATGTCACTGGACCAAGGCATCCTGGTGTTATTGGTGACCGTGGATCAGGCTCTTTTTCAAGGGAAAGTAAGTGCACATATTGATTAATTTTTTGTCCTTCCGTGATGTTTTTTCTTGAATATTTGATAAATCTCCTGGACTAGTTCCTGTATTGTCTGAAATATACCTTACTTGTTAACTTGCTTGAGGCTACTTTAAGATTGAAATGATGCCCCTTCATTGTTTTATCCGCCCATGCACATTTGTGCCACTAGTCCCAGATTTGTGAATATCTGTGATATCATATGTAGGCACCTTAAAATTCAGACAGTTGTGGCAATAATCCTTGATATTTTGATCTTTCAGACATCATATGAAGGGACTTGATCTCAGACCTTGGTAGGAATAAGTTATAGCCTTGTAGATGATCTGTTTCATCTTCGTGCTTGATTATTAAGGTCAGCAATGGTCCTCCCTTTGGGAGACTGACTATCTATATGTGCATGGTAGATGCCTTAATCAGTCTTGGCCTTTTTTTTTTTGGTTCTGAAAATCAGCGATCCTTTTTCCTTGCTACTACCATTAAAAAATGATTTGGCCCCGTGGTAGTAATACTTCAATAAAACTTCACCTTTCTGGATGATTTGTGATGGAAATCTATCCTGGCATGTGGCCTTGGGCTGCTAGAGTGGGGAGCTTGAGAAACTTCATGGAATGATTTTTTATTTTTGGATAATGAACTTCATGAAATGATTTATAAGCTTAGGACAACCCCCCACCCCTCTTAAAAAATAGTCATAAAAGGTTACATCACACAACACACAGAAATAAAACAGAAAGGTGGTTTTCTTATATGGTGACATGTAGAGTATTTTAAGTACATAGGTTTTAGCCATATCTATTTTGTTGTTTGTTGAAATGAGATCAACTTATCAGAAGTTTTTCCCTGTTGTAATTTTTCTGTTTTTAGCACGTGTTTTCCTTTTCGCATCTCCTGCCACTTGCTGGATCTGCCCCTATATTGGTTTGACGAGCATGTTTTCGTGTGGCACACTTTTGTACCCTCGTTCCATCTCGTGCCTCCTTTTAGGCACACTTAGTTTGTTGATTACTTACTTATGCGATATTCTGTATCTATGAGGTGAACACATTCTTTCAATAAAATGTCATCTGGATTGTTGGTTACCAGTTCTCAATCTCATGTTGCAGTATTATTACTATGTTACACAAGATGTGCTTTTAGAGATGTCTTTAGGGGAACAGACATGTTCACGCCAAAAAAGGGTCCATGTTACATGAATTATTAGTTTTAGGAGAGTAGAAGTTTAATGTCTAATTTTCATTGGAGTCCTCTCTGAATTAGTTCAATTTGACAAACATGAATGTGAGTTTCTTTTATTTGCCTTTATGTTGATATATTATGTTGGACTCAAATATTCTCCCTCCGTTCCATTTCACATGACATTTATCTTTTTTGGCTAGTAATGAAGATTTACATGTTTCTGTATTTGAAAATTCTTTGATCCTAACATTTTTATTTTGCTCTTAATGACATGCTCTAGTTAGGATGAAATGGCATGTTGAAAATAACTACTAATATATACTTGGTATTTGCAGGTTCATCTGCAGCTGATTGGGCGAAAGAAGCAGACTTTCATGATTGGTTTGATCAGCATTTATCTGACACTGAATGTTACCAGGAAAGCAAAAAATGGTCTTCACAGCCACATATCTCTGCAGTGCTTGCAGAGTCAAAACCATTGTATAGAACATCCTCATACCCCGAGCAA-CCCCCACAACCTCA</genome_strand>
        <mrna_strand>CGCCTTACCAACACAAACACGTAGACTATGTAATACGCTATGTCTCTTTCTCCTTTTCGTCTCTTTCTTTGAAAACCCTAGAAATCTCAGGTTTTTAAGGAAAAGAGGACTTTGATTCTGTGCAATTTTATCCTTTTCTCCTTTTTTTGTCGAGTGTACATATGGGGTTATATTTCGCGGGATCCCCAATTTTCTAAGAAAAAATTGGTTGTTAGAAGTTGGTGCTATGGAGAGATCCAATAGCAGAGATTTCAAAGACTTGACTAGCTCCTCTGGCTCCATCTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCCCTCTTTGATGCATCACAATATGCATTTTTTGGGCGAGATATAGCGGAGGAAGTTGAATTGGGTGGTTTAGAGGACGGACAAGACAATAGTGATCTGGGTGTTGGAGGTGGATTAGGTGATGACGAGATACAGGAGTATCATTTATTTGAGAAAGACGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTGTGGTGGGCTCATTATCAGACATAGATGATCTAGCAACGACATTTTCAAAG...........................................................................................................................................................................................................................................................................TTGAACAGAAATGTCACTGGACCAAGGCATCCTGGTGTTATTGGTGACCGTGGATCAGGCTCTTTTTCAAGGGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTGCAGCTGATTGGGCGAAAGAAGCAGACTTTCATGATTGGTTTGATCAGCATTTATCTGACACTGAATGTTACCAGGAAAGCAAAAAATGGTCTTCACAGCCACATATCTCTGCAGTGCTTGCAGAGTCAAAACCATTGTATAGAACATCCTCATACCCCGAGCAACCCCCCACACCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427537" ref_strand="+" ref_description="SGN-E427537 [STM-48-L15]">
      <seq>cacacaccaacgcaaacacgtagactatgtaatacgctatgtccccttctccttttcgtctctttccttgaaaaccctagaaatctcaggtttttaaggaaaaggggactttgattcggtgcaattttatccttttctccttctttgtcggtgtatttatggggttatatttcatgggattcccaattttctaaaaaaaaattggttgtgagaagttggtgctatggagagatccaatagcagagatttcaaagacttgactagctcctctagttccatctcagatggtgccctctttgatgcatcacaatatgcattttttgggcaagatatagcggaggaagttgaattgggtggtttagaggacggacaagacaatagtgatctggctgttggaggtggattangtgacgacgagatacaggaatatcatttatttgagaaagacgagggatctgccgtgggttcattatcagacatagatgatctagcaacgacattttcaaagttgaacagaaatgtcactggaccaaggcatcctggtgttattggtgaccgtggatcaggctctttttcangggaagttcatctgcagctgaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="64399" stop="58732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64099" g_stop="63815" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63814" i_stop="62400" i_length="1415">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62399" g_stop="62233" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="451" r_length="167" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62232" i_stop="60982" i_length="1251">
            <donor d_prob="0.834" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60981" g_stop="60925" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="508" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60924" i_stop="60658" i_length="267">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60657" g_stop="60582" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="583" r_length="75" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60581" i_stop="59052" i_length="1530">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59051" g_stop="59032" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="603" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E427537" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64099" e_stop="63815"/>
          <exon e_start="62399" e_stop="62233"/>
          <exon e_start="60981" e_stop="60925"/>
          <exon e_start="60657" e_stop="60582"/>
          <exon e_start="59051" e_stop="59032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACACCAACACAAACACGTAGACTATGTAATACGCTATGTCTCCTTCTCCTTTTCGTCTCTTTCTTTGAAAACCCTAGAAATCTCAGGTTTTTAAGGAAAAGAGGACTTTGATTCGGTGCAATTTTATCCCTTTCTCCTTTTTTTGTCGGTGTACATATGGGGTTATATTTCGCGGGATCCCCAATTTTCTAAGAAAAAATTGGTTGTTAGAAGTTGGTGCTATGGAGAGATCCAATAGCAGAGATTTCAAAGACTTGACTAGCTCCTCTGGCTCCATCTCAGGTAGCGTAGCTCACTGTTTTTTTTTTTTGTTCGTTCTTGAATCTTCAGATCGTTTTTTTTTTCTTTTTTTGGGTTGTGGTGTGGTGTGGGTAAAATTTGCTCTGATGTGATGCAATTTAATTACGAGTGTTCGGATGGAATGGGTTCAAATGAAGCTAGTTAGGGTGGATTTATATAGCTGACCTGAACTAGTTGGAGATTGAGATGTGAGGATTTCACTTTCTGTTTTGTTGCTTTAAAATTTGGTTTGATTCGTTGTTTTACTTTAGTTATCACTATTGGGATCAAATGGATGACAGGCCGTTATGTGGCTGACCCTAGTAGTTTAGGATTGAGGTGTAACAATTTGTATGTTTTTTTTTGGTGGTGGACGTTGGGGTTGGGGTTGGGAATGGAGGTTCGGGAGTTCAAATGTGCTTTCATTCAGTGGAATGAGATTTAAGAAATTCATGTAATTGTATCCTTACTAGTTTGGCAGTGAGTTATAGGCACTATTGTCAAAGGTAAGCCCTCGAGCGAAGCTCAAAACTTGTTGAGCATTTTGCCTGGATTAATGTGCTCTTTAGTGTCTTATCAAGGTTCTAAGGCACTCTGTCCCTTTCCAATGAGCCATTTCAGTCGGAAAAGGCGACAATAAATAATTGATTTATCACTTTATTGTAATTTTTTTTTAGTTTCTTTGTTTGTGTATATTATGTCAGCCATGCTTATAATTATTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTATTTAGGTGTTTGGCAATACTCAAAATAACTTATTTTAAGTTAAAAATAAAATCAAAAGTTAAAAGCTGGGGTAGGGGTGTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGCTCTTAATATTTTTACACAATTTCCAAATTACCCATGTAACTCTAACATTTCTTTCTTCCATTTTTCCCTTTTCATGTTTGACATAACAACTTCAGCACTTTTATCCAAACGCATAACTACTTATTTTAAAAATAAGTTTCAGCACTTTTAAAATTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAGTCTTGGACTATACATATTTATTTGTTTTTTCTTTCCTCCCTTTGCTCCATTTTTCATTGAGGCGCATGCTTTATTTGCGCTTAAAGTCCCAATGGACGTTAGAGCTATTTTGCTTTCGATAAACACTGGTTGTAGCAGTACTTGCTGTTGCTCTTCTCAATACCTTACTTTACATTCTATTTTTTTTAATTTTCCTTGTTCTACATGTTGTCATTAGTATGGGAAAAGAATATCAAGATTTGAATGTTTTAACTGTGTAAAGTATGTGTTAGACTTGACTGCTTATTTGGGCTTTGATGCAGATGGTGCCCTCTTTGATGCATCACAATATGCATTTTTTGGGCGAGATATAGCGGAGGAAGTTGAATTGGGTGGTTTAGAGGACGGACAAGACAATAGTGATCTGGGTGTTGGAGGTGGATTAGGTGATGACGAGATACAGGAGTATCATTTATTTGAGAAAGACGAGGTATAATCTGCTTATCCTTCCTGTGGACCTGACATAAAATAGTGCTGAGGCTTGGAATTTCGTTAACAGGGTTGTAATCAACATGATCTCTTGTTGCGACTGAACGAATGAGGACCTGTTTAACTCACAATAAGTGGGGAAATCCATCATAACATATGGAGATTATTTTCATGCCGTAGGCCATGAATTTGGGGAAATTCGTTAAAAGTTATTGTGCATTTGAGACATATTTATTCAAATGATCTAGGTTTTGCTAAGCGTTTTACTATTGATCCTTGTTTTCAGTTCACGTGTGTCTAGTCAGCACTATAGTTTCAGTCTTATACGAAATGACCTAGAGTATTTTTTTTGCAACAGAGTCATCAAATAGAAAGGATGTTTTATAGTTCTGCTGCACTTTGATCCGTTCTTTTCTTGCTTTCTCACCTTAGTACCCTAAAATGCTCCCCCTTTTCTAATTTTAAAAGTCATCCCCCCCCCCCCGCCTCCCCCTCTACTCTACAACGATGAGACTGCCTCGGTTCTGCAGCTCACCATAAGTCTAAGTGGTCACTGGGATTTTGACAATGGTGTTATCCAGGCAATGATCTAATTTAACTTAAGATGTGATCCCTTATTATGAGTAATCTTCAAAATGCTATAGCTGCCACGAGAGTGTATGGCCTATTCATGAAAAAGATGCGAGGCTTCTTCAGTGATTTATTCCTTTGTTAAGTACTGTCCTTGAATAAAATGTTAAAATTTGTGGAGACTCGAGAATTTGTGAATCTCAGCACCATCAAATAGACCTTAGACATTAGCTTTCTCTCTTCAAAACTATGTGCTCCACTTTCTGTTATTCTGTATAAATGGTTTGTCACGGCTGGTAACCTTTAGGGGTCATTTGGTTGGAAACAAGTTATCCCAGCATAAGTTATCCTGGGATAACTTATCCCACCATGTATGTGGGATAACTTATTCCATCACTATGATATAAATGGTGGGATAAGTTATCCCAAACATGGCAACCAAACAAGATAATTTTTTTTATCCCTTCACTATTTCCTTATTCCATCACTATTTTTTTAATAGCTCACACCAACGAGCCCTTAAAGTTTCTTGCATTTATTCTATGAGTGATCTTCAAGCATTTTTTGTTGTGGACTTTTCCCCGATGTTGTAAGTATGCTATATTTGCTGATTACCTCGATAAGTTGCTGGCTTTGGCACTATTTGCTATTTAGTGCCTCTAATTCAGTGCTTTATTTCCAGGGATCTGTGGTGGGCTCATTATCGGACATAGATGATCTAGCAACGACATTTTCAAAGGTCAGCTGATGCAACATCTTTATTACCTGATGTTCTGAGCCATTTGACTTGGACTTACTATTCGTGTACCTTCCAATTAGCACGAGTCTTTTTCTTTTTCCCGTATTTTTCTGTGAGACACAGTATGTCTTGAACTTTATTTCGTACTATTGTTGAGTAAAAACATCTAAAGCACTAAACCATGCTTGACTTTTTACATCCTCTATAGAGCTGTGGATATCTACTTGTACTAGATCAATCTGAATGCTTTTCTTTCCTTTTCTCCAGTTGAACAGAAATGTCACTGGACCAAGGCATCCTGGTGTTATTGGTGACCGTGGATCAGGCTCTTTTTCAAGGGAAAGTAAGTGCACATATTGATTAATTTTTTGTCCTTCCGTGATGTTTTTTCTTGAATATTTGATAAATCTCCTGGACTAGTTCCTGTATTGTCTGAAATATACCTTACTTGTTAACTTGCTTGAGGCTACTTTAAGATTGAAATGATGCCCCTTCATTGTTTTATCCGCCCATGCACATTTGTGCCACTAGTCCCAGATTTGTGAATATCTGTGATATCATATGTAGGCACCTTAAAATTCAGACAGTTGTGGCAATAATCCTTGATATTTTGATCTTTCAGACATCATATGAAGGGACTTGATCTCAGACCTTGGTAGGAATAAGTTATAGCCTTGTAGATGATCTGTTTCATCTTCGTGCTTGATTATTAAGGTCAGCAATGGTCCTCCCTTTGGGAGACTGACTATCTATATGTGCATGGTAGATGCCTTAATCAGTCTTGGCCTTTTTTTTTTTGGTTCTGAAAATCAGCGATCCTTTTTCCTTGCTACTACCATTAAAAAATGATTTGGCCCCGTGGTAGTAATACTTCAATAAAACTTCACCTTTCTGGATGATTTGTGATGGAAATCTATCCTGGCATGTGGCCTTGGGCTGCTAGAGTGGGGAGCTTGAGAAACTTCATGGAATGATTTTTTATTTTTGGATAATGAACTTCATGAAATGATTTATAAGCTTAGGACAACCCCCCACCCCTCTTAAAAAATAGTCATAAAAGGTTACATCACACAACACACAGAAATAAAACAGAAAGGTGGTTTTCTTATATGGTGACATGTAGAGTATTTTAAGTACATAGGTTTTAGCCATATCTATTTTGTTGTTTGTTGAAATGAGATCAACTTATCAGAAGTTTTTCCCTGTTGTAATTTTTCTGTTTTTAGCACGTGTTTTCCTTTTCGCATCTCCTGCCACTTGCTGGATCTGCCCCTATATTGGTTTGACGAGCATGTTTTCGTGTGGCACACTTTTGTACCCTCGTTCCATCTCGTGCCTCCTTTTAGGCACACTTAGTTTGTTGATTACTTACTTATGCGATATTCTGTATCTATGAGGTGAACACATTCTTTCAATAAAATGTCATCTGGATTGTTGGTTACCAGTTCTCAATCTCATGTTGCAGTATTATTACTATGTTACACAAGATGTGCTTTTAGAGATGTCTTTAGGGGAACAGACATGTTCACGCCAAAAAAGGGTCCATGTTACATGAATTATTAGTTTTAGGAGAGTAGAAGTTTAATGTCTAATTTTCATTGGAGTCCTCTCTGAATTAGTTCAATTTGACAAACATGAATGTGAGTTTCTTTTATTTGCCTTTATGTTGATATATTATGTTGGACTCAAATATTCTCCCTCCGTTCCATTTCACATGACATTTATCTTTTTTGGCTAGTAATGAAGATTTACATGTTTCTGTATTTGAAAATTCTTTGATCCTAACATTTTTATTTTGCTCTTAATGACATGCTCTAGTTAGGATGAAATGGCATGTTGAAAATAACTACTAATATATACTTGGTATTTGCAGGTTCATCTGCAGCTGATTGG</genome_strand>
        <mrna_strand>CACACACCAACGCAAACACGTAGACTATGTAATACGCTATGTCCCCTTCTCCTTTTCGTCTCTTTCCTTGAAAACCCTAGAAATCTCAGGTTTTTAAGGAAAAGGGGACTTTGATTCGGTGCAATTTTATCCTTTTCTCC-TTCTTTGTCGGTGTATTTATGGGGTTATATTTCATGGGATTCCCAATTTTCTAAAAAAAAATTGGTTGTGAGAAGTTGGTGCTATGGAGAGATCCAATAGCAGAGATTTCAAAGACTTGACTAGCTCCTCTAGTTCCATCTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCCCTCTTTGATGCATCACAATATGCATTTTTTGGGCAAGATATAGCGGAGGAAGTTGAATTGGGTGGTTTAGAGGACGGACAAGACAATAGTGATCTGGCTGTTGGAGGTGGATTANGTGACGACGAGATACAGGAATATCATTTATTTGAGAAAGACGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTGCCGTGGGTTCATTATCAGACATAGATGATCTAGCAACGACATTTTCAAAG...........................................................................................................................................................................................................................................................................TTGAACAGAAATGTCACTGGACCAAGGCATCCTGGTGTTATTGGTGACCGTGGATCAGGCTCTTTTTCANGGG-AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTGCAGCTGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487335" ref_strand="+" ref_description="SGN-E487335 [cSTE-25-O15]">
      <seq>cacacaccaacgcaaacacgtagactatgtaatacgctatgtccccttctccttttcgtctctttccttgaaaaccctagaaatctcaggtttttaaggaaaaggggactttgattcggtgcaattttatccttttctccttctttgtcggtgtatttatggggttatatttcatgggattcccaattttctaaaaaaaaattggttgtgagaagttggtgctatggagagatccaatagcagagatttcaaagacttgactagctcctctagttccatctcagatggtgccctctttgatgcatcacaatatgcattttttgggcaagatatagcggaggaagttgaattgggtggtttagaggacggacaagacaatagtgatctggctgttggaggtggattangtgacgacgagatacaggaatatcatttatttgagaaagacgagggatctgccgtgggttcattatcagacatagatgatctagcaacgacattttcaaagttgaacagaaatgtcactggaccaaggcatcctggtgttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="64399" stop="60315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64099" g_stop="63815" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63814" i_stop="62400" i_length="1415">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62399" g_stop="62233" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="451" r_length="167" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62232" i_stop="60982" i_length="1251">
            <donor d_prob="0.834" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60981" g_stop="60925" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="508" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60924" i_stop="60658" i_length="267">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60657" g_stop="60615" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="551" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E487335" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64099" e_stop="63815"/>
          <exon e_start="62399" e_stop="62233"/>
          <exon e_start="60981" e_stop="60925"/>
          <exon e_start="60657" e_stop="60615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACACCAACACAAACACGTAGACTATGTAATACGCTATGTCTCCTTCTCCTTTTCGTCTCTTTCTTTGAAAACCCTAGAAATCTCAGGTTTTTAAGGAAAAGAGGACTTTGATTCGGTGCAATTTTATCCCTTTCTCCTTTTTTTGTCGGTGTACATATGGGGTTATATTTCGCGGGATCCCCAATTTTCTAAGAAAAAATTGGTTGTTAGAAGTTGGTGCTATGGAGAGATCCAATAGCAGAGATTTCAAAGACTTGACTAGCTCCTCTGGCTCCATCTCAGGTAGCGTAGCTCACTGTTTTTTTTTTTTGTTCGTTCTTGAATCTTCAGATCGTTTTTTTTTTCTTTTTTTGGGTTGTGGTGTGGTGTGGGTAAAATTTGCTCTGATGTGATGCAATTTAATTACGAGTGTTCGGATGGAATGGGTTCAAATGAAGCTAGTTAGGGTGGATTTATATAGCTGACCTGAACTAGTTGGAGATTGAGATGTGAGGATTTCACTTTCTGTTTTGTTGCTTTAAAATTTGGTTTGATTCGTTGTTTTACTTTAGTTATCACTATTGGGATCAAATGGATGACAGGCCGTTATGTGGCTGACCCTAGTAGTTTAGGATTGAGGTGTAACAATTTGTATGTTTTTTTTTGGTGGTGGACGTTGGGGTTGGGGTTGGGAATGGAGGTTCGGGAGTTCAAATGTGCTTTCATTCAGTGGAATGAGATTTAAGAAATTCATGTAATTGTATCCTTACTAGTTTGGCAGTGAGTTATAGGCACTATTGTCAAAGGTAAGCCCTCGAGCGAAGCTCAAAACTTGTTGAGCATTTTGCCTGGATTAATGTGCTCTTTAGTGTCTTATCAAGGTTCTAAGGCACTCTGTCCCTTTCCAATGAGCCATTTCAGTCGGAAAAGGCGACAATAAATAATTGATTTATCACTTTATTGTAATTTTTTTTTAGTTTCTTTGTTTGTGTATATTATGTCAGCCATGCTTATAATTATTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTATTTAGGTGTTTGGCAATACTCAAAATAACTTATTTTAAGTTAAAAATAAAATCAAAAGTTAAAAGCTGGGGTAGGGGTGTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGCTCTTAATATTTTTACACAATTTCCAAATTACCCATGTAACTCTAACATTTCTTTCTTCCATTTTTCCCTTTTCATGTTTGACATAACAACTTCAGCACTTTTATCCAAACGCATAACTACTTATTTTAAAAATAAGTTTCAGCACTTTTAAAATTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAGTCTTGGACTATACATATTTATTTGTTTTTTCTTTCCTCCCTTTGCTCCATTTTTCATTGAGGCGCATGCTTTATTTGCGCTTAAAGTCCCAATGGACGTTAGAGCTATTTTGCTTTCGATAAACACTGGTTGTAGCAGTACTTGCTGTTGCTCTTCTCAATACCTTACTTTACATTCTATTTTTTTTAATTTTCCTTGTTCTACATGTTGTCATTAGTATGGGAAAAGAATATCAAGATTTGAATGTTTTAACTGTGTAAAGTATGTGTTAGACTTGACTGCTTATTTGGGCTTTGATGCAGATGGTGCCCTCTTTGATGCATCACAATATGCATTTTTTGGGCGAGATATAGCGGAGGAAGTTGAATTGGGTGGTTTAGAGGACGGACAAGACAATAGTGATCTGGGTGTTGGAGGTGGATTAGGTGATGACGAGATACAGGAGTATCATTTATTTGAGAAAGACGAGGTATAATCTGCTTATCCTTCCTGTGGACCTGACATAAAATAGTGCTGAGGCTTGGAATTTCGTTAACAGGGTTGTAATCAACATGATCTCTTGTTGCGACTGAACGAATGAGGACCTGTTTAACTCACAATAAGTGGGGAAATCCATCATAACATATGGAGATTATTTTCATGCCGTAGGCCATGAATTTGGGGAAATTCGTTAAAAGTTATTGTGCATTTGAGACATATTTATTCAAATGATCTAGGTTTTGCTAAGCGTTTTACTATTGATCCTTGTTTTCAGTTCACGTGTGTCTAGTCAGCACTATAGTTTCAGTCTTATACGAAATGACCTAGAGTATTTTTTTTGCAACAGAGTCATCAAATAGAAAGGATGTTTTATAGTTCTGCTGCACTTTGATCCGTTCTTTTCTTGCTTTCTCACCTTAGTACCCTAAAATGCTCCCCCTTTTCTAATTTTAAAAGTCATCCCCCCCCCCCCGCCTCCCCCTCTACTCTACAACGATGAGACTGCCTCGGTTCTGCAGCTCACCATAAGTCTAAGTGGTCACTGGGATTTTGACAATGGTGTTATCCAGGCAATGATCTAATTTAACTTAAGATGTGATCCCTTATTATGAGTAATCTTCAAAATGCTATAGCTGCCACGAGAGTGTATGGCCTATTCATGAAAAAGATGCGAGGCTTCTTCAGTGATTTATTCCTTTGTTAAGTACTGTCCTTGAATAAAATGTTAAAATTTGTGGAGACTCGAGAATTTGTGAATCTCAGCACCATCAAATAGACCTTAGACATTAGCTTTCTCTCTTCAAAACTATGTGCTCCACTTTCTGTTATTCTGTATAAATGGTTTGTCACGGCTGGTAACCTTTAGGGGTCATTTGGTTGGAAACAAGTTATCCCAGCATAAGTTATCCTGGGATAACTTATCCCACCATGTATGTGGGATAACTTATTCCATCACTATGATATAAATGGTGGGATAAGTTATCCCAAACATGGCAACCAAACAAGATAATTTTTTTTATCCCTTCACTATTTCCTTATTCCATCACTATTTTTTTAATAGCTCACACCAACGAGCCCTTAAAGTTTCTTGCATTTATTCTATGAGTGATCTTCAAGCATTTTTTGTTGTGGACTTTTCCCCGATGTTGTAAGTATGCTATATTTGCTGATTACCTCGATAAGTTGCTGGCTTTGGCACTATTTGCTATTTAGTGCCTCTAATTCAGTGCTTTATTTCCAGGGATCTGTGGTGGGCTCATTATCGGACATAGATGATCTAGCAACGACATTTTCAAAGGTCAGCTGATGCAACATCTTTATTACCTGATGTTCTGAGCCATTTGACTTGGACTTACTATTCGTGTACCTTCCAATTAGCACGAGTCTTTTTCTTTTTCCCGTATTTTTCTGTGAGACACAGTATGTCTTGAACTTTATTTCGTACTATTGTTGAGTAAAAACATCTAAAGCACTAAACCATGCTTGACTTTTTACATCCTCTATAGAGCTGTGGATATCTACTTGTACTAGATCAATCTGAATGCTTTTCTTTCCTTTTCTCCAGTTGAACAGAAATGTCACTGGACCAAGGCATCCTGGTGTTATTG</genome_strand>
        <mrna_strand>CACACACCAACGCAAACACGTAGACTATGTAATACGCTATGTCCCCTTCTCCTTTTCGTCTCTTTCCTTGAAAACCCTAGAAATCTCAGGTTTTTAAGGAAAAGGGGACTTTGATTCGGTGCAATTTTATCCTTTTCTCC-TTCTTTGTCGGTGTATTTATGGGGTTATATTTCATGGGATTCCCAATTTTCTAAAAAAAAATTGGTTGTGAGAAGTTGGTGCTATGGAGAGATCCAATAGCAGAGATTTCAAAGACTTGACTAGCTCCTCTAGTTCCATCTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCCCTCTTTGATGCATCACAATATGCATTTTTTGGGCAAGATATAGCGGAGGAAGTTGAATTGGGTGGTTTAGAGGACGGACAAGACAATAGTGATCTGGCTGTTGGAGGTGGATTANGTGACGACGAGATACAGGAATATCATTTATTTGAGAAAGACGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTGCCGTGGGTTCATTATCAGACATAGATGATCTAGCAACGACATTTTCAAAG...........................................................................................................................................................................................................................................................................TTGAACAGAAATGTCACTGGACCAAGGCATCCTGGTGTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408961" ref_strand="+" ref_description="SGN-E408961 [PPI-12-B2]">
      <seq>cacactaacacaaacacgtagactatgtaatacgctatgtccccttctccatttcgtctctttccttgaaaaccctagaaatctcaggtttttaaagaaaaggggactttgattcggtgcaattttatccttttctccttctttgtcggtgtatttatggggttatatttcatgggattcccaattttctaaaaaaaaattggttgtgagaagttggtgctatggagagatccaatagcagagatttcaaagacttgactagctcctctagctccatctcagatggtgccctctttgatgcatcacaatatgcattttttgggcgagatatagcggaggaagttgaattgggtggtttagaggacggaaaagacaatagtgatctggctgttggaggtggattaggtgacgacgagatacaggagtatcatttatttgagaaagacgagggatctgccgtgggctcattatcagacatagatgatctagcaacgacatttttcaagttgaacagaaatgtcactgggaccaggcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="64397" stop="60326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64097" g_stop="63815" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63814" i_stop="62400" i_length="1415">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62399" g_stop="62233" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="449" r_length="167" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62232" i_stop="60982" i_length="1251">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60981" g_stop="60925" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="506" r_length="57" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60924" i_stop="60658" i_length="267">
            <donor d_prob="0.985" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60657" g_stop="60626" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="538" r_length="32" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E408961" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64097" e_stop="63815"/>
          <exon e_start="62399" e_stop="62233"/>
          <exon e_start="60981" e_stop="60925"/>
          <exon e_start="60657" e_stop="60626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACCAACACAAACACGTAGACTATGTAATACGCTATGTCTCCTTCTCCTTTTCGTCTCTTTCTTTGAAAACCCTAGAAATCTCAGGTTTTTAAGGAAAAGAGGACTTTGATTCGGTGCAATTTTATCCCTTTCTCCTTTTTTTGTCGGTGTACATATGGGGTTATATTTCGCGGGATCCCCAATTTTCTAAGAAAAAATTGGTTGTTAGAAGTTGGTGCTATGGAGAGATCCAATAGCAGAGATTTCAAAGACTTGACTAGCTCCTCTGGCTCCATCTCAGGTAGCGTAGCTCACTGTTTTTTTTTTTTGTTCGTTCTTGAATCTTCAGATCGTTTTTTTTTTCTTTTTTTGGGTTGTGGTGTGGTGTGGGTAAAATTTGCTCTGATGTGATGCAATTTAATTACGAGTGTTCGGATGGAATGGGTTCAAATGAAGCTAGTTAGGGTGGATTTATATAGCTGACCTGAACTAGTTGGAGATTGAGATGTGAGGATTTCACTTTCTGTTTTGTTGCTTTAAAATTTGGTTTGATTCGTTGTTTTACTTTAGTTATCACTATTGGGATCAAATGGATGACAGGCCGTTATGTGGCTGACCCTAGTAGTTTAGGATTGAGGTGTAACAATTTGTATGTTTTTTTTTGGTGGTGGACGTTGGGGTTGGGGTTGGGAATGGAGGTTCGGGAGTTCAAATGTGCTTTCATTCAGTGGAATGAGATTTAAGAAATTCATGTAATTGTATCCTTACTAGTTTGGCAGTGAGTTATAGGCACTATTGTCAAAGGTAAGCCCTCGAGCGAAGCTCAAAACTTGTTGAGCATTTTGCCTGGATTAATGTGCTCTTTAGTGTCTTATCAAGGTTCTAAGGCACTCTGTCCCTTTCCAATGAGCCATTTCAGTCGGAAAAGGCGACAATAAATAATTGATTTATCACTTTATTGTAATTTTTTTTTAGTTTCTTTGTTTGTGTATATTATGTCAGCCATGCTTATAATTATTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTATTTAGGTGTTTGGCAATACTCAAAATAACTTATTTTAAGTTAAAAATAAAATCAAAAGTTAAAAGCTGGGGTAGGGGTGTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGCTCTTAATATTTTTACACAATTTCCAAATTACCCATGTAACTCTAACATTTCTTTCTTCCATTTTTCCCTTTTCATGTTTGACATAACAACTTCAGCACTTTTATCCAAACGCATAACTACTTATTTTAAAAATAAGTTTCAGCACTTTTAAAATTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAGTCTTGGACTATACATATTTATTTGTTTTTTCTTTCCTCCCTTTGCTCCATTTTTCATTGAGGCGCATGCTTTATTTGCGCTTAAAGTCCCAATGGACGTTAGAGCTATTTTGCTTTCGATAAACACTGGTTGTAGCAGTACTTGCTGTTGCTCTTCTCAATACCTTACTTTACATTCTATTTTTTTTAATTTTCCTTGTTCTACATGTTGTCATTAGTATGGGAAAAGAATATCAAGATTTGAATGTTTTAACTGTGTAAAGTATGTGTTAGACTTGACTGCTTATTTGGGCTTTGATGCAGATGGTGCCCTCTTTGATGCATCACAATATGCATTTTTTGGGCGAGATATAGCGGAGGAAGTTGAATTGGGTGGTTTAGAGGACGGACAAGACAATAGTGATCTGGGTGTTGGAGGTGGATTAGGTGATGACGAGATACAGGAGTATCATTTATTTGAGAAAGACGAGGTATAATCTGCTTATCCTTCCTGTGGACCTGACATAAAATAGTGCTGAGGCTTGGAATTTCGTTAACAGGGTTGTAATCAACATGATCTCTTGTTGCGACTGAACGAATGAGGACCTGTTTAACTCACAATAAGTGGGGAAATCCATCATAACATATGGAGATTATTTTCATGCCGTAGGCCATGAATTTGGGGAAATTCGTTAAAAGTTATTGTGCATTTGAGACATATTTATTCAAATGATCTAGGTTTTGCTAAGCGTTTTACTATTGATCCTTGTTTTCAGTTCACGTGTGTCTAGTCAGCACTATAGTTTCAGTCTTATACGAAATGACCTAGAGTATTTTTTTTGCAACAGAGTCATCAAATAGAAAGGATGTTTTATAGTTCTGCTGCACTTTGATCCGTTCTTTTCTTGCTTTCTCACCTTAGTACCCTAAAATGCTCCCCCTTTTCTAATTTTAAAAGTCATCCCCCCCCCCCCGCCTCCCCCTCTACTCTACAACGATGAGACTGCCTCGGTTCTGCAGCTCACCATAAGTCTAAGTGGTCACTGGGATTTTGACAATGGTGTTATCCAGGCAATGATCTAATTTAACTTAAGATGTGATCCCTTATTATGAGTAATCTTCAAAATGCTATAGCTGCCACGAGAGTGTATGGCCTATTCATGAAAAAGATGCGAGGCTTCTTCAGTGATTTATTCCTTTGTTAAGTACTGTCCTTGAATAAAATGTTAAAATTTGTGGAGACTCGAGAATTTGTGAATCTCAGCACCATCAAATAGACCTTAGACATTAGCTTTCTCTCTTCAAAACTATGTGCTCCACTTTCTGTTATTCTGTATAAATGGTTTGTCACGGCTGGTAACCTTTAGGGGTCATTTGGTTGGAAACAAGTTATCCCAGCATAAGTTATCCTGGGATAACTTATCCCACCATGTATGTGGGATAACTTATTCCATCACTATGATATAAATGGTGGGATAAGTTATCCCAAACATGGCAACCAAACAAGATAATTTTTTTTATCCCTTCACTATTTCCTTATTCCATCACTATTTTTTTAATAGCTCACACCAACGAGCCCTTAAAGTTTCTTGCATTTATTCTATGAGTGATCTTCAAGCATTTTTTGTTGTGGACTTTTCCCCGATGTTGTAAGTATGCTATATTTGCTGATTACCTCGATAAGTTGCTGGCTTTGGCACTATTTGCTATTTAGTGCCTCTAATTCAGTGCTTTATTTCCAGGGATCTGTGGTGGGCTCATTATCGGACATAGATGATCTAGCAACGACATTTTCAAAGGTCAGCTGATGCAACATCTTTATTACCTGATGTTCTGAGCCATTTGACTTGGACTTACTATTCGTGTACCTTCCAATTAGCACGAGTCTTTTTCTTTTTCCCGTATTTTTCTGTGAGACACAGTATGTCTTGAACTTTATTTCGTACTATTGTTGAGTAAAAACATCTAAAGCACTAAACCATGCTTGACTTTTTACATCCTCTATAGAGCTGTGGATATCTACTTGTACTAGATCAATCTGAATGCTTTTCTTTCCTTTTCTCCAGTTGAACAGAAATGTCACTGGACCAAGGCATCC</genome_strand>
        <mrna_strand>CACACTAACACAAACACGTAGACTATGTAATACGCTATGTCCCCTTCTCCATTTCGTCTCTTTCCTTGAAAACCCTAGAAATCTCAGGTTTTTAAAGAAAAGGGGACTTTGATTCGGTGCAATTTTATCCTTTTCTCC-TTCTTTGTCGGTGTATTTATGGGGTTATATTTCATGGGATTCCCAATTTTCTAAAAAAAAATTGGTTGTGAGAAGTTGGTGCTATGGAGAGATCCAATAGCAGAGATTTCAAAGACTTGACTAGCTCCTCTAGCTCCATCTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCCCTCTTTGATGCATCACAATATGCATTTTTTGGGCGAGATATAGCGGAGGAAGTTGAATTGGGTGGTTTAGAGGACGGAAAAGACAATAGTGATCTGGCTGTTGGAGGTGGATTAGGTGACGACGAGATACAGGAGTATCATTTATTTGAGAAAGACGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTGCCGTGGGCTCATTATCAGACATAGATGATCTAGCAACGACATTTTTCAAG...........................................................................................................................................................................................................................................................................TTGAACAGAAATGTCACTGGGACCAGGCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351864" ref_strand="+" ref_description="SGN-E351864 [cTOS-8-K24]">
      <seq>acttcgaaggtgtttctccctgtatcagacttcctagtactccaaactttgttattccgggagattttcactaatttttaagcgatctcagcataagggcattctccataagatccaccttctataatgtccaacacttctttgttactatcatcctgtccctgatagaactatttcttccgtgactcatcatctatacagtgatttggaacacttctcaagaatgaggtgatctatcccaagaactactaactgactctactggtagtgccacaaaattatttactctgtctttgtggtttagtttcttcgagattggatagtagagtgccaagaaaacatctcttaattggttccaagtgaagattgagttgcatggaagctcagtgaaccatataggagcctctcccttcagtgagagaggaaacactgtgagccctattacatctagatccatgtcaggcctccccacactacatttacacactgcccttaccttagctatttgggcatgtggatcctcaggcggtagccctgaaaacaaacctctagcagtgagcatttgcatcaggctactagttaccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="73620" stop="72428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73320" g_stop="72729" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E351864" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73320" e_stop="72729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAGCTTTGTTATTTTGGGATATTTTCTCTAATTTTTTTTGGCAATTTCAGCATAAGGACATTTCCCATAAGATCCACCTGCTATAGTGTCCAACACTGCTTTGTTACTATCATCTTGTCCCCGATAGAAGTATTCGTTTAGTGACTCATCATCTATACGGTGATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCTAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTATTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGCGTGCTAAGAAAACATCCCTTAGTTGGTTCCAAGTGAAGATTGAGTTGTATGGGAGTTCAGTGAACCATATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACTCTGAACCCTATTACATCTAAATCCAAATCAGGCCTCCCTACACAGCTTTTACACACTGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAGAGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</genome_strand>
        <mrna_strand>ACTTCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAACTTTGTTATTCCGGGAGATTTTCACTAA--TTTTTAAGCGATCTCAGCATAAGGGCATTCTCCATAAGATCCACCTTCTATAATGTCCAACACTTCTTTGTTACTATCATCCTGTCCCTGATAGAACTATTTCTTCCGTGACTCATCATCTATACAGTGATTTGGAACACTTCTCAAGAATGAGGTG-ATCTATCCCAAGAACTACTAACTGACTCTACTGGTAGTGCCACAAAATTATTTACTCTGTCTTTGTGGTTTAGTTTCTTCGAGATTGGATAGTAGAGTGCCAAGAAAACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGCATGGAAGCTCAGTGAACCATATAGGAGCCTCTCCCTTCAGTGAGAGAGGAAACACTGTGAGCCCTATTACATCTAGATCCATGTCAGGCCTCCCCACACTACATTTACACACTGCCCTTACCTTAGCTATTTGGGCATGTGGATCCTCAGGCGGTAGCCCTGAAAACAAACCTCTAGCAGTGAGCATTTGCATCAGGCTACTAGTTACCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="81198" stop="79883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80898" g_stop="80183" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80898" e_stop="80183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTCTTCGTTCCAAAACACTTCAACTCTTCGAATATGGGTACTGGGATTACTTCTCTGAACTTCATAACGAACCTGCAGGACGGACCGTCATAGACACGACAGACCGTCAGAAGCTTCGTAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCATCACAAGCACAACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTTTGCATTTTTTCGCTCAAAATCTCTGCATTCAGCTTTGGATAGATTTCCTGCAAAATGAAAAGAAACTTATATAAAAATTAGCACAAAAATACTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACTGTGAAACCACGGTATATCAACACCCTTAACTTAAATTTGTTGTTTGTCCTCAAGCGACGCACTATGACTCAATACAAAATCTTTGTACAATAATATCCATGTTTTATCCTTTGCAATCATTTGGCTTTCTATCCCGATTAATCTCATCAAATCTATGCATGCTATTACTATAAGGCTTGAATTATGTGGGATCAGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCATCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTTAAAAGAAAATCCTACTTTTTCACACAATGATTTCAGTTTGAGTATAAGAATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286708" ref_strand="+" ref_description="SGN-E286708 [cLES-14-D9]">
      <seq>tcgcgaggtccgtcatggtcacgacggaccgtcatggactccgtcgtcccatacttatgcaatttcttttgttgctcttcttcattaccctcaacggcaagtatggcggaccgtcataggcacaacggtccgtcgagggccttcgttccaaaacactttaactcttggaatatgggtactgggattacttctctgaacttcatgacgaacctgtaggacggaccgtcatagacacgatggaccgtcacaagcttcgtaaccccatacttggtcagacttccccatcttccttcagcagctgcactacgctgacacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaataaaaagaaactaatatagaaattagcacaaaaaggattttagacacactaaacttaaggaaaaagtattaataataccatgaaaccacggtatatcacttggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0255N21-wilzW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0255N21.2" temp_strand="-" temp_description="C00HBa0255N21.2  CU928481.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0255N21 sequenced_by:sanger upload_account_name:uk">
        <position start="81332" stop="80209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81032" g_stop="80517" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0255N21.2" gen_strand="-" ref_id="SGN-E286708" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0255N21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81032" e_stop="80517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGACGGATCATCATAGTCACGACGAACCGTCATGGACTCCGTCATCCCATACTTATGCAATTTCTTCTGCTGCTCTTCTTCATTACCCTCGACGGCAAGAATGACGGACCGTCATAGGCACAATGGTCCGTCGAGGGTCTTCGTTCCAAAACACTTCAACTCTTCGAATATGGGTACTGGGATTACTTCTCTGAACTTCATAACGAACCTGCAGGACGGACCGTCATAGACACGACAGACCGTCAGAAGCTTCGTAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCATCACAAGCACAACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTTTGCATTTTTTCGCTCAAAATCTCTGCATTCAGCTTTGGATAGATTTCCTGCAAAATGAAAAGAAACTTATATAAAAATTAGCACAAAAATACTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACTGTGAAACCACG</genome_strand>
        <mrna_strand>TCGCGA-GGTCCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTTTGTTGCTCTTCTTCATTACCCTCAACGGCAAGTATGGCGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTCCAAAACACTTTAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGTAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAACCCCATACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTAATATAGAAATTAGCACAAAAAGGATTTTAGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="58457" PGL_stop="56151"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58457" e_stop="56151"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="58457" e_stop="56151" e_length="2307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58457" stop="57885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58366" stop="57982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58066" stop="57283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57834" stop="57397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57720" stop="56985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57167" stop="56515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56578" stop="56198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56537" stop="56151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56532" stop="56211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606232" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAACAGCAGAGACTTCATCTTTCAGTTCAGCCTTCTTTAGCTCATTTTTCAGCGCTAAGATCCCAATTGTATAATTCCTTCCCTTCACCATCTCATCTAGGTAAGTATGGATTGGCAGATTTCAGAGATTCACGATCTAAGCCATCACAGAAGGTTAGACAAAATGTGCGTTTTTCTAAACAAGGCTCTGATGCTGCTTGCCACAAAAGTGAAAGTAATGTGCCACAGTTCCGATCTAAGTATATGACTGGTGATGAAATAGAGAGCATCCTGAAAATGCAGCATTCTGCAGCACATGGCAATGATCCATATGTAGATGACTACTATCACCAGGCCCGCCTTGCAAAGAAAGCAGCTGAGTCTAGGTCAAAATATCGCTTTTGTCCAAATAAGGAACAGTCTTCTCGGTCACGTAATAGTGCAGAATCACAGCCTCATCTTCATGTTGATGCTCAGGGGCGGGTGTCATTTTCTTCCATCCGCAGGCCTCGTCCACTTCTTGAAGTTGATCCACCAGGCTTTGTTTGCATTGACAGCAGTGCTGACCAGAAGATATCTGAGAGACCCTTGGAACAGGAGCCAATGCTGGCAGCTAGAATTACAATAGAAGATGGTTTCTATCTTCTCACTGAGGTAGATGACATTGACAGGCTCCTTCAGTTTAGTCAGCCCCAAGACTGTGGTGCTCAGCTCAAGCGGAAGCGACAGATCCTGCTGGAAGGCATGGCCGCCTCACTTCAACTAGTTGATCCGCTTGGTAAAGGTGGAAGTTCTGTCGGGCTTACTCCTAAAGATGACATTGTATTTCTATGGTTGGTGTCTCTTCCCAAGGGCCGGAATCTCATGTCAAGGTATCTTCAGCTTCTTCTGCCTGGCAATGAGCTTGTCAGAATAGTTTGTATGGCAATTTTCCGCCATTTGAGGTTTTTGTTTGGCGGTCATCCACCTGATGTTGGAGCAGCTGAAACCATCACTGATCTTGCAAAAGTAGTCTCTAAATGTGTCACTCTCATGGACCTTAATTCACTGAGTGCTTGTCTTGCTGCTGTTGTGTGTTCCTCAGAACAACCACCTCTTCGCCCTCTTGGAAGCCCTGCTGGAGATGGAGCTTCTATTATTTTAAAATCTGTTCTTGAAGGGGCCACTCATCTATTAACTGATTCTAAGGCTGCTAGCAGTTTCAGCATGCCTAATCCTGCCCTTTGGCAGGCATCTTTTGATGCCTTTTTTGGTTTACTTACAAAGTATTGTCTGAGCAAGTATGACAGTATCATGCAATCGATTCTAGCACAATCCCAGCCGGATGCTGAAATTATTGGTGCAGAGGCTGCAAGAGCGGTAAGCAGAGAAATGCCTGTGGAACTTTTACGTGCTAGTCTTCCACATACAAATGACCACCAAAAGAAGCTGTTGTTGAATTTCGCTCAGCGGTCTATGCCTGTTACTGGATTCAGTTCTCATGGTGGAAGCAGTGGACATATAGATCCCGAATCTGTAAGCTGTTAGCTGAGATGGTAAGATTTCATAATAGCTAGTGCAGTTGTACATCTGTAGGTCTCAAGGTTACTTTCTGGCTTCTTTTTGCCAGAACATGTTCTGCTTCAGCATCAGTCCAGGAGAACATAGAAGGCTGGAGCAAGAGTATGCATATATGTTAGGGGTCTTTTTAAGGCCTAAGGTTCCTCTTCGTCCTAATAACTCTTCCCACCTCCACCCTCACCCCCACCCCACCTCACCCCCATTTCTCCCACCATCCTTCCCTGTTTCTTTTCTTTGTCTCACTTCTTTCTTTTGCTTCATTGAAGGGAAACATGGGTTTCTTTATCCTTTTCCTTCTATGTGATGGGTGTTATCTTACTTTACCGTGTATTATGTCTGAAAGAAACGGGGTTATTGGTCACTCTTCTAAGGTTTTCCATTCAAAGAGCTTTATTTTTTATGCTCTTTCTGTAAACTCGGATAAAAGCTTGAAGGATAGAATGTACAGGTGATTTGTGGAGTTTGGCAACTCTTGATGCACTTGGCCCTCTCCCTCTCTGCTTTCACGCAGAGGGTAAAAAGGATTCTTCACCCTGAAGTAATGTTGCAAGCTTGGAGGAGAAGAGGGTTCAGCTCTCGCCGTTTCAGTAGGAGACATTTGCTATACTTGAAAACTTTCTAAGTGAAAACTGTAATAACTCGATGTTCTTGTGCATTAACAATTACTCTGTTACGTTTCCCCGAAATTGTTTACAAAGTTACTTTAGAACTTGCTTACAGTTCTCTTCATGTCTTGATTATTTCCTGTATGAGAGTGAAGTTTGGT</gDNA_template>
            <first_frame> S  N  S  R  D  F  I  F  Q  F  S  L  L  *  L  I  F  Q  R  *  D  P  N  C  I  I  P  S  L  H  H  L  I  *  V  S  M  D  W  Q  I  S  E  I  H  D  L  S  H  H  R  R  L  D  K  M  C  V  F  L  N  K  A  L  M  L  L  A  T  K  V  K  V  M  C  H  S  S  D  L  S  I  *  L  V  M  K  *  R  A  S  *  K  C  S  I  L  Q  H  M  A  M  I  H  M  *  M  T  T  I  T  R  P  A  L  Q  R  K  Q  L  S  L  G  Q  N  I  A  F  V  Q  I  R  N  S  L  L  G  H  V  I  V  Q  N  H  S  L  I  F  M  L  M  L  R  G  G  C  H  F  L  P  S  A  G  L  V  H  F  L  K  L  I  H  Q  A  L  F  A  L  T  A  V  L  T  R  R  Y  L  R  D  P  W  N  R  S  Q  C  W  Q  L  E  L  Q  *  K  M  V  S  I  F  S  L  R  *  M  T  L  T  G  S  F  S  L  V  S  P  K  T  V  V  L  S  S  S  G  S  D  R  S  C  W  K  A  W  P  P  H  F  N  *  L  I  R  L  V  K  V  E  V  L  S  G  L  L  L  K  M  T  L  Y  F  Y  G  W  C  L  F  P  R  A  G  I  S  C  Q  G  I  F  S  F  F  C  L  A  M  S  L  S  E  *  F  V  W  Q  F  S  A  I  *  G  F  C  L  A  V  I  H  L  M  L  E  Q  L  K  P  S  L  I  L  Q  K  *  S  L  N  V  S  L  S  W  T  L  I  H  *  V  L  V  L  L  L  L  C  V  P  Q  N  N  H  L  F  A  L  L  E  A  L  L  E  M  E  L  L  L  F  *  N  L  F  L  K  G  P  L  I  Y  *  L  I  L  R  L  L  A  V  S  A  C  L  I  L  P  F  G  R  H  L  L  M  P  F  L  V  Y  L  Q  S  I  V  *  A  S  M  T  V  S  C  N  R  F  *  H  N  P  S  R  M  L  K  L  L  V  Q  R  L  Q  E  R  *  A  E  K  C  L  W  N  F  Y  V  L  V  F  H  I  Q  M  T  T  K  R  S  C  C  *  I  S  L  S  G  L  C  L  L  L  D  S  V  L  M  V  E  A  V  D  I  *  I  P  N  L  *  A  V  S  *  D  G  K  I  S  *  *  L  V  Q  L  Y  I  C  R  S  Q  G  Y  F  L  A  S  F  C  Q  N  M  F  C  F  S  I  S  P  G  E  H  R  R  L  E  Q  E  Y  A  Y  M  L  G  V  F  L  R  P  K  V  P  L  R  P  N  N  S  S  H  L  H  P  H  P  H  P  T  S  P  P  F  L  P  P  S  F  P  V  S  F  L  C  L  T  S  F  F  C  F  I  E  G  K  H  G  F  L  Y  P  F  P  S  M  *  W  V  L  S  Y  F  T  V  Y  Y  V  *  K  K  R  G  Y  W  S  L  F  *  G  F  P  F  K  E  L  Y  F  L  C  S  F  C  K  L  G  *  K  L  E  G  *  N  V  Q  V  I  C  G  V  W  Q  L  L  M  H  L  A  L  S  L  S  A  F  T  Q  R  V  K  R  I  L  H  P  E  V  M  L  Q  A  W  R  R  R  G  F  S  S  R  R  F  S  R  R  H  L  L  Y  L  K  T  F  *  V  K  T  V  I  T  R  C  S  C  A  L  T  I  T  L  L  R  F  P  E  I  V  Y  K  V  T  L  E  L  A  Y  S  S  L  H  V  L  I  I  S  C  M  R  V  K  F  G </first_frame>
            <second_frame>  P  T  A  E  T  S  S  F  S  S  A  F  F  S  S  F  F  S  A  K  I  P  I  V  *  F  L  P  F  T  I  S  S  R  *  V  W  I  G  R  F  Q  R  F  T  I  *  A  I  T  E  G  *  T  K  C  A  F  F  *  T  R  L  *  C  C  L  P  Q  K  *  K  *  C  A  T  V  P  I  *  V  Y  D  W  *  *  N  R  E  H  P  E  N  A  A  F  C  S  T  W  Q  *  S  I  C  R  *  L  L  S  P  G  P  P  C  K  E  S  S  *  V  *  V  K  I  S  L  L  S  K  *  G  T  V  F  S  V  T  *  *  C  R  I  T  A  S  S  S  C  *  C  S  G  A  G  V  I  F  F  H  P  Q  A  S  S  T  S  *  S  *  S  T  R  L  C  L  H  *  Q  Q  C  *  P  E  D  I  *  E  T  L  G  T  G  A  N  A  G  S  *  N  Y  N  R  R  W  F  L  S  S  H  *  G  R  *  H  *  Q  A  P  S  V  *  S  A  P  R  L  W  C  S  A  Q  A  E  A  T  D  P  A  G  R  H  G  R  L  T  S  T  S  *  S  A  W  *  R  W  K  F  C  R  A  Y  S  *  R  *  H  C  I  S  M  V  G  V  S  S  Q  G  P  E  S  H  V  K  V  S  S  A  S  S  A  W  Q  *  A  C  Q  N  S  L  Y  G  N  F  P  P  F  E  V  F  V  W  R  S  S  T  *  C  W  S  S  *  N  H  H  *  S  C  K  S  S  L  *  M  C  H  S  H  G  P  *  F  T  E  C  L  S  C  C  C  C  V  F  L  R  T  T  T  S  S  P  S  W  K  P  C  W  R  W  S  F  Y  Y  F  K  I  C  S  *  R  G  H  S  S  I  N  *  F  *  G  C  *  Q  F  Q  H  A  *  S  C  P  L  A  G  I  F  *  C  L  F  W  F  T  Y  K  V  L  S  E  Q  V  *  Q  Y  H  A  I  D  S  S  T  I  P  A  G  C  *  N  Y  W  C  R  G  C  K  S  G  K  Q  R  N  A  C  G  T  F  T  C  *  S  S  T  Y  K  *  P  P  K  E  A  V  V  E  F  R  S  A  V  Y  A  C  Y  W  I  Q  F  S  W  W  K  Q  W  T  Y  R  S  R  I  C  K  L  L  A  E  M  V  R  F  H  N  S  *  C  S  C  T  S  V  G  L  K  V  T  F  W  L  L  F  A  R  T  C  S  A  S  A  S  V  Q  E  N  I  E  G  W  S  K  S  M  H  I  C  *  G  S  F  *  G  L  R  F  L  F  V  L  I  T  L  P  T  S  T  L  T  P  T  P  P  H  P  H  F  S  H  H  P  S  L  F  L  F  F  V  S  L  L  S  F  A  S  L  K  G  N  M  G  F  F  I  L  F  L  L  C  D  G  C  Y  L  T  L  P  C  I  M  S  E  R  N  G  V  I  G  H  S  S  K  V  F  H  S  K  S  F  I  F  Y  A  L  S  V  N  S  D  K  S  L  K  D  R  M  Y  R  *  F  V  E  F  G  N  S  *  C  T  W  P  S  P  S  L  L  S  R  R  G  *  K  G  F  F  T  L  K  *  C  C  K  L  G  G  E  E  G  S  A  L  A  V  S  V  G  D  I  C  Y  T  *  K  L  S  K  *  K  L  *  *  L  D  V  L  V  H  *  Q  L  L  C  Y  V  S  P  K  L  F  T  K  L  L  *  N  L  L  T  V  L  F  M  S  *  L  F  P  V  *  E  *  S  L   </second_frame>
            <third_frame>   Q  Q  Q  R  L  H  L  S  V  Q  P  S  L  A  H  F  S  A  L  R  S  Q  L  Y  N  S  F  P  S  P  S  H  L  G  K  Y  G  L  A  D  F  R  D  S  R  S  K  P  S  Q  K  V  R  Q  N  V  R  F  S  K  Q  G  S  D  A  A  C  H  K  S  E  S  N  V  P  Q  F  R  S  K  Y  M  T  G  D  E  I  E  S  I  L  K  M  Q  H  S  A  A  H  G  N  D  P  Y  V  D  D  Y  Y  H  Q  A  R  L  A  K  K  A  A  E  S  R  S  K  Y  R  F  C  P  N  K  E  Q  S  S  R  S  R  N  S  A  E  S  Q  P  H  L  H  V  D  A  Q  G  R  V  S  F  S  S  I  R  R  P  R  P  L  L  E  V  D  P  P  G  F  V  C  I  D  S  S  A  D  Q  K  I  S  E  R  P  L  E  Q  E  P  M  L  A  A  R  I  T  I  E  D  G  F  Y  L  L  T  E  V  D  D  I  D  R  L  L  Q  F  S  Q  P  Q  D  C  G  A  Q  L  K  R  K  R  Q  I  L  L  E  G  M  A  A  S  L  Q  L  V  D  P  L  G  K  G  G  S  S  V  G  L  T  P  K  D  D  I  V  F  L  W  L  V  S  L  P  K  G  R  N  L  M  S  R  Y  L  Q  L  L  L  P  G  N  E  L  V  R  I  V  C  M  A  I  F  R  H  L  R  F  L  F  G  G  H  P  P  D  V  G  A  A  E  T  I  T  D  L  A  K  V  V  S  K  C  V  T  L  M  D  L  N  S  L  S  A  C  L  A  A  V  V  C  S  S  E  Q  P  P  L  R  P  L  G  S  P  A  G  D  G  A  S  I  I  L  K  S  V  L  E  G  A  T  H  L  L  T  D  S  K  A  A  S  S  F  S  M  P  N  P  A  L  W  Q  A  S  F  D  A  F  F  G  L  L  T  K  Y  C  L  S  K  Y  D  S  I  M  Q  S  I  L  A  Q  S  Q  P  D  A  E  I  I  G  A  E  A  A  R  A  V  S  R  E  M  P  V  E  L  L  R  A  S  L  P  H  T  N  D  H  Q  K  K  L  L  L  N  F  A  Q  R  S  M  P  V  T  G  F  S  S  H  G  G  S  S  G  H  I  D  P  E  S  V  S  C  *  L  R  W  *  D  F  I  I  A  S  A  V  V  H  L  *  V  S  R  L  L  S  G  F  F  L  P  E  H  V  L  L  Q  H  Q  S  R  R  T  *  K  A  G  A  R  V  C  I  Y  V  R  G  L  F  K  A  *  G  S  S  S  S  *  *  L  F  P  P  P  P  S  P  P  P  H  L  T  P  I  S  P  T  I  L  P  C  F  F  S  L  S  H  F  F  L  L  L  H  *  R  E  T  W  V  S  L  S  F  S  F  Y  V  M  G  V  I  L  L  Y  R  V  L  C  L  K  E  T  G  L  L  V  T  L  L  R  F  S  I  Q  R  A  L  F  F  M  L  F  L  *  T  R  I  K  A  *  R  I  E  C  T  G  D  L  W  S  L  A  T  L  D  A  L  G  P  L  P  L  C  F  H  A  E  G  K  K  D  S  S  P  *  S  N  V  A  S  L  E  E  K  R  V  Q  L  S  P  F  Q  *  E  T  F  A  I  L  E  N  F  L  S  E  N  C  N  N  S  M  F  L  C  I  N  N  Y  S  V  T  F  P  R  N  C  L  Q  S  Y  F  R  T  C  L  Q  F  S  S  C  L  D  Y  F  L  Y  E  S  E  V  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58455" stop="56950"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1503</number_coding_nucleotides>
                  <number_encoded_amino_acids>501</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQQRLHLSVQPSLAHFSALRSQLYNSFPSPSHLGKYGLADFRDSRSKPSQKVRQNVRFSKQGSDAACHKSESNVPQFRSKYMTGDEIESILKMQHSAAHGNDPYVDDYYHQARLAKKAAESRSKYRFCPNKEQSSRSRNSAESQPHLHVDAQGRVSFSSIRRPRPLLEVDPPGFVCIDSSADQKISERPLEQEPMLAARITIEDGFYLLTEVDDIDRLLQFSQPQDCGAQLKRKRQILLEGMAASLQLVDPLGKGGSSVGLTPKDDIVFLWLVSLPKGRNLMSRYLQLLLPGNELVRIVCMAIFRHLRFLFGGHPPDVGAAETITDLAKVVSKCVTLMDLNSLSACLAAVVCSSEQPPLRPLGSPAGDGASIILKSVLEGATHLLTDSKAASSFSMPNPALWQASFDAFFGLLTKYCLSKYDSIMQSILAQSQPDAEIIGAEAARAVSREMPVELLRASLPHTNDHQKKLLLNFAQRSMPVTGFSSHGGSSGHIDPESVSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56785" stop="56465"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLRFLFVLITLPTSTLTPTPPHPHFSHHPSLFLFFVSLLSFASLKGNMGFFILFLLCDGCYLTLPCIMSERNGVIGHSSKVFHSKSFIFYALSVNSDKSLKDRMYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="56282" PGL_stop="56546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56282" e_stop="56546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="56282" e_stop="56546" e_length="265"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56282" stop="56546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAGTTTTCACTTAGAAAGTTTTCAAGTATAGCAAATGTCTCCTACTGAAACGGCGAGAGCTGAACCCTCTTCTCCTCCAAGCTTGCAACATTACTTCAGGGTGAAGAATCCTTTTTACCCTCTGCGTGAAAGCAGAGAGGGAGAGGGCCAAGTGCATCAAGAGTTGCCAAACTCCACAAATCACCTGTACATTCTATCCTTCAAGCTTTTATCCGAGTTTACAGAAAGAGCATAAAAAATAAAGCTCTTTGAATGGAAAACC</gDNA_template>
            <first_frame> L  Q  F  S  L  R  K  F  S  S  I  A  N  V  S  Y  *  N  G  E  S  *  T  L  F  S  S  K  L  A  T  L  L  Q  G  E  E  S  F  L  P  S  A  *  K  Q  R  G  R  G  P  S  A  S  R  V  A  K  L  H  K  S  P  V  H  S  I  L  Q  A  F  I  R  V  Y  R  K  S  I  K  N  K  A  L  *  M  E  N  </first_frame>
            <second_frame>  Y  S  F  H  L  E  S  F  Q  V  *  Q  M  S  P  T  E  T  A  R  A  E  P  S  S  P  P  S  L  Q  H  Y  F  R  V  K  N  P  F  Y  P  L  R  E  S  R  E  G  E  G  Q  V  H  Q  E  L  P  N  S  T  N  H  L  Y  I  L  S  F  K  L  L  S  E  F  T  E  R  A  *  K  I  K  L  F  E  W  K  T </second_frame>
            <third_frame>   T  V  F  T  *  K  V  F  K  Y  S  K  C  L  L  L  K  R  R  E  L  N  P  L  L  L  Q  A  C  N  I  T  S  G  *  R  I  L  F  T  L  C  V  K  A  E  R  E  R  A  K  C  I  K  S  C  Q  T  P  Q  I  T  C  T  F  Y  P  S  S  F  Y  P  S  L  Q  K  E  H  K  K  *  S  S  L  N  G  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56316" stop="56519"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMSPTETARAEPSSPPSLQHYFRVKNPFYPLRESREGEGQVHQELPNSTNHLYILSFKLLSEFTERA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="64110" PGL_stop="58815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64110" e_stop="63815"/>
            <exon e_start="62399" e_stop="62233"/>
            <exon e_start="60981" e_stop="60925"/>
            <exon e_start="60657" e_stop="60582"/>
            <exon e_start="59051" e_stop="58815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.995" e_score="0.993"/>
          <exon-intron don_prob="0.834" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="64110" e_stop="63815" e_length="296"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.995">
            <gDNA_intron_boundary i_start="63814" i_stop="62400" i_length="1415"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62399" e_stop="62233" e_length="167"/>
          </exon>
          <intron i_serial="2" don_prob="0.834" acc_prob="0.996">
            <gDNA_intron_boundary i_start="62232" i_stop="60982" i_length="1251"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60981" e_stop="60925" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60924" i_stop="60658" i_length="267"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60657" e_stop="60582" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60581" i_stop="59052" i_length="1530"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="59051" e_stop="58815" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64110" stop="63815"/>
              <exon start="62399" stop="62233"/>
              <exon start="60981" stop="60925"/>
              <exon start="60657" stop="60582"/>
              <exon start="59051" stop="58815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64100" stop="63815"/>
              <exon start="62399" stop="62233"/>
              <exon start="60981" stop="60925"/>
              <exon start="60657" stop="60582"/>
              <exon start="59051" stop="58865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64099" stop="63815"/>
              <exon start="62399" stop="62233"/>
              <exon start="60981" stop="60925"/>
              <exon start="60657" stop="60582"/>
              <exon start="59051" stop="59032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64099" stop="63815"/>
              <exon start="62399" stop="62233"/>
              <exon start="60981" stop="60925"/>
              <exon start="60657" stop="60615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64097" stop="63815"/>
              <exon start="62399" stop="62233"/>
              <exon start="60981" stop="60925"/>
              <exon start="60657" stop="60626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408961" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCCCCACCCCACACACCAACACAAACACGTAGACTATGTAATACGCTATGTCTCCTTCTCCTTTTCGTCTCTTTCTTTGAAAACCCTAGAAATCTCAGGTTTTTAAGGAAAAGAGGACTTTGATTCGGTGCAATTTTATCCCTTTCTCCTTTTTTTGTCGGTGTACATATGGGGTTATATTTCGCGGGATCCCCAATTTTCTAAGAAAAAATTGGTTGTTAGAAGTTGGTGCTATGGAGAGATCCAATAGCAGAGATTTCAAAGACTTGACTAGCTCCTCTGGCTCCATCTCAG : ATGGTGCCCTCTTTGATGCATCACAATATGCATTTTTTGGGCGAGATATAGCGGAGGAAGTTGAATTGGGTGGTTTAGAGGACGGACAAGACAATAGTGATCTGGGTGTTGGAGGTGGATTAGGTGATGACGAGATACAGGAGTATCATTTATTTGAGAAAGACGAG : GGATCTGTGGTGGGCTCATTATCGGACATAGATGATCTAGCAACGACATTTTCAAAG : TTGAACAGAAATGTCACTGGACCAAGGCATCCTGGTGTTATTGGTGACCGTGGATCAGGCTCTTTTTCAAGGGAAA : GTTCATCTGCAGCTGATTGGGCGAAAGAAGCAGACTTTCATGATTGGTTTGATCAGCATTTATCTGACACTGAATGTTACCAGGAAAGCAAAAAATGGTCTTCACAGCCACATATCTCTGCAGTGCTTGCAGAGTCAAAACCATTGTATAGAACATCCTCATACCCCGAGCAACCCCCACAACCTCAACAACTTCAGCACTACTCTAGTGAACCCATTTTACTACCGAAATCATCTT</gDNA_template>
            <first_frame> L  P  H  P  T  H  Q  H  K  H  V  D  Y  V  I  R  Y  V  S  F  S  F  S  S  L  S  L  K  T  L  E  I  S  G  F  *  G  K  E  D  F  D  S  V  Q  F  Y  P  F  L  L  F  L  S  V  Y  I  W  G  Y  I  S  R  D  P  Q  F  S  K  K  K  L  V  V  R  S  W  C  Y  G  E  I  Q  *  Q  R  F  Q  R  L  D  *  L  L  W  L  H  L  R :   W  C  P  L  *  C  I  T  I  C  I  F  W  A  R  Y  S  G  G  S  *  I  G  W  F  R  G  R  T  R  Q  *  *  S  G  C  W  R  W  I  R  *  *  R  D  T  G  V  S  F  I  *  E  R  R   : G  I  C  G  G  L  I  I  G  H  R  *  S  S  N  D  I  F  K   : V  E  Q  K  C  H  W  T  K  A  S  W  C  Y  W  *  P  W  I  R  L  F  F  K  G  K :   F  I  C  S  *  L  G  E  R  S  R  L  S  *  L  V  *  S  A  F  I  *  H  *  M  L  P  G  K  Q  K  M  V  F  T  A  T  Y  L  C  S  A  C  R  V  K  T  I  V  *  N  I  L  I  P  R  A  T  P  T  T  S  T  T  S  A  L  L  *  *  T  H  F  T  T  E  I  I   </first_frame>
            <second_frame>  F  P  T  P  H  T  N  T  N  T  *  T  M  *  Y  A  M  S  P  S  P  F  R  L  F  L  *  K  P  *  K  S  Q  V  F  K  E  K  R  T  L  I  R  C  N  F  I  P  F  S  F  F  C  R  C  T  Y  G  V  I  F  R  G  I  P  N  F  L  R  K  N  W  L  L  E  V  G  A  M  E  R  S  N  S  R  D  F  K  D  L  T  S  S  S  G  S  I  S   : D  G  A  L  F  D  A  S  Q  Y  A  F  F  G  R  D  I  A  E  E  V  E  L  G  G  L  E  D  G  Q  D  N  S  D  L  G  V  G  G  G  L  G  D  D  E  I  Q  E  Y  H  L  F  E  K  D  E  :  G  S  V  V  G  S  L  S  D  I  D  D  L  A  T  T  F  S  K  :  L  N  R  N  V  T  G  P  R  H  P  G  V  I  G  D  R  G  S  G  S  F  S  R  E   : S  S  S  A  A  D  W  A  K  E  A  D  F  H  D  W  F  D  Q  H  L  S  D  T  E  C  Y  Q  E  S  K  K  W  S  S  Q  P  H  I  S  A  V  L  A  E  S  K  P  L  Y  R  T  S  S  Y  P  E  Q  P  P  Q  P  Q  Q  L  Q  H  Y  S  S  E  P  I  L  L  P  K  S  S  </second_frame>
            <third_frame>   S  P  P  H  T  P  T  Q  T  R  R  L  C  N  T  L  C  L  L  L  L  F  V  S  F  F  E  N  P  R  N  L  R  F  L  R  K  R  G  L  *  F  G  A  I  L  S  L  S  P  F  F  V  G  V  H  M  G  L  Y  F  A  G  S  P  I  F  *  E  K  I  G  C  *  K  L  V  L  W  R  D  P  I  A  E  I  S  K  T  *  L  A  P  L  A  P  S  Q  :  M  V  P  S  L  M  H  H  N  M  H  F  L  G  E  I  *  R  R  K  L  N  W  V  V  *  R  T  D  K  T  I  V  I  W  V  L  E  V  D  *  V  M  T  R  Y  R  S  I  I  Y  L  R  K  T  R :   D  L  W  W  A  H  Y  R  T  *  M  I  *  Q  R  H  F  Q  S :   *  T  E  M  S  L  D  Q  G  I  L  V  L  L  V  T  V  D  Q  A  L  F  Q  G  K  :  V  H  L  Q  L  I  G  R  K  K  Q  T  F  M  I  G  L  I  S  I  Y  L  T  L  N  V  T  R  K  A  K  N  G  L  H  S  H  I  S  L  Q  C  L  Q  S  Q  N  H  C  I  E  H  P  H  T  P  S  N  P  H  N  L  N  N  F  S  T  T  L  V  N  P  F  Y  Y  R  N  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64019" stop="63815"/>
                    <exon start="62399" stop="62233"/>
                    <exon start="60981" stop="60925"/>
                    <exon start="60657" stop="60582"/>
                    <exon start="59051" stop="58816"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSQVFKEKRTLIRCNFIPFSFFCRCTYGVIFRGIPNFLRKNWLLEVGAMERSNSRDFKDLTSSSGSISDGALFDASQYAFFGRDIAEEVELGGLEDGQDNSDLGVGGGLGDDEIQEYHLFEKDEGSVVGSLSDIDDLATTFSKLNRNVTGPRHPGVIGDRGSGSFSRESSSAADWAKEADFHDWFDQHLSDTECYQESKKWSSQPHISAVLAESKPLYRTSSYPEQPPQPQQLQHYSSEPILLPKSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="73320" PGL_stop="72729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73320" e_stop="72729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="73320" e_stop="72729" e_length="592"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73320" stop="72729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTACGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAGCTTTGTTATTTTGGGATATTTTCTCTAATTTTTTTTGGCAATTTCAGCATAAGGACATTTCCCATAAGATCCACCTGCTATAGTGTCCAACACTGCTTTGTTACTATCATCTTGTCCCCGATAGAAGTATTCGTTTAGTGACTCATCATCTATACGGTGATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCTAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTATTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGCGTGCTAAGAAAACATCCCTTAGTTGGTTCCAAGTGAAGATTGAGTTGTATGGGAGTTCAGTGAACCATATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACTCTGAACCCTATTACATCTAAATCCAAATCAGGCCTCCCTACACAGCTTTTACACACTGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAGAGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</gDNA_template>
            <first_frame> T  T  K  V  F  L  P  V  S  D  F  L  V  L  Q  A  L  L  F  W  D  I  F  S  N  F  F  W  Q  F  Q  H  K  D  I  S  H  K  I  H  L  L  *  C  P  T  L  L  C  Y  Y  H  L  V  P  D  R  S  I  R  L  V  T  H  H  L  Y  G  D  L  E  H  F  S  R  M  R  *  I  Y  P  K  N  Y  *  L  T  L  L  V  V  P  Q  S  Y  S  L  C  L  C  G  L  V  S  W  R  P  D  S  S  V  L  R  K  H  P  L  V  G  S  K  *  R  L  S  C  M  G  V  Q  *  T  I  *  Q  P  L  P  S  V  R  E  E  T  L  *  T  L  L  H  L  N  P  N  Q  A  S  L  H  S  F  Y  T  L  P  L  P  *  L  Y  G  H  V  D  P  Q  R  V  A  L  K  T  N  L  W  Q  *  A  F  A  S  G  Y  *  L  P  Q  </first_frame>
            <second_frame>  L  R  R  C  F  S  L  Y  Q  T  S  *  Y  S  K  L  C  Y  F  G  I  F  S  L  I  F  F  G  N  F  S  I  R  T  F  P  I  R  S  T  C  Y  S  V  Q  H  C  F  V  T  I  I  L  S  P  I  E  V  F  V  *  *  L  I  I  Y  T  V  I  W  N  T  S  Q  E  *  G  E  S  I  L  R  T  T  N  *  L  S  W  *  C  H  K  V  I  H  S  V  F  V  V  *  F  L  G  D  R  I  V  A  C  *  E  N  I  P  *  L  V  P  S  E  D  *  V  V  W  E  F  S  E  P  Y  S  S  L  S  R  Q  *  E  R  K  H  S  E  P  Y  Y  I  *  I  Q  I  R  P  P  Y  T  A  F  T  H  C  P  Y  L  S  Y  M  G  M  W  I  L  R  E  *  P  *  K  Q  T  S  G  S  E  H  L  H  Q  A  T  S  Y  H  K </second_frame>
            <third_frame>   Y  E  G  V  S  P  C  I  R  L  P  S  T  P  S  F  V  I  L  G  Y  F  L  *  F  F  L  A  I  S  A  *  G  H  F  P  *  D  P  P  A  I  V  S  N  T  A  L  L  L  S  S  C  P  R  *  K  Y  S  F  S  D  S  S  S  I  R  *  F  G  T  L  L  K  N  E  V  N  L  S  *  E  L  L  T  D  S  P  G  S  A  T  K  L  F  T  L  S  L  W  F  S  F  L  E  T  G  *  *  R  A  K  K  T  S  L  S  W  F  Q  V  K  I  E  L  Y  G  S  S  V  N  H  I  A  A  S  P  V  S  E  R  G  N  T  L  N  P  I  T  S  K  S  K  S  G  L  P  T  Q  L  L  H  T  A  L  T  L  A  I  W  A  C  G  S  S  E  S  S  P  E  N  K  P  L  A  V  S  I  C  I  R  L  L  V  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72991" stop="72731"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAKKTSLSWFQVKIELYGSSVNHIAASPVSERGNTLNPITSKSKSGLPTQLLHTALTLAIWACGSSESSPENKPLAVSICIRLLVTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="81032" PGL_stop="80183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81032" e_stop="80183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="81032" e_stop="80183" e_length="850"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81032" stop="80517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80898" stop="80183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGCGACGGATCATCATAGTCACGACGAACCGTCATGGACTCCGTCATCCCATACTTATGCAATTTCTTCTGCTGCTCTTCTTCATTACCCTCGACGGCAAGAATGACGGACCGTCATAGGCACAATGGTCCGTCGAGGGTCTTCGTTCCAAAACACTTCAACTCTTCGAATATGGGTACTGGGATTACTTCTCTGAACTTCATAACGAACCTGCAGGACGGACCGTCATAGACACGACAGACCGTCAGAAGCTTCGTAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCATCACAAGCACAACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTTTGCATTTTTTCGCTCAAAATCTCTGCATTCAGCTTTGGATAGATTTCCTGCAAAATGAAAAGAAACTTATATAAAAATTAGCACAAAAATACTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACTGTGAAACCACGGTATATCAACACCCTTAACTTAAATTTGTTGTTTGTCCTCAAGCGACGCACTATGACTCAATACAAAATCTTTGTACAATAATATCCATGTTTTATCCTTTGCAATCATTTGGCTTTCTATCCCGATTAATCTCATCAAATCTATGCATGCTATTACTATAAGGCTTGAATTATGTGGGATCAGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCATCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTTAAAAGAAAATCCTACTTTTTCACACAATGATTTCAGTTTGAGTATAAGAATTAC</gDNA_template>
            <first_frame> S  R  R  I  I  I  V  T  T  N  R  H  G  L  R  H  P  I  L  M  Q  F  L  L  L  L  F  F  I  T  L  D  G  K  N  D  G  P  S  *  A  Q  W  S  V  E  G  L  R  S  K  T  L  Q  L  F  E  Y  G  Y  W  D  Y  F  S  E  L  H  N  E  P  A  G  R  T  V  I  D  T  T  D  R  Q  K  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  C  T  T  L  P  P  T  D  H  H  K  H  N  G  P  S  *  A  P  *  V  V  S  F  A  F  F  R  S  K  S  L  H  S  A  L  D  R  F  P  A  K  *  K  E  T  Y  I  K  I  S  T  K  I  L  L  D  T  L  N  L  R  K  K  Y  *  *  Y  C  E  T  T  V  Y  Q  H  P  *  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  I  Q  N  L  C  T  I  I  S  M  F  Y  P  L  Q  S  F  G  F  L  S  R  L  I  S  S  N  L  C  M  L  L  L  *  G  L  N  Y  V  G  S  E  H  D  T  D  S  P  C  T  N  T  Y  P  L  Q  F  L  I  E  V  L  T  I  P  V  L  Q  L  V  S  S  L  *  K  K  I  L  L  F  H  T  M  I  S  V  *  V  *  E  L  </first_frame>
            <second_frame>  R  D  G  S  S  *  S  R  R  T  V  M  D  S  V  I  P  Y  L  C  N  F  F  C  C  S  S  S  L  P  S  T  A  R  M  T  D  R  H  R  H  N  G  P  S  R  V  F  V  P  K  H  F  N  S  S  N  M  G  T  G  I  T  S  L  N  F  I  T  N  L  Q  D  G  P  S  *  T  R  Q  T  V  R  S  F  V  T  P  H  L  V  R  L  P  H  L  P  S  A  A  A  L  R  C  H  L  R  T  I  T  S  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  F  A  Q  N  L  C  I  Q  L  W  I  D  F  L  Q  N  E  K  K  L  I  *  K  L  A  Q  K  Y  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  R  Y  I  N  T  L  N  L  N  L  L  F  V  L  K  R  R  T  M  T  Q  Y  K  I  F  V  Q  *  Y  P  C  F  I  L  C  N  H  L  A  F  Y  P  D  *  S  H  Q  I  Y  A  C  Y  Y  Y  K  A  *  I  M  W  D  Q  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  S  R  C  *  Q  F  R  Y  C  N  *  C  P  H  F  K  R  K  S  Y  F  F  T  Q  *  F  Q  F  E  Y  K  N  Y </second_frame>
            <third_frame>   A  T  D  H  H  S  H  D  E  P  S  W  T  P  S  S  H  T  Y  A  I  S  S  A  A  L  L  H  Y  P  R  R  Q  E  *  R  T  V  I  G  T  M  V  R  R  G  S  S  F  Q  N  T  S  T  L  R  I  W  V  L  G  L  L  L  *  T  S  *  R  T  C  R  T  D  R  H  R  H  D  R  P  S  E  A  S  *  P  H  T  W  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  Q  A  Q  R  T  V  I  S  S  V  G  G  L  F  C  I  F  S  L  K  I  S  A  F  S  F  G  *  I  S  C  K  M  K  R  N  L  Y  K  N  *  H  K  N  T  F  G  H  T  K  L  K  E  K  V  L  I  I  L  *  N  H  G  I  S  T  P  L  T  *  I  C  C  L  S  S  S  D  A  L  *  L  N  T  K  S  L  Y  N  N  I  H  V  L  S  F  A  I  I  W  L  S  I  P  I  N  L  I  K  S  M  H  A  I  T  I  R  L  E  L  C  G  I  R  T  *  H  R  L  T  M  H  *  H  L  S  S  S  I  S  H  R  G  A  N  N  S  G  I  A  T  S  V  L  T  L  K  E  N  P  T  F  S  H  N  D  F  S  L  S  I  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80912" stop="80682"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQWSVEGLRSKTLQLFEYGYWDYFSELHNEPAGRTVIDTTDRQKLRNPTLGQTSPSSFSSCTTLPPTDHHKHNGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81013" stop="80801"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRRTVMDSVIPYLCNFFCCSSSLPSTARMTDRHRHNGPSRVFVPKHFNSSNMGTGITSLNFITNLQDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0255N21.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80800" stop="80588"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRQTVRSFVTPHLVRLPHLPSAAALRCHLRTITSTTDRHKLRRWSLLHFFAQNLCIQLWIDFLQNEKKLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 122 chains have been computed
$ 
$ memory statistics:
$ 38176 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2120 bytes was the average size of a spliced alignment
$ 10424 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2084 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 152 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:12:10
-->
