<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:11:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0285M20-fJXQq/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0285M20-fJXQq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0285M20-fJXQq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601351" ref_strand="+" ref_description="SGN-U601351 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gcgcaatgcttgactcggcagtgtctttttctccctctctccctcatcatgtaggttgagaaatctccttccctcgcttgtcctttatcctagaatcgaatgactcccttcattgctcctttaacgattgtacaaattggtacaattgacagctctaaaaacttatcggggtagagcaatttgaatttcaaaaattttaatttgaaattccttcaaccagatttctccccttttacaaccctaattttcatctataaatagctccttctttcttcgttatttagtttggtctatcgctgaaagaaaatgataaaaaattcggaaaagtttgcagagaacaaagaaagggtcggagaaatacagagaagaggttggcaattcaaaaatagagaaagaaaaaaacacaactaaacaactacaaggtatataagaaatacacttgaaagagagagaaaggagttagtttcagtccttctagcttgatcaccattgttctttaagttcgttcaagttttagatgctgcctaggcttcttgtttcctgtctagcctgggttttggtggtgaaagatcattgccctccttgctcatcccgtcctagttcgctgcccagaaaaaggaaatctgtctaaaatatgaatgcggaggttttttagcaagaaatacagaaaaaaccacatacggagcttgtgacggttcgtcgtggtcatgacggtccataggtggcagcgtagtgcagctgctgaaggaagatggggaatttttaccaagtgtggagttacgaagtgcgtgatggaccttcgtagccatgatggtccatcctgctggttcgtcatgatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0285M20-fJXQq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0285M20.1" temp_strand="+" temp_description="C00HBa0285M20.1  CU928469.6 htgs_phase:3 submitted_to_sgn_as:C00HBa0285M20 sequenced_by:sanger upload_account_name:uk">
        <position start="23121" stop="35788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23420" g_stop="24037" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24038" i_stop="35264" i_length="11227">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35265" g_stop="35488" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="842" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0285M20.1" gen_strand="+" ref_id="SGN-U601351" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0285M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23420" e_stop="24037"/>
          <exon e_start="35265" e_stop="35488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAAGGCTTGACTCGGCAGTGTCTTTTTCTCCCTCTCTCCCTCATCATGTAGGTTGAGAAATCTCCTTCCCTCGCTTGTCCTTTATCCTAGAATCGAATGACTCCCTTCATTGCTCCTTTAACGATTGTACAAATTGGTACAATTGACAGCTCTAAAAACTTATCGGGGTAGAGCAATTTGAATTTCAAAAATTTTAATTTGAAATTCCTTCAACCAGATTTCTCCCCTTTTACAACCCTAATTTTCATCTATAAATAGCTCCTTCTTTCTTCGTTATTTAGTTTGGTCTATCGCTGAAAGAAAATGATAAAAAATTCGGAAAAGTTTGCAGAGAACAAAGAAAGGGTCGGAGAAATACAGAGAAGAGGTTGGCAATTCAAAAATAGAGAAAGAAAAAAACACAACTAAACAACTACAAGGTATATAAGAAATACACTTGAAAGAGAGAGAAAGGAGTTAGTTTCAGTCCTTCTAGCTTGATCACCATTGTTCTTTAAGTTCGTTCAAGTTTTAGATGCTGCCTAGGCTTCTTGTTTCCTGTCTAGCCTGGGTTTTGGTGGTGAAAGATCATTGCCCTCCTTGCTCATCCCGTCCTAGTTCGCTGCCCAGAAAAAGGTATGGTATTTTTCTTCACAATGTTCTTTCCACCTCTTCTTCTATTTCAGAGAATCATTCTAATGATTGAAAATTTTATTTAGCTTAGTTTCTTGTTGCTGTTGTTATTAAGCGGGTATGTGTCACGAACCGACCGCACCCCCAAGTCGTAACTCAATATATTCAACCTCGAAAAGGTCTTATACAAGACCTTATCATTCATTCATCATACATGCATAAAAGTAGTGCGGAACTAAAACATTTCTCAAGTAAGACAACCATTTGAAATATTATTCATAAAAGGATGGAACATTAAGTCTCGATATATTCAACTTAGGCACGTCTCAACATATAGAGACACATCCCTTGTACAATCAAAAGAAAACTATTAGAAGTCTTAGATGAATTAAAAGAAACTTCTAAGATAAGTGTCCTTGAATCATTGTGGACATACCAAAGAATGAAGATAGCAAATCCAATCACTTCAATCTAGGAATGATCCTTTAGTCACCTCAACCTACAAATGATGTAAAAAGATGAAGAAGATGGTGTTAGTACAAATATACACTTAGTATGACCATGCAAAATCATGTTAAAAGGACATTTAGTTGAAGTATATGCTATTCATGCCATTTTGGTAAAAACATCATACGTCAAGTATAAGAGACACATTACAGGTCAATATTCACATATAAGACAATATTAACATCATGAGCATCTTTTTCAAGTGGTCTATTTCATCACCCTTGACCCTCCACTTAAGGTTATCCTAAGAACCACCTCAGGGACACATGCCGAGGCACCCCATGCTAACTCTTCATACCACACCTGGGTGTTCCTTAAGACTATAATAGATAAGGACTTCACCCTTTTCAACTTAAACCAATATTCAACATTTATTTAAGACATTTGGGAAGACATTCATGCATTTATGAGACTTCACATAATAGTCATTAAATATTTCGGGAACTAATTTTAGTATCTTCAAGACCTACTCGTTCCATGTGTAGATAACAACAAATACTACTACCTACACGTTGTAGATCCTATCCAATAATAGGGTTATGCATTAATCGAGATAGACCACACTAGCTAGGTATGAAATTCGGTATCATACGACCGCACACCGTGGAAGGTGTTCTACTTGCCAAGGGTAGAACTAGTACACAACCCATGTAGGCACATAATTTAGGGGATATACAAAGATGTTCATTGGCCTTTTCTTTGGGAAGAGACACCATCTTAACAATATCCACTCGCTAGCCTTAGTTCCTATAGAGTATTTCAGTCACGTGTATGTACCAGAGAGCACATCATCATCAGGTCTATCGACCCATAATTCTACCAAGAAGGGCTCCATGTTAGGTCGACTTATCAAGGTCCATTAAGGATAGCTCAATGACTTTTTTAGAGGAGGTTTCTACCATTCCAGCCCACCATATATTAGTCTATCATTTCACATAAGAAGCATACATCGACAAAAGGTCTACCACTTTAAGGATTTACATTCACTTAGGGATCTACACTCGTAATGAAGGGGAACCATACTTAGGTCTACGATTTCAAGACATAGCCGAGAAGCCTCATTAATCATTCATAGAAAGATTACTCAAGGAAAGGATGCCTAAGCCTACCAAGTCAAGAGATCACATCCAAAAATCTTCAAGCATAAAGGAAAGACACGTAAGTTTCCTAATCAATATATAACATCACATATTCAAACCCTTCACATTATAACATCATCACATATGAGCATTGAGAGGGAATCATACTTTAAATCACAATACAGTAATGTCTTTATCAAGCTAACTTTGAGATTGCATGAACAAATTCGCATTATACCTTCATAAATACATTGACATGATAATACTTCAATTCACCATATAATTCCTTCAAGGCTATGATTACAATACATAAACTATAAGTAAACGCCTCCACTATAAGTGGATTAAACCATATAAGAACACTTTCATTATAACAAGAGGATTAGGTCAACTTACCCTTCATCCAATCAATGACCACCATTACGCAAGTCTCCAACAATTCTTCGTAGGATAGGTATAGATAACAATAGATACCAACAATACAATACAATATAATCACAATTCTAACAATATCCAATCATAATCATAAAACCCACTTTATAAGCCAACTTTTTAGGAATTTAGTGAAATAATGGGTTTATAGAGTTTTTCACCTTAAAATCATAAATTATCAATCATCATAATCATAGTTTATCAATTGAAAATGTATGATGCAAGAACTAATGAGTTTGAGTAAGAATTGAGGGTTTTTACAATATTTGGAAACTTGAAAACTATTTTGAGGTTTACTCTAGGTTGGAACTTTCCCTATATAACGGATCACTATACCTTAAAATTTTAAAGACCACGTTTCAGAATAAAGCACTTCAAATCTCGTCTTCTAGCTTGAAATTGTTCTTGAGCTTCAATGATGTTCTAGAGAGAACACTTTGAGTGAGGGGTTTTGATTTGGAAGAATGAATTCTAAATGGAGGTTTATTTTTTTTGATAGACTTAAAGTGCCCTAGAATACATAAATAAACATACCCATATTTAACCAAACCACGCTTGGCTTGGCCGTGTCTCAAGACAAAACTACAGAGGTTACTTACGAGCCCCACCTTCAGACCGTAGGTGAGGTTACAGACCATCTTGTTCCTCGTGGTATTGATCAAAGACTTCTCCATATGAGTTAAGGATCCCTAGTCTAATATTCACCTACGGATCTCACTTATGCATGTAAGTGGACCTACTTGACATAAGTCTTGTCCATAGGTCACCACTTTTTTGACAGTTTTGGGGTTCAAATTTGGGTCTTCCTCAAGGACCCTTAAGGTGGGCCTTGGGGAGTCCGACCCATATGTTTAAACCCTAAACATTTTTATCTTAATTGGTTCTCTTTTACAAGATTCAGACTCCAAACAACACACCAATCCAATGACAACACACTAGAACACACTAGCACTCAAACGACTAATTTTTGAATGTCATGGATGTCTTTTGACATTTAACTTCAAAAATTACCAACTGACTTCTAAAGTCATTTGTAGTCATTTATACTGGTTTACTAACTCATGAAACACATGTGAGGCACTAGTTCACCCTATTTTGTTTTAGGGTCATTACAATATCCCCCACTAGCGAACATTAAACCTCGAATGACACTTAAAACACATAAAGATAATGACTCAAGAACATCCACCCACAATCATGCATGCAACAATATAATAGACAATCTACAAATCTTGGATAAAACATCAACTTCACATAAAAGACATCAAACAGAACAAGAAGGTAGGAATAACATCGACAAACTCATCATGCATCAAGACTTCTCATTCCTCACTTCATATTGGTGGAACTTCCTTCTCCATATATCAAAACACTCACTTCAACATTATTAAGCACATCATACAAATTTCTCATAAAAGCACAATCATGCAACATTTTCAAGAGCACTTTTTAGCATGTTCAACGTTCCAATTCATGCAACATTTATGAAATTTGTCACATACTCACATCAACATGAGGAACACCACTGTATGAACACTCATTTTCTCTTTTAACAAGAATTCAACTAGAAGATGCATAACATAGGGAGAACATATGAGAACTTATTTTTTTCACACAAGACTCTAACACATGCATAATACTGCTAGAAATATCTAAGTCTCAAGATTGAATAAGATAGAATAAAAAGAGAAAAGAACTTCGAAACTCTCAACGACTTCTCCAAATCAACAAAACATCCCCCACTTGGGTAAAACAAAACTAAGGCTATCATGAACCATACATAAGAATCTCATCACACAAAACATAGAACTATAATTTACCAGCACCTTTTTCTGGATTTGCTTCCTTTTTATCTTAGAGAGAATAGAAAAGAGTCTCCATTTCATTATCAAGATTCGGGCCACTAGTGATGCCTAATTGGCCTCCCTTCCTCTCGCCGCAAAAGTATGACAATCTCTCACCTTGTGGTCATTGTTTACGAATCTCTAGCAACCATTATTAACATAAAGACATTTCCCATTGTGCCTTTTACCACAAGTAGTGCAAGTAAGCTTTAAAAATTGAGAACTACCACATCTCTCTTGGTTAACCTTAGAATCACTAGAATAATCTTGATTTGGAGCTCTCTTTTTTAACATAGATTGAACTTCTTATCTGGTCTATCCCTCGTAACCTCTGTACCCCTCCTCTTAAACTTAGACTCCTCAATGGATTGAACATACACCATAAGCCTAGAAATGTTCATGTCATCATGGAGCATTGTCATATAGCACTCATCCTTCAAAAAGGTGGAAACGCCGATCACATACATACTCATGTCATCTTTAGGAGTAGACACCAAAGATGGACCATATTTATACAAAAAGGTAAACTTCAAAGAATACTCCTCCACACTCATGTTGCCTTATCTAAGTTTTATAAACTCCTCAACCATAACTTCTGTTTTCTCATGGGGAAAGTACTTATGAAGAAATGTTTTCTTAAACTCTTCCCAATCAATAGGACCCACTACAATCGGCATATTGTCTCTCCATGGAGTAAACCAGACTTGAGAAACCTCCTTCAATTGTTAGGAAGCAAACTCTGCCTTCTCCCTAGAAGATAATCCCATAACACTCACTATCTTATGCACACTATCACCCCCAAACTCAAGGGGCACAATTGGCTCCTAATGCCAAATATCAGGACCGAGGTGACCCTACTAAACCATTTTCTACTATAACATGGAAGACACATATAATCAAGAAATAAACAAGTATATATAGGCTTAAAATTAAGACCTTGACTGGCAAGGCCCCTGTTAACAGATTTATAGGATAAAGAACTATTCCCCAGAGTTCATATACATAAATAGCACACTAGAAAAAAAATTCATGATTGGGACATCGAGGCCAACTTGATATTTATACAAAAACTTAAAACATGTATATATCAAGAGATCAAAAAGTTCACAAGCTTCACAGACAAACAAACTAGACTAGCATGCCATAACGTATTTATGCAACCCACAAACTAGTCTGCAAGCCTATGTGTATAAAAAATTGTCGCGACAGGGGCCCCCGCCTAATCATAAATATATATACAACAAAATCTAACAAATCTCCCAACTCTGGCAGCTCTAAAGGAAATGGGATAGCCAATAAGATAGGTGTCAATCCTACTCCTTATGAGCTTTACTGGGTCGTGTGTCGCGACATGCATGCATGAATCCAGCACCCCAAACAATGGGGTGTCAGTACGAAATAATGTACGGTGTATAAGAGGCAATAAACTATGATCATGTATCCTACTATACTAGAATAATTCGATAAATAAATCAAGGATAAGATAAATTTACTTACCTATTCCTAAATCTAAACTTAAAAGAAATAATAAAACAACAACCTAACCAATCCCTTATAAGCTCGGTAGGTACAAACAACAAACAAGACCACCTACTCATGCCCCTATAAGCCGGAAGGTTCCAATCATTCTATATACATCTATCGGTAGTCTCGTAGCTACGTAGGTAGTCACATAGCCCTCTTAGGCATTTATATAGCCCCATACATACCACATGGATCTCTTAGGCAGTAACATAACTTATAGAAAACCCATATCCCTATTAGGGAACCACATGGCCCTGTAGGAAGCACATAGCTTTCTTAGGCGTCAATATAGCAATATATGCAATTCATAGCCCTTGTAGGCATCAATATAGCCATGTAGGCAACTCATACACCTTTTAGCCATCCATATAGCCCCGTATGTATATCATAGCCTTTCTAGACATAGATCACATTCCAGTAGCTAACCACAATAGCCCTAAGGGCAACAGTAACAATCCTATCGCTAAAAGAGAGAAATTTAATGGTAAAGAATCTTTACAAATATCCTCTAAGTCGTGTCCAACATAAGAACACTACTAACTGAATTTAATAATCCTTACAACGGAGGATTATATCAACTCAAGTAGACAACAATCAACAATCATGTCTATAAGTAAAACAAAGATAAAAACCCAATTACATTGTTCTGAAGCTTTAATGAAACATGACATATGAAGGTAATAGACTAAACAGACCTTTTTCACAAAATTCATGTGGTATAACAACATAACTAACAACCTTTCTCGATACTATAACAAGGTGGGACCATAATAAACACAAAATAATTGAAAATACCACAATAATTCGATAAAAGATATGTGTTTCGATTGTAAATTGGTATTTGCGACTTATGAAATCTAGTGTCGAAGAAATAAGGGTCTTACCTTGACTATAAGTTCGTAATACGCCTAAAAAATTTATAATATTCCAAAAACCCTGCTGTCCACACACAGAAGTATGATGTGCTAGGAAATTGATAAAAGAAATTATACCATGTTAACGAGATCAAAGCGTAGAACAATTTTGGCAATGACTTAAGGAACAAAAATCTGTAACTTGGATGATCCTAGAAGTGGATTTTGTGATTTTTATGGTTATTTACTAAGAAAAATGAAGAAAAAGATGAAGAAAATTTGAAGAAGATGATATATTTAAAGTTCCACAAATGTAAGGGACCCACCTTACCAGCCTGCTTGTGCAGTCTTGCGAAAACGCGAATATCTATTCTAAAGTCGTATGAACGAAAGGGTTGATGCGTTGGAAACTTGACTCGTAGACCTTATATTTCACAAGTAGTGGGCACCATAACTAATTATTGATTGGGTGAAAACCTCCGAGACACTTTACCCAAATTTAAGGCAAATTTTTATAAAGGAATTTGCGGTAACTTTCACCAACTTTTATTTTGCCACTTACCAAACTTCAAAATATGAGATATGATCGTTGAACGCTTAAATATCACATAACACATAATCCTTAATTTATTACCTACCCTCCTGATCTTTCAACAAATACAAGAGTCAACTTAGATGTTCCGTTAAATCCTTCCCCTGTTAGAAACATTTGTCCTCGAATGAAAAATATGATTTTTTGCGGTTATGTCCTTAAAAGATTCAAATTAATTAGGAAGAATATCCTTTGTATATGTGACTATCTAGGAACATGAAATTCAATCTTTATAAAGGAATTTGAGGTGACGTTCACCAACTTTTATTTTTCCACTTACCAAACTTCAAAATATGATATACAACTGTTGAACACTTAAATATCACATAACACACCATCTTTAATTTATTACCTACCTTGCTGATCTTTCGACAAATATATGAGTCGACTTAGATATTTCGAAAAAAGTTTGGGTGTTAAATCCTACAACCATTAGAAACATTTGTCATGCGGTTATGTGCTTAGGAGTTTCAAAATAATGAGGCATCATATCCTTTGTATATGTGACTATCTAGGAACATGAAATTCAAAAATTCTAACCTTAGGCATCTCACGTGCTCACCAAATAGCTAAGAACTATAGCTCCGCAATAACATTGCGAGGAAATACACAACAAAAACAACAACAATAAACAAATATATATATATATATATATATATAACTTATATGTCATCATCCTGGGTTATAAAACAGGTGAGGATACTTGGACTTCATGTCATCCTCAGCTCTTGTTTCTCCACAATACTTTAACCGAAGCTAGCTCTTTGGTTCTCAATTGACGGATCTTTTGATCTAATAAGGCAAATGTAATTTCCTCGTATGACAATTTTTTGTTATATTAACATCCTCAACTAGGACAACCCGAGAAGGGTCTCCTACGCACTTCTATAGCATCGATATGTGAAAAACTGGATGAACCCATTATAGCCCGAAAAGAAAATTATAGCTCATAATACACGTGTCCTATCCACTGAAGGATCTGATATGTCCCAGTGAATCTTTGAATAAGCTTGCCTTATTCACAAAATCTCATAACACCCTTCTCAAAAGATCTTTTTATGAATACCAAGTCTTCGACACAAAACTTTAAGTCCATTCGTTGCACATCTGAGTATGAATTTTGTCGGCTATGAACATTTAGAAACCTCTCCTAGATAAGCTTAACATATTCCAGTGTTTACTGATCTAAGTCTGGTCCATCAAAGTTTGACTAACCTACCTCGAACCATCGAATAGGGGACCTACATTTTTCCCAATACAAAGCCTCATAAGGTGTAATCCTAATGTTGGAATGATAAATATTATTGTTTGCGAACTCAATAAGAGGATAGTGGTCATTCCAACTTCCCTTGAAGTCTAGTAGGCACACCTATAACATTTCTTCGAGTGTCAAAATTGTGTAATCGTGATGGTTATCTATCTGAGAGTGAAAGGTTATACTAAGATTAACCTATGTCCCCAGTCCTTTTTGTAAGGACTTCCAGAAGTTAGCAGTAAATTGTGCTCCTCTATCATGGATAGTAGATATTGGGACACCGTGTATCCCAACAATATCTCTTATATATATCCCTTCATGTCTTTGTCCATAAAAGTAGCCCTAACTGGTAAGAAATGAGATGATGATGTTAGTCTATCAACAATTATTTAAATAGAGTCAAACTTGCAACGAGATCGAGGTACCATGTAATAAAATCCATAATAATTGCTTTCCATTTCCACAAAGTAATGTCTATCTTCAGAACTTGCCCAACAAGAATTTGGTGCTCACCCTTAACTTTTTGGAAGTTAGGACATTGTTCTACCAACTCAGCAACTTCCTTCTTCATCTCGTGCCACAAATAGATCTTCTTAATATCATGGTACATCTTCGTCCAATTAGGGTGAATAGAATAACAAGAATTATGAACCTTATCCATGATCCAATGTCGAAGCCGTGCAAAATTCAGAATACATAATCGACCGCTATATCTAAGGACTCCATCTCTAGATATATCAAATTTCAAAGAATGTTGATACTGAGGATTCTCTCTGAGCTGATCTAAGCTAGGATCCTTTTTTTTGTTGTGATTTTTCTTCTGCAACTATAGTTTATATGGTTGTGCTGAGTCATTACTTCACTATCTTCTGACTATAACAATGTGACTCCCAATCTAGCTAACTGATAAATCTCTCGTGCTAGATCACGTTTCTCAAAACCTAAATAGGATAAAATATTCATAGATCGTCGACAAAGGACATCGGCTACCACATTCGCCTTTCCTGGATGATATAAAATATCCACATCGTTGTCTATCAGTAACTCAAGGGATAGACGTTGTCACATATTTAACTCCTTATGTAGAAATATATATTGAAGGATTTTATGATCTGTGAAGATGTCAACATGACCGCCATACAAATAATGTCACAAAAGTTTTAACACATGCACAACTTCAGCCAACTCTAAATCATGGGTTGGATAATTTTCTCATGATTTCTCAAATGCATTAAAGCATATGTGATAAACTTACCTTGTCCCATTAGAACACATCCCAACCCGATACTAGAGCAACAAAGTACACTGTATAGCCTTCAAAACGCTCTGGAAATTCTAGAACTTGTGATGACATCAAGCTTTCCTTGAGCTCCTTGAAGTTATGCTCGCAAGCCTCAATCCTCTTGAACTTAGTAACCTTTTAAGGACAACTTCATAAATGGTTCTGAAAGTGAAGAAACCCCCTCTAAAAAGCTTATGTAGTACCTAACTAACCTAAGAAACTATGAACCTCTGTCGGTGTCATTGGTCTTCGCCATGTCTTTACAGCTTTAAACTTTTGTGTATCAACTGCAATGCATGCATCTGGTACAATTATGCCTAATAAAGCAACAAAGTCCAACAAAAACTCACACCTAGAAAACTTTGCATAAAGTTCTCGGTCTTGAAGAACCTGATCATTGATAAATAAACTCACAAACAAGTCTAGTAATATGCTAGTCATTAGGTCCATGAACACTTCTTGGGAATTATTTAATCCAAAAGACATTACCAAGAACTAAAATTGTCCATATTTGGTTCCAAAAGAAGTCTCTGGAACATCTTTTTCTTGAATATGTATCTTGTGCTACCTTGATGTTAAATCAATCTTTGAGAAACAGTCAACACCTTGTAAGTGATGAAACAAGTAATCGATCCTCTAAAGGGGATACTTATTCTTTATAGTCTCCTTATTCAGTTTTTTATAATCGATACACATTCTTAGAAGGTAATCTTTCTTCCTCACGAATAACACTCTGCACCCCTTGGTTAAACACTAGGACTGATAAAGACTCTATCCAAAAAGTATTTCAGTTGATATTTCAACTCCTTTAGCTCAGCATGATCCATTCTGTATTAAAGGATATTTATGGGATGTGTACCTCGCAGCATATCGATAGCAAAATCTCGTTTTGGAGGGATACTAGGGAGCTTGTTTGGAAATACATCTAGAAACTCATTAACTACTAAAATATACTTAAAAGCTAATGATACTTAGTCTATATAATGAATGTGAACAAAAAGATAAATACAACCCTTAATAATCATACTCCTTGTCTTAAGATAGGAAATAAACCTACCTTTAAGCAATGTTGTATCACATTTCAATTCTCAAACTACCTTTCTTGGGAAGTGGAATCTAACAATCTTTCTCAAGCACCGAACATTAGCATAAGAAGACGCTAACAAGTCCATACCCATCTCATGTCAAAATCGACTAGCTCTAGCTCTACGAGATATACAGAGGTATTAAGGTCAATAATTTCTATCGTATAACCTCGATAGACCCTCCTCACAACAATAAACTCACCAATTAGTGTATATACAATAAATGGTTGATCTAATGATTTTGCTACTATACATAACTTCCCCGCTATAAATAGAGAAGCATAAGATAGAGTAAATCTAGATTCTATCAAAGCATAAAACAATGGAATCCAACAATCAATGTAGTTGTCACAGCATCTCGTGATGACTCTAAGTCCGGTTGGTTGGCTAATGAATATGTACGATTATGTCCACTACCAGAAGAAGATGATCCCTCTTTACCTCTGTCTCTACCTCTACCTGCTAAAGTCTAGGATTCGCTCCTTATAAACTACGCTGATGAGGAGGAACCTACTACTGACCTGGTCGACTTACCTATACAACCCTGAACTATAGTTGGGTAGTTCCTCCACCCATGCCCCTACTTTCAACAAAAATAAAAACATGTGGAGCCCTGCCTACACTACCCAAAATGCATCCTACCGCATGTAGCGCAACTCGGTGGTGTTATCAGATATACCGTGGTTTCACGGTATTTTAAATACTTTTTCCTTAAGTTTAGTTTTTCCAAAAACCTTTTTGTAATAATTTTTATGTAAGTTTCTCTTTATTTGCAGGAAATCTGTCTAAAATATGAATGCGGAGGTTTTTTAGCAAGAAATACAGAAAAAACCACATACGGAGCTTGTGACGGTTCGTCGTGGTCATGACGGTCCATAGGTGGCAGCGTAGTGCAGCTGCTGAAGGAAGATGGGGAATTTTTACCAAGTGTGGAGTTACGAAGTGCGTGATGGACCTTCGTAGCCATGATGGTCCATCCTGCTGGTTCGTCATGATGATC</genome_strand>
        <mrna_strand>GCGCAATGCTTGACTCGGCAGTGTCTTTTTCTCCCTCTCTCCCTCATCATGTAGGTTGAGAAATCTCCTTCCCTCGCTTGTCCTTTATCCTAGAATCGAATGACTCCCTTCATTGCTCCTTTAACGATTGTACAAATTGGTACAATTGACAGCTCTAAAAACTTATCGGGGTAGAGCAATTTGAATTTCAAAAATTTTAATTTGAAATTCCTTCAACCAGATTTCTCCCCTTTTACAACCCTAATTTTCATCTATAAATAGCTCCTTCTTTCTTCGTTATTTAGTTTGGTCTATCGCTGAAAGAAAATGATAAAAAATTCGGAAAAGTTTGCAGAGAACAAAGAAAGGGTCGGAGAAATACAGAGAAGAGGTTGGCAATTCAAAAATAGAGAAAGAAAAAAACACAACTAAACAACTACAAGGTATATAAGAAATACACTTGAAAGAGAGAGAAAGGAGTTAGTTTCAGTCCTTCTAGCTTGATCACCATTGTTCTTTAAGTTCGTTCAAGTTTTAGATGCTGCCTAGGCTTCTTGTTTCCTGTCTAGCCTGGGTTTTGGTGGTGAAAGATCATTGCCCTCCTTGCTCATCCCGTCCTAGTTCGCTGCCCAGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCTGTCTAAAATATGAATGCGGAGGTTTTTTAGCAAGAAATACAGAAAAAACCACATACGGAGCTTGTGACGGTTCGTCGTGGTCATGACGGTCCATAGGTGGCAGCGTAGTGCAGCTGCTGAAGGAAGATGGGGAATTTTTACCAAGTGTGGAGTTACGAAGTGCGTGATGGACCTTCGTAGCCATGATGGTCCATCCTGCTGGTTCGTCATGATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0285M20-fJXQq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589884" ref_strand="+" ref_description="SGN-U589884 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0285M20-fJXQq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0285M20.1" temp_strand="+" temp_description="C00HBa0285M20.1  CU928469.6 htgs_phase:3 submitted_to_sgn_as:C00HBa0285M20 sequenced_by:sanger upload_account_name:uk">
        <position start="62242" stop="63556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62542" g_stop="63256" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0285M20.1" gen_strand="+" ref_id="SGN-U589884" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0285M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62542" e_stop="63256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTC-TCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACAGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACAGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCATACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTATGTAGGTGGTCTCTTCTGCAATT-TTCGCTCAAAATCTCCACATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCATAAACAAGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACAGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATATTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATTCGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAA-AAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0285M20-fJXQq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586898" ref_strand="+" ref_description="SGN-U586898 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cccccctcgagagagtgccaagaggcgtaggggccgatcagaggatgaggcacaagcaaagaagaaggagcgccgagagatggaggctgcgaggagagcctcgctgagacggaggcacaccaaatcagagcatcgcagatagcggatggggcgtctagctcccgcactgtagagatagcaagaggcactactgatggtgcggttgttgctgaggacatcactgagggtgtccagattgctgaggacaccactgagggtgtccagattgcagaggatgtgggttccaggaaaccggacccaccatcttgttaaatcgacggtgctttgcgccacaggtttgcttcacctaccactctaatatttagattttttatgcattggggacagttgcatgcttttttgttgggggtggggtaaatggaaagtgagtgttagggtgaagtctgagtagcccaactcactatcctcttttggggttttcttgcctgtgttctttttccccaaaagactgattactttttttgttgaaccgacacgttatatattttgtacatagtttaactctgaagcatgatggctaaaatgatatcctgataaaactggaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0285M20-fJXQq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0285M20.1" temp_strand="-" temp_description="C00HBa0285M20.1  CU928469.6 htgs_phase:3 submitted_to_sgn_as:C00HBa0285M20 sequenced_by:sanger upload_account_name:uk">
        <position start="65123" stop="63912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64825" g_stop="64211" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0285M20.1" gen_strand="-" ref_id="SGN-U586898" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0285M20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64825" e_stop="64211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCTCGAGAGAGTGCCAAGAGGCGTAGGGGTTGATCATAGGATGAGGCACGCGCAAGGAAGAAGGAGCGCCGAGAGATGGAGGCCGCGAGGAGAGCATCACTTGCTGAGGCGGAGGCACACCAAATCAGAACATAGCAGATAGCGGCTGGGGCGTCTAGCTCCCACACTGTAGAGACAGCAGGAGGCACTACTGATGGTGCAGTTGTTGCTGAGGACATCACTGAGGGTGTCCACATTGCTGAGGACACCACTGAGGGTGTCCAGATTACAGAAGATGTGGGTTCTGGGAAACCAGACCCACCAGCTTGTT-GATCGACGGCGCTATGCGCCACAGGTTTGCTTCACCTACCCCTCTAATATTTAGATTTTTTTTTATGCATTGGGGACAATTGCATGCTTTTTTGTTGGGGGTGGGGTAAATGGAAAGTGAGTGTTAGGGTGAAGTCAGAGTAGCCCAACTCACTATCCTCTTTTGGGGTTTTCTTGCCTGTGTTCTTTTTCCCCAAAAGACTAATTACTTTTTCTGTTGAACCGGCACGTTATATCTTGTGTACATAGTTTAACTCTGAAGCATGATGGCTAAAATGATATCCCGATAAAACTGGAAAATA</genome_strand>
        <mrna_strand>CCCCCCTCGAGAGAGTGCCAAGAGGCGTAGGGGCCGATCAGAGGATGAGGCACAAGCAAAGAAGAAGGAGCGCCGAGAGATGGAGGCTGCGAGGAGAG---C-CTCGCTGAGACGGAGGCACACCAAATCAGAGCATCGCAGATAGCGGATGGGGCGTCTAGCTCCCGCACTGTAGAGATAGCAAGAGGCACTACTGATGGTGCGGTTGTTGCTGAGGACATCACTGAGGGTGTCCAGATTGCTGAGGACACCACTGAGGGTGTCCAGATTGCAGAGGATGTGGGTTCCAGGAAACCGGACCCACCATCTTGTTAAATCGACGGTGCTTTGCGCCACAGGTTTGCTTCACCTACCACTCTAATATTTAGA---TTTTTTATGCATTGGGGACAGTTGCATGCTTTTTTGTTGGGGGTGGGGTAAATGGAAAGTGAGTGTTAGGGTGAAGTCTGAGTAGCCCAACTCACTATCCTCTTTTGGGGTTTTCTTGCCTGTGTTCTTTTTCCCCAAAAGACTGATTACTTTTTTTGTTGAACCGACACGTTATATATTTTGTACATAGTTTAACTCTGAAGCATGATGGCTAAAATGATATCCTGATAAAACTGGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0285M20-fJXQq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600497" ref_strand="+" ref_description="SGN-U600497 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|34761718|gb|AAQ82031.1| (e_value=3e-16) pol [Pisum sativum]; ">
      <seq>cggggatttagtgcttctattcaattccagattgcgcttgtttccaggcaaactcaagtccaaatggactggtccttacacggttacccaactattccctcatggagcagttgagttggaaacgaaggagggtgtgcggttcaaggtgaatggacagcgcataaaaatctatctcggacatgctgaatcggcgaatgaagtgatcgaggcataccatcttgatgaagtctgagtaatcaagtggccccagtcgtgccgcgacattaaatcaggcgcttgttgggaggcaacccaatacttatcgtctttttaataatggtagcatttttttctataaatgggttttaaatttgcaggcacatcaccaagaaattctgcagaaaactactccgcagtagccactgacggatacaacaacggaccgtcgtatgcatccgtcacaccaggtatgtatttctgtcatttttgaaattagggcgcatacgacggaacctacgatggggcgtcgcaagtgcgatggaccgtcgtcggggaaccgttgcgcgattaatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0285M20-fJXQq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0285M20.1" temp_strand="-" temp_description="C00HBa0285M20.1  CU928469.6 htgs_phase:3 submitted_to_sgn_as:C00HBa0285M20 sequenced_by:sanger upload_account_name:uk">
        <position start="68836" stop="67661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68536" g_stop="67961" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0285M20.1" gen_strand="-" ref_id="SGN-U600497" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.038" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0285M20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68536" e_stop="67961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGGATTTAGTGTTTCTATTCAATTCCAGATTGCGCTTGTTTCAAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTTGAGTTGGAAACAAAGGAGGGTGTGCGGTTCAAGGTGAATGGACAGCGCATAAAAATCTATCTCGGGCATGCTGAATCGGCGAATAAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTACCGCGATATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATTGTCTTTTTAATAATGGTAGCATTTTTTTTTCTATAAATAGGTTTTAAATTTGCAGGCACATCACCAGGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTAACGGATACAACGACGGACCGTTGCGAATGCAACGGACCGTCGTATGCATCCGTCATACCAGGTATGTATTTCTGTCATTTTTGAAATTAGGGCACACACGACGGAACCTACGACGGGGCGTCGCAAGTGCGACGGAGCATCGTCGGGGAACCGTCGCGCGATTAATGAAA</genome_strand>
        <mrna_strand>CGGGGATTTAGTGCTTCTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTTGAGTTGGAAACGAAGGAGGGTGTGCGGTTCAAGGTGAATGGACAGCGCATAAAAATCTATCTCGGACATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATCGTCTTTTTAATAATGGTAGCA--TTTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACCAAGAAATTCTGCAGAAAACTACTCCGCAGTAG-C-C--AC---T-----GACGGA----TAC-AA--CAACGGACCGTCGTATGCATCCGTCACACCAGGTATGTATTTCTGTCATTTTTGAAATTAGGGCGCATACGACGGAACCTACGATGGGGCGTCGCAAGTGCGATGGACCGTCGTCGGGGAACCGTTGCGCGATTAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0285M20-fJXQq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588586" ref_strand="+" ref_description="SGN-U588586 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|6691193|gb|AAF24531.1|AC007534_12 (e_value=1e-85) F7F22.17; (*ATH) ATMG00860.1 (e_value=6e-13) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|P20825|POL2_DROME (e_value=2e-37) Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol; ">
      <seq>ctctatgactctagtacctagcaaataggagcaaaatatctcaaaagcaaagactactgcgaggagttcatgctcagtcactgtgtagttcttctgggcttcatttagggctttactagcatagtaaattgggtgaaggattttgtttcttctctgtcccaatactacaccaagagccaccccactagcatcgcacattacctcaaatggacttttccaatccggagaaataatgataggtgcagacactaacttctcttttagctcactgaatgctttaagacaggactcatcaaaacaaaatttacattctttcttcagtaatttgcacaatgggtgtgcaatctttgaaaagtctttgatgaatctccgataaaaacctgcatgcccaagaaagcttctcacacctttcatagagatcggtgggggaagtctctctattacctcaactttagctcgatcaacctctattcccttttctgaaatgcgatgacccaacacaatacctttttttaccatgaaatgacacttttcccagtttagtaccagattgcagtcttcacatctcttaagaacctcagattaattggtcaagcatcgctcaattgaatcaccaaccacagaaaaatcatccataaaaacctctatagtatcctccaccatgtcagaaaatattgacatcatatatctctgaaaggttgcgggtgcattgcacaacctaaatggcattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0285M20-fJXQq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0285M20.1" temp_strand="+" temp_description="C00HBa0285M20.1  CU928469.6 htgs_phase:3 submitted_to_sgn_as:C00HBa0285M20 sequenced_by:sanger upload_account_name:uk">
        <position start="69541" stop="70874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69841" g_stop="70574" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0285M20.1" gen_strand="+" ref_id="SGN-U588586" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0285M20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69841" e_stop="70574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATAACTCTAGTACCTAGAAAATAGGAGCGATATTTCTCAAAAGCAAAGACTACTGCGAGGAGTTCTTGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGCTTTAATAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTATCATCGCATATTACCTCAAATGGACTGTTCCAATCCGGAGAAATAATGATAGGCGCAGACACTAACTTCTCTTTTAGCTCACCGGATGCTTTAAGACAGGATTCATTAAAACAAAATTTACATTCTTTCTCCAGCAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGATGAATCTCCGATAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTCACAGAGATCGGCGGGGGAAGTCTCTCTATTACCTCAACTTTAGCTTGATCAACCTCTATGCCCTTTTCTGAAATGCAATGACCCAACACAATACCCTCTTTCACCATGAAATGACACTTTTCCCAGTTTAGTACCAAATTGCAGTCTTCACATCTCTTAAGAACCTCAGACAAATTGGTCACACACCACTCGAATGAATCACCAACCACAGAGAAATCATCCATAAAAACCTCTATAGTTTCCTCCACCATGTCAGAAAATATTGACATCATACATCTCTGAAAGGTTGCGGGTGCATTGCACAACCCAAACGGCATTCTTC</genome_strand>
        <mrna_strand>CTCTATGACTCTAGTACCTAGCAAATAGGAGCAAAATATCTCAAAAGCAAAGACTACTGCGAGGAGTTCATGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGCTTTACTAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGCATCGCACATTACCTCAAATGGACTTTTCCAATCCGGAGAAATAATGATAGGTGCAGACACTAACTTCTCTTTTAGCTCACTGAATGCTTTAAGACAGGACTCATCAAAACAAAATTTACATTCTTTCTTCAGTAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGATGAATCTCCGATAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTCATAGAGATCGGTGGGGGAAGTCTCTCTATTACCTCAACTTTAGCTCGATCAACCTCTATTCCCTTTTCTGAAATGCGATGACCCAACACAATACCTTTTTTTACCATGAAATGACACTTTTCCCAGTTTAGTACCAGATTGCAGTCTTCACATCTCTTAAGAACCTCAGATTAATTGGTCAAGCATCGCTCAATTGAATCACCAACCACAGAAAAATCATCCATAAAAACCTCTATAGTATCCTCCACCATGTCAGAAAATATTGACATCATATATCTCTGAAAGGTTGCGGGTGCATTGCACAACCTAAATGGCATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0285M20-fJXQq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562615" ref_strand="+" ref_description="SGN-U562615 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>ggtgcatttctcccattggagacattagggggtttactcattatagaaactagtattgcttcccatataaatgtttgttccgtctccgctagttcttcttagcaacattagatgtgtcctcgaagatgtccttttttatcgaagtctttggttcaagcttagtcacttctccagaaataaagatggaattaccttgttgtacctcactttgcattatcttgatcacatccttgaatgttgcaatcttagcggtgcttcttttgttgcattcgcacactgctattcttgtatgaagttcatgaacagttgtttttagcgctgtaacaacattagtcaaagtagtctggatcattcatgcaatagaggtttataggtcatcaatcagaagatctacacactgagggactttgcaatttttttccatattttcttgcaacaagtttcttcatgttgacttttctaagtgtatttgttcacttgcgtacctccagttgctttccattgaggcgacattaactttcttgcaacttcagatcttgtcatacctacaaccacaagtatactcaaatgttgttaataatgttgaactgggttttggttgatatttcagctcactcaaactggagaacagcagatatgattaggtagacaaaattcaagatgtcaaatattgcaatttaatatgcatttatgagttaatcggttgatcgctcaataattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0285M20-fJXQq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0285M20.1" temp_strand="-" temp_description="C00HBa0285M20.1  CU928469.6 htgs_phase:3 submitted_to_sgn_as:C00HBa0285M20 sequenced_by:sanger upload_account_name:uk">
        <position start="95290" stop="93058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94990" g_stop="94590" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94589" i_stop="93680" i_length="910">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93679" g_stop="93358" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="723" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0285M20.1" gen_strand="-" ref_id="SGN-U562615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0285M20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U562615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94990" e_stop="94590"/>
          <exon e_start="93679" e_stop="93358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCATTTCTCCCATTGGAGACATTAGGGGGTTTACTCATTATAGAAACTAGTATTGCTTCCCATATAAATGTTTGTTCCGTCTCCGCTAGTTCTTCTTAGCAACATTAGATGTGTCCTCGAAGATGTCCTTTTTTATCGAAGTCTTTGGTTCAAGCTTAGTCACTTCTCCAGAAATAAAGATGGAATTACCTTGTTGTACCTCACTTTGCATTATCTTGATCACATCCTTGAATGTTGCAATCTTAGCGGTGCTTCTTTTGTTGCATTCGCACACTGCTATTCTTGTATGAAGTTCATGAACAGTTGTTTTTAGCGCTGTAACAACATTAGTCAAAGTAGTCTGGATCATTCATGCAATAGAGGTTTATAGGTCATCAATCAGAAGATCTACACACTGAGTAAGTTGCTGAATTCGGTAAATCATGACTTGTGTGATCTAAAACTGAGGTGCAATGTTAGCGGTAGGTTAATTTTTTATTGTAGAGGGAACTGACCATCTTGTATCAGTTGGATGGGCTTTTGACACTTTTACCTTAACCTGGTTCTCCTCCTGATCCTTTAGGTATTATTAGTCAATTCACTTGATGTTGGTGGATAATATAGGAGTGATTTTCATATCCTTCTAAGCTTTTTGAGGTACTTGAGCTTGCTTGCACAGTTTAGTGATCAAGACCGGGAAATTAACAGAAGTTTGGCGTTGTTTTGAGCATATGATGATTTTAGATGCTATAATATCCCCAAAGCTGAGTTGAATCCTTTCAATAATGCAGGCTAGACATGCAGATATATTCATTTTGTGAAGGCATGATTGAGCTATTGATAAAACTATACAAATATTGTGTTGCTACATTTAATGTTTTCTTTTTTGTAGCTGTGCTAGGTCTTAATCAATTCGAAGTATCATCTGAAATTAGGGGAGCTAACAAATTTCTCATGTTATCTGATGTTCCCATTTTGGTTTGGTGTTTGCATACATCCTCCATGTTTTTTGGAAGACCTAAAATAACATAAATACTGTCGGGATGGCACAGGAACACCCTCCCCGGTATTATCACAAAGTCAACTGGCCTGACTGTTTGTATGTGTTTTCTTCTAAATAGTATCATGGATTTTTAAGACGCGTAAAATTCTTGAACTAAACTTGGAATATATGAGCCACGAGACATAGTGAAAAGTTGGAAGTGATGATACCTCAGTATGCTCATAATTTCTGGATATCTATCAATCACCCCATCTATGGATAAGAGTTTCTCTTCAAGAATAATTCTTAACAATCAACTTTTTTTCTGTTTTTGATGTTTCTTGTAGGGGACTTTGCAATTTTTTTCCATATTTTCTTGCAACAAGTTTCTTCATGTTGACTTTTCTAAGTGTATTTGTTCACTTGCGTACCTCCAGTTGCTTTCCATTGAGGCGACATTAACTTTCTTGCAACTTCAGATCTTGTCATACCTACAACCACAAGTATACTCAAATGTTGTTAATAATGTTGAACTGGGTTTTGGTTGATATTTCAGCTCACTCAAACTGGAGAACAGCAGATATGATTAGGTAGACAAAATTCAAGATGTCAAATATTGCAATTTAATATGCATTTATGAGTTAATCGGTTGATCGCTCAATAATTGGT</genome_strand>
        <mrna_strand>GGTGCATTTCTCCCATTGGAGACATTAGGGGGTTTACTCATTATAGAAACTAGTATTGCTTCCCATATAAATGTTTGTTCCGTCTCCGCTAGTTCTTCTTAGCAACATTAGATGTGTCCTCGAAGATGTCCTTTTTTATCGAAGTCTTTGGTTCAAGCTTAGTCACTTCTCCAGAAATAAAGATGGAATTACCTTGTTGTACCTCACTTTGCATTATCTTGATCACATCCTTGAATGTTGCAATCTTAGCGGTGCTTCTTTTGTTGCATTCGCACACTGCTATTCTTGTATGAAGTTCATGAACAGTTGTTTTTAGCGCTGTAACAACATTAGTCAAAGTAGTCTGGATCATTCATGCAATAGAGGTTTATAGGTCATCAATCAGAAGATCTACACACTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACTTTGCAATTTTTTTCCATATTTTCTTGCAACAAGTTTCTTCATGTTGACTTTTCTAAGTGTATTTGTTCACTTGCGTACCTCCAGTTGCTTTCCATTGAGGCGACATTAACTTTCTTGCAACTTCAGATCTTGTCATACCTACAACCACAAGTATACTCAAATGTTGTTAATAATGTTGAACTGGGTTTTGGTTGATATTTCAGCTCACTCAAACTGGAGAACAGCAGATATGATTAGGTAGACAAAATTCAAGATGTCAAATATTGCAATTTAATATGCATTTATGAGTTAATCGGTTGATCGCTCAATAATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="23420" PGL_stop="35488"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23420" e_stop="24037"/>
            <exon e_start="35265" e_stop="35488"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="23420" e_stop="24037" e_length="618"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="24038" i_stop="35264" i_length="11227"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35265" e_stop="35488" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23420" stop="24037"/>
              <exon start="35265" stop="35488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGCAAGGCTTGACTCGGCAGTGTCTTTTTCTCCCTCTCTCCCTCATCATGTAGGTTGAGAAATCTCCTTCCCTCGCTTGTCCTTTATCCTAGAATCGAATGACTCCCTTCATTGCTCCTTTAACGATTGTACAAATTGGTACAATTGACAGCTCTAAAAACTTATCGGGGTAGAGCAATTTGAATTTCAAAAATTTTAATTTGAAATTCCTTCAACCAGATTTCTCCCCTTTTACAACCCTAATTTTCATCTATAAATAGCTCCTTCTTTCTTCGTTATTTAGTTTGGTCTATCGCTGAAAGAAAATGATAAAAAATTCGGAAAAGTTTGCAGAGAACAAAGAAAGGGTCGGAGAAATACAGAGAAGAGGTTGGCAATTCAAAAATAGAGAAAGAAAAAAACACAACTAAACAACTACAAGGTATATAAGAAATACACTTGAAAGAGAGAGAAAGGAGTTAGTTTCAGTCCTTCTAGCTTGATCACCATTGTTCTTTAAGTTCGTTCAAGTTTTAGATGCTGCCTAGGCTTCTTGTTTCCTGTCTAGCCTGGGTTTTGGTGGTGAAAGATCATTGCCCTCCTTGCTCATCCCGTCCTAGTTCGCTGCCCAGAAAAAG : GAAATCTGTCTAAAATATGAATGCGGAGGTTTTTTAGCAAGAAATACAGAAAAAACCACATACGGAGCTTGTGACGGTTCGTCGTGGTCATGACGGTCCATAGGTGGCAGCGTAGTGCAGCTGCTGAAGGAAGATGGGGAATTTTTACCAAGTGTGGAGTTACGAAGTGCGTGATGGACCTTCGTAGCCATGATGGTCCATCCTGCTGGTTCGTCATGATGATC</gDNA_template>
            <first_frame> S  Q  G  L  T  R  Q  C  L  F  L  P  L  S  L  I  M  *  V  E  K  S  P  S  L  A  C  P  L  S  *  N  R  M  T  P  F  I  A  P  L  T  I  V  Q  I  G  T  I  D  S  S  K  N  L  S  G  *  S  N  L  N  F  K  N  F  N  L  K  F  L  Q  P  D  F  S  P  F  T  T  L  I  F  I  Y  K  *  L  L  L  S  S  L  F  S  L  V  Y  R  *  K  K  M  I  K  N  S  E  K  F  A  E  N  K  E  R  V  G  E  I  Q  R  R  G  W  Q  F  K  N  R  E  R  K  K  H  N  *  T  T  T  R  Y  I  R  N  T  L  E  R  E  R  K  E  L  V  S  V  L  L  A  *  S  P  L  F  F  K  F  V  Q  V  L  D  A  A  *  A  S  C  F  L  S  S  L  G  F  G  G  E  R  S  L  P  S  L  L  I  P  S  *  F  A  A  Q  K  K  :  E  I  C  L  K  Y  E  C  G  G  F  L  A  R  N  T  E  K  T  T  Y  G  A  C  D  G  S  S  W  S  *  R  S  I  G  G  S  V  V  Q  L  L  K  E  D  G  E  F  L  P  S  V  E  L  R  S  A  *  W  T  F  V  A  M  M  V  H  P  A  G  S  S  *  *   </first_frame>
            <second_frame>  R  K  A  *  L  G  S  V  F  F  S  L  S  P  S  S  C  R  L  R  N  L  L  P  S  L  V  L  Y  P  R  I  E  *  L  P  S  L  L  L  *  R  L  Y  K  L  V  Q  L  T  A  L  K  T  Y  R  G  R  A  I  *  I  S  K  I  L  I  *  N  S  F  N  Q  I  S  P  L  L  Q  P  *  F  S  S  I  N  S  S  F  F  L  R  Y  L  V  W  S  I  A  E  R  K  *  *  K  I  R  K  S  L  Q  R  T  K  K  G  S  E  K  Y  R  E  E  V  G  N  S  K  I  E  K  E  K  N  T  T  K  Q  L  Q  G  I  *  E  I  H  L  K  E  R  E  R  S  *  F  Q  S  F  *  L  D  H  H  C  S  L  S  S  F  K  F  *  M  L  P  R  L  L  V  S  C  L  A  W  V  L  V  V  K  D  H  C  P  P  C  S  S  R  P  S  S  L  P  R  K  R :   K  S  V  *  N  M  N  A  E  V  F  *  Q  E  I  Q  K  K  P  H  T  E  L  V  T  V  R  R  G  H  D  G  P  *  V  A  A  *  C  S  C  *  R  K  M  G  N  F  Y  Q  V  W  S  Y  E  V  R  D  G  P  S  *  P  *  W  S  I  L  L  V  R  H  D  D  </second_frame>
            <third_frame>   A  R  L  D  S  A  V  S  F  S  P  S  L  P  H  H  V  G  *  E  I  S  F  P  R  L  S  F  I  L  E  S  N  D  S  L  H  C  S  F  N  D  C  T  N  W  Y  N  *  Q  L  *  K  L  I  G  V  E  Q  F  E  F  Q  K  F  *  F  E  I  P  S  T  R  F  L  P  F  Y  N  P  N  F  H  L  *  I  A  P  S  F  F  V  I  *  F  G  L  S  L  K  E  N  D  K  K  F  G  K  V  C  R  E  Q  R  K  G  R  R  N  T  E  K  R  L  A  I  Q  K  *  R  K  K  K  T  Q  L  N  N  Y  K  V  Y  K  K  Y  T  *  K  R  E  K  G  V  S  F  S  P  S  S  L  I  T  I  V  L  *  V  R  S  S  F  R  C  C  L  G  F  L  F  P  V  *  P  G  F  W  W  *  K  I  I  A  L  L  A  H  P  V  L  V  R  C  P  E  K   : G  N  L  S  K  I  *  M  R  R  F  F  S  K  K  Y  R  K  N  H  I  R  S  L  *  R  F  V  V  V  M  T  V  H  R  W  Q  R  S  A  A  A  E  G  R  W  G  I  F  T  K  C  G  V  T  K  C  V  M  D  L  R  S  H  D  G  P  S  C  W  F  V  M  M  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0285M20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="62542" PGL_stop="63256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62542" e_stop="63256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="62542" e_stop="63256" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62542" stop="63256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGGGTCTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACAGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACAGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCATACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTATGTAGGTGGTCTCTTCTGCAATTTTCGCTCAAAATCTCCACATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCATAAACAAGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACAGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATATTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATTCGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> R  G  S  R  F  K  I  L  Q  L  L  E  S  G  Y  R  D  H  F  S  D  L  H  D  E  P  A  G  Q  T  V  I  A  M  T  D  R  H  K  L  R  N  P  T  L  G  H  T  S  P  S  S  F  S  S  F  S  T  L  P  P  T  D  R  H  K  H  D  G  P  S  *  A  M  *  V  V  S  S  A  I  F  A  Q  N  L  H  I  Q  L  W  T  D  F  L  Q  N  K  E  K  L  I  *  K  L  A  *  T  R  L  S  D  T  L  N  L  R  K  K  Y  *  L  Y  R  E  T  T  V  Y  Q  H  P  Q  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  L  H  N  L  C  T  I  V  F  I  F  Y  P  L  Q  S  F  G  Y  Q  S  R  L  I  S  S  N  L  C  M  L  S  L  L  G  L  N  F  V  G  F  E  H  D  T  D  S  P  C  T  N  T  Y  P  L  Q  F  L  T  E  V  L  T  I  P  V  L  Q  L  V  S  S  L  *  N  K  I  L  I  F  H  T  M  I  S  V  *  V  *  G  L  </first_frame>
            <second_frame>  E  G  L  V  S  K  Y  F  N  S  W  N  L  G  T  G  I  T  S  L  I  F  T  T  N  L  Q  D  R  P  S  *  P  *  R  T  V  T  S  F  V  I  P  H  L  V  I  L  P  H  L  P  S  A  A  S  L  R  C  H  L  R  T  V  T  S  T  T  D  R  H  K  L  C  R  W  S  L  L  Q  F  S  L  K  I  S  T  F  S  F  G  Q  I  S  C  K  T  K  R  N  L  Y  K  N  *  H  K  Q  G  F  R  T  H  *  T  *  G  K  S  I  N  Y  T  V  K  P  Q  Y  I  N  T  L  N  L  N  S  L  F  V  L  K  R  R  T  M  T  H  Y  T  I  F  V  Q  *  Y  S  Y  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  I  L  W  D  S  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  P  R  C  *  Q  F  R  Y  C  N  *  C  P  H  F  R  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </second_frame>
            <third_frame>   R  V  S  F  Q  N  T  S  T  L  G  I  W  V  Q  G  S  L  L  *  S  S  R  R  T  C  R  T  D  R  H  S  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  Y  F  P  I  F  L  Q  Q  L  L  Y  A  A  T  Y  G  P  S  Q  A  R  R  T  V  I  S  Y  V  G  G  L  F  C  N  F  R  S  K  S  P  H  S  A  L  D  R  F  P  A  K  Q  R  E  T  Y  I  K  I  S  I  N  K  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  S  I  S  T  P  S  T  *  I  R  C  L  S  S  S  D  A  L  *  L  T  T  Q  S  L  Y  N  S  I  H  I  L  S  F  A  I  I  W  L  S  I  P  I  N  L  I  K  S  M  H  A  I  T  I  R  L  E  F  C  G  I  R  T  *  H  R  L  T  M  H  *  H  L  S  S  S  I  S  H  R  G  A  N  N  S  G  I  A  T  S  V  L  T  L  E  Q  N  P  H  F  S  H  N  D  F  S  L  S  I  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0285M20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62905" stop="63204"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYRETTVYQHPQLKFVVCPQATHYDSLHNLCTIVFIFYPLQSFGYQSRLISSNLCMLSLLGLNFVGFEHDTDSPCTNTYPLQFLTEVLTIPVLQLVSSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0285M20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62667" stop="62915"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTWSYFPIFLQQLLYAATYGPSQARRTVISYVGGLFCNFRSKSPHSALDRFPAKQRETYIKISINKAFGHTKLKEKVLIIP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0285M20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62542" stop="62757"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGSRFKILQLLESGYRDHFSDLHDEPAGQTVIAMTDRHKLRNPTLGHTSPSSFSSFSTLPPTDRHKHDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0285M20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62645" stop="62857"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTVTSFVIPHLVILPHLPSAASLRCHLRTVTSTTDRHKLCRWSLLQFSLKISTFSFGQISCKTKRNLYKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="64825" PGL_stop="64211"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64825" e_stop="64211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="64825" e_stop="64211" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64825" stop="64211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586898" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCCCTCGAGAGAGTGCCAAGAGGCGTAGGGGTTGATCATAGGATGAGGCACGCGCAAGGAAGAAGGAGCGCCGAGAGATGGAGGCCGCGAGGAGAGCATCACTTGCTGAGGCGGAGGCACACCAAATCAGAACATAGCAGATAGCGGCTGGGGCGTCTAGCTCCCACACTGTAGAGACAGCAGGAGGCACTACTGATGGTGCAGTTGTTGCTGAGGACATCACTGAGGGTGTCCACATTGCTGAGGACACCACTGAGGGTGTCCAGATTACAGAAGATGTGGGTTCTGGGAAACCAGACCCACCAGCTTGTTGATCGACGGCGCTATGCGCCACAGGTTTGCTTCACCTACCCCTCTAATATTTAGATTTTTTTTTATGCATTGGGGACAATTGCATGCTTTTTTGTTGGGGGTGGGGTAAATGGAAAGTGAGTGTTAGGGTGAAGTCAGAGTAGCCCAACTCACTATCCTCTTTTGGGGTTTTCTTGCCTGTGTTCTTTTTCCCCAAAAGACTAATTACTTTTTCTGTTGAACCGGCACGTTATATCTTGTGTACATAGTTTAACTCTGAAGCATGATGGCTAAAATGATATCCCGATAAAACTGGAAAATA</gDNA_template>
            <first_frame> F  P  S  R  E  C  Q  E  A  *  G  L  I  I  G  *  G  T  R  K  E  E  G  A  P  R  D  G  G  R  E  E  S  I  T  C  *  G  G  G  T  P  N  Q  N  I  A  D  S  G  W  G  V  *  L  P  H  C  R  D  S  R  R  H  Y  *  W  C  S  C  C  *  G  H  H  *  G  C  P  H  C  *  G  H  H  *  G  C  P  D  Y  R  R  C  G  F  W  E  T  R  P  T  S  L  L  I  D  G  A  M  R  H  R  F  A  S  P  T  P  L  I  F  R  F  F  F  M  H  W  G  Q  L  H  A  F  L  L  G  V  G  *  M  E  S  E  C  *  G  E  V  R  V  A  Q  L  T  I  L  F  W  G  F  L  A  C  V  L  F  P  Q  K  T  N  Y  F  F  C  *  T  G  T  L  Y  L  V  Y  I  V  *  L  *  S  M  M  A  K  M  I  S  R  *  N  W  K  I </first_frame>
            <second_frame>  S  P  R  E  S  A  K  R  R  R  G  *  S  *  D  E  A  R  A  R  K  K  E  R  R  E  M  E  A  A  R  R  A  S  L  A  E  A  E  A  H  Q  I  R  T  *  Q  I  A  A  G  A  S  S  S  H  T  V  E  T  A  G  G  T  T  D  G  A  V  V  A  E  D  I  T  E  G  V  H  I  A  E  D  T  T  E  G  V  Q  I  T  E  D  V  G  S  G  K  P  D  P  P  A  C  *  S  T  A  L  C  A  T  G  L  L  H  L  P  L  *  Y  L  D  F  F  L  C  I  G  D  N  C  M  L  F  C  W  G  W  G  K  W  K  V  S  V  R  V  K  S  E  *  P  N  S  L  S  S  F  G  V  F  L  P  V  F  F  F  P  K  R  L  I  T  F  S  V  E  P  A  R  Y  I  L  C  T  *  F  N  S  E  A  *  W  L  K  *  Y  P  D  K  T  G  K   </second_frame>
            <third_frame>   P  L  E  R  V  P  R  G  V  G  V  D  H  R  M  R  H  A  Q  G  R  R  S  A  E  R  W  R  P  R  G  E  H  H  L  L  R  R  R  H  T  K  S  E  H  S  R  *  R  L  G  R  L  A  P  T  L  *  R  Q  Q  E  A  L  L  M  V  Q  L  L  L  R  T  S  L  R  V  S  T  L  L  R  T  P  L  R  V  S  R  L  Q  K  M  W  V  L  G  N  Q  T  H  Q  L  V  D  R  R  R  Y  A  P  Q  V  C  F  T  Y  P  S  N  I  *  I  F  F  Y  A  L  G  T  I  A  C  F  F  V  G  G  G  V  N  G  K  *  V  L  G  *  S  Q  S  S  P  T  H  Y  P  L  L  G  F  S  C  L  C  S  F  S  P  K  D  *  L  L  F  L  L  N  R  H  V  I  S  C  V  H  S  L  T  L  K  H  D  G  *  N  D  I  P  I  K  L  E  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0285M20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="68536" PGL_stop="67961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68536" e_stop="67961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="68536" e_stop="67961" e_length="576"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68536" stop="67961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600497" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGGGATTTAGTGTTTCTATTCAATTCCAGATTGCGCTTGTTTCAAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTTGAGTTGGAAACAAAGGAGGGTGTGCGGTTCAAGGTGAATGGACAGCGCATAAAAATCTATCTCGGGCATGCTGAATCGGCGAATAAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTACCGCGATATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATTGTCTTTTTAATAATGGTAGCATTTTTTTTTCTATAAATAGGTTTTAAATTTGCAGGCACATCACCAGGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTAACGGATACAACGACGGACCGTTGCGAATGCAACGGACCGTCGTATGCATCCGTCATACCAGGTATGTATTTCTGTCATTTTTGAAATTAGGGCACACACGACGGAACCTACGACGGGGCGTCGCAAGTGCGACGGAGCATCGTCGGGGAACCGTCGCGCGATTAATGAAA</gDNA_template>
            <first_frame> R  G  F  S  V  S  I  Q  F  Q  I  A  L  V  S  R  Q  T  Q  V  Q  M  D  W  S  L  H  G  Y  P  T  I  P  S  W  S  S  *  V  G  N  K  G  G  C  A  V  Q  G  E  W  T  A  H  K  N  L  S  R  A  C  *  I  G  E  *  S  D  R  G  I  P  S  *  *  S  L  S  N  Q  V  A  P  V  V  P  R  Y  *  I  R  R  L  L  G  G  N  P  I  L  I  V  F  L  I  M  V  A  F  F  F  L  *  I  G  F  K  F  A  G  T  S  P  G  N  S  A  E  N  Y  S  A  V  A  T  N  G  Y  N  D  G  P  L  R  M  Q  R  T  V  V  C  I  R  H  T  R  Y  V  F  L  S  F  L  K  L  G  H  T  R  R  N  L  R  R  G  V  A  S  A  T  E  H  R  R  G  T  V  A  R  L  M  K </first_frame>
            <second_frame>  G  D  L  V  F  L  F  N  S  R  L  R  L  F  Q  G  K  L  K  S  K  W  T  G  P  Y  T  V  T  Q  L  F  P  H  G  A  V  E  L  E  T  K  E  G  V  R  F  K  V  N  G  Q  R  I  K  I  Y  L  G  H  A  E  S  A  N  K  V  I  E  A  Y  H  L  D  E  V  *  V  I  K  W  P  Q  S  Y  R  D  I  K  S  G  A  C  W  E  A  T  Q  Y  L  L  S  F  *  *  W  *  H  F  F  F  Y  K  *  V  L  N  L  Q  A  H  H  Q  E  I  L  Q  K  T  T  P  Q  *  P  L  T  D  T  T  T  D  R  C  E  C  N  G  P  S  Y  A  S  V  I  P  G  M  Y  F  C  H  F  *  N  *  G  T  H  D  G  T  Y  D  G  A  S  Q  V  R  R  S  I  V  G  E  P  S  R  D  *  *   </second_frame>
            <third_frame>   G  I  *  C  F  Y  S  I  P  D  C  A  C  F  K  A  N  S  S  P  N  G  L  V  L  T  R  L  P  N  Y  S  L  M  E  Q  L  S  W  K  Q  R  R  V  C  G  S  R  *  M  D  S  A  *  K  S  I  S  G  M  L  N  R  R  I  K  *  S  R  H  T  I  L  M  K  S  E  *  S  S  G  P  S  R  T  A  I  L  N  Q  A  L  V  G  R  Q  P  N  T  Y  C  L  F  N  N  G  S  I  F  F  S  I  N  R  F  *  I  C  R  H  I  T  R  K  F  C  R  K  L  L  R  S  S  H  *  R  I  Q  R  R  T  V  A  N  A  T  D  R  R  M  H  P  S  Y  Q  V  C  I  S  V  I  F  E  I  R  A  H  T  T  E  P  T  T  G  R  R  K  C  D  G  A  S  S  G  N  R  R  A  I  N  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0285M20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68197" stop="67961"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGFKFAGTSPGNSAENYSAVATNGYNDGPLRMQRTVVCIRHTRYVFLSFLKLGHTRRNLRRGVASATEHRRGTVARLMK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0285M20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68535" stop="68305"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDLVFLFNSRLRLFQGKLKSKWTGPYTVTQLFPHGAVELETKEGVRFKVNGQRIKIYLGHAESANKVIEAYHLDEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="69841" PGL_stop="70574"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69841" e_stop="70574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="69841" e_stop="70574" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69841" stop="70574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTATAACTCTAGTACCTAGAAAATAGGAGCGATATTTCTCAAAAGCAAAGACTACTGCGAGGAGTTCTTGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGCTTTAATAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTATCATCGCATATTACCTCAAATGGACTGTTCCAATCCGGAGAAATAATGATAGGCGCAGACACTAACTTCTCTTTTAGCTCACCGGATGCTTTAAGACAGGATTCATTAAAACAAAATTTACATTCTTTCTCCAGCAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGATGAATCTCCGATAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTCACAGAGATCGGCGGGGGAAGTCTCTCTATTACCTCAACTTTAGCTTGATCAACCTCTATGCCCTTTTCTGAAATGCAATGACCCAACACAATACCCTCTTTCACCATGAAATGACACTTTTCCCAGTTTAGTACCAAATTGCAGTCTTCACATCTCTTAAGAACCTCAGACAAATTGGTCACACACCACTCGAATGAATCACCAACCACAGAGAAATCATCCATAAAAACCTCTATAGTTTCCTCCACCATGTCAGAAAATATTGACATCATACATCTCTGAAAGGTTGCGGGTGCATTGCACAACCCAAACGGCATTCTTC</gDNA_template>
            <first_frame> H  Y  N  S  S  T  *  K  I  G  A  I  F  L  K  S  K  D  Y  C  E  E  F  L  L  S  H  C  V  V  L  L  G  F  I  *  G  F  N  S  I  V  N  W  V  K  D  F  V  S  S  L  S  Q  Y  Y  T  K  S  H  P  T  I  I  A  Y  Y  L  K  W  T  V  P  I  R  R  N  N  D  R  R  R  H  *  L  L  F  *  L  T  G  C  F  K  T  G  F  I  K  T  K  F  T  F  F  L  Q  Q  F  A  Q  W  V  C  N  L  *  K  V  F  D  E  S  P  I  K  T  C  M  P  K  K  A  S  H  T  F  H  R  D  R  R  G  K  S  L  Y  Y  L  N  F  S  L  I  N  L  Y  A  L  F  *  N  A  M  T  Q  H  N  T  L  F  H  H  E  M  T  L  F  P  V  *  Y  Q  I  A  V  F  T  S  L  K  N  L  R  Q  I  G  H  T  P  L  E  *  I  T  N  H  R  E  I  I  H  K  N  L  Y  S  F  L  H  H  V  R  K  Y  *  H  H  T  S  L  K  G  C  G  C  I  A  Q  P  K  R  H  S   </first_frame>
            <second_frame>  T  I  T  L  V  P  R  K  *  E  R  Y  F  S  K  A  K  T  T  A  R  S  S  C  S  V  T  V  *  F  F  W  A  S  F  R  A  L  I  A  *  *  I  G  *  R  I  L  F  L  L  C  P  N  T  T  P  R  A  T  P  L  S  S  H  I  T  S  N  G  L  F  Q  S  G  E  I  M  I  G  A  D  T  N  F  S  F  S  S  P  D  A  L  R  Q  D  S  L  K  Q  N  L  H  S  F  S  S  N  L  H  N  G  C  A  I  F  E  K  S  L  M  N  L  R  *  K  P  A  C  P  R  K  L  L  T  P  F  T  E  I  G  G  G  S  L  S  I  T  S  T  L  A  *  S  T  S  M  P  F  S  E  M  Q  *  P  N  T  I  P  S  F  T  M  K  *  H  F  S  Q  F  S  T  K  L  Q  S  S  H  L  L  R  T  S  D  K  L  V  T  H  H  S  N  E  S  P  T  T  E  K  S  S  I  K  T  S  I  V  S  S  T  M  S  E  N  I  D  I  I  H  L  *  K  V  A  G  A  L  H  N  P  N  G  I  L  </second_frame>
            <third_frame>   L  *  L  *  Y  L  E  N  R  S  D  I  S  Q  K  Q  R  L  L  R  G  V  L  A  Q  S  L  C  S  S  S  G  L  H  L  G  L  *  *  H  S  K  L  G  E  G  F  C  F  F  S  V  P  I  L  H  Q  E  P  P  H  Y  H  R  I  L  P  Q  M  D  C  S  N  P  E  K  *  *  *  A  Q  T  L  T  S  L  L  A  H  R  M  L  *  D  R  I  H  *  N  K  I  Y  I  L  S  P  A  I  C  T  M  G  V  Q  S  L  K  S  L  *  *  I  S  D  K  N  L  H  A  Q  E  S  F  S  H  L  S  Q  R  S  A  G  E  V  S  L  L  P  Q  L  *  L  D  Q  P  L  C  P  F  L  K  C  N  D  P  T  Q  Y  P  L  S  P  *  N  D  T  F  P  S  L  V  P  N  C  S  L  H  I  S  *  E  P  Q  T  N  W  S  H  T  T  R  M  N  H  Q  P  Q  R  N  H  P  *  K  P  L  *  F  P  P  P  C  Q  K  I  L  T  S  Y  I  S  E  R  L  R  V  H  C  T  T  Q  T  A  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0285M20.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69977" stop="70216"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RILFLLCPNTTPRATPLSSHITSNGLFQSGEIMIGADTNFSFSSPDALRQDSLKQNLHSFSSNLHNGCAIFEKSLMNLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="94990" PGL_stop="93358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94990" e_stop="94590"/>
            <exon e_start="93679" e_stop="93358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.587" acc_prob="0.698" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94990" e_stop="94590" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.587" acc_prob="0.698">
            <gDNA_intron_boundary i_start="94589" i_stop="93680" i_length="910"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93679" e_stop="93358" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94990" stop="94590"/>
              <exon start="93679" stop="93358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562615" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGCATTTCTCCCATTGGAGACATTAGGGGGTTTACTCATTATAGAAACTAGTATTGCTTCCCATATAAATGTTTGTTCCGTCTCCGCTAGTTCTTCTTAGCAACATTAGATGTGTCCTCGAAGATGTCCTTTTTTATCGAAGTCTTTGGTTCAAGCTTAGTCACTTCTCCAGAAATAAAGATGGAATTACCTTGTTGTACCTCACTTTGCATTATCTTGATCACATCCTTGAATGTTGCAATCTTAGCGGTGCTTCTTTTGTTGCATTCGCACACTGCTATTCTTGTATGAAGTTCATGAACAGTTGTTTTTAGCGCTGTAACAACATTAGTCAAAGTAGTCTGGATCATTCATGCAATAGAGGTTTATAGGTCATCAATCAGAAGATCTACACACTGA : GGGACTTTGCAATTTTTTTCCATATTTTCTTGCAACAAGTTTCTTCATGTTGACTTTTCTAAGTGTATTTGTTCACTTGCGTACCTCCAGTTGCTTTCCATTGAGGCGACATTAACTTTCTTGCAACTTCAGATCTTGTCATACCTACAACCACAAGTATACTCAAATGTTGTTAATAATGTTGAACTGGGTTTTGGTTGATATTTCAGCTCACTCAAACTGGAGAACAGCAGATATGATTAGGTAGACAAAATTCAAGATGTCAAATATTGCAATTTAATATGCATTTATGAGTTAATCGGTTGATCGCTCAATAATTGGT</gDNA_template>
            <first_frame> G  A  F  L  P  L  E  T  L  G  G  L  L  I  I  E  T  S  I  A  S  H  I  N  V  C  S  V  S  A  S  S  S  *  Q  H  *  M  C  P  R  R  C  P  F  L  S  K  S  L  V  Q  A  *  S  L  L  Q  K  *  R  W  N  Y  L  V  V  P  H  F  A  L  S  *  S  H  P  *  M  L  Q  S  *  R  C  F  F  C  C  I  R  T  L  L  F  L  Y  E  V  H  E  Q  L  F  L  A  L  *  Q  H  *  S  K  *  S  G  S  F  M  Q  *  R  F  I  G  H  Q  S  E  D  L  H  T  E :   G  L  C  N  F  F  P  Y  F  L  A  T  S  F  F  M  L  T  F  L  S  V  F  V  H  L  R  T  S  S  C  F  P  L  R  R  H  *  L  S  C  N  F  R  S  C  H  T  Y  N  H  K  Y  T  Q  M  L  L  I  M  L  N  W  V  L  V  D  I  S  A  H  S  N  W  R  T  A  D  M  I  R  *  T  K  F  K  M  S  N  I  A  I  *  Y  A  F  M  S  *  S  V  D  R  S  I  I  G </first_frame>
            <second_frame>  V  H  F  S  H  W  R  H  *  G  V  Y  S  L  *  K  L  V  L  L  P  I  *  M  F  V  P  S  P  L  V  L  L  S  N  I  R  C  V  L  E  D  V  L  F  Y  R  S  L  W  F  K  L  S  H  F  S  R  N  K  D  G  I  T  L  L  Y  L  T  L  H  Y  L  D  H  I  L  E  C  C  N  L  S  G  A  S  F  V  A  F  A  H  C  Y  S  C  M  K  F  M  N  S  C  F  *  R  C  N  N  I  S  Q  S  S  L  D  H  S  C  N  R  G  L  *  V  I  N  Q  K  I  Y  T  L   : R  D  F  A  I  F  F  H  I  F  L  Q  Q  V  S  S  C  *  L  F  *  V  Y  L  F  T  C  V  P  P  V  A  F  H  *  G  D  I  N  F  L  A  T  S  D  L  V  I  P  T  T  T  S  I  L  K  C  C  *  *  C  *  T  G  F  W  L  I  F  Q  L  T  Q  T  G  E  Q  Q  I  *  L  G  R  Q  N  S  R  C  Q  I  L  Q  F  N  M  H  L  *  V  N  R  L  I  A  Q  *  L   </second_frame>
            <third_frame>   C  I  S  P  I  G  D  I  R  G  F  T  H  Y  R  N  *  Y  C  F  P  Y  K  C  L  F  R  L  R  *  F  F  L  A  T  L  D  V  S  S  K  M  S  F  F  I  E  V  F  G  S  S  L  V  T  S  P  E  I  K  M  E  L  P  C  C  T  S  L  C  I  I  L  I  T  S  L  N  V  A  I  L  A  V  L  L  L  L  H  S  H  T  A  I  L  V  *  S  S  *  T  V  V  F  S  A  V  T  T  L  V  K  V  V  W  I  I  H  A  I  E  V  Y  R  S  S  I  R  R  S  T  H  *  :  G  T  L  Q  F  F  S  I  F  S  C  N  K  F  L  H  V  D  F  S  K  C  I  C  S  L  A  Y  L  Q  L  L  S  I  E  A  T  L  T  F  L  Q  L  Q  I  L  S  Y  L  Q  P  Q  V  Y  S  N  V  V  N  N  V  E  L  G  F  G  *  Y  F  S  S  L  K  L  E  N  S  R  Y  D  *  V  D  K  I  Q  D  V  K  Y  C  N  L  I  C  I  Y  E  L  I  G  *  S  L  N  N  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0285M20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94920" stop="94675"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MFVPSPLVLLSNIRCVLEDVLFYRSLWFKLSHFSRNKDGITLLYLTLHYLDHILECCNLSGASFVAFAHCYSCMKFMNSCF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0285M20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94898" stop="94698"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLATLDVSSKMSFFIEVFGSSLVTSPEIKMELPCCTSLCIILITSLNVAILAVLLLLHSHTAILV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0285M20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93679" stop="93479"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTLQFFSIFSCNKFLHVDFSKCICSLAYLQLLSIEATLTFLQLQILSYLQPQVYSNVVNNVELGFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 78 chains have been computed
$ 
$ memory statistics:
$ 13744 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2290 bytes was the average size of a spliced alignment
$ 11472 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1912 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 96 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:12:37
-->
