<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:13:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="5668" stop="4521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5374" g_stop="4821" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5374" e_stop="4821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCGTCCCGTCTAGTACTAGGGAGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACGCCTCCAGTATTTTCTGCACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTGCAGGGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTTATGAGCTACTACACAAGATGGATATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGAGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="92611" stop="5185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6154" g_stop="5488" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6154" e_stop="5488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACGTGTCGTCGTCTTCAACTCAACCGCAACTCTAGCCAGTCTTCAGTAC-TCCGGATTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGAACTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTTATGTA-TTTAAGCTTCTTAGA-TACTCTTAGATTAGTAATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAATTGATTTTTA-TTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGACCCGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGATGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTTGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACACCG</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTT-TTAGACTACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGG--AATAATAGATGTTGA-ATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGG-TTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCATTCTTTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="6406" stop="5597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6106" g_stop="5888" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6106" e_stop="5888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTACTCCGGATTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGAACTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTTATGTATTTAAGCTTCTTAGATACTCTTAGA-TTAGTAATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAA</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAG-TACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330288" ref_strand="+" ref_description="SGN-E330288 [cTOD-4-J5]">
      <seq>ttttgtatcatccggggaaggccaatgttgtggccgatgctttgagtaggaagactcatagcatggggagtcttgcatctcttagtgttgaggaaagaccattggctagagatgttcaattgttagctaacagtcttgtccgattacagatctcagaggagagtgatgggatgattgcttttattgaggctcgatcttctttagtcaagcagattcgtgcacaccagtttgatgacgaaaaattatgtctcattcgagacaaagtattgagaggggaagctaaggaggttgtccttgattctgatggtgtcttgaggatcggaggcaggatttgtgtgcccaagacaggcgatttgattagattgatccttgaggaggcccattgttctcgatattctatgcatccgggagaggcgaaaatgtatcatgatctgagtcagcattactggtggtgtgggatgaagagagatattacagactttgttttgaggtgtttgacttgccagttggtcaagtgtgagcaccagtggcctgggggtgtatctcaaaggatgcctattcttacttggacgtgggagtggattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="15676" stop="14489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15376" g_stop="14789" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E330288" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15376" e_stop="14789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTATCATCCGGGGAAGACCAATGTTGTGGCCGATGCTTTGAGAAGGAAGACTCATAGCATTGGGAGTCTTGTATCTCTTAGTGTTGAGGAGAGACCATTGGTTAGAGATGTTCAATTGTTAGCTAACAATCTTGTCCGATTGCAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCGAGTAGATTCGTGCACACCAGTTTGATGATGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGTGGGGAAGCTAAGGAGGTTGTCCTTCATTCTGATGGTGTCTTGAGGATCGGAGGCAAGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTTTTGATATTCCATCCATCCGGGAGCGGCGAAGATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTCTGTTTTGAGGTGTTTGACTTGCCAGGGGGTCAAGTGTGAGCACCAGCGGCCTAGGGGTGTATCTCAAAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</genome_strand>
        <mrna_strand>TTTTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAAAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCAAGCAGATTCGTGCACACCAGTTTGATGACGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGTTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATGCATCCGGGAGAGGCGAAAATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTTTGTTTTGAGGTGTTTGACTTGCCAGTTGGTCAAGTGTGAGCACCAGTGGCCTGGGGGTGTATCTCAAAGGATGCCTATTCTTACTTGGACGTGGGAGTGGATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279140" ref_strand="+" ref_description="SGN-E279140 [cLEL-4-H21](-)">
      <seq>gtgaaccgtacgagccatgacccgggccataagaacccttagatgtctggccaccctcaaatgtcggcatagatgcatgaataggtccccgctgctgaaaagaaccactcactctctgtgatcccctacctccagatgaggcaccctgaaattgacctgatatacgagctcttttagggtccccaaactcctctctctccatcaattctgcctctttggcggcgctcacaatagactggaaagaagtcccccctagatgtccgaaacacagctgacctgatagagaaagtcaatcccctcacaaatctacggatcctctctgtttcatttggaataatggccaacgcatgcctagacaactggcaaaaacgcgccttacactctgtaaccgataaaccatcctgtctcagactctcaactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="17192" stop="18215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17492" g_stop="17919" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E279140" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17492" e_stop="17919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAACATACGAGCCCTGACCCGGGCTATAAGAACCCCTAGATGTCTGTCCACCCTCAAATGTTGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTTTGTGATCCCCTACCTCCAGATGAGGCACCATGAAACTGACCTGATATACGGGCTCTTTTAGGGTCCCCAAACTCTTCTCTCTCCATCAATTCTGCCTCTTTGGCGGCGCTCACAATGGACTGGAAAGAAGCCCCCTCCCTAATGCCCGAAACACAGCTGACCTAATAGAGAAAGTCAATTCCCTCACAAATCTGTGGATCCTCTCTGTCTTATTTGGAATAATGGACAACGCATGCCTAGACAACTGGCAAAAACGCGCCTCATACTCTGTAACTGATAAACCATCCTGTCTCAGACTCTCAAACCTCAAGG</genome_strand>
        <mrna_strand>GTGAACCGTACGAGCCATGACCCGGGCCATAAGAACCCTTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAATTGACCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTGGCGGCGCTCACAATAGACTGGAAAGAAGTCCCC-CCTAGATGTCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTACGGATCCTCTCTGTTTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTTACACTCTGTAACCGATAAACCATCCTGTCTCAGACTCTC-AA-CTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439930" ref_strand="+" ref_description="SGN-E439930 [cSTA-14-M1]">
      <seq>tttgcattgtatctgagacatggttgtggtaagaggatgatgtactattttcgagagtcgtatcgcgcgccgcgatggatattatatttcgagggacgtatcgcgcgccgcgaaggttactattttatcgagggtcgtgtcgtgcaccgcgacagatgcatggatacatatgtcccccatgggtcccagactgagagacagcgggtgtgtatcgttaagaaagacatgcatcacgatatttgacattgcatctcatggcattgcacatttttattattgatgaacttgaacatgtgtttttgctgatcttgtgattgtttctctgtgaagcttgtgactgttgaatattgagttgttattgagaatgtgtaaactgatagagcgtggttattgattggtgttcttggtaaactgttaggctgtagcgtggaggtttagatagggcgtaaggagtacccgtattcttttcacttaacttgtgtttagaggtttgcttgttgggtaccgcgtggtttggtactcaccccttgcttttataattttttgtaggttacgagcccgaatttttgtgatatcttccattctcttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="20100" stop="11536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19801" g_stop="19221" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E439930" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19801" e_stop="19221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCATTGTATCTGAGACATGGATGTGGTAAGA-G--GATGTACCA-TTTCGAGGGTCGTATCGCGCGCCGCGATGGATATTATATTTCGAGGGACGTATCACGCGCCGCGAAGGTTACTA--TTATCGAGGGTCGTGTCATGCGCCGCGATAGATGCATGGACAGATATGTCCCCCATGGGTCCCGGACTGAGAGACAGCGGGTGCGTATCATTAAGAAAGACATGCATCACGATGTTTGACATTGCATCTCATGGTATTGCACA-TTTTATTATTGATGAACTTGAACACGTG-TTTTGCTGATATTGTGATTGTTTCTCTGTGAAGCTTGTGACTGTTGAATATTGAGTTGTTATTGAGAATGTGTAAAATGATAGAGTGTGGTTATTGAGTTGTGTGTTTGGTAAACCGTTAAGCTGTAGCGTGGAGGTTTAGATAGGGCGTAAGGAGTACCCGCATTTTGTTCACTTAACTTGTGTTTAGAGGTTTGCTTGTTGGGTACCGCGTGGTTTAGTACTCACCCCTTGCTTCTATAA-ATTTTGTAGGTTACGAGCCCGGATCTTCGTGATACCTGTCATTCTTTTTG</genome_strand>
        <mrna_strand>TTTGCATTGTATCTGAGACATGGTTGTGGTAAGAGGATGATGTACTATTTTCGAGAGTCGTATCGCGCGCCGCGATGGATATTATATTTCGAGGGACGTATCGCGCGCCGCGAAGGTTACTATTTTATCGAGGGTCGTGTCGTGCACCGCGACAGATGCATGGATACATATGTCCCCCATGGGTCCCAGACTGAGAGACAGCGGGTGTGTATCGTTAAGAAAGACATGCATCACGATATTTGACATTGCATCTCATGGCATTGCACATTTTTATTATTGATGAACTTGAACATGTGTTTTTGCTGATCTTGTGATTGTTTCTCTGTGAAGCTTGTGACTGTTGAATATTGAGTTGTTATTGAGAATGTGTAAACTGATAGAGCGTGGTTATTGATTGGTGTTCTTGGTAAACTGTTAGGCTGTAGCGTGGAGGTTTAGATAGGGCGTAAGGAGTACCCGTATTCTTTTCACTTAACTTGTGTTTAGAGGTTTGCTTGTTGGGTACCGCGTGGTTTGGTACTCACCCCTTGCTTTTATAATTTTTTGTAGGTTACGAGCCCGAATTTTTGTGATATCTTCCATTCTCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444000" ref_strand="+" ref_description="SGN-E444000 [cSTA-41-C17]">
      <seq>tacaccggtgatgtacttgaattctccgccctctttctctttcgatgcattcgagaaatccatttccataaaaaacacacaaacctacgcttttcttttcaccatttctaaaatcatccattttttcttgatttgttctcaaaaatgtctcatcttcttcaatccacctttattcccaccacacccaccacccttcgtcgtcgttctgtgtttccgacgacccatttacggaaaacccatgttgtagaatcgaagatccgcgagattttcatgccagcacttagttctactatgactgaaggcaagattatcagttggatgaaaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="37218" stop="38147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37518" g_stop="37847" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E444000" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37518" e_stop="37847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCGGTAATGTAGTTGAAGTCTCCGCCCTCATTCTCTTTCGATGCATTCGAGAAATCCATTTCTATAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGA</genome_strand>
        <mrna_strand>TACACCGGTGATGTACTTGAATTCTCCGCCCTCTTTCTCTTTCGATGCATTCGAGAAATCCATTTCCATA-AAAAACACACAAACCTACGCTTTTCTTTTCACCATTTCTAAAATCATCCATTTTTTCTTGATTTGTTCTCAAAAATGTCTCATCTTCTTCAATCCACCTTTATTCCCACCACACCCACCACCCTTCGTCGTCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTAGAATCGAAGATCCGCGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGCAAGATTATCAGTTGGATGAAAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317747" ref_strand="+" ref_description="SGN-E317747 [cTOA-30-I15]">
      <seq>ggtaatgtagttgaagtctccgccctcattctctttcgatgcattcgagaaatccatttctatagaaaaacacacaaacctacgcttttcttttcaccattattaaaatcattcgatttttcttgatttgttcgcaaaaatgtctcatcttcttcaatccaccttcatccccaccacacccactaccctccgtcgccgttctgtgtttccgacgacccatttacggaaaacccatgttgtggaatcgaagatccgtgagattttcatgccagcacttagttctactatgactgaaggaaagattatcagttggatgaaaactgaaggtgataaactagctaaaggtgaatcagttgttgttgttgaatcggataaagctgatatggatgttgaatctttttatgatgggtatcttgctagtatcattgtacctgaaggtagttnctgcacctgttggttctccaattgctcttcttgctgaatctgaagatgaaatttcacttgctaaatcgaaaactccgacatccacttctacttctagtccagctgctactgctagtgtaactgaagaggtttncacggtagcagctgcggttgcgggtccggttacggctacgtcatcttctgatgctgcgcctgtgaaaatggcgtcgtcgattccccagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="37224" stop="38490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37524" g_stop="38190" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E317747" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37524" e_stop="38190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAATGTAGTTGAAGTCTCCGCCCTCATTCTCTTTCGATGCATTCGAGAAATCCATTTCTATAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTT-CTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAGGTTTCAACGGTAGCAGCTGCGGTTGCGGTCCCGGTTACGGCTACGTCATCTTCTGATGCTGCGCCTGTGAAAATGGCGTCGTCGATTCACCCAGCA</genome_strand>
        <mrna_strand>GGTAATGTAGTTGAAGTCTCCGCCCTCATTCTCTTTCGATGCATTCGAGAAATCCATTTCTATAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTNCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAGGTTTNCACGGTAGCAGCTGCGGTTGCGGGTCCGGTTACGGCTACGTCATCTTCTGATGCTGCGCCTGTGAAAATGGCGTCGTCGATTC-CCCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445254" ref_strand="+" ref_description="SGN-E445254 [cSTA-44-N22]">
      <seq>tgtagttgaattctccgccctctttctctttcgatgcattcgagaaatccatttccataaaaaacacacaaacctacgcttttcttttcaccatttctaaaatcattcattttttcttgatttgttctcaaaaatgtctcatcttcttcaatccaccttcatccccaccacacccactaccctccgccgccgttctgtgtttccgacgacccatttacggaaaacccatgttgtagaatcgaagatccgtgagatttttatgccagcacttagttctactatgactgaaggcaagattatcagttggatgaaaactgaaggtgataaactagctaaaggtgaatcagttgttgttgttgaatcggataaagctgatatggatgttgaatctttttatgatgggtatcttgctagtattattgtacctgaaggtagttctgcacctggtggttctccaattgctcttcttgctgaatctgaagatgaaatttcacttgccaaatcgaaaactccgacacccacttctacttctactccggctgctgctgcagctgtaaccgaagaggtttctacggtagcagctgcggttacggttacgtcatcttctgatgctggaccagtgaaaatggcgttgtctattcacccggcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="37229" stop="38492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37529" g_stop="38121" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E445254" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37529" e_stop="38121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGTTGAAGTCTCCGCCCTCATTCTCTTTCGATGCATTCGAGAAATCCATTTCTATAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAGGTTTCAACGGTAGCAGCTGCGGTTGCG</genome_strand>
        <mrna_strand>TGTAGTTGAATTCTCCGCCCTCTTTCTCTTTCGATGCATTCGAGAAATCCATTTCCATA-AAAAACACACAAACCTACGCTTTTCTTTTCACCATTTCTAAAATCATTCATTTTTTCTTGATTTGTTCTCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGCCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTAGAATCGAAGATCCGTGAGATTTTTATGCCAGCACTTAGTTCTACTATGACTGAAGGCAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATTATTGTACCTGAAGGTAGTTCTGCACCTGGTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCCAAATCGAAAACTCCGACACCCACTTCTACTTCTACTCCGGCTGCTGCTGCAGCTGTAACCGAAGAGGTTTCTACGGTAGCAGCTGCGGTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348612" ref_strand="+" ref_description="SGN-E348612 [cTOF-30-E8]">
      <seq>tgaagtctccgccctcattctctttcgatgcattcgagaaatccatttctatagaaaaacacacaaacctacgcttttcttttcaccattattaaaatcattcgatttttcttgatttgttcgcaaaaatgtctcatcttcttcaatccaccttcatccccaccacacccactaccctccgtcgccgttctgtgtttccgacgacccatttacggaaaacccatgttgtggaatcgaagatccgtgagattttcatgccagcacttagttctactatgactgaaggaaagattatcagttggatgaaaactgaaggtgataaactagctaaaggtgaatcagttgttgttgttgaatcggataaagctgatatggatgttgaatctttttatgatgggtatcttgctagtatcattgtacctgaaggtagttctgcactggtttggttctccaattgctcttcttgctgaatctgaagatgaaatttcacttgctaaatcgaaaactccgacatccacttctacttctagtccagctgctactgctagtgtaactgaagaggtttcaacggtagcagctgcggttgcggtcccggttacggctacgtcatcttctgatgctgcgcctgtgaaaatggcgtcgtcgattcacccagcatcagaagggggaagagagtggtggcttcaccgtatgctaagaaattggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="37235" stop="38541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37535" g_stop="38241" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E348612" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37535" e_stop="38241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTCTCCGCCCTCATTCTCTTTCGATGCATTCGAGAAATCCATTTCTATAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACCTG-TTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAGGTTTCAACGGTAGCAGCTGCGGTTGCGGTCCCGGTTACGGCTACGTCATCTTCTGATGCTGCGCCTGTGAAAATGGCGTCGTCGATTCACCCAGCATCAGAAGGGGGGAAGAGAGTGGTGGCTTCACCGTATGCTAAGAAATTGGCT</genome_strand>
        <mrna_strand>TGAAGTCTCCGCCCTCATTCTCTTTCGATGCATTCGAGAAATCCATTTCTATAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACTGGTTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAGGTTTCAACGGTAGCAGCTGCGGTTGCGGTCCCGGTTACGGCTACGTCATCTTCTGATGCTGCGCCTGTGAAAATGGCGTCGTCGATTCACCCAGCATCAGAA-GGGGGAAGAGAGTGGTGGCTTCACCGTATGCTAAGAAATTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445255" ref_strand="+" ref_description="SGN-E445255 [cSTA-44-N22]">
      <seq>tctttctctttcgatgcattcgagaaatccatttccataaaaaacacacaaacctacgcttttcttttcaccatttctaaaatcattcattttttcttgatttgttctcaaaaatgtctcatcttcttcaatccaccttcattcccaccacacccactaccctccgccgccgttctgtgtttccgacgacccatttacggaaaacccatgttgtagaatcgaagatccgcgagatttttatgccagcacttagttctactatgactgaaggcaacattatcagttggatgaaaactgaaggtgataaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="37249" stop="38159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37549" g_stop="37859" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E445255" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37549" e_stop="37859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTCTTTCGATGCATTCGAGAAATCCATTTCTATAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACT</genome_strand>
        <mrna_strand>TCTTTCTCTTTCGATGCATTCGAGAAATCCATTTCCATA-AAAAACACACAAACCTACGCTTTTCTTTTCACCATTTCTAAAATCATTCATTTTTTCTTGATTTGTTCTCAAAAATGTCTCATCTTCTTCAATCCACCTTCATTCCCACCACACCCACTACCCTCCGCCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTAGAATCGAAGATCCGCGAGATTTTTATGCCAGCACTTAGTTCTACTATGACTGAAGGCAACATTATCAGTTGGATGAAAACTGAAGGTGATAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687801" ref_strand="+" ref_description="SGN-E687801 [T3_tus_81_B16]">
      <seq>cacgatagaaaaacacacaaacctacgcttttcttttcaccattattaaaatcattcgatttttcttgatttgttcgcaaaaatgtctcatcttcttcaatccaccttcatccccaccacacccactaccctccgtcgccgttctgtgtttccgacgacccatttacggaaaacccatgttgtggaatcgaagatccgtgagattttcatgccagcacttagttctactatgactgaaggaaagattatcagttggatgaaaactgaaggtgataaactagctaaaggtgaatcagttgttgttgttgaatcggataaagctgatatggatgttgaatctttttatgatgggtatcttgctagtatcattgtacctgaaggtagttctgcacctgttggttctccaattgctcttcttgctgaatctgaagatgaaatttcacttgctaaatcgaaaactccgacatccacttctacttctagtccagctgctactgctagtgtaactgaagaggtttcaacggtagcagctgcggttgcggtcccggttacggctacgtcatcttctgatgctgcgcctgtgaaaatggcgtcgtcgattcacccagcatcagaaggggggaagagagtggtggcttcaccgtatgctaagaaattggctaaggaattggggttggatttgaggggagtggtgggcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="37283" stop="38581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37581" g_stop="38281" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E687801" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37581" e_stop="38281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAGGTTTCAACGGTAGCAGCTGCGGTTGCGGTCCCGGTTACGGCTACGTCATCTTCTGATGCTGCGCCTGTGAAAATGGCGTCGTCGATTCACCCAGCATCAGAAGGGGGGAAGAGAGTGGTGGCTTCACCGTATGCTAAGAAATTGGCTAAGGAATTGGGGTTGGATTTGAGGGGAGTGGTGGGCAGCG</genome_strand>
        <mrna_strand>CACGATAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAGGTTTCAACGGTAGCAGCTGCGGTTGCGGTCCCGGTTACGGCTACGTCATCTTCTGATGCTGCGCCTGTGAAAATGGCGTCGTCGATTCACCCAGCATCAGAAGGGGGGAAGAGAGTGGTGGCTTCACCGTATGCTAAGAAATTGGCTAAGGAATTGGGGTTGGATTTGAGGGGAGTGGTGGGCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326662" ref_strand="+" ref_description="SGN-E326662 [cTOC-17-O8]">
      <seq>tagaaaaacacacaaacctacgcttttcttttcaccattattaaaatcattcgatttttcttgatttgttcgcaaaaatgtctcatcttcttcaatccaccttcatccccaccacacccactaccctccgtcgccgttctgtgtttccgacgacccatttacggaaaacccatgttgtggaatcgaagatccgtgagattttcatgccagcacttagttctactatgactgaaggaaagattatcagttggatgaaaactgaaggtgataaactagctaaaggtgaatcagttgttgttgttgaatcggataaagctgatatggatgttgaatctttttatgatgggtatcttgctagtatcattgtacctgaaggtagttctgcacctgttggttctccaattgctcttcttgctgaatctgaagatgaaatttcacttgctaaatcgaaaactccgacatccacttctacttctagtccagctgctactgctagtgtaactgaagaagtttcaacggtagcagctgcggttgcggtcccggttacggctacgtcatcttctgatgctgcgcctgtgaaaatggcgtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="37286" stop="38476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37586" g_stop="38176" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E326662" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37586" e_stop="38176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAGGTTTCAACGGTAGCAGCTGCGGTTGCGGTCCCGGTTACGGCTACGTCATCTTCTGATGCTGCGCCTGTGAAAATGGCGTCGT</genome_strand>
        <mrna_strand>TAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAAGTTTCAACGGTAGCAGCTGCGGTTGCGGTCCCGGTTACGGCTACGTCATCTTCTGATGCTGCGCCTGTGAAAATGGCGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442052" ref_strand="+" ref_description="SGN-E442052 [cSTA-31-H12]">
      <seq>attttttcttgatttgttctcaaaaatgtctcatcttcttcaatccaccttcatccccaccacacccactatcctccgccgccgtcctgtgtttccgacgacccatttacggaaaacccatgttgtagaatcgaagatccgtgagattttcatgccagcacttagttctactatgactgaaggcaagattatcagttggatgaaaactgaaggtgataagctagctaaaggtgaatcagttgttgttgttgaatcggataaagctgatatggatgttgaatctttttatgatgggtatcttgctagtattattgtacctgaaggtagttctgcacctgttggttctccaattgctcttcttgctgaatctgaagatgaaatttcacttgccaaatcgaaaactccgacacccacttctacttctagtccggctgctgctgaagctgtaaccgaagaggtttctacggtagcagctgcggttacggttacgtcatcttctgatgctggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="37338" stop="38439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37638" g_stop="38121" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E442052" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37638" e_stop="38121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAGGTTTCAACGGTAGCAGCTGCGGTTGCG</genome_strand>
        <mrna_strand>ATTTTTTCTTGATTTGTTCTCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTATCCTCCGCCGCCGTCCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTAGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGCAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAGCTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATTATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCCAAATCGAAAACTCCGACACCCACTTCTACTTCTAGTCCGGCTGCTGCTGAAGCTGTAACCGAAGAGGTTTCTACGGTAGCAGCTGCGGTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310329" ref_strand="+" ref_description="SGN-E310329 [cTOA-1-K5]">
      <seq>agaactagtctcatcttcttcaatccaccttcattcccaccacacccactaccctccgtcgccgatctgtgtttccgacgacccatttacggaaaacccatgttgtggaatcgaagatccgtgagattttcatgccaccacttagttctactatgactgaaggaaagattatcagttggatgaaaactgtatgtgatgaactagctaaaggtgaatcagttgttgttgttgaatcggatgaagctgatatggatggtgaatctttttatgaagggtatcttgctagtatcattgtacctgaaggtagttctgcacctgttggttctccaattgctcttcttgcggaatctgaagatgaaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="37361" stop="38321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37659" g_stop="38021" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E310329" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37659" e_stop="38021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAT-GTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTC</genome_strand>
        <mrna_strand>AGAACTAGTCTCATCTTCTTCAATCCACCTTCATTCCCACCACACCCACTACCCTCCGTCGCCGATCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCACCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGTATGTGATGAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATGAAGCTGATATGGATGGTGAATCTTTTTATGAAGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCGGAATCTGAAGATGAAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691300" ref_strand="+" ref_description="SGN-E691300 [LH_Ea05M02]">
      <seq>ccctgttcgcatcttcttcaatccacattcatccccaccacaccctctaccctccgtcgccgttctgtgtttccgacgacccatttacggaaaacccatgttgtagaatcgaagatccgtgagattttcatgccagcacttagttctactatgactgaaggaaagattatcagttggatgaaaactgaaggtgataaactagctaaaggtgaatcagttgttgttgttgaatcggataaagctgatatggatgttgaatctttttatgatgggtatcttgctagtattattgtacctgaaggtagttctgcacctgttggttctccaattgctcttcttgctgaatctgaagatgaaatttcacttgctaaatcgaaaactccgatacccacttctacttctagttcggctgctactgctagtgtaactgaagaggtttctacggtagcagctgcggttgcggttacggctacgtcatcttctgatgccgggcctgtgaaaatggcgtcttcgattcacccagcatcagaaggggggaagagagtggtggcttcaccgtatgctaagaaattggctaaggaattggggttggatttgaggggagtggtggggagtgggcctaatgggaggattgtggcgaaggatgttgaagcagcagctggttctgctcctattggtgttgctgcagcggcgaagccaagtggcggggcaccacccgctccagcagtagaattagggacgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="37364" stop="38709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37661" g_stop="38409" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E691300" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37661" e_stop="38409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATG-TCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAGGTTTCAACGGTAGCAGCTGCGGTTGCGGTCCCGGTTACGGCTACGTCATCTTCTGATGCTGCGCCTGTGAAAATGGCGTCGTCGATTCACCCAGCATCAGAAGGGGGGAAGAGAGTGGTGGCTTCACCGTATGCTAAGAAATTGGCTAAGGAATTGGGGTTGGATTTGAGGGGAGTGGTGGGCAGCGGGCCTAATGGGAGGATTGTGGCAAAGGATGTTGAAGCAGCAGCTGGTTCTGCTCCTATTGGTGTTGCTGCAGCGGCGAAGCCAAGTGGTGGTGCACCAGCGGCCCCAGCAGTAGAATTGGGGACGACT</genome_strand>
        <mrna_strand>CCCTGTTCGCATCTTCTTCAATCCACATTCATCCCCACCACACCCTCTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTAGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATTATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGATACCCACTTCTACTTCTAGTTCGGCTGCTACTGCTAGTGTAACTGAAGAGGTTTCTACGGTAGCAGCTGCGGTT---G---CGGTTACGGCTACGTCATCTTCTGATGCCGGGCCTGTGAAAATGGCGTCTTCGATTCACCCAGCATCAGAAGGGGGGAAGAGAGTGGTGGCTTCACCGTATGCTAAGAAATTGGCTAAGGAATTGGGGTTGGATTTGAGGGGAGTGGTGGGGAGTGGGCCTAATGGGAGGATTGTGGCGAAGGATGTTGAAGCAGCAGCTGGTTCTGCTCCTATTGGTGTTGCTGCAGCGGCGAAGCCAAGTGGCGGGGCACCACCCGCTCCAGCAGTAGAATTAGGGACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729501" ref_strand="+" ref_description="SGN-E729501 [LA21BA10]">
      <seq>gcaataaaggttgaagcagcagctggntctgctcctattggtgcttttgcagcggcgaagccaagtggtggtgcaccagcggccccagcagtagaagtggggacgactgtgccatttacgacaatgcagagtgcggtgagtcgaaatatggtggagagtttggcagttccaacttttagagtggggtatactattactactaatgcccttgatgctctctacaagaaggtcaagtcgaaaggagtgacaatgacagcattgttggcaaaagccacagcacttgcattggtgcaacatcctgttgtgaactctagttgtagagatgggaagagtttcacatataacagtagtattaacattgctgttgcagtcgccatagatggtggcttgattactcctgtacttcaggatgctgacaaggttgatttatactcattgtcaaggaaatggaaggagttggttgataaggcccgggctaagcaacttcaaccccatgaatacaccacaggcacttttaccctatccaaccttggaatgtttggcgttgaccgttttgatgccatcttaccaccaggaactggtgcaattatggctgttggagcatctcaacccacacttgttggaaccaaagatggtcgaattggcatgaaaaaccaaatgcaggtcaatgtcactgctgatcatcgggtaatatatggtgctgatttggcggctttcctgcaaaccttagcacagataattgaggatcctaaagaccttactctttangctcttgtcctcaattgtgggagattacatgttttgtagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="38009" stop="44465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38302" g_stop="38529" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38530" i_stop="38812" i_length="283">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38813" g_stop="39004" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="420" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39005" i_stop="39082" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39083" g_stop="39170" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="508" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39171" i_stop="43651" i_length="4481">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43652" g_stop="43722" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="579" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43723" i_stop="43805" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43806" g_stop="43889" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="663" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43890" i_stop="44018" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44019" g_stop="44165" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="810" r_length="147" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E729501" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38302" e_stop="38529"/>
          <exon e_start="38813" e_stop="39004"/>
          <exon e_start="39083" e_stop="39170"/>
          <exon e_start="43652" e_stop="43722"/>
          <exon e_start="43806" e_stop="43889"/>
          <exon e_start="44019" e_stop="44165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGGATGTTGAAGCAGCAGCTGGTTCTGCTCCTATTGGTGTTGCTGCAGCGGCGAAGCCAAGTGGTGGTGCACCAGCGGCCCCAGCAGTAGAATTGGGGACGACTGTGCCATTTACGACAATGCAGAGTGCGGTGAGTCGAAATATGGTGGAGAGTTTGGCAGTTCCAACTTTTAGAGTGGGGTATACTATTACTACTAATGCCCTTGATGCTCTCTACAAGAAGGTATGGTTTTTTGCTTTGTATTATTTCCTTGATTAGTTGTAAAAAGATTGGATTTTTTGGGATAAACTGGGAAGTGTATGCTATGTCATAGTTTAGATAAGCTGAAAATGCTAGCTGAGATGGTATATCTGAAAATCAGTAGATAAATGTATTTACTGCAACATCTAGACATTATGAGATTCTCTGAGAATAGGCAAACAGAAGTGGATCTTCTATGTTTTAGTAAATTTTAAGATAAGCAGTTTCATCAATTCAGTTCCTGAATGTATTTGTGAATTTGTAGGTCAAGTCGAAAGGAGTGACAATGACAGCATTGTTGGCAAAAGCCACAGCACTTGCATTGGTGCAACATCCTGTTGTGAACTCTAGTTGTAGAGATGGGAAGAGTTTCACATATAACAGTAGTATTAACATTGCTGTTGCAGTCGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAGGTTAGTTTGAAAATCATTTTTTAATATTCTGATTTCACATATAGTGAAGTGATTGATATGATTAAATATTCATTACAGGTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAGGTATGCTATTACGTTAGATGAGTTAACAGTCTGATGTGATAGAGGTGTATACCTATCACCAGCTGATCATATTTATTTTTTTTGAAAACGATAATTGTTTCTATTTCTGTAGAACAGTAAATAGGTTTTCCTGAAAACCCTATTTACATAAGGAACTCTGACAATACTGACCTATCCCTACAGTGAGTCTAAGACATCAAAAATAGAGACGATATCGTTAGAGTAAATCTGATTACACCAAAAACACAGTGTCAAAAACTCTTAAGGTTCCTCTCTTTCCATATTGTGCACCAAATAGGGGCAGGACAATTCTTTAGTTACTTCTGTTTTTTTCTTGTGTCCCTGATTCTTCCTAGCTATGTAGAGCCTCTGAAATTCTCCCAGGCATGGACCAGGAGATGTTTTTAAGTCTGAGGAACAAGTTCCACAACTGCCAGTGACTCCACATATTGTTAGCTGCAACTGCCTGTCTTTATATTGGATGGTTTCTTGAACTAGATTCTTTAACTTGGATATTAGCTTACATCATTATTTCTGAAGTCCATATGAACAAGGCTCACACTCACTCAGTAGACTGATACATGCCTAGAACTGATTAAGAGATAGGAGTTGGTCTGCTACTACAAGATATATATTTGGAGTCTGGAGATAGCACTTAATGTTTCTTCAAAACTCCTTTTCCATATGTGCATGCTCCTCATGTTGAATTTGAGAACTTGTAACTTATTATCAAAAGGCTGGTATTATAGTTTGATGTTTGAGCTAAGTGGCCTTCAAAACTCCAAATGACAAAATTGAGGTACTCCTGCTAATCCAGTTTCACGCATTACGGGTGCTTTAGCCACCTTATGAACTGAGACTACAACATAGAACAAATAGTTGGTTTTTTTTTTAAAATCAGTAGTTGAGTGTTGCTAGGACTTGTTTCTTGAAGTTATGGTCCAACTTCAGAAAACAAGAATTTGGTACTTATGACTGCTTATAATATTACTAGTACAATTTTTTTAGTGGATCAAGTCCAGACTGCTAATTAAGTGAGTTTTTATTCCAGTTCATTTTCATAAGGGCATGGCTTCACAGCTACAAATAAGTTATTCCCCTTCTTTATGGTTTAGCATCATAATGTTCTTTACTTCAACAGCTTAAATGACAGGTCTGATCTGAACTTTCACTAAATGTAAAGAACACAACTAGTACAACATTTGTAGCTTAGTGCTGATGCATGTGTAAATGTTATTATGAGCACTTGTTGGAGAGACTGATGAAGATAAAAAGAAACTTTATTCCATCTTGATTATGTGATTCTGTTTGATTCAATCCAAAATTTAAGATATTAGTCTGATAAAATTATTAATGAAATTACTTTACCTACAAAGTTGTGTAGTACCCTCTCTCCCTCTTAAAATGCTTGTTTGTTTCTTTTAGTTGTGATATATTGTCATTTGATAAATCAGATCTTTTAAACGCTTATATTTCACAAAGAGTTTTGGGATCCCTGCTTACTATTTGTATACACCTAATTGCTAATTTATTTTATTTTTAATAAAATGAATCGGAATGAAAGGAAGAGCAGAATGAATACAAAGGATAATCTAGCTGACCGCAACCAAATAGATTAGAACACAATTGCAAAAGACAAATAAACCACATTTCCCCCAACAAATACGAAATAACTCATTTTTTAACTTTTCTCATAATAATCTTGTTGTGGACTACCAAAATTGGGATAATGAGTAATCGAAGAGAATTGAAGAATTAACACAGCCGCCTGTTCACCCATTTAAACTAGAAATAGCTGGCGGATGAGTAGTATATGTATAATATATGTATACAGATTATGAAAAGTATACAGTAAATCCAACCGGTTATTTAGTATAACAGAAAAGACCATTATCGAAGTTCTAATTTGTTAGTTAAACAAATTTGGTTTCTTAAAACTTTGGAAAGTGGTCAAGTTCAAAAAAAACTTTGGAAAGTGGTATAATAATGTTACTAAAAGAACAATATATGTCATTCTTGGTATATCACAAACTAGGACATATGTTCAGCATGGAGGGAGTACCTTTTATTCATTGGAATAGTTGGTTTGCTTCTTTTTATAAGGTATCAATTCCTACTTCCAGCGAAATCTGTCCTTTCTGTTTTTGTTTTTCCTGGGTTTTAGTTGGGGTTGGGCAGAGAATTGAGCATTCTACTTCGCTAGATATTACTAACTGGCAACTTGATAGGTTACGATGCTTATGTTCCTGTATTTTGTTTAACGCTCAAGCTAAGCAAATCACTTCTGATTTCGACCATATCTATATTAGTGAGATATGCATATCAATCTCACAGTTACTATTCTCAAAATATAGAATGGCATAGCAATCTCAAATAATGTCCTCAAAACAAAAGTGTTTTTGTTTATCCAACTTTCTGGACATTTTCTGAGGTTGAGGATGTTGCAGGCAATTGAAAGGGAAAGAAGGTGAAACGATTGAATGAGGTTAAAACCTTTCAAGTTTTGTCAAAGTCAAACTCAAAATTTTCAAGTTTTTAACCTTAAAAATGAGTAGGGTAGGATGATGAAGCATACTGCATGACCTTGTTGGGTTTTCTTTTCTTTTGTCTCCATTCCGAATGCTCATCATATTCGGATCTTCAAGACATTCTTGACAAGAACGTTTAATGTCCTATGGATAATGACCTGTGAATGGATCTTTGAGCCACCATACACTGTTACATTCTGAATTGAAATGTTAATCCAGTGTTTCCACAAGGCCTTGTAATAACGGGAATCATAGAATGATAAACATTATAGTGGAGATTTCATTATGGCAGCAAAAGTCCTCCTACAAGGGGGTTGCTTGCCTAGCTCACAAAGGCATCCTTTGCCAACATTTACAAATTATTGGGCCTAGCGTTAACTCAGTTATTCACTATAGTAGAAACAATTACTAAAAGCATTTAACACCTTACACTCATATAACGATCAAATCATCCATATGTTAAAAGGAAAAACCGAGGGAGAATTAACCCTTCGGGGTGGCCCAGTGGTTTAGGCTTGGGATTTATATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCTTTGCCTCTGGGTCGAGCTCGTTGCATCAGGCTTGCCTAGTGCAGGTTACGTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTACCCTGTGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATTCAAAAAAAAAAAAAACCAAGGGAGAATTTATCTAGATGAAGACATTTTATTATACCATGATTTTTGTAAAGGTTATAAGATGTTTTTCAACTACTACATAGCCACTTTATACAAGAGATAGAAAATTAGTACTTCACTTATTGAATATATATAGTACAAGTGGAATTCAAATAACATGAATAGTAGTCTTATACACATAAAGGACATAAAAACTCAATGCTTGAAAATACAGTGAGGAATCTCTGATATTGTAGAGACTTAATCGGTAATGGGCAAGACATAGGAAAAATAGGGATTGTTATATGAACTGGAGAACAAATAATACGATAGAGTTATTAAGCATGTCAAACAAGACATGTGATAATTGGATGTTATGGCAAAAGGACCCTTTAATAATGATCTGCATGGCACGAGATAGTGGAATGTTATATCAAGAGAGGGGGTAATGGCTGGAATTGAACCCCCATCAACAGTGGTTTGCATGGCATGGGATGATGGAGTTTTTATGGCAAGACATGGCATAATTGGTTTTTATGGTAAGGGGCCCATAAATAATGTTTTGCATGCATGCGATAGTGAGATTTTATGGCAAGGGGCCCTTCTTCTAGGGCATGTTCTCATCTTCAGAATGCTAAATTCCGTTTTTTTTTTTATATTTTATGTCCATTTTTTGTTGTTGGTGAAGTAGATATTTTACTTTGATGCCTTTGCACTTTTTCAATGGTCTCCTATTGTTTTCTGTGTATCAGCAATAATCTTGTACACTAAATTGCCGAACTATTTAGAGTTATTGATGTTATAGCCCAAATGATTATGTAGCTGTTCATGCATTTATGGTGGAAGCATGTACATTATCTCCTCTTGCAGGTAGAGATTAGGCCAGTTGTAATTTGGCATGCTTTTTCTGCACTGAAACAGTGATTAGTTTGAACTTTGGATGTACTCAATCAAAGATGCCTATTGGCCAAATATTAAAATATGTGAAAGAAAAGAAAATGTCTATTTCTTGTCTCCATGGCGGGAGATTAGTTAAGCTAGCTGTGTTTAGCGAGTTCTCTTTTTTTTTTTTTTTACAGTACAACAACTATAACTTAGTCCCTAACAAGTTGGGGTCGGCTATATGAATTTCCACTTCTTCATTTAAGCTCATTTCTTTTATCCAGCTGACTTCTCTGCTTTTGCATGTCAAGGTTCTTGTTGTTCATATGTTGTTTAGGAGTTTGATTGTTTTGGCTGTTGGATTTGTACTGCAGGCACTTTTACCCTATCCAACCTTGGAATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCACCAGGAACTGTAAGTTCCACTCTGATATGCCTCCTGCCTGATATGTGAATACTTCTGGTATTGTTTCTCATGTTGGTTCAACTCTTGTCTAGGGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAGGTAGAGTGATGGTTCATGTTTGCTATTGATCTTTGGCATGCTAGTTCTTTTTCTCAAAATAAATGCTTAGGATTTTGCACAATTATCCAATTTGTTGATGCTTAAGCTATTAAATGTTAAAAATTTCAGGTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGT</genome_strand>
        <mrna_strand>GCAATAAAGGTTGAAGCAGCAGCTGGNTCTGCTCCTATTGGTGCTTTTGCAGCGGCGAAGCCAAGTGGTGGTGCACCAGCGGCCCCAGCAGTAGAAGTGGGGACGACTGTGCCATTTACGACAATGCAGAGTGCGGTGAGTCGAAATATGGTGGAGAGTTTGGCAGTTCCAACTTTTAGAGTGGGGTATACTATTACTACTAATGCCCTTGATGCTCTCTACAAGAAG...........................................................................................................................................................................................................................................................................................GTCAAGTCGAAAGGAGTGACAATGACAGCATTGTTGGCAAAAGCCACAGCACTTGCATTGGTGCAACATCCTGTTGTGAACTCTAGTTGTAGAGATGGGAAGAGTTTCACATATAACAGTAGTATTAACATTGCTGTTGCAGTCGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAG..............................................................................GTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTTTACCCTATCCAACCTTGGAATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCACCAGGAACT...................................................................................GGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAG.................................................................................................................................GTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTANGCTCTTGTCCTCAATTGTGGGAGATTACATGTTTTGTAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469303" ref_strand="+" ref_description="SGN-E469303 [cSTB-11-K17]">
      <seq>ggatgttgaagcagcaactggttctgctcctattggtgttgctgcagcggcaaagccaagtggtggtgcaccagcggctccagcagtagaattggggacgactgtgccatttacgacaatgcagaatgcagtgagtcgaaatatggtggagagtttggcagttccaacttttagagtggggtatactattactactaatgcccttgatgctctctacaagaaggtcaagtcgaaaggagtgacaatgacagcattgttggcaaaagccacagcacttgcattggtgaaacatcctgttgtgaactctagttgtagagatgggaagagtttcacgtataacagtagtattaacattgctgttgcagtggccatagatggtggcttgattactcctgtacttcaggatgctgacaaggttgatttatactcattgtcaaggaaatggaaggagttggttgataaggcccgggctaagcaacttcaaccccatgaatacaccacaggaacttttactctatccaaccttgggatgtttggcgttgaccgttttgatgccatcttaccgccaggaactggtgcaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="38007" stop="44023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38307" g_stop="38529" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38530" i_stop="38812" i_length="283">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38813" g_stop="39004" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="415" r_length="192" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39005" i_stop="39082" i_length="78">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39083" g_stop="39170" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="503" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39171" i_stop="43651" i_length="4481">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43652" g_stop="43722" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="574" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43723" i_stop="43805" i_length="83">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43806" g_stop="43817" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="586" r_length="12" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E469303" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38307" e_stop="38529"/>
          <exon e_start="38813" e_stop="39004"/>
          <exon e_start="39083" e_stop="39170"/>
          <exon e_start="43652" e_stop="43722"/>
          <exon e_start="43806" e_stop="43817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGTTGAAGCAGCAGCTGGTTCTGCTCCTATTGGTGTTGCTGCAGCGGCGAAGCCAAGTGGTGGTGCACCAGCGGCCCCAGCAGTAGAATTGGGGACGACTGTGCCATTTACGACAATGCAGAGTGCGGTGAGTCGAAATATGGTGGAGAGTTTGGCAGTTCCAACTTTTAGAGTGGGGTATACTATTACTACTAATGCCCTTGATGCTCTCTACAAGAAGGTATGGTTTTTTGCTTTGTATTATTTCCTTGATTAGTTGTAAAAAGATTGGATTTTTTGGGATAAACTGGGAAGTGTATGCTATGTCATAGTTTAGATAAGCTGAAAATGCTAGCTGAGATGGTATATCTGAAAATCAGTAGATAAATGTATTTACTGCAACATCTAGACATTATGAGATTCTCTGAGAATAGGCAAACAGAAGTGGATCTTCTATGTTTTAGTAAATTTTAAGATAAGCAGTTTCATCAATTCAGTTCCTGAATGTATTTGTGAATTTGTAGGTCAAGTCGAAAGGAGTGACAATGACAGCATTGTTGGCAAAAGCCACAGCACTTGCATTGGTGCAACATCCTGTTGTGAACTCTAGTTGTAGAGATGGGAAGAGTTTCACATATAACAGTAGTATTAACATTGCTGTTGCAGTCGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAGGTTAGTTTGAAAATCATTTTTTAATATTCTGATTTCACATATAGTGAAGTGATTGATATGATTAAATATTCATTACAGGTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAGGTATGCTATTACGTTAGATGAGTTAACAGTCTGATGTGATAGAGGTGTATACCTATCACCAGCTGATCATATTTATTTTTTTTGAAAACGATAATTGTTTCTATTTCTGTAGAACAGTAAATAGGTTTTCCTGAAAACCCTATTTACATAAGGAACTCTGACAATACTGACCTATCCCTACAGTGAGTCTAAGACATCAAAAATAGAGACGATATCGTTAGAGTAAATCTGATTACACCAAAAACACAGTGTCAAAAACTCTTAAGGTTCCTCTCTTTCCATATTGTGCACCAAATAGGGGCAGGACAATTCTTTAGTTACTTCTGTTTTTTTCTTGTGTCCCTGATTCTTCCTAGCTATGTAGAGCCTCTGAAATTCTCCCAGGCATGGACCAGGAGATGTTTTTAAGTCTGAGGAACAAGTTCCACAACTGCCAGTGACTCCACATATTGTTAGCTGCAACTGCCTGTCTTTATATTGGATGGTTTCTTGAACTAGATTCTTTAACTTGGATATTAGCTTACATCATTATTTCTGAAGTCCATATGAACAAGGCTCACACTCACTCAGTAGACTGATACATGCCTAGAACTGATTAAGAGATAGGAGTTGGTCTGCTACTACAAGATATATATTTGGAGTCTGGAGATAGCACTTAATGTTTCTTCAAAACTCCTTTTCCATATGTGCATGCTCCTCATGTTGAATTTGAGAACTTGTAACTTATTATCAAAAGGCTGGTATTATAGTTTGATGTTTGAGCTAAGTGGCCTTCAAAACTCCAAATGACAAAATTGAGGTACTCCTGCTAATCCAGTTTCACGCATTACGGGTGCTTTAGCCACCTTATGAACTGAGACTACAACATAGAACAAATAGTTGGTTTTTTTTTTAAAATCAGTAGTTGAGTGTTGCTAGGACTTGTTTCTTGAAGTTATGGTCCAACTTCAGAAAACAAGAATTTGGTACTTATGACTGCTTATAATATTACTAGTACAATTTTTTTAGTGGATCAAGTCCAGACTGCTAATTAAGTGAGTTTTTATTCCAGTTCATTTTCATAAGGGCATGGCTTCACAGCTACAAATAAGTTATTCCCCTTCTTTATGGTTTAGCATCATAATGTTCTTTACTTCAACAGCTTAAATGACAGGTCTGATCTGAACTTTCACTAAATGTAAAGAACACAACTAGTACAACATTTGTAGCTTAGTGCTGATGCATGTGTAAATGTTATTATGAGCACTTGTTGGAGAGACTGATGAAGATAAAAAGAAACTTTATTCCATCTTGATTATGTGATTCTGTTTGATTCAATCCAAAATTTAAGATATTAGTCTGATAAAATTATTAATGAAATTACTTTACCTACAAAGTTGTGTAGTACCCTCTCTCCCTCTTAAAATGCTTGTTTGTTTCTTTTAGTTGTGATATATTGTCATTTGATAAATCAGATCTTTTAAACGCTTATATTTCACAAAGAGTTTTGGGATCCCTGCTTACTATTTGTATACACCTAATTGCTAATTTATTTTATTTTTAATAAAATGAATCGGAATGAAAGGAAGAGCAGAATGAATACAAAGGATAATCTAGCTGACCGCAACCAAATAGATTAGAACACAATTGCAAAAGACAAATAAACCACATTTCCCCCAACAAATACGAAATAACTCATTTTTTAACTTTTCTCATAATAATCTTGTTGTGGACTACCAAAATTGGGATAATGAGTAATCGAAGAGAATTGAAGAATTAACACAGCCGCCTGTTCACCCATTTAAACTAGAAATAGCTGGCGGATGAGTAGTATATGTATAATATATGTATACAGATTATGAAAAGTATACAGTAAATCCAACCGGTTATTTAGTATAACAGAAAAGACCATTATCGAAGTTCTAATTTGTTAGTTAAACAAATTTGGTTTCTTAAAACTTTGGAAAGTGGTCAAGTTCAAAAAAAACTTTGGAAAGTGGTATAATAATGTTACTAAAAGAACAATATATGTCATTCTTGGTATATCACAAACTAGGACATATGTTCAGCATGGAGGGAGTACCTTTTATTCATTGGAATAGTTGGTTTGCTTCTTTTTATAAGGTATCAATTCCTACTTCCAGCGAAATCTGTCCTTTCTGTTTTTGTTTTTCCTGGGTTTTAGTTGGGGTTGGGCAGAGAATTGAGCATTCTACTTCGCTAGATATTACTAACTGGCAACTTGATAGGTTACGATGCTTATGTTCCTGTATTTTGTTTAACGCTCAAGCTAAGCAAATCACTTCTGATTTCGACCATATCTATATTAGTGAGATATGCATATCAATCTCACAGTTACTATTCTCAAAATATAGAATGGCATAGCAATCTCAAATAATGTCCTCAAAACAAAAGTGTTTTTGTTTATCCAACTTTCTGGACATTTTCTGAGGTTGAGGATGTTGCAGGCAATTGAAAGGGAAAGAAGGTGAAACGATTGAATGAGGTTAAAACCTTTCAAGTTTTGTCAAAGTCAAACTCAAAATTTTCAAGTTTTTAACCTTAAAAATGAGTAGGGTAGGATGATGAAGCATACTGCATGACCTTGTTGGGTTTTCTTTTCTTTTGTCTCCATTCCGAATGCTCATCATATTCGGATCTTCAAGACATTCTTGACAAGAACGTTTAATGTCCTATGGATAATGACCTGTGAATGGATCTTTGAGCCACCATACACTGTTACATTCTGAATTGAAATGTTAATCCAGTGTTTCCACAAGGCCTTGTAATAACGGGAATCATAGAATGATAAACATTATAGTGGAGATTTCATTATGGCAGCAAAAGTCCTCCTACAAGGGGGTTGCTTGCCTAGCTCACAAAGGCATCCTTTGCCAACATTTACAAATTATTGGGCCTAGCGTTAACTCAGTTATTCACTATAGTAGAAACAATTACTAAAAGCATTTAACACCTTACACTCATATAACGATCAAATCATCCATATGTTAAAAGGAAAAACCGAGGGAGAATTAACCCTTCGGGGTGGCCCAGTGGTTTAGGCTTGGGATTTATATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCTTTGCCTCTGGGTCGAGCTCGTTGCATCAGGCTTGCCTAGTGCAGGTTACGTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTACCCTGTGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATTCAAAAAAAAAAAAAACCAAGGGAGAATTTATCTAGATGAAGACATTTTATTATACCATGATTTTTGTAAAGGTTATAAGATGTTTTTCAACTACTACATAGCCACTTTATACAAGAGATAGAAAATTAGTACTTCACTTATTGAATATATATAGTACAAGTGGAATTCAAATAACATGAATAGTAGTCTTATACACATAAAGGACATAAAAACTCAATGCTTGAAAATACAGTGAGGAATCTCTGATATTGTAGAGACTTAATCGGTAATGGGCAAGACATAGGAAAAATAGGGATTGTTATATGAACTGGAGAACAAATAATACGATAGAGTTATTAAGCATGTCAAACAAGACATGTGATAATTGGATGTTATGGCAAAAGGACCCTTTAATAATGATCTGCATGGCACGAGATAGTGGAATGTTATATCAAGAGAGGGGGTAATGGCTGGAATTGAACCCCCATCAACAGTGGTTTGCATGGCATGGGATGATGGAGTTTTTATGGCAAGACATGGCATAATTGGTTTTTATGGTAAGGGGCCCATAAATAATGTTTTGCATGCATGCGATAGTGAGATTTTATGGCAAGGGGCCCTTCTTCTAGGGCATGTTCTCATCTTCAGAATGCTAAATTCCGTTTTTTTTTTTATATTTTATGTCCATTTTTTGTTGTTGGTGAAGTAGATATTTTACTTTGATGCCTTTGCACTTTTTCAATGGTCTCCTATTGTTTTCTGTGTATCAGCAATAATCTTGTACACTAAATTGCCGAACTATTTAGAGTTATTGATGTTATAGCCCAAATGATTATGTAGCTGTTCATGCATTTATGGTGGAAGCATGTACATTATCTCCTCTTGCAGGTAGAGATTAGGCCAGTTGTAATTTGGCATGCTTTTTCTGCACTGAAACAGTGATTAGTTTGAACTTTGGATGTACTCAATCAAAGATGCCTATTGGCCAAATATTAAAATATGTGAAAGAAAAGAAAATGTCTATTTCTTGTCTCCATGGCGGGAGATTAGTTAAGCTAGCTGTGTTTAGCGAGTTCTCTTTTTTTTTTTTTTTACAGTACAACAACTATAACTTAGTCCCTAACAAGTTGGGGTCGGCTATATGAATTTCCACTTCTTCATTTAAGCTCATTTCTTTTATCCAGCTGACTTCTCTGCTTTTGCATGTCAAGGTTCTTGTTGTTCATATGTTGTTTAGGAGTTTGATTGTTTTGGCTGTTGGATTTGTACTGCAGGCACTTTTACCCTATCCAACCTTGGAATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCACCAGGAACTGTAAGTTCCACTCTGATATGCCTCCTGCCTGATATGTGAATACTTCTGGTATTGTTTCTCATGTTGGTTCAACTCTTGTCTAGGGTGCAATTATG</genome_strand>
        <mrna_strand>GGATGTTGAAGCAGCAACTGGTTCTGCTCCTATTGGTGTTGCTGCAGCGGCAAAGCCAAGTGGTGGTGCACCAGCGGCTCCAGCAGTAGAATTGGGGACGACTGTGCCATTTACGACAATGCAGAATGCAGTGAGTCGAAATATGGTGGAGAGTTTGGCAGTTCCAACTTTTAGAGTGGGGTATACTATTACTACTAATGCCCTTGATGCTCTCTACAAGAAG...........................................................................................................................................................................................................................................................................................GTCAAGTCGAAAGGAGTGACAATGACAGCATTGTTGGCAAAAGCCACAGCACTTGCATTGGTGAAACATCCTGTTGTGAACTCTAGTTGTAGAGATGGGAAGAGTTTCACGTATAACAGTAGTATTAACATTGCTGTTGCAGTGGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAG..............................................................................GTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTTACTCTATCCAACCTTGGGATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCGCCAGGAACT...................................................................................GGTGCAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409966" ref_strand="+" ref_description="SGN-E409966 [PPI-15-L3]">
      <seq>gtgagtcgaaatatggtggagagtttggcagttccaacttttagagtggggtatactattactactaatgcccttgatgctctctacaagaaggtcaagtcgaaaggagtgacaatgacagcattgttggcaaaagccacagcacttgcattggtgaaacatcctgttgtgaactctagttgtagagatgggaagagtttcacgtataacagtagtattaacattgctgttgcagtggccatagatggtggcttgattactcctgtacttcaggatgctgacaaggttgatttatactcattgtcaaggaaatggaaggagttggttgataaggcccgggctaagcaacttcaaccccatgaatacaccacaggaacttttactctatccaaccttgggatgtttggcgttgaccgttttgatgccatcttaccgccaggaactggtgcaatcatggctgtaggagcatctcagcccacactttgtggcaccaaagatggtcaaattggcatgaaaaatcaaatgcaggtcaatgtcactgctgatcatcgggtaatatatggtgctgatttggcggctttcctgcaaaccttagcacagataattgaggatcctaaagaccttactctttaggttcttgtcctcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="38137" stop="44439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38437" g_stop="38529" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38530" i_stop="38812" i_length="283">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38813" g_stop="39004" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="285" r_length="192" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39005" i_stop="39082" i_length="78">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39083" g_stop="39170" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="373" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39171" i_stop="43651" i_length="4481">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43652" g_stop="43722" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="444" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43723" i_stop="43805" i_length="83">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43806" g_stop="43889" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="528" r_length="84" r_score="0.905"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43890" i_stop="44018" i_length="129">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44019" g_stop="44138" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="648" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E409966" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38437" e_stop="38529"/>
          <exon e_start="38813" e_stop="39004"/>
          <exon e_start="39083" e_stop="39170"/>
          <exon e_start="43652" e_stop="43722"/>
          <exon e_start="43806" e_stop="43889"/>
          <exon e_start="44019" e_stop="44138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGTCGAAATATGGTGGAGAGTTTGGCAGTTCCAACTTTTAGAGTGGGGTATACTATTACTACTAATGCCCTTGATGCTCTCTACAAGAAGGTATGGTTTTTTGCTTTGTATTATTTCCTTGATTAGTTGTAAAAAGATTGGATTTTTTGGGATAAACTGGGAAGTGTATGCTATGTCATAGTTTAGATAAGCTGAAAATGCTAGCTGAGATGGTATATCTGAAAATCAGTAGATAAATGTATTTACTGCAACATCTAGACATTATGAGATTCTCTGAGAATAGGCAAACAGAAGTGGATCTTCTATGTTTTAGTAAATTTTAAGATAAGCAGTTTCATCAATTCAGTTCCTGAATGTATTTGTGAATTTGTAGGTCAAGTCGAAAGGAGTGACAATGACAGCATTGTTGGCAAAAGCCACAGCACTTGCATTGGTGCAACATCCTGTTGTGAACTCTAGTTGTAGAGATGGGAAGAGTTTCACATATAACAGTAGTATTAACATTGCTGTTGCAGTCGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAGGTTAGTTTGAAAATCATTTTTTAATATTCTGATTTCACATATAGTGAAGTGATTGATATGATTAAATATTCATTACAGGTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAGGTATGCTATTACGTTAGATGAGTTAACAGTCTGATGTGATAGAGGTGTATACCTATCACCAGCTGATCATATTTATTTTTTTTGAAAACGATAATTGTTTCTATTTCTGTAGAACAGTAAATAGGTTTTCCTGAAAACCCTATTTACATAAGGAACTCTGACAATACTGACCTATCCCTACAGTGAGTCTAAGACATCAAAAATAGAGACGATATCGTTAGAGTAAATCTGATTACACCAAAAACACAGTGTCAAAAACTCTTAAGGTTCCTCTCTTTCCATATTGTGCACCAAATAGGGGCAGGACAATTCTTTAGTTACTTCTGTTTTTTTCTTGTGTCCCTGATTCTTCCTAGCTATGTAGAGCCTCTGAAATTCTCCCAGGCATGGACCAGGAGATGTTTTTAAGTCTGAGGAACAAGTTCCACAACTGCCAGTGACTCCACATATTGTTAGCTGCAACTGCCTGTCTTTATATTGGATGGTTTCTTGAACTAGATTCTTTAACTTGGATATTAGCTTACATCATTATTTCTGAAGTCCATATGAACAAGGCTCACACTCACTCAGTAGACTGATACATGCCTAGAACTGATTAAGAGATAGGAGTTGGTCTGCTACTACAAGATATATATTTGGAGTCTGGAGATAGCACTTAATGTTTCTTCAAAACTCCTTTTCCATATGTGCATGCTCCTCATGTTGAATTTGAGAACTTGTAACTTATTATCAAAAGGCTGGTATTATAGTTTGATGTTTGAGCTAAGTGGCCTTCAAAACTCCAAATGACAAAATTGAGGTACTCCTGCTAATCCAGTTTCACGCATTACGGGTGCTTTAGCCACCTTATGAACTGAGACTACAACATAGAACAAATAGTTGGTTTTTTTTTTAAAATCAGTAGTTGAGTGTTGCTAGGACTTGTTTCTTGAAGTTATGGTCCAACTTCAGAAAACAAGAATTTGGTACTTATGACTGCTTATAATATTACTAGTACAATTTTTTTAGTGGATCAAGTCCAGACTGCTAATTAAGTGAGTTTTTATTCCAGTTCATTTTCATAAGGGCATGGCTTCACAGCTACAAATAAGTTATTCCCCTTCTTTATGGTTTAGCATCATAATGTTCTTTACTTCAACAGCTTAAATGACAGGTCTGATCTGAACTTTCACTAAATGTAAAGAACACAACTAGTACAACATTTGTAGCTTAGTGCTGATGCATGTGTAAATGTTATTATGAGCACTTGTTGGAGAGACTGATGAAGATAAAAAGAAACTTTATTCCATCTTGATTATGTGATTCTGTTTGATTCAATCCAAAATTTAAGATATTAGTCTGATAAAATTATTAATGAAATTACTTTACCTACAAAGTTGTGTAGTACCCTCTCTCCCTCTTAAAATGCTTGTTTGTTTCTTTTAGTTGTGATATATTGTCATTTGATAAATCAGATCTTTTAAACGCTTATATTTCACAAAGAGTTTTGGGATCCCTGCTTACTATTTGTATACACCTAATTGCTAATTTATTTTATTTTTAATAAAATGAATCGGAATGAAAGGAAGAGCAGAATGAATACAAAGGATAATCTAGCTGACCGCAACCAAATAGATTAGAACACAATTGCAAAAGACAAATAAACCACATTTCCCCCAACAAATACGAAATAACTCATTTTTTAACTTTTCTCATAATAATCTTGTTGTGGACTACCAAAATTGGGATAATGAGTAATCGAAGAGAATTGAAGAATTAACACAGCCGCCTGTTCACCCATTTAAACTAGAAATAGCTGGCGGATGAGTAGTATATGTATAATATATGTATACAGATTATGAAAAGTATACAGTAAATCCAACCGGTTATTTAGTATAACAGAAAAGACCATTATCGAAGTTCTAATTTGTTAGTTAAACAAATTTGGTTTCTTAAAACTTTGGAAAGTGGTCAAGTTCAAAAAAAACTTTGGAAAGTGGTATAATAATGTTACTAAAAGAACAATATATGTCATTCTTGGTATATCACAAACTAGGACATATGTTCAGCATGGAGGGAGTACCTTTTATTCATTGGAATAGTTGGTTTGCTTCTTTTTATAAGGTATCAATTCCTACTTCCAGCGAAATCTGTCCTTTCTGTTTTTGTTTTTCCTGGGTTTTAGTTGGGGTTGGGCAGAGAATTGAGCATTCTACTTCGCTAGATATTACTAACTGGCAACTTGATAGGTTACGATGCTTATGTTCCTGTATTTTGTTTAACGCTCAAGCTAAGCAAATCACTTCTGATTTCGACCATATCTATATTAGTGAGATATGCATATCAATCTCACAGTTACTATTCTCAAAATATAGAATGGCATAGCAATCTCAAATAATGTCCTCAAAACAAAAGTGTTTTTGTTTATCCAACTTTCTGGACATTTTCTGAGGTTGAGGATGTTGCAGGCAATTGAAAGGGAAAGAAGGTGAAACGATTGAATGAGGTTAAAACCTTTCAAGTTTTGTCAAAGTCAAACTCAAAATTTTCAAGTTTTTAACCTTAAAAATGAGTAGGGTAGGATGATGAAGCATACTGCATGACCTTGTTGGGTTTTCTTTTCTTTTGTCTCCATTCCGAATGCTCATCATATTCGGATCTTCAAGACATTCTTGACAAGAACGTTTAATGTCCTATGGATAATGACCTGTGAATGGATCTTTGAGCCACCATACACTGTTACATTCTGAATTGAAATGTTAATCCAGTGTTTCCACAAGGCCTTGTAATAACGGGAATCATAGAATGATAAACATTATAGTGGAGATTTCATTATGGCAGCAAAAGTCCTCCTACAAGGGGGTTGCTTGCCTAGCTCACAAAGGCATCCTTTGCCAACATTTACAAATTATTGGGCCTAGCGTTAACTCAGTTATTCACTATAGTAGAAACAATTACTAAAAGCATTTAACACCTTACACTCATATAACGATCAAATCATCCATATGTTAAAAGGAAAAACCGAGGGAGAATTAACCCTTCGGGGTGGCCCAGTGGTTTAGGCTTGGGATTTATATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCTTTGCCTCTGGGTCGAGCTCGTTGCATCAGGCTTGCCTAGTGCAGGTTACGTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTACCCTGTGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATTCAAAAAAAAAAAAAACCAAGGGAGAATTTATCTAGATGAAGACATTTTATTATACCATGATTTTTGTAAAGGTTATAAGATGTTTTTCAACTACTACATAGCCACTTTATACAAGAGATAGAAAATTAGTACTTCACTTATTGAATATATATAGTACAAGTGGAATTCAAATAACATGAATAGTAGTCTTATACACATAAAGGACATAAAAACTCAATGCTTGAAAATACAGTGAGGAATCTCTGATATTGTAGAGACTTAATCGGTAATGGGCAAGACATAGGAAAAATAGGGATTGTTATATGAACTGGAGAACAAATAATACGATAGAGTTATTAAGCATGTCAAACAAGACATGTGATAATTGGATGTTATGGCAAAAGGACCCTTTAATAATGATCTGCATGGCACGAGATAGTGGAATGTTATATCAAGAGAGGGGGTAATGGCTGGAATTGAACCCCCATCAACAGTGGTTTGCATGGCATGGGATGATGGAGTTTTTATGGCAAGACATGGCATAATTGGTTTTTATGGTAAGGGGCCCATAAATAATGTTTTGCATGCATGCGATAGTGAGATTTTATGGCAAGGGGCCCTTCTTCTAGGGCATGTTCTCATCTTCAGAATGCTAAATTCCGTTTTTTTTTTTATATTTTATGTCCATTTTTTGTTGTTGGTGAAGTAGATATTTTACTTTGATGCCTTTGCACTTTTTCAATGGTCTCCTATTGTTTTCTGTGTATCAGCAATAATCTTGTACACTAAATTGCCGAACTATTTAGAGTTATTGATGTTATAGCCCAAATGATTATGTAGCTGTTCATGCATTTATGGTGGAAGCATGTACATTATCTCCTCTTGCAGGTAGAGATTAGGCCAGTTGTAATTTGGCATGCTTTTTCTGCACTGAAACAGTGATTAGTTTGAACTTTGGATGTACTCAATCAAAGATGCCTATTGGCCAAATATTAAAATATGTGAAAGAAAAGAAAATGTCTATTTCTTGTCTCCATGGCGGGAGATTAGTTAAGCTAGCTGTGTTTAGCGAGTTCTCTTTTTTTTTTTTTTTACAGTACAACAACTATAACTTAGTCCCTAACAAGTTGGGGTCGGCTATATGAATTTCCACTTCTTCATTTAAGCTCATTTCTTTTATCCAGCTGACTTCTCTGCTTTTGCATGTCAAGGTTCTTGTTGTTCATATGTTGTTTAGGAGTTTGATTGTTTTGGCTGTTGGATTTGTACTGCAGGCACTTTTACCCTATCCAACCTTGGAATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCACCAGGAACTGTAAGTTCCACTCTGATATGCCTCCTGCCTGATATGTGAATACTTCTGGTATTGTTTCTCATGTTGGTTCAACTCTTGTCTAGGGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAGGTAGAGTGATGGTTCATGTTTGCTATTGATCTTTGGCATGCTAGTTCTTTTTCTCAAAATAAATGCTTAGGATTTTGCACAATTATCCAATTTGTTGATGCTTAAGCTATTAAATGTTAAAAATTTCAGGTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAAT</genome_strand>
        <mrna_strand>GTGAGTCGAAATATGGTGGAGAGTTTGGCAGTTCCAACTTTTAGAGTGGGGTATACTATTACTACTAATGCCCTTGATGCTCTCTACAAGAAG...........................................................................................................................................................................................................................................................................................GTCAAGTCGAAAGGAGTGACAATGACAGCATTGTTGGCAAAAGCCACAGCACTTGCATTGGTGAAACATCCTGTTGTGAACTCTAGTTGTAGAGATGGGAAGAGTTTCACGTATAACAGTAGTATTAACATTGCTGTTGCAGTGGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAG..............................................................................GTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTTACTCTATCCAACCTTGGGATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCGCCAGGAACT...................................................................................GGTGCAATCATGGCTGTAGGAGCATCTCAGCCCACACTTTGTGGCACCAAAGATGGTCAAATTGGCATGAAAAATCAAATGCAG.................................................................................................................................GTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGTTCTTGTCCTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427342" ref_strand="-" ref_description="SGN-E427342 [STM-48-E6]">
      <seq>ctactaatgcccttgatgctctctacaagaaggtcaagtcgaaaggagtgacaatgacagcattgttggcaaaagccacagcacttgcattggtgaaacatcctgttgtgaactctagttgtagagatgggaagagtttcacgtataacagtagtattaacattgctgttgcagtggccatagatggtggcttgattactcctgtacttcaggatgctgacaaggttgatttatactcattgtcaaggaaatggaaggagttggttgataaggcccgggctaagcaacttcaaccccatgaatacaccacaggaacttttactctatccaaccttgggatgtttggcgttgaccgttttgatgccatcttaccgccaggaactggtgcaatcatggctgtaggagcatctcagcccacacttgttggcaccaaagatggtcaaattggcatgaaaaatcaaatgcaggtcaatgtcactgctgatcatcgggtaatatatggtgctgatttggcggctttcctgcaaaccttagcacagataattgaggatcctaaagaccttactctttaggttcttgtcctcattgtgggagattagatgttttgtagtgtaatttgctcgagtttcagccaggagcttcatggagtgaacagaaaccatatgctataacatctgaagcatcatcttagtcacaattctgaagatgaatggaaatggatggttaggtcattttttcgcgtggttaatcttttctttttattgaagtgtaaactcatgaggacatttttcatggctgccataaaattatggcctcaagatgagctctttgttgcttcatcattcaaatattgaagaaaaactttctattgattctatatttaagagtgttcttgttgtggagttgtatctgcagttcactattgccattacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="38198" stop="44786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38498" g_stop="38529" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38530" i_stop="38812" i_length="283">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38813" g_stop="39004" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="224" r_length="192" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39005" i_stop="39082" i_length="78">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39083" g_stop="39170" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="312" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39171" i_stop="43651" i_length="4481">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43652" g_stop="43722" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="383" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43723" i_stop="43805" i_length="83">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43806" g_stop="43889" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="467" r_length="84" r_score="0.929"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43890" i_stop="44018" i_length="129">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44019" g_stop="44485" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="935" r_length="468" r_score="0.944"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44486" i_stop="44541" i_length="56">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44542" g_stop="44555" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="936" r_stop="949" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E427342" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427342" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38498" e_stop="38529"/>
          <exon e_start="38813" e_stop="39004"/>
          <exon e_start="39083" e_stop="39170"/>
          <exon e_start="43652" e_stop="43722"/>
          <exon e_start="43806" e_stop="43889"/>
          <exon e_start="44019" e_stop="44485"/>
          <exon e_start="44542" e_stop="44555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTAATGCCCTTGATGCTCTCTACAAGAAGGTATGGTTTTTTGCTTTGTATTATTTCCTTGATTAGTTGTAAAAAGATTGGATTTTTTGGGATAAACTGGGAAGTGTATGCTATGTCATAGTTTAGATAAGCTGAAAATGCTAGCTGAGATGGTATATCTGAAAATCAGTAGATAAATGTATTTACTGCAACATCTAGACATTATGAGATTCTCTGAGAATAGGCAAACAGAAGTGGATCTTCTATGTTTTAGTAAATTTTAAGATAAGCAGTTTCATCAATTCAGTTCCTGAATGTATTTGTGAATTTGTAGGTCAAGTCGAAAGGAGTGACAATGACAGCATTGTTGGCAAAAGCCACAGCACTTGCATTGGTGCAACATCCTGTTGTGAACTCTAGTTGTAGAGATGGGAAGAGTTTCACATATAACAGTAGTATTAACATTGCTGTTGCAGTCGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAGGTTAGTTTGAAAATCATTTTTTAATATTCTGATTTCACATATAGTGAAGTGATTGATATGATTAAATATTCATTACAGGTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAGGTATGCTATTACGTTAGATGAGTTAACAGTCTGATGTGATAGAGGTGTATACCTATCACCAGCTGATCATATTTATTTTTTTTGAAAACGATAATTGTTTCTATTTCTGTAGAACAGTAAATAGGTTTTCCTGAAAACCCTATTTACATAAGGAACTCTGACAATACTGACCTATCCCTACAGTGAGTCTAAGACATCAAAAATAGAGACGATATCGTTAGAGTAAATCTGATTACACCAAAAACACAGTGTCAAAAACTCTTAAGGTTCCTCTCTTTCCATATTGTGCACCAAATAGGGGCAGGACAATTCTTTAGTTACTTCTGTTTTTTTCTTGTGTCCCTGATTCTTCCTAGCTATGTAGAGCCTCTGAAATTCTCCCAGGCATGGACCAGGAGATGTTTTTAAGTCTGAGGAACAAGTTCCACAACTGCCAGTGACTCCACATATTGTTAGCTGCAACTGCCTGTCTTTATATTGGATGGTTTCTTGAACTAGATTCTTTAACTTGGATATTAGCTTACATCATTATTTCTGAAGTCCATATGAACAAGGCTCACACTCACTCAGTAGACTGATACATGCCTAGAACTGATTAAGAGATAGGAGTTGGTCTGCTACTACAAGATATATATTTGGAGTCTGGAGATAGCACTTAATGTTTCTTCAAAACTCCTTTTCCATATGTGCATGCTCCTCATGTTGAATTTGAGAACTTGTAACTTATTATCAAAAGGCTGGTATTATAGTTTGATGTTTGAGCTAAGTGGCCTTCAAAACTCCAAATGACAAAATTGAGGTACTCCTGCTAATCCAGTTTCACGCATTACGGGTGCTTTAGCCACCTTATGAACTGAGACTACAACATAGAACAAATAGTTGGTTTTTTTTTTAAAATCAGTAGTTGAGTGTTGCTAGGACTTGTTTCTTGAAGTTATGGTCCAACTTCAGAAAACAAGAATTTGGTACTTATGACTGCTTATAATATTACTAGTACAATTTTTTTAGTGGATCAAGTCCAGACTGCTAATTAAGTGAGTTTTTATTCCAGTTCATTTTCATAAGGGCATGGCTTCACAGCTACAAATAAGTTATTCCCCTTCTTTATGGTTTAGCATCATAATGTTCTTTACTTCAACAGCTTAAATGACAGGTCTGATCTGAACTTTCACTAAATGTAAAGAACACAACTAGTACAACATTTGTAGCTTAGTGCTGATGCATGTGTAAATGTTATTATGAGCACTTGTTGGAGAGACTGATGAAGATAAAAAGAAACTTTATTCCATCTTGATTATGTGATTCTGTTTGATTCAATCCAAAATTTAAGATATTAGTCTGATAAAATTATTAATGAAATTACTTTACCTACAAAGTTGTGTAGTACCCTCTCTCCCTCTTAAAATGCTTGTTTGTTTCTTTTAGTTGTGATATATTGTCATTTGATAAATCAGATCTTTTAAACGCTTATATTTCACAAAGAGTTTTGGGATCCCTGCTTACTATTTGTATACACCTAATTGCTAATTTATTTTATTTTTAATAAAATGAATCGGAATGAAAGGAAGAGCAGAATGAATACAAAGGATAATCTAGCTGACCGCAACCAAATAGATTAGAACACAATTGCAAAAGACAAATAAACCACATTTCCCCCAACAAATACGAAATAACTCATTTTTTAACTTTTCTCATAATAATCTTGTTGTGGACTACCAAAATTGGGATAATGAGTAATCGAAGAGAATTGAAGAATTAACACAGCCGCCTGTTCACCCATTTAAACTAGAAATAGCTGGCGGATGAGTAGTATATGTATAATATATGTATACAGATTATGAAAAGTATACAGTAAATCCAACCGGTTATTTAGTATAACAGAAAAGACCATTATCGAAGTTCTAATTTGTTAGTTAAACAAATTTGGTTTCTTAAAACTTTGGAAAGTGGTCAAGTTCAAAAAAAACTTTGGAAAGTGGTATAATAATGTTACTAAAAGAACAATATATGTCATTCTTGGTATATCACAAACTAGGACATATGTTCAGCATGGAGGGAGTACCTTTTATTCATTGGAATAGTTGGTTTGCTTCTTTTTATAAGGTATCAATTCCTACTTCCAGCGAAATCTGTCCTTTCTGTTTTTGTTTTTCCTGGGTTTTAGTTGGGGTTGGGCAGAGAATTGAGCATTCTACTTCGCTAGATATTACTAACTGGCAACTTGATAGGTTACGATGCTTATGTTCCTGTATTTTGTTTAACGCTCAAGCTAAGCAAATCACTTCTGATTTCGACCATATCTATATTAGTGAGATATGCATATCAATCTCACAGTTACTATTCTCAAAATATAGAATGGCATAGCAATCTCAAATAATGTCCTCAAAACAAAAGTGTTTTTGTTTATCCAACTTTCTGGACATTTTCTGAGGTTGAGGATGTTGCAGGCAATTGAAAGGGAAAGAAGGTGAAACGATTGAATGAGGTTAAAACCTTTCAAGTTTTGTCAAAGTCAAACTCAAAATTTTCAAGTTTTTAACCTTAAAAATGAGTAGGGTAGGATGATGAAGCATACTGCATGACCTTGTTGGGTTTTCTTTTCTTTTGTCTCCATTCCGAATGCTCATCATATTCGGATCTTCAAGACATTCTTGACAAGAACGTTTAATGTCCTATGGATAATGACCTGTGAATGGATCTTTGAGCCACCATACACTGTTACATTCTGAATTGAAATGTTAATCCAGTGTTTCCACAAGGCCTTGTAATAACGGGAATCATAGAATGATAAACATTATAGTGGAGATTTCATTATGGCAGCAAAAGTCCTCCTACAAGGGGGTTGCTTGCCTAGCTCACAAAGGCATCCTTTGCCAACATTTACAAATTATTGGGCCTAGCGTTAACTCAGTTATTCACTATAGTAGAAACAATTACTAAAAGCATTTAACACCTTACACTCATATAACGATCAAATCATCCATATGTTAAAAGGAAAAACCGAGGGAGAATTAACCCTTCGGGGTGGCCCAGTGGTTTAGGCTTGGGATTTATATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCTTTGCCTCTGGGTCGAGCTCGTTGCATCAGGCTTGCCTAGTGCAGGTTACGTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTACCCTGTGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATTCAAAAAAAAAAAAAACCAAGGGAGAATTTATCTAGATGAAGACATTTTATTATACCATGATTTTTGTAAAGGTTATAAGATGTTTTTCAACTACTACATAGCCACTTTATACAAGAGATAGAAAATTAGTACTTCACTTATTGAATATATATAGTACAAGTGGAATTCAAATAACATGAATAGTAGTCTTATACACATAAAGGACATAAAAACTCAATGCTTGAAAATACAGTGAGGAATCTCTGATATTGTAGAGACTTAATCGGTAATGGGCAAGACATAGGAAAAATAGGGATTGTTATATGAACTGGAGAACAAATAATACGATAGAGTTATTAAGCATGTCAAACAAGACATGTGATAATTGGATGTTATGGCAAAAGGACCCTTTAATAATGATCTGCATGGCACGAGATAGTGGAATGTTATATCAAGAGAGGGGGTAATGGCTGGAATTGAACCCCCATCAACAGTGGTTTGCATGGCATGGGATGATGGAGTTTTTATGGCAAGACATGGCATAATTGGTTTTTATGGTAAGGGGCCCATAAATAATGTTTTGCATGCATGCGATAGTGAGATTTTATGGCAAGGGGCCCTTCTTCTAGGGCATGTTCTCATCTTCAGAATGCTAAATTCCGTTTTTTTTTTTATATTTTATGTCCATTTTTTGTTGTTGGTGAAGTAGATATTTTACTTTGATGCCTTTGCACTTTTTCAATGGTCTCCTATTGTTTTCTGTGTATCAGCAATAATCTTGTACACTAAATTGCCGAACTATTTAGAGTTATTGATGTTATAGCCCAAATGATTATGTAGCTGTTCATGCATTTATGGTGGAAGCATGTACATTATCTCCTCTTGCAGGTAGAGATTAGGCCAGTTGTAATTTGGCATGCTTTTTCTGCACTGAAACAGTGATTAGTTTGAACTTTGGATGTACTCAATCAAAGATGCCTATTGGCCAAATATTAAAATATGTGAAAGAAAAGAAAATGTCTATTTCTTGTCTCCATGGCGGGAGATTAGTTAAGCTAGCTGTGTTTAGCGAGTTCTCTTTTTTTTTTTTTTTACAGTACAACAACTATAACTTAGTCCCTAACAAGTTGGGGTCGGCTATATGAATTTCCACTTCTTCATTTAAGCTCATTTCTTTTATCCAGCTGACTTCTCTGCTTTTGCATGTCAAGGTTCTTGTTGTTCATATGTTGTTTAGGAGTTTGATTGTTTTGGCTGTTGGATTTGTACTGCAGGCACTTTTACCCTATCCAACCTTGGAATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCACCAGGAACTGTAAGTTCCACTCTGATATGCCTCCTGCCTGATATGTGAATACTTCTGGTATTGTTTCTCATGTTGGTTCAACTCTTGTCTAGGGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAGGTAGAGTGATGGTTCATGTTTGCTATTGATCTTTGGCATGCTAGTTCTTTTTCTCAAAATAAATGCTTAGGATTTTGCACAATTATCCAATTTGTTGATGCTTAAGCTATTAAATGTTAAAAATTTCAGGTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTG--CAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTACAAAATGACTTCTTTCCAGTCTAATGCTTCAATTTGCCATTTAATATGATGTTCCACCAGAAAAACACCTAAGA</genome_strand>
        <mrna_strand>CTACTAATGCCCTTGATGCTCTCTACAAGAAG...........................................................................................................................................................................................................................................................................................GTCAAGTCGAAAGGAGTGACAATGACAGCATTGTTGGCAAAAGCCACAGCACTTGCATTGGTGAAACATCCTGTTGTGAACTCTAGTTGTAGAGATGGGAAGAGTTTCACGTATAACAGTAGTATTAACATTGCTGTTGCAGTGGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAG..............................................................................GTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTTACTCTATCCAACCTTGGGATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCGCCAGGAACT...................................................................................GGTGCAATCATGGCTGTAGGAGCATCTCAGCCCACACTTGTTGGCACCAAAGATGGTCAAATTGGCATGAAAAATCAAATGCAG.................................................................................................................................GTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGTTCTTGTCCTC-ATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTTAGTCACAATTCTGAAGATGAATGGAAATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTCTTTTTATTGAAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGAAGAAAAACTTTCTATTGATTCTATATTTAAGAGTGTTCTTGTTGTGGAGTTGTATCTGCAGTTCACTATTGCCATTACAAA........................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561926" ref_strand="+" ref_description="SGN-E561926 [20395]">
      <seq>atcggcacgagggttggcaaaagcacagcacttgcattggtgaaacatcctgttgtgaactctaggttgtagagatgggaagagtttcacgtataacagtagtattaacattgctgttgcagtggccatagatggtggcttgattactcctgtacttcaggatgctgacaaggttgatttatactcattgtcaaggaaatggaaggagttggttgataaggcccgggctaagcaacttcaaccccatgaatacaccacaggaacttttactctatccaaccttgggatgtttggcgttgaccgttttgatgccatcttaccgccaggaactggtgcaatcatggctgtaggagcatctcagcccacacttgttggcaccaaagatggtcaaattggcatgaaaaatcaaatgcaggtcaatgtcactgctgatcatcgggtaatatatggtgctgatttggcggctttcctgcaaaccttagcacagataattgaggatcctaaagaccttactctttaggttcttgtcctcattgtgggagattagatgttttgtagtgtaatttgctcgagtttcagccaggagcttcatggagtgaacagaaaccatatgctataacatctgaagcatcatcttagtcacaattctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="38534" stop="44555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38833" g_stop="39004" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39005" i_stop="39082" i_length="78">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39083" g_stop="39170" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="260" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39171" i_stop="43651" i_length="4481">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43652" g_stop="43722" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="331" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43723" i_stop="43805" i_length="83">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43806" g_stop="43889" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="415" r_length="84" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43890" i_stop="44018" i_length="129">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44019" g_stop="44255" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="651" r_length="236" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E561926" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38833" e_stop="39004"/>
          <exon e_start="39083" e_stop="39170"/>
          <exon e_start="43652" e_stop="43722"/>
          <exon e_start="43806" e_stop="43889"/>
          <exon e_start="44019" e_stop="44255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACAGCATTGTTGGCAAAAGCCACAGCACTTGCATTGGTGCAACATCCTGTTGTGAACTCTA-GTTGTAGAGATGGGAAGAGTTTCACATATAACAGTAGTATTAACATTGCTGTTGCAGTCGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAGGTTAGTTTGAAAATCATTTTTTAATATTCTGATTTCACATATAGTGAAGTGATTGATATGATTAAATATTCATTACAGGTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAGGTATGCTATTACGTTAGATGAGTTAACAGTCTGATGTGATAGAGGTGTATACCTATCACCAGCTGATCATATTTATTTTTTTTGAAAACGATAATTGTTTCTATTTCTGTAGAACAGTAAATAGGTTTTCCTGAAAACCCTATTTACATAAGGAACTCTGACAATACTGACCTATCCCTACAGTGAGTCTAAGACATCAAAAATAGAGACGATATCGTTAGAGTAAATCTGATTACACCAAAAACACAGTGTCAAAAACTCTTAAGGTTCCTCTCTTTCCATATTGTGCACCAAATAGGGGCAGGACAATTCTTTAGTTACTTCTGTTTTTTTCTTGTGTCCCTGATTCTTCCTAGCTATGTAGAGCCTCTGAAATTCTCCCAGGCATGGACCAGGAGATGTTTTTAAGTCTGAGGAACAAGTTCCACAACTGCCAGTGACTCCACATATTGTTAGCTGCAACTGCCTGTCTTTATATTGGATGGTTTCTTGAACTAGATTCTTTAACTTGGATATTAGCTTACATCATTATTTCTGAAGTCCATATGAACAAGGCTCACACTCACTCAGTAGACTGATACATGCCTAGAACTGATTAAGAGATAGGAGTTGGTCTGCTACTACAAGATATATATTTGGAGTCTGGAGATAGCACTTAATGTTTCTTCAAAACTCCTTTTCCATATGTGCATGCTCCTCATGTTGAATTTGAGAACTTGTAACTTATTATCAAAAGGCTGGTATTATAGTTTGATGTTTGAGCTAAGTGGCCTTCAAAACTCCAAATGACAAAATTGAGGTACTCCTGCTAATCCAGTTTCACGCATTACGGGTGCTTTAGCCACCTTATGAACTGAGACTACAACATAGAACAAATAGTTGGTTTTTTTTTTAAAATCAGTAGTTGAGTGTTGCTAGGACTTGTTTCTTGAAGTTATGGTCCAACTTCAGAAAACAAGAATTTGGTACTTATGACTGCTTATAATATTACTAGTACAATTTTTTTAGTGGATCAAGTCCAGACTGCTAATTAAGTGAGTTTTTATTCCAGTTCATTTTCATAAGGGCATGGCTTCACAGCTACAAATAAGTTATTCCCCTTCTTTATGGTTTAGCATCATAATGTTCTTTACTTCAACAGCTTAAATGACAGGTCTGATCTGAACTTTCACTAAATGTAAAGAACACAACTAGTACAACATTTGTAGCTTAGTGCTGATGCATGTGTAAATGTTATTATGAGCACTTGTTGGAGAGACTGATGAAGATAAAAAGAAACTTTATTCCATCTTGATTATGTGATTCTGTTTGATTCAATCCAAAATTTAAGATATTAGTCTGATAAAATTATTAATGAAATTACTTTACCTACAAAGTTGTGTAGTACCCTCTCTCCCTCTTAAAATGCTTGTTTGTTTCTTTTAGTTGTGATATATTGTCATTTGATAAATCAGATCTTTTAAACGCTTATATTTCACAAAGAGTTTTGGGATCCCTGCTTACTATTTGTATACACCTAATTGCTAATTTATTTTATTTTTAATAAAATGAATCGGAATGAAAGGAAGAGCAGAATGAATACAAAGGATAATCTAGCTGACCGCAACCAAATAGATTAGAACACAATTGCAAAAGACAAATAAACCACATTTCCCCCAACAAATACGAAATAACTCATTTTTTAACTTTTCTCATAATAATCTTGTTGTGGACTACCAAAATTGGGATAATGAGTAATCGAAGAGAATTGAAGAATTAACACAGCCGCCTGTTCACCCATTTAAACTAGAAATAGCTGGCGGATGAGTAGTATATGTATAATATATGTATACAGATTATGAAAAGTATACAGTAAATCCAACCGGTTATTTAGTATAACAGAAAAGACCATTATCGAAGTTCTAATTTGTTAGTTAAACAAATTTGGTTTCTTAAAACTTTGGAAAGTGGTCAAGTTCAAAAAAAACTTTGGAAAGTGGTATAATAATGTTACTAAAAGAACAATATATGTCATTCTTGGTATATCACAAACTAGGACATATGTTCAGCATGGAGGGAGTACCTTTTATTCATTGGAATAGTTGGTTTGCTTCTTTTTATAAGGTATCAATTCCTACTTCCAGCGAAATCTGTCCTTTCTGTTTTTGTTTTTCCTGGGTTTTAGTTGGGGTTGGGCAGAGAATTGAGCATTCTACTTCGCTAGATATTACTAACTGGCAACTTGATAGGTTACGATGCTTATGTTCCTGTATTTTGTTTAACGCTCAAGCTAAGCAAATCACTTCTGATTTCGACCATATCTATATTAGTGAGATATGCATATCAATCTCACAGTTACTATTCTCAAAATATAGAATGGCATAGCAATCTCAAATAATGTCCTCAAAACAAAAGTGTTTTTGTTTATCCAACTTTCTGGACATTTTCTGAGGTTGAGGATGTTGCAGGCAATTGAAAGGGAAAGAAGGTGAAACGATTGAATGAGGTTAAAACCTTTCAAGTTTTGTCAAAGTCAAACTCAAAATTTTCAAGTTTTTAACCTTAAAAATGAGTAGGGTAGGATGATGAAGCATACTGCATGACCTTGTTGGGTTTTCTTTTCTTTTGTCTCCATTCCGAATGCTCATCATATTCGGATCTTCAAGACATTCTTGACAAGAACGTTTAATGTCCTATGGATAATGACCTGTGAATGGATCTTTGAGCCACCATACACTGTTACATTCTGAATTGAAATGTTAATCCAGTGTTTCCACAAGGCCTTGTAATAACGGGAATCATAGAATGATAAACATTATAGTGGAGATTTCATTATGGCAGCAAAAGTCCTCCTACAAGGGGGTTGCTTGCCTAGCTCACAAAGGCATCCTTTGCCAACATTTACAAATTATTGGGCCTAGCGTTAACTCAGTTATTCACTATAGTAGAAACAATTACTAAAAGCATTTAACACCTTACACTCATATAACGATCAAATCATCCATATGTTAAAAGGAAAAACCGAGGGAGAATTAACCCTTCGGGGTGGCCCAGTGGTTTAGGCTTGGGATTTATATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCTTTGCCTCTGGGTCGAGCTCGTTGCATCAGGCTTGCCTAGTGCAGGTTACGTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTACCCTGTGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATTCAAAAAAAAAAAAAACCAAGGGAGAATTTATCTAGATGAAGACATTTTATTATACCATGATTTTTGTAAAGGTTATAAGATGTTTTTCAACTACTACATAGCCACTTTATACAAGAGATAGAAAATTAGTACTTCACTTATTGAATATATATAGTACAAGTGGAATTCAAATAACATGAATAGTAGTCTTATACACATAAAGGACATAAAAACTCAATGCTTGAAAATACAGTGAGGAATCTCTGATATTGTAGAGACTTAATCGGTAATGGGCAAGACATAGGAAAAATAGGGATTGTTATATGAACTGGAGAACAAATAATACGATAGAGTTATTAAGCATGTCAAACAAGACATGTGATAATTGGATGTTATGGCAAAAGGACCCTTTAATAATGATCTGCATGGCACGAGATAGTGGAATGTTATATCAAGAGAGGGGGTAATGGCTGGAATTGAACCCCCATCAACAGTGGTTTGCATGGCATGGGATGATGGAGTTTTTATGGCAAGACATGGCATAATTGGTTTTTATGGTAAGGGGCCCATAAATAATGTTTTGCATGCATGCGATAGTGAGATTTTATGGCAAGGGGCCCTTCTTCTAGGGCATGTTCTCATCTTCAGAATGCTAAATTCCGTTTTTTTTTTTATATTTTATGTCCATTTTTTGTTGTTGGTGAAGTAGATATTTTACTTTGATGCCTTTGCACTTTTTCAATGGTCTCCTATTGTTTTCTGTGTATCAGCAATAATCTTGTACACTAAATTGCCGAACTATTTAGAGTTATTGATGTTATAGCCCAAATGATTATGTAGCTGTTCATGCATTTATGGTGGAAGCATGTACATTATCTCCTCTTGCAGGTAGAGATTAGGCCAGTTGTAATTTGGCATGCTTTTTCTGCACTGAAACAGTGATTAGTTTGAACTTTGGATGTACTCAATCAAAGATGCCTATTGGCCAAATATTAAAATATGTGAAAGAAAAGAAAATGTCTATTTCTTGTCTCCATGGCGGGAGATTAGTTAAGCTAGCTGTGTTTAGCGAGTTCTCTTTTTTTTTTTTTTTACAGTACAACAACTATAACTTAGTCCCTAACAAGTTGGGGTCGGCTATATGAATTTCCACTTCTTCATTTAAGCTCATTTCTTTTATCCAGCTGACTTCTCTGCTTTTGCATGTCAAGGTTCTTGTTGTTCATATGTTGTTTAGGAGTTTGATTGTTTTGGCTGTTGGATTTGTACTGCAGGCACTTTTACCCTATCCAACCTTGGAATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCACCAGGAACTGTAAGTTCCACTCTGATATGCCTCCTGCCTGATATGTGAATACTTCTGGTATTGTTTCTCATGTTGGTTCAACTCTTGTCTAGGGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAGGTAGAGTGATGGTTCATGTTTGCTATTGATCTTTGGCATGCTAGTTCTTTTTCTCAAAATAAATGCTTAGGATTTTGCACAATTATCCAATTTGTTGATGCTTAAGCTATTAAATGTTAAAAATTTCAGGTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGA</genome_strand>
        <mrna_strand>ATCGGCACGAGGGTTGGCAAAAG-CACAGCACTTGCATTGGTGAAACATCCTGTTGTGAACTCTAGGTTGTAGAGATGGGAAGAGTTTCACGTATAACAGTAGTATTAACATTGCTGTTGCAGTGGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAG..............................................................................GTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTTACTCTATCCAACCTTGGGATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCGCCAGGAACT...................................................................................GGTGCAATCATGGCTGTAGGAGCATCTCAGCCCACACTTGTTGGCACCAAAGATGGTCAAATTGGCATGAAAAATCAAATGCAG.................................................................................................................................GTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGTTCTTGTCCTC-ATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTTAGTCACAATTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E695139" ref_strand="+" ref_description="SGN-E695139 [LH_Ea05M01](-)">
      <seq>acagcacttgcattggtgcaacatcctgttgtgaactctagttgtagagatgggaagagtttcacatataacagtagtattaacattgctgttgcggtcgccatagatggtggcttgattactcctgtacttcaggatgctgacaaggttgatttatactcattgtcaaggaaatggaaggagttggttgataaggcccgggctaagcaacttcaaccccatgaatacaccacaggcacttttactctatccaaccttggaatgtttggcgttgaccgttttgatgccatcttaccaccaggaactggtgcaatcatggctgtaggagcatctcaacccacacttgttggaaccaaagatggtcgaattggcatgaaaaaccaaatgcaggtcaatgtcactgctgatcatcgggtaatatatggtgctgatttggcggctttcctgcaaaccttagcacagataattgaggatcctaaagaccttactctttagtctcttgtcctcaattgtgggagattagatgttttgtagtgtaatttgctcgagtttcagccaggagcttcatggagtgaacagaaaccatatgctataacatctgaagcatcatctaagtcacaattcagaagatgaatggaaatggatggttaggtcattttttcgcgtggttaatcttttctttttattggagtgtaaactcatgaggacatttttcatggctgccataaaattatggcctcaagatgagctctttgttgcttcatcattcaaatattgttgcaactttctattgattctatatttaagagtgttctgcaaatgcagttgtatctgcagttcactattgccattncaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="38558" stop="44786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38858" g_stop="39004" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39005" i_stop="39082" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39083" g_stop="39170" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="235" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39171" i_stop="43651" i_length="4481">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43652" g_stop="43722" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="306" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43723" i_stop="43805" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43806" g_stop="43889" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="390" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43890" i_stop="44018" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44019" g_stop="44485" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="857" r_length="467" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44486" i_stop="44541" i_length="56">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44542" g_stop="44548" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="864" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E695139" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38858" e_stop="39004"/>
          <exon e_start="39083" e_stop="39170"/>
          <exon e_start="43652" e_stop="43722"/>
          <exon e_start="43806" e_stop="43889"/>
          <exon e_start="44019" e_stop="44485"/>
          <exon e_start="44542" e_stop="44548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCACTTGCATTGGTGCAACATCCTGTTGTGAACTCTAGTTGTAGAGATGGGAAGAGTTTCACATATAACAGTAGTATTAACATTGCTGTTGCAGTCGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAGGTTAGTTTGAAAATCATTTTTTAATATTCTGATTTCACATATAGTGAAGTGATTGATATGATTAAATATTCATTACAGGTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAGGTATGCTATTACGTTAGATGAGTTAACAGTCTGATGTGATAGAGGTGTATACCTATCACCAGCTGATCATATTTATTTTTTTTGAAAACGATAATTGTTTCTATTTCTGTAGAACAGTAAATAGGTTTTCCTGAAAACCCTATTTACATAAGGAACTCTGACAATACTGACCTATCCCTACAGTGAGTCTAAGACATCAAAAATAGAGACGATATCGTTAGAGTAAATCTGATTACACCAAAAACACAGTGTCAAAAACTCTTAAGGTTCCTCTCTTTCCATATTGTGCACCAAATAGGGGCAGGACAATTCTTTAGTTACTTCTGTTTTTTTCTTGTGTCCCTGATTCTTCCTAGCTATGTAGAGCCTCTGAAATTCTCCCAGGCATGGACCAGGAGATGTTTTTAAGTCTGAGGAACAAGTTCCACAACTGCCAGTGACTCCACATATTGTTAGCTGCAACTGCCTGTCTTTATATTGGATGGTTTCTTGAACTAGATTCTTTAACTTGGATATTAGCTTACATCATTATTTCTGAAGTCCATATGAACAAGGCTCACACTCACTCAGTAGACTGATACATGCCTAGAACTGATTAAGAGATAGGAGTTGGTCTGCTACTACAAGATATATATTTGGAGTCTGGAGATAGCACTTAATGTTTCTTCAAAACTCCTTTTCCATATGTGCATGCTCCTCATGTTGAATTTGAGAACTTGTAACTTATTATCAAAAGGCTGGTATTATAGTTTGATGTTTGAGCTAAGTGGCCTTCAAAACTCCAAATGACAAAATTGAGGTACTCCTGCTAATCCAGTTTCACGCATTACGGGTGCTTTAGCCACCTTATGAACTGAGACTACAACATAGAACAAATAGTTGGTTTTTTTTTTAAAATCAGTAGTTGAGTGTTGCTAGGACTTGTTTCTTGAAGTTATGGTCCAACTTCAGAAAACAAGAATTTGGTACTTATGACTGCTTATAATATTACTAGTACAATTTTTTTAGTGGATCAAGTCCAGACTGCTAATTAAGTGAGTTTTTATTCCAGTTCATTTTCATAAGGGCATGGCTTCACAGCTACAAATAAGTTATTCCCCTTCTTTATGGTTTAGCATCATAATGTTCTTTACTTCAACAGCTTAAATGACAGGTCTGATCTGAACTTTCACTAAATGTAAAGAACACAACTAGTACAACATTTGTAGCTTAGTGCTGATGCATGTGTAAATGTTATTATGAGCACTTGTTGGAGAGACTGATGAAGATAAAAAGAAACTTTATTCCATCTTGATTATGTGATTCTGTTTGATTCAATCCAAAATTTAAGATATTAGTCTGATAAAATTATTAATGAAATTACTTTACCTACAAAGTTGTGTAGTACCCTCTCTCCCTCTTAAAATGCTTGTTTGTTTCTTTTAGTTGTGATATATTGTCATTTGATAAATCAGATCTTTTAAACGCTTATATTTCACAAAGAGTTTTGGGATCCCTGCTTACTATTTGTATACACCTAATTGCTAATTTATTTTATTTTTAATAAAATGAATCGGAATGAAAGGAAGAGCAGAATGAATACAAAGGATAATCTAGCTGACCGCAACCAAATAGATTAGAACACAATTGCAAAAGACAAATAAACCACATTTCCCCCAACAAATACGAAATAACTCATTTTTTAACTTTTCTCATAATAATCTTGTTGTGGACTACCAAAATTGGGATAATGAGTAATCGAAGAGAATTGAAGAATTAACACAGCCGCCTGTTCACCCATTTAAACTAGAAATAGCTGGCGGATGAGTAGTATATGTATAATATATGTATACAGATTATGAAAAGTATACAGTAAATCCAACCGGTTATTTAGTATAACAGAAAAGACCATTATCGAAGTTCTAATTTGTTAGTTAAACAAATTTGGTTTCTTAAAACTTTGGAAAGTGGTCAAGTTCAAAAAAAACTTTGGAAAGTGGTATAATAATGTTACTAAAAGAACAATATATGTCATTCTTGGTATATCACAAACTAGGACATATGTTCAGCATGGAGGGAGTACCTTTTATTCATTGGAATAGTTGGTTTGCTTCTTTTTATAAGGTATCAATTCCTACTTCCAGCGAAATCTGTCCTTTCTGTTTTTGTTTTTCCTGGGTTTTAGTTGGGGTTGGGCAGAGAATTGAGCATTCTACTTCGCTAGATATTACTAACTGGCAACTTGATAGGTTACGATGCTTATGTTCCTGTATTTTGTTTAACGCTCAAGCTAAGCAAATCACTTCTGATTTCGACCATATCTATATTAGTGAGATATGCATATCAATCTCACAGTTACTATTCTCAAAATATAGAATGGCATAGCAATCTCAAATAATGTCCTCAAAACAAAAGTGTTTTTGTTTATCCAACTTTCTGGACATTTTCTGAGGTTGAGGATGTTGCAGGCAATTGAAAGGGAAAGAAGGTGAAACGATTGAATGAGGTTAAAACCTTTCAAGTTTTGTCAAAGTCAAACTCAAAATTTTCAAGTTTTTAACCTTAAAAATGAGTAGGGTAGGATGATGAAGCATACTGCATGACCTTGTTGGGTTTTCTTTTCTTTTGTCTCCATTCCGAATGCTCATCATATTCGGATCTTCAAGACATTCTTGACAAGAACGTTTAATGTCCTATGGATAATGACCTGTGAATGGATCTTTGAGCCACCATACACTGTTACATTCTGAATTGAAATGTTAATCCAGTGTTTCCACAAGGCCTTGTAATAACGGGAATCATAGAATGATAAACATTATAGTGGAGATTTCATTATGGCAGCAAAAGTCCTCCTACAAGGGGGTTGCTTGCCTAGCTCACAAAGGCATCCTTTGCCAACATTTACAAATTATTGGGCCTAGCGTTAACTCAGTTATTCACTATAGTAGAAACAATTACTAAAAGCATTTAACACCTTACACTCATATAACGATCAAATCATCCATATGTTAAAAGGAAAAACCGAGGGAGAATTAACCCTTCGGGGTGGCCCAGTGGTTTAGGCTTGGGATTTATATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCTTTGCCTCTGGGTCGAGCTCGTTGCATCAGGCTTGCCTAGTGCAGGTTACGTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTACCCTGTGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATTCAAAAAAAAAAAAAACCAAGGGAGAATTTATCTAGATGAAGACATTTTATTATACCATGATTTTTGTAAAGGTTATAAGATGTTTTTCAACTACTACATAGCCACTTTATACAAGAGATAGAAAATTAGTACTTCACTTATTGAATATATATAGTACAAGTGGAATTCAAATAACATGAATAGTAGTCTTATACACATAAAGGACATAAAAACTCAATGCTTGAAAATACAGTGAGGAATCTCTGATATTGTAGAGACTTAATCGGTAATGGGCAAGACATAGGAAAAATAGGGATTGTTATATGAACTGGAGAACAAATAATACGATAGAGTTATTAAGCATGTCAAACAAGACATGTGATAATTGGATGTTATGGCAAAAGGACCCTTTAATAATGATCTGCATGGCACGAGATAGTGGAATGTTATATCAAGAGAGGGGGTAATGGCTGGAATTGAACCCCCATCAACAGTGGTTTGCATGGCATGGGATGATGGAGTTTTTATGGCAAGACATGGCATAATTGGTTTTTATGGTAAGGGGCCCATAAATAATGTTTTGCATGCATGCGATAGTGAGATTTTATGGCAAGGGGCCCTTCTTCTAGGGCATGTTCTCATCTTCAGAATGCTAAATTCCGTTTTTTTTTTTATATTTTATGTCCATTTTTTGTTGTTGGTGAAGTAGATATTTTACTTTGATGCCTTTGCACTTTTTCAATGGTCTCCTATTGTTTTCTGTGTATCAGCAATAATCTTGTACACTAAATTGCCGAACTATTTAGAGTTATTGATGTTATAGCCCAAATGATTATGTAGCTGTTCATGCATTTATGGTGGAAGCATGTACATTATCTCCTCTTGCAGGTAGAGATTAGGCCAGTTGTAATTTGGCATGCTTTTTCTGCACTGAAACAGTGATTAGTTTGAACTTTGGATGTACTCAATCAAAGATGCCTATTGGCCAAATATTAAAATATGTGAAAGAAAAGAAAATGTCTATTTCTTGTCTCCATGGCGGGAGATTAGTTAAGCTAGCTGTGTTTAGCGAGTTCTCTTTTTTTTTTTTTTTACAGTACAACAACTATAACTTAGTCCCTAACAAGTTGGGGTCGGCTATATGAATTTCCACTTCTTCATTTAAGCTCATTTCTTTTATCCAGCTGACTTCTCTGCTTTTGCATGTCAAGGTTCTTGTTGTTCATATGTTGTTTAGGAGTTTGATTGTTTTGGCTGTTGGATTTGTACTGCAGGCACTTTTACCCTATCCAACCTTGGAATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCACCAGGAACTGTAAGTTCCACTCTGATATGCCTCCTGCCTGATATGTGAATACTTCTGGTATTGTTTCTCATGTTGGTTCAACTCTTGTCTAGGGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAGGTAGAGTGATGGTTCATGTTTGCTATTGATCTTTGGCATGCTAGTTCTTTTTCTCAAAATAAATGCTTAGGATTTTGCACAATTATCCAATTTGTTGATGCTTAAGCTATTAAATGTTAAAAATTTCAGGTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTACAAAATGACTTCTTTCCAGTCTAATGCTTCAATTTGCCATTTAATATGATGTTCCACCAGAAAAACA</genome_strand>
        <mrna_strand>ACAGCACTTGCATTGGTGCAACATCCTGTTGTGAACTCTAGTTGTAGAGATGGGAAGAGTTTCACATATAACAGTAGTATTAACATTGCTGTTGCGGTCGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAG..............................................................................GTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTTTACTCTATCCAACCTTGGAATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCACCAGGAACT...................................................................................GGTGCAATCATGGCTGTAGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAG.................................................................................................................................GTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGTCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACAATTCAGAAGATGAATGGAAATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTCTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATATTTAAGAGTGTTCTGCAAATGCAGTTGTATCTGCAGTTCACTATTGCCATTNCAAA........................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E695140" ref_strand="+" ref_description="SGN-E695140 [LH_Ea05M02](-)">
      <seq>gttgtagagatgggaagagtttcacatataacagtagtattaacattgctgttgcggtcgccatagatggtggcttgattactcctgtacttcaggatgctgacaaggttgatttatactcattgtcaaggaaatggaaggagttggttgataaggcccgggctaagcaacttcaaccccatgaatacaccacaggcacttttactctatccaaccttggaatgtttggcgttgaccgttttgatgccatcttaccaccaggaactggtgcaatcatggctgtaggagcatctcaacccacacttgttggaaccaaagatggtcgaattggcatgaaaaaccaaatgcaggtcaatgtcactgctgatcatcgggtaatatatggtgctgatttggcggctttcctgcaaaccttagcacagataattgaggatcctaaagaccttactctttagtctcttgtcctcaattgtgggagattagatgttttgtagtgtaatttgctcgagtttcagccaggagcttcatggagtgaacagaaaccatatgctataacatctgaagcatcatctaagtcacaattcagaagatgaatggaaatggatggttaggtcattttttcgcgtggttaatcttttctttttattggagtgtaaactcatgaggacatttttcatggctgccataaaattatggcctcaagatgagctctttgttgcttcatcattcaaatatggtagcaactttctattgattctatatttaagagtgttatgcgaatgcagttgtatctgcagttcactattgccattnaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="38598" stop="44786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38898" g_stop="39004" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39005" i_stop="39082" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39083" g_stop="39170" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="195" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39171" i_stop="43651" i_length="4481">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43652" g_stop="43722" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="266" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43723" i_stop="43805" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43806" g_stop="43889" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="350" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43890" i_stop="44018" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44019" g_stop="44486" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="818" r_length="468" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44487" i_stop="44541" i_length="55">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44542" g_stop="44550" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="827" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E695140" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38898" e_stop="39004"/>
          <exon e_start="39083" e_stop="39170"/>
          <exon e_start="43652" e_stop="43722"/>
          <exon e_start="43806" e_stop="43889"/>
          <exon e_start="44019" e_stop="44486"/>
          <exon e_start="44542" e_stop="44550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTAGAGATGGGAAGAGTTTCACATATAACAGTAGTATTAACATTGCTGTTGCAGTCGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAGGTTAGTTTGAAAATCATTTTTTAATATTCTGATTTCACATATAGTGAAGTGATTGATATGATTAAATATTCATTACAGGTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAGGTATGCTATTACGTTAGATGAGTTAACAGTCTGATGTGATAGAGGTGTATACCTATCACCAGCTGATCATATTTATTTTTTTTGAAAACGATAATTGTTTCTATTTCTGTAGAACAGTAAATAGGTTTTCCTGAAAACCCTATTTACATAAGGAACTCTGACAATACTGACCTATCCCTACAGTGAGTCTAAGACATCAAAAATAGAGACGATATCGTTAGAGTAAATCTGATTACACCAAAAACACAGTGTCAAAAACTCTTAAGGTTCCTCTCTTTCCATATTGTGCACCAAATAGGGGCAGGACAATTCTTTAGTTACTTCTGTTTTTTTCTTGTGTCCCTGATTCTTCCTAGCTATGTAGAGCCTCTGAAATTCTCCCAGGCATGGACCAGGAGATGTTTTTAAGTCTGAGGAACAAGTTCCACAACTGCCAGTGACTCCACATATTGTTAGCTGCAACTGCCTGTCTTTATATTGGATGGTTTCTTGAACTAGATTCTTTAACTTGGATATTAGCTTACATCATTATTTCTGAAGTCCATATGAACAAGGCTCACACTCACTCAGTAGACTGATACATGCCTAGAACTGATTAAGAGATAGGAGTTGGTCTGCTACTACAAGATATATATTTGGAGTCTGGAGATAGCACTTAATGTTTCTTCAAAACTCCTTTTCCATATGTGCATGCTCCTCATGTTGAATTTGAGAACTTGTAACTTATTATCAAAAGGCTGGTATTATAGTTTGATGTTTGAGCTAAGTGGCCTTCAAAACTCCAAATGACAAAATTGAGGTACTCCTGCTAATCCAGTTTCACGCATTACGGGTGCTTTAGCCACCTTATGAACTGAGACTACAACATAGAACAAATAGTTGGTTTTTTTTTTAAAATCAGTAGTTGAGTGTTGCTAGGACTTGTTTCTTGAAGTTATGGTCCAACTTCAGAAAACAAGAATTTGGTACTTATGACTGCTTATAATATTACTAGTACAATTTTTTTAGTGGATCAAGTCCAGACTGCTAATTAAGTGAGTTTTTATTCCAGTTCATTTTCATAAGGGCATGGCTTCACAGCTACAAATAAGTTATTCCCCTTCTTTATGGTTTAGCATCATAATGTTCTTTACTTCAACAGCTTAAATGACAGGTCTGATCTGAACTTTCACTAAATGTAAAGAACACAACTAGTACAACATTTGTAGCTTAGTGCTGATGCATGTGTAAATGTTATTATGAGCACTTGTTGGAGAGACTGATGAAGATAAAAAGAAACTTTATTCCATCTTGATTATGTGATTCTGTTTGATTCAATCCAAAATTTAAGATATTAGTCTGATAAAATTATTAATGAAATTACTTTACCTACAAAGTTGTGTAGTACCCTCTCTCCCTCTTAAAATGCTTGTTTGTTTCTTTTAGTTGTGATATATTGTCATTTGATAAATCAGATCTTTTAAACGCTTATATTTCACAAAGAGTTTTGGGATCCCTGCTTACTATTTGTATACACCTAATTGCTAATTTATTTTATTTTTAATAAAATGAATCGGAATGAAAGGAAGAGCAGAATGAATACAAAGGATAATCTAGCTGACCGCAACCAAATAGATTAGAACACAATTGCAAAAGACAAATAAACCACATTTCCCCCAACAAATACGAAATAACTCATTTTTTAACTTTTCTCATAATAATCTTGTTGTGGACTACCAAAATTGGGATAATGAGTAATCGAAGAGAATTGAAGAATTAACACAGCCGCCTGTTCACCCATTTAAACTAGAAATAGCTGGCGGATGAGTAGTATATGTATAATATATGTATACAGATTATGAAAAGTATACAGTAAATCCAACCGGTTATTTAGTATAACAGAAAAGACCATTATCGAAGTTCTAATTTGTTAGTTAAACAAATTTGGTTTCTTAAAACTTTGGAAAGTGGTCAAGTTCAAAAAAAACTTTGGAAAGTGGTATAATAATGTTACTAAAAGAACAATATATGTCATTCTTGGTATATCACAAACTAGGACATATGTTCAGCATGGAGGGAGTACCTTTTATTCATTGGAATAGTTGGTTTGCTTCTTTTTATAAGGTATCAATTCCTACTTCCAGCGAAATCTGTCCTTTCTGTTTTTGTTTTTCCTGGGTTTTAGTTGGGGTTGGGCAGAGAATTGAGCATTCTACTTCGCTAGATATTACTAACTGGCAACTTGATAGGTTACGATGCTTATGTTCCTGTATTTTGTTTAACGCTCAAGCTAAGCAAATCACTTCTGATTTCGACCATATCTATATTAGTGAGATATGCATATCAATCTCACAGTTACTATTCTCAAAATATAGAATGGCATAGCAATCTCAAATAATGTCCTCAAAACAAAAGTGTTTTTGTTTATCCAACTTTCTGGACATTTTCTGAGGTTGAGGATGTTGCAGGCAATTGAAAGGGAAAGAAGGTGAAACGATTGAATGAGGTTAAAACCTTTCAAGTTTTGTCAAAGTCAAACTCAAAATTTTCAAGTTTTTAACCTTAAAAATGAGTAGGGTAGGATGATGAAGCATACTGCATGACCTTGTTGGGTTTTCTTTTCTTTTGTCTCCATTCCGAATGCTCATCATATTCGGATCTTCAAGACATTCTTGACAAGAACGTTTAATGTCCTATGGATAATGACCTGTGAATGGATCTTTGAGCCACCATACACTGTTACATTCTGAATTGAAATGTTAATCCAGTGTTTCCACAAGGCCTTGTAATAACGGGAATCATAGAATGATAAACATTATAGTGGAGATTTCATTATGGCAGCAAAAGTCCTCCTACAAGGGGGTTGCTTGCCTAGCTCACAAAGGCATCCTTTGCCAACATTTACAAATTATTGGGCCTAGCGTTAACTCAGTTATTCACTATAGTAGAAACAATTACTAAAAGCATTTAACACCTTACACTCATATAACGATCAAATCATCCATATGTTAAAAGGAAAAACCGAGGGAGAATTAACCCTTCGGGGTGGCCCAGTGGTTTAGGCTTGGGATTTATATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCTTTGCCTCTGGGTCGAGCTCGTTGCATCAGGCTTGCCTAGTGCAGGTTACGTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTACCCTGTGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATTCAAAAAAAAAAAAAACCAAGGGAGAATTTATCTAGATGAAGACATTTTATTATACCATGATTTTTGTAAAGGTTATAAGATGTTTTTCAACTACTACATAGCCACTTTATACAAGAGATAGAAAATTAGTACTTCACTTATTGAATATATATAGTACAAGTGGAATTCAAATAACATGAATAGTAGTCTTATACACATAAAGGACATAAAAACTCAATGCTTGAAAATACAGTGAGGAATCTCTGATATTGTAGAGACTTAATCGGTAATGGGCAAGACATAGGAAAAATAGGGATTGTTATATGAACTGGAGAACAAATAATACGATAGAGTTATTAAGCATGTCAAACAAGACATGTGATAATTGGATGTTATGGCAAAAGGACCCTTTAATAATGATCTGCATGGCACGAGATAGTGGAATGTTATATCAAGAGAGGGGGTAATGGCTGGAATTGAACCCCCATCAACAGTGGTTTGCATGGCATGGGATGATGGAGTTTTTATGGCAAGACATGGCATAATTGGTTTTTATGGTAAGGGGCCCATAAATAATGTTTTGCATGCATGCGATAGTGAGATTTTATGGCAAGGGGCCCTTCTTCTAGGGCATGTTCTCATCTTCAGAATGCTAAATTCCGTTTTTTTTTTTATATTTTATGTCCATTTTTTGTTGTTGGTGAAGTAGATATTTTACTTTGATGCCTTTGCACTTTTTCAATGGTCTCCTATTGTTTTCTGTGTATCAGCAATAATCTTGTACACTAAATTGCCGAACTATTTAGAGTTATTGATGTTATAGCCCAAATGATTATGTAGCTGTTCATGCATTTATGGTGGAAGCATGTACATTATCTCCTCTTGCAGGTAGAGATTAGGCCAGTTGTAATTTGGCATGCTTTTTCTGCACTGAAACAGTGATTAGTTTGAACTTTGGATGTACTCAATCAAAGATGCCTATTGGCCAAATATTAAAATATGTGAAAGAAAAGAAAATGTCTATTTCTTGTCTCCATGGCGGGAGATTAGTTAAGCTAGCTGTGTTTAGCGAGTTCTCTTTTTTTTTTTTTTTACAGTACAACAACTATAACTTAGTCCCTAACAAGTTGGGGTCGGCTATATGAATTTCCACTTCTTCATTTAAGCTCATTTCTTTTATCCAGCTGACTTCTCTGCTTTTGCATGTCAAGGTTCTTGTTGTTCATATGTTGTTTAGGAGTTTGATTGTTTTGGCTGTTGGATTTGTACTGCAGGCACTTTTACCCTATCCAACCTTGGAATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCACCAGGAACTGTAAGTTCCACTCTGATATGCCTCCTGCCTGATATGTGAATACTTCTGGTATTGTTTCTCATGTTGGTTCAACTCTTGTCTAGGGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAGGTAGAGTGATGGTTCATGTTTGCTATTGATCTTTGGCATGCTAGTTCTTTTTCTCAAAATAAATGCTTAGGATTTTGCACAATTATCCAATTTGTTGATGCTTAAGCTATTAAATGTTAAAAATTTCAGGTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTACAAAATGACTTCTTTCCAGTCTAATGCTTCAATTTGCCATTTAATATGATGTTCCACCAGAAAAACACC</genome_strand>
        <mrna_strand>GTTGTAGAGATGGGAAGAGTTTCACATATAACAGTAGTATTAACATTGCTGTTGCGGTCGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAG..............................................................................GTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTTTACTCTATCCAACCTTGGAATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCACCAGGAACT...................................................................................GGTGCAATCATGGCTGTAGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAG.................................................................................................................................GTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGTCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACAATTCAGAAGATGAATGGAAATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTCTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATGGTAGCAACTTTCTATTGATTCTATATTTAAGAGTGTTATGCGAATGCAGTTGTATCTGCAGTTCACTATTGCCATTNAAAAA.......................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373770" ref_strand="+" ref_description="SGN-E373770 [TUS-31-G20](-)">
      <seq>ctcttgtctagggtgcaattatggctgttggagcatctcaacccacacttgttggaaccaaagatggtcgaattggcatgaaaaaccaaatgcaggtcaatgtcactgctgatcatcgggtaatatatggtgctgatttggcggctttcctgcaaaccttagcacagataattgaggatcctaaagaccttactctttaggctcttgtcctcaattgtgggagattagatgttttgtagtgtaatttgctcgagtttcagccaggagcttcatggagtgaacagaaaccatatgctataacatctgaagcatcatttaagtcacacttcagaagatgaatgtttatggatggttaggtcattttttcgcgtggttaatcttttttttttattggagtgtaaactcatgaggacatttttcatggctgccataaaattatggcctcaagatgagctctttgttgcttcatcattcaaatattgttgcaactttctattgattctatttttaagggtgttctgcaatttcagttgtatctgcagttcactattgccattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="43495" stop="44786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43795" g_stop="43889" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43890" i_stop="44018" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44019" g_stop="44491" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="568" r_length="473" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E373770" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43795" e_stop="43889"/>
          <exon e_start="44019" e_stop="44491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGTCTAGGGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAGGTAGAGTGATGGTTCATGTTTGCTATTGATCTTTGGCATGCTAGTTCTTTTTCTCAAAATAAATGCTTAGGATTTTGCACAATTATCCAATTTGTTGATGCTTAAGCTATTAAATGTTAAAAATTTCAGGTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTACAAAATGACT</genome_strand>
        <mrna_strand>CTCTTGTCTAGGGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAG.................................................................................................................................GTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATTTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290626" ref_strand="+" ref_description="SGN-E290626 [cLES-20-J12]">
      <seq>tcttgtctagggtgcaattatggctgttggagcatctcaacccacacttgttggaaccaaagatggtcgaattggcatgaaaaaccaaatgcaggtcaatgtcactgctgatcatcgggtaatatatggtgctgatttggcggctttcctgcaaaccttagcacagataattgaggatcctaaagaccttactctttaggctcttgtcctcaattgtgggagattagatgttttgtagtgtaatttgctcgagtttcagccaggagcttcatggagtgaacagaaaccatatgctataacatctgaagcatcatctaagtcacacttcagaagatgaatgtttatggatggttaggtcattttttcgcgtggttaatcttttttttttattggagtgtaaactcatgaggacatttttcatggctgccataaaattatggcctcaagatgagctctttgttgcttcatcattcaaatattgttgcaactttctattgattctatttttaagggtgttctgcaatttcagttgtatctgcagttcactattgccattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="43496" stop="44786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43796" g_stop="43889" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43890" i_stop="44018" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44019" g_stop="44485" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="561" r_length="467" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44486" i_stop="44541" i_length="56">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44542" g_stop="44548" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="568" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E290626" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43796" e_stop="43889"/>
          <exon e_start="44019" e_stop="44485"/>
          <exon e_start="44542" e_stop="44548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTCTAGGGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAGGTAGAGTGATGGTTCATGTTTGCTATTGATCTTTGGCATGCTAGTTCTTTTTCTCAAAATAAATGCTTAGGATTTTGCACAATTATCCAATTTGTTGATGCTTAAGCTATTAAATGTTAAAAATTTCAGGTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTACAAAATGACTTCTTTCCAGTCTAATGCTTCAATTTGCCATTTAATATGATGTTCCACCAGAAAAACA</genome_strand>
        <mrna_strand>TCTTGTCTAGGGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAG.................................................................................................................................GTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTAAAAA........................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373771" ref_strand="+" ref_description="SGN-E373771 [TUS-31-G20]">
      <seq>tcttgtctagggtgcaattatggctgttggagcatctcaacccacacttgttggaaccaaagatggtcgaattggcatgaaaaaccaaatgcaggtcaatgtcactgctgatcatcgggtaatatatggtgctgatttggcggctttcctgcaaaccttagcacagataattgaggatcctaaagaccttactctttaggctcttgtcctcaattgtgggagattagatgttttgtagtgtaatttgctcgagtttcagccaggagcttcatggagtgaacagaaaccatatgctataacatctgaagcatcatctaagtcacacttcagaagatgaatgtttatggatggttaggtcattttttcgcgtggttaatcttttttttttattggagtgtaaactcatgaggacatttttcatggctgccataaaattatggcctcaagatgagctctttgttgcttcatcattcaaatattgttgcaactttctattgattctatttttaagggtgttctgcaatttcagttgtatctgcagttcactattgccattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="43496" stop="44786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43796" g_stop="43889" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43890" i_stop="44018" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44019" g_stop="44485" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="561" r_length="467" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44486" i_stop="44541" i_length="56">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44542" g_stop="44548" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="568" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E373771" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43796" e_stop="43889"/>
          <exon e_start="44019" e_stop="44485"/>
          <exon e_start="44542" e_stop="44548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTCTAGGGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAGGTAGAGTGATGGTTCATGTTTGCTATTGATCTTTGGCATGCTAGTTCTTTTTCTCAAAATAAATGCTTAGGATTTTGCACAATTATCCAATTTGTTGATGCTTAAGCTATTAAATGTTAAAAATTTCAGGTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTACAAAATGACTTCTTTCCAGTCTAATGCTTCAATTTGCCATTTAATATGATGTTCCACCAGAAAAACA</genome_strand>
        <mrna_strand>TCTTGTCTAGGGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAG.................................................................................................................................GTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTAAAAA........................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265080" ref_strand="+" ref_description="SGN-E265080 [cLEI-2-D2]">
      <seq>tttttttttttgaatgatgaagcaacaaagagctcatcttgaggccataattttatggcagccatgaaaaatgtcctcatgagtttacactccaataaaaaaaaaagattaaccacgcgaaaaaatgacctaaccatccataaacattcatcttctgaagtgtgacttagatgatgcttcagatgttatagcatatggtttctgttcactccatgaagctcctggctgaaactcgagcaaattacactacaaaacatctaatctcccacaattgaggacaagagcctaaagagtaaggtctttaggatcctcaattatctgtgctaaggtttgcaggaaagccgccaaatcagcaccatatattacccgatgatcagcagtgacattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="44702" stop="43720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44408" g_stop="44020" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E265080" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44408" e_stop="44020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATTTGAATGATGAAGCAACAAAGAGCTCATCTTGAGGCCATAATTTTATGGCAGCCATGAAAAATGTCCTCATGAGTTTACACTCCAATAAAAAAAAAAGATTAACCACGCGAAAAAATGACCTAACCATCCATAAACATTCATCTTCTGAAGTGTGACTTAGATGATGCTTCAGATGTTATAGCATATGGTTTCTGTTCACTCCATGAAGCTCCTGGCTGAAACTCGAGCAAATTACACTACAAAACATCTAATCTCCCACAATTGAGGACAAGAGCCTAAAGAGTAAGGTCTTTAGGATCCTCAATTATCTGTGCTAAGGTTTGCAGGAAAGCCGCCAAATCAGCACCATATATTACCCGATGATCAGCAGTGACATTGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTGAATGATGAAGCAACAAAGAGCTCATCTTGAGGCCATAATTTTATGGCAGCCATGAAAAATGTCCTCATGAGTTTACACTCCAATAAAAAAAAAAGATTAACCACGCGAAAAAATGACCTAACCATCCATAAACATTCATCTTCTGAAGTGTGACTTAGATGATGCTTCAGATGTTATAGCATATGGTTTCTGTTCACTCCATGAAGCTCCTGGCTGAAACTCGAGCAAATTACACTACAAAACATCTAATCTCCCACAATTGAGGACAAGAGCCTAAAGAGTAAGGTCTTTAGGATCCTCAATTATCTGTGCTAAGGTTTGCAGGAAAGCCGCCAAATCAGCACCATATATTACCCGATGATCAGCAGTGACATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716770" ref_strand="+" ref_description="SGN-E716770 [FB17DH10]">
      <seq>gtcactgctgatcatcgggtaatatatggtgctgatttggcggctttcctgcaaaccttagcacagataattgaggatcctaaagaccttactctttaggctcttgtcctcaattgtgggagattagatgttttgtagtgtaatttgctcgagtttcagccaggagcttcatggagtgaacagaaaccatatgctataacatctgaagcatcatctaagtcgcacttcagaagatgaatgtttatggatggttaggtcattttttcgcgtggttaatcttttctttttattggagtgtaaactcatgaggacatttttcatggctgccataaaattatggcctcaagatgagctctttgttgcttcatcattcaaatattgttgcaactttctattgattctatatttaagggtgttctgcaatttcagttgtatctgcagttcactattgccattacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="43725" stop="44786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44025" g_stop="44486" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44487" i_stop="44541" i_length="55">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44542" g_stop="44549" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="470" r_length="8" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E716770" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44025" e_stop="44486"/>
          <exon e_start="44542" e_stop="44549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTACAAAATGACTTCTTTCCAGTCTAATGCTTCAATTTGCCATTTAATATGATGTTCCACCAGAAAAACAC</genome_strand>
        <mrna_strand>GTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCGCACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTCTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATATTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTACAAAA.......................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577795" ref_strand="+" ref_description="SGN-E577795 [LE15DE10]">
      <seq>tggcaatagtgaactgcagatacaactgaaattgcagaacacccttaaatatagaatcaatagaaagttgcaacaatatttgaatgatgaagcaacaaagagctcatcttgaggccataattttatggcagccatgaaaaatgtcctcatgagtttacactccaataaaaagaaaagattaaccacgcgaaaaaatgacctaaccatccataaacattcatcttctgaagtgcgacttagatgatgcttcagatgttatagcatatggtttctgttcactccatgaagctcctggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="44778" stop="43881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44478" g_stop="44181" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E577795" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44478" e_stop="44181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAATAGTGAACTGCAGATACAACTGAAATTGCAGAACACCCTTAAAAATAGAATCAATAGAAAGTTGCAACAATATTTGAATGATGAAGCAACAAAGAGCTCATCTTGAGGCCATAATTTTATGGCAGCCATGAAAAATGTCCTCATGAGTTTACACTCCAATAAAAAAAAAAGATTAACCACGCGAAAAAATGACCTAACCATCCATAAACATTCATCTTCTGAAGTGTGACTTAGATGATGCTTCAGATGTTATAGCATATGGTTTCTGTTCACTCCATGAAGCTCCTGGCTG</genome_strand>
        <mrna_strand>TGGCAATAGTGAACTGCAGATACAACTGAAATTGCAGAACACCCTTAAATATAGAATCAATAGAAAGTTGCAACAATATTTGAATGATGAAGCAACAAAGAGCTCATCTTGAGGCCATAATTTTATGGCAGCCATGAAAAATGTCCTCATGAGTTTACACTCCAATAAAAAGAAAAGATTAACCACGCGAAAAAATGACCTAACCATCCATAAACATTCATCTTCTGAAGTGCGACTTAGATGATGCTTCAGATGTTATAGCATATGGTTTCTGTTCACTCCATGAAGCTCCTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="59187" stop="60444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59487" g_stop="60144" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59487" e_stop="60144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGTTTTTAACTCTCTTAACTCCGCAGGAGCCATTCTATAAGGGGGTATAGAAAT-GGGCGAGTACCTGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATTTGCAGGGAACACATCCCGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAATGTAATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTAAAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTACCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="59256" stop="60611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59556" g_stop="60316" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59556" e_stop="60316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGTTTTTAACTCTCTTAACTCCGCAGGAGCCATTCTATAAGGGGGTATAGAAAT-GGGCGAGTACCTGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATTTGCAGGGAACACATCCCGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAATGTAATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTAAAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTACCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCAGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCACTAGCAAATGAGGACGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATAAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206529" ref_strand="+" ref_description="SGN-E206529 [cLEC-23-F20]">
      <seq>tttgaggcctggtggtgaatttcagggattacccattccggagtggaagtgggaccgcattactatggattttgtggctggtctaccgaggacttctagaggatttgatagtatttgggtcatcgttgatcgattgaccaagtcagcacatttccttttcgttcaatcttcatttagtgccgagaggttggctcgtatctacattcgggaggtggttcgacttcatggggtgccagtttctattatatcagatcggggttctcagttcacgtctagcttttggaggacctttcaggatgagttgggcacccaggttgacctgagcacagctttccacccgcagactgatggtcagtcagagcgcactattcaggtccttgaggacatgctacgggcttgtgttttggagtttggtggtcaatgggaccagttcttgcctttggcggaatttgcatataacaacagctacaattctagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="67583" stop="68661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67883" g_stop="68361" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E206529" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67883" e_stop="68361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGCCTGGTGGTGAATTTCAGGGATTACCCATTCCCGAGTGGAAGTGGGATCGCATTACTATGGATTTTGTGGCTGGTCTACCGAGGACTTCTAGAGGATTTGATAGTATTTGGGTCATCGTTGATCGATTGACCAAGTCAGCACATTTCCTTCCCGTTCAATCTTCATTTAGTGCCGAGAGGTTGGCTCGTATCTACATTTGAGAGGTGGTTCGACTTCATGGGGTGCCAGTTTCTATTATATCAGATCGGGGTTCTTAGTTCACGTCTAGCTTTTGGAGGACCTTTCAGGATGAGTTGGGCACCCGGGTTGACCTGAGCACAGCTTTCCACCCGCAGACTGATGGTCAGTCAGAGTGCACTATTCAGGTCCTTGAGGACATGCTACGGGCTTGTGTTTTGGAGTTTGGTGGTCAATGGGACCAGTTCTTGCCTTTGGCAGAATTTGCATATAACAACAGCTACCATTCTAGCA</genome_strand>
        <mrna_strand>TTTGAGGCCTGGTGGTGAATTTCAGGGATTACCCATTCCGGAGTGGAAGTGGGACCGCATTACTATGGATTTTGTGGCTGGTCTACCGAGGACTTCTAGAGGATTTGATAGTATTTGGGTCATCGTTGATCGATTGACCAAGTCAGCACATTTCCTTTTCGTTCAATCTTCATTTAGTGCCGAGAGGTTGGCTCGTATCTACATTCGGGAGGTGGTTCGACTTCATGGGGTGCCAGTTTCTATTATATCAGATCGGGGTTCTCAGTTCACGTCTAGCTTTTGGAGGACCTTTCAGGATGAGTTGGGCACCCAGGTTGACCTGAGCACAGCTTTCCACCCGCAGACTGATGGTCAGTCAGAGCGCACTATTCAGGTCCTTGAGGACATGCTACGGGCTTGTGTTTTGGAGTTTGGTGGTCAATGGGACCAGTTCTTGCCTTTGGCGGAATTTGCATATAACAACAGCTACAATTCTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="76956" stop="78118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77163" g_stop="77818" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77163" e_stop="77818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAATCAGGTTCTTACTTATCTTAGTGGGCTATCTGATTAGGGCCATACACCTCCAGTGTTTTCTGCACCAGCTCCTCAGGTTCAAAGAGTAAAACATGCAGCTGCTGTGGCTCTCCGCATGGATGCATCATTGGAAGTAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACAGGTGATCAACATGAACTTTTCATTAAGTTCTTAAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAAGATGCCTATGATTTTATGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATTCGGTGTTGAGTTTGTGACCTATCAGTTTCAGGGGGATGCCATAATATGGAAGCGGTCATATGTTGAGTGTCAACCAGCACAGGCACCACCCATGACTTGGGCATCATTTTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTAGAGCAAGGAAGGATGTCTGTTGCTGCTTATGAGACCAAATTTCGTGCACTATCCAGGTATGCCACTCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGCTTTGTGAAAGGATTGAGATCAGATTTTCAGATCCCAGCCTTACACGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349296" ref_strand="+" ref_description="SGN-E349296 [cTOS-2-P10]">
      <seq>gaaaaactggcagaaatgacggaccccacgacggaccatcatgggcacgacggaccgtcgcagggtctcatttcaaaacacttaggaaatctgaaattgggtactgaaaatcgactctctgaacttcgtaacggaatggcaagacggaccgtcacaggcgtgatggaccatcacagagtcttcagtgaaaatccagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacaacgggctgtcacaggctgcgtaaatcccagtctgagtcggaattcctcaattgttttaagggacgtttttgactattcctgctttaattataaagttagtgggttaatgttaataagtctaattacttgggggttaaaagaggtaaccttaagttaattagtgggttattattgccatattttattcttaattatatactaattagggtaaaagaaagagggtttgaataaagaaaatagaaagaacaagagaaagagagagaaagtcgaacgagaaagaggatcgaacgagaggaaaaaacacaaagcttgggaaatcacttgcttgatcacgaatcttcggtggaggtaggttatggtttctcttacgatattcgtagtaagctcttaatagcgaataatatgtattgataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="94102" stop="85780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93819" g_stop="93663" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93662" i_stop="86578" i_length="7085">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86577" g_stop="86080" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="660" r_length="503" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E349296" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93819" e_stop="93663"/>
          <exon e_start="86577" e_stop="86080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAGGCTGAGGCGACGGATCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAGAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGATTATTCAGTGGAAATTGAGTCTCTGACCCTTGCGACGACCTGCAGGACGGACCCTCGCAGGCACGACGGGCCGTCGCAGGTTGCGCAATCCCAGTCTGGGTCAGATTTCTTGATACGTTTTAAGGGACGTTTTTGACTATTCTTGCCTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTTGAACGAGAGAGAGGATCGAACGAGAGGAAAAACACAAAGCTTGGGAAATTTCTGGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATTGTAAACCTTCTATATGCTTAATTGTATGCTTGCATGAATGCTGTGATTATGTAATTGTGAATAAATAAGCATGATGAAGCTATTGAATCCCAAATCTTGAAAAGAAACCCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGCGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGACCGAGGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTAATTGTAGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGTTTCTTATGTATATTTAGCTTCTTAGAATACTCTTAGTTTAGTAATTTGATTATAGATGTTCTTGTGATGATGACTTCCAAATTTTGGGAATAATAATAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTATCTTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTTGCGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGGCTCGAGGAAGAACAGCGGCAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGAAAGAGGACGAGCGTCTAGCCCATCTGATACTAGGACAGTGACTCCACCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCGCCAACACCTCCGGTTTCAGAAGTACAACATGCAGCCACTATGGCTCCTCGTATGGAGGCCTCATTGGACCTAGGCACATTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGATTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAAGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGCAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTTTCCAAAACAGAGTTATAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATAGGGCCCATTGTTATGTTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTATTTGATCCCGGATCCACATTTTCTTATGTGTCTTCCGCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTAACTTTTGTGGGGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCTGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGAGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTATTCGTGCTAAGAAAATGGTTAGAAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCGAACCGGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGAGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATAAACGAGATTTTTAAGCCATATTTGGACCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTAAGGATGGAGTGATGGTGGATCCTTCTAAGATTGAGACAGTGAAGAATTGGGTAAGACCTACTAATGTGTCAGAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCGTTGATTTGTCAAGGGATTCTCTTCTATTGCTTTCCAATTGACGAACTTGACTAAGCAGAATGTTCCATTTGTATGGTCGGACGAATGTGAGGAAAGCTTTCAGAAGCTCAAGACTTTGTTGACTACCGCACCTATCCTTACCTTGCCAGTAGAGGGTAAGAACTTCATTGTTTTTTGTGATGCATCCTATTCTGGTTTGGGCGCAGTACTAATGCAAGAGAAGAGTGTGATTGCTTATGCTTCAAGGCAATTAAAGGTGCATGAACGTAACTATCCAACTCATGATTTGGAATTGGCTGCGGTAGTGTTTGCATTAAAACAATGGAGACACTATTTATATGGGGTTAAGTGTGAGGTCTACACGGATCATCGTAGCCTTCAGTATGTCTTTACTCAGAAGGATTTGAGCTTGAGACAGAGGATATGGATGGAACTACTGAAGGACTACGACATCACTATTTTGTATCATCCGGGGAAGGCGAATGTTGTAGCAGATGCTTTAAGTAGAAAGGTGGGAAGCATGGGAAGTCTAGCTCACTTGCAAGCTTCTAGACGCCCATTGGCTAGAGAGGTTCAGACTCTAGCTAATGACTTGATGAGATTAGAAGTAAATGAGAAGGGAGGATTGTTGGCTAGTGTGGAGTCAAGATCTTCTTTTCTTGACAAAATTAAGGGAAAACAGTTTGATAATGAGAAACTAAGGCGAATCCAAGATAAAGTATTATGAGGGGAGGCTAAGGAAGCACAAATCGATGAGGAAGGTGTTTTGAGAATCAAAGGAAGGGTATGTGTACCCCGCGTCGATGATTTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAGGTATTCTATACATCCGGGTGCAACCAAGATGTATCGTGACCTAAAGCAACACTTTTGGTGGAGTAGAATGAAGCGTGATGTTGTTGAGTTTATTGCGAAGTGTCCAAACTGTCAACAAGTAAAGTATGAACACCAAAGGCCCGGAGGAACACTTCAGAGAATGCCCATTCCGGAATGGAAATGGGAGAGGATCGCAATGGACTTCGTGGTTGGTCTTCCAAAAACGATGGGTAAGTATGACTCCATTTGGGTGATTGTTGATAGGTTAACTAAGTCTGCTCATTTTATTCCGGTTAAGGTGACTTACAATGCAGAGAAGTTAGCCAAACTTTACATCTCGGAAGTGGTGCGATTGCATGGGGTTCCACTATCCACCATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTTTGGAAAACATTGCATGCGGAATTGGGTACTAGGTTGGACCTTAGTACTGCGTTCCATCCTCAGACCGATGGTCAGTCTGAGAGAACGATTCAAGTGTTGGAAGATATGCTTCGTGCATGTGTGATAGAGTTTGGTGGCCATTGGGATAGCTTCTTACCCTTAGCGGAGTTTTCATACAATAATAGCTATCACTCAAGCATTGATATGGCTCCATTTGAAGCATTGTATGGTAGGAGATGTAGGTCTCCCATTGGTTGGTTTGATGCATTTGAGGTTAGGCCTAGGGGTACTGACCTTTTGAGGGATTCGATAGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCACAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCACCAATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAGCTAAGTCCAAGGTACATTGGTCCCTTTGAAGTACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTACATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGACGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGAAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGCGGGAAAAATACCCACATCTGTTTACAGATTCAAGTACTCCTTTTCGCTCTTGTTTTCCTTCTTGTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTTAAAAAAAAACAGGCTGAGGCGACGGACCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTTGTTTCAGAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGATTATTCAGTGGAAATTGAGTCTCTGACCCTTGTGACGACCTGCAGGACGGACCCTCGCAGGCACGACGGACCGTCGCAGGTTGCG-CAATCCCAGTCTGGGTCGGATTTCTTGATACGTTTTAAGGGACGTTTTTGACTATTCTTGCCTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTTGAACGAGAGAGAGGATCGAACGAGAGG-AAAAACACAAAGCTTGGGAAATTGCTGGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATT</genome_strand>
        <mrna_strand>GAAAAACTGGCAGAAATGACGGACCCCACGACGGACCATCATGGGCACGACGGACCGTCGCAGGGTCTCATTTCAAAACACTTAGGAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAAGACGGACCGTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGATGGACCATCACAGAGTCTTCAGTGAAAATCCAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACAACGGGCTGTCACAGGCTGCGTAAATCCCAGTCTGAGTCGGAATTCCTCAATTGTTTTAAGGGACGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATATTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAACACAAAGCTTGGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAGCTCTTAATAGCGAATAATATGTATTGATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="85928" stop="94081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86220" g_stop="86578" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86579" i_stop="93663" i_length="7085">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93664" g_stop="93781" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="472" r_length="118" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86220" e_stop="86578"/>
          <exon e_start="93664" e_stop="93781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTCAACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTAAAACGTATCAAGAAATCCGACCCAGACTGGGATTGCGCAACCTGCGACGGTCCGTCGTGCCTGCGAGGGTCCGTCCTGCAGGTCGTCACAAGGGTCAGAGACTCAATTTCCACTGAATAATCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTCTGAAACAAGACCCTGCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTCGCCTCAGCCTGTTTTTTTTTAAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACAATAGATACCAATTTACCCATCGTTCGTCCCCGAACGATCACAAGAAGGAAAACAAGAGCGAAAAGGAGTACTTGAATCTGTAAACAGATGTGGGTATTTTTCCCGCATATCTGCCTCCTTCTCCCAAGTGGCTTCTTCAACGGGTCGATTCTTTCATTGCACCTTGATGGATGCAATCTCTCTTGACCTCAACTTGCGAACTTCTCTATCTAAAATAGCAACAGGCTCCTCCTCATAAGACAAGTTCTCATCAAGCAAAACTGAATCCCAACGGATAATGTAGTTTCCGTCCCCATGGTATCTTTTCAACATCGACACATGGAATACCGGATGTACTCCGGACAGCCCTGGAGGCAAGGCTAACTCATAAGCCACCTCTCCTACTCGCTTAAGTACTTCAAAGGGACCAATGTACCTTGGACTTAGCTTACCCCTTTTACCAAACCGCATCACCCCTTTCATTGGTGAAACTTTCAACAAGACTTGTTCACCCTCCATGAACTCTAAGTCTCTAACCTTTCGATCTGCATATTCTTTTTGTCTACTTTGTGCCGCTAGAAGCTTTTCTTGAATAGACTTCACTTTCTCTATCGAATCCCTCAAAAGGTCAGTACCCCTAGGCCTAACCTCAAATGCATCAAACCAACCAATGGGAGACCTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCGGTCTGAGGATGGAACGCAGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGGTGGATAGTGGAACCCCATGCAATCGCACCACTTCCGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCATCGTTTTTGGAAGACCAACCACGAAGTCCATTGCGATCCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTCGCAATAAACTCAACAACATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGATACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGTACACATACCCTTCCTTTGATTCTCAAAACACCTTCCTCATCGATTTGTGCTTCCTTAGCCTCCCCTCATAATACTTTATCTTGGATTCGCCTTAGTTTCTCATTATCAAACTGTTTTCCCTTAATTTTGTCAAGAAAAGAAGATCTTGACTCCACACTAGCCAACAATCCTCCCTTCTCATTTACTTCTAATCTCATCAAGTCATTAGCTAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCACCTTTCTACTTAAAGCATCTGCTACAACATTCGCCTTCCCCGGATGATACAAAATAGTGATGTCGTAGTCCTTCAGTAGTTCCATCCATATCCTCTGTCTCAAGCTCAAATCCTTCTGAGTAAAGACATACTGAAGGCTACGATGATCCGTGTAGACCTCACACTTAACCCCATATAAATAGTGTCTCCATTGTTTTAATGCAAACACTACCGCAGCCAATTCCAAATCATGAGTTGGATAGTTACGTTCATGCACCTTTAATTGCCTTGAAGCATAAGCAATCACACTCTTCTCTTGCATTAGTACTGCGCCCAAACCAGAATAGGATGCATCACAAAAAACAATGAAGTTCTTACCCTCTACTGGCAAGGTAAGGATAGGTGCGGTAGTCAACAAAGTCTTGAGCTTCTGAAAGCTTTCCTCACATTCGTCCGACCATACAAATGGAACATTCTGCTTAGTCAAGTTCGTCAATTGGAAAGCAATAGAAGAGAATCCCTTGACAAATCAACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTTATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCCGGTTCGAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTTCTAACCATTTTCTTAGCACGAATAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCTCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGACACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAACATAACAATGGGCCCTATCGTTCGTCTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTATAACTCTGTTTTGGAAAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTGCAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCTTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAATCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTAGGTCCAATGAGGCCTCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGTGGAGTCACTGTCCTAGTATCAGATGGGCTAGACGCTCGTCCTCTTTCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTCCTCGAGCCACAGCCCCAGTGGCTGGCTCAGTTGTTTCTTGTCTGGCCGGTGTTGGTGTTGGCGTAGTCGTTGCTCTAGTTCTAACCATCTGCGAAAGAGAGTGAAGATGGTCAGATACCAATTCGTATCGCCTAGATACCAATTGGACTCAAGTAGTAGCACGAAAGAAAGAATGAAAGAGTGAAATTTTCCTAAAAGTCTTATAGCCTCTCAAGGAAAAGTAAAGGTGTCCCCCTACCGTTCCTTAAGACTCTACTAGACCTGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCCGGGCCGCAACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAAGATAATATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATAAAATCAATAACTATTATTATTCCCAAAATTTGGAAGTCATCATCACAAGAACATCTATAATCAAATTACTAAACTAAGAGTATTCTAAGAAGCTAAATATACATAAGAAACTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAGTTACTGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCTACAATTAAACAAGAAGAAAACAATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCCTCGGTCAACTCAAAATAGAAAACAGTATGTATTAAGCAATATCATAAAATCAACTAATATCCTTAGCATGCAGCATTTACAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTCATTTGGGAATTTAGTTCATTAGATTGGATATATTAACATATTTCAAGATTCATTATCTTTATTCCCCTCGTGTCGGTACGTGACACTCCGCTCCTCAATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACGCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACCACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATTATTAACAAAGTAGATTAGGGTTTCTTTTCAAGATTTGGGATTCAATAGCTTCATCATGCTTATTTATTCACAATTACATAATCACAGCATTCATGCAAGCATACAATTAAGCATATAGAAGGTTTACAATACTACTAACACATATCATTCGCTATTAAGAGTTTACTACGAATAGCATGAAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCCAGAAATTTCCCAAGCTTTGTGTTTTTCCTCTCGTTCGATCCTCTCTCTCGTTCAACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTAAAACGTATCAAGAAATCTGACCCAGACTGGGATTGCGCAACCTGCGACGGCCCGTCGTGCCTGCGAGGGTCCGTCCTGCAGGTCGTCGCAAGGGTCAGAGACTCAATTTCCACTGAATAATCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTCTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTT-T-TCT-TTTTC-TTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="87122" stop="87899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87422" g_stop="87598" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87422" e_stop="87598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="88603" stop="89915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88903" g_stop="89615" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88903" e_stop="89615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCAACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTTATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="88603" stop="89798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88903" g_stop="89498" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88903" e_stop="89498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCAACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTTATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="88603" stop="89728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88903" g_stop="89428" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88903" e_stop="89428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCAACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTTATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="88674" stop="89953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88974" g_stop="89653" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88974" e_stop="89653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTTATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTG</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="88674" stop="89632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88974" g_stop="89332" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88974" e_stop="89332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTTATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="91220" stop="3003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90920" g_stop="90748" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90747" i_stop="90004" i_length="744">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90003" g_stop="89475" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90920" e_stop="90748"/>
          <exon e_start="90003" e_stop="89475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAAGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGCAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTTTCCAAAACAGAGTTATAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATAGGGCCCATTGTTATGTTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTATTTGATCCCGGATCCACATTTTCTTATGTGTCTTCCGCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTAACTTTTGTGGGGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCTGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGAGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTATTCGTGCTAAGAAAATGGTTAGAAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCGAACCGGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGAGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACC-GGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAGATCG--G-CAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="89192" stop="90453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89492" g_stop="90153" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89492" e_stop="90153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCCGGTTCGAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTTCTAACCATTTTCTTAGCACGAATAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCTCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTG-CCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="89596" stop="90526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89896" g_stop="90226" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89896" e_stop="90226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCTCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGACACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="89803" stop="90961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90103" g_stop="90661" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90103" e_stop="90661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGACACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAACATAACAATGGGCCCTATCGTTCGTCTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTATAACTCTGTTTTGGAAAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTGCAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="89887" stop="91276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90187" g_stop="90976" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90187" e_stop="90976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAACATAACAATGGGCCCTATCGTTCGTCTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTATAACTCTGTTTTGGAAAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTGCAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCTTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="89963" stop="91260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90263" g_stop="90960" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90263" e_stop="90960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAACATAACAATGGGCCCTATCGTTCGTCTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTATAACTCTGTTTTGGAAAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTGCAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCTTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="90524" stop="91843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90824" g_stop="91543" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90824" e_stop="91543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATTCGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAATCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTAGGTCCAATGAGGCCTCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGTGGAGTCACTGTCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="90527" stop="91790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90827" g_stop="91490" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90827" e_stop="91490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAATCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTAGGTCCAATGAGGCCTCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="60944" stop="91915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91182" g_stop="91614" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91182" e_stop="91614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTAGGTCCAATGAGGCCTCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGTGGAGTCACTGTCCTAGTATCAGATGGGCTAGACGCTCGTCCTCTTTCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="92207" stop="91321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91907" g_stop="91621" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91907" e_stop="91621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGAC-TTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="92853" stop="92018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92553" g_stop="92317" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92553" e_stop="92317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGACCGAGGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTAATTGTA</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTG-TTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="93375" stop="92109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93075" g_stop="92805" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92804" i_stop="92653" i_length="152">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92652" g_stop="92409" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="515" r_length="244" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93075" e_stop="92805"/>
          <exon e_start="92652" e_stop="92409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGCGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCAC........................................................................................................................................................GTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E610986" ref_strand="-" ref_description="SGN-E610986 [60730]">
      <seq>agcagtcctcaaattggctctagcttgtgtcagtgtatcaccagaaggccggccaaagatgaagagtgtgcttcgagtgcttctccatgcaaggtgatacgtcaaaggaaagttaaggagaaaacagccaagatggttttcttctttttcttttggggaggagctgcaagtggtgaaggtgttgtgagctatgcagaatatgccagttttgccagtttatacatattatattaatgtaaacatatagatatatgatgatagtagctacataactttgaatatgatgttagttctcagtgtaacatagtccatttttcttgttcatgtgtaatatacataatatataaaaaggtctttgggaatgaaaaaaaaaaaaaaaaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="94967" stop="45403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94667" g_stop="94322" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94321" i_stop="93392" i_length="930">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.957" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93391" g_stop="93347" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="385" r_length="45" r_score="0.578"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E610986" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610986" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94667" e_stop="94322"/>
          <exon e_start="93391" e_stop="93347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATATATCATATCATATTATATTATAAGTGGGTAGCCTCTACTTCAAAAGTTGAATTACAAAAATGTCCTTATAATATCATAATATTTTTAAACAAAAATGTAAATGTACATTATTTATAAATAAAAACTATTGTATTTTCTATTAAACACTACATATTGATTATAATAAAAAATTAATATTCTAAAAAGAAAGAATTTACCATCTATGACATGAATTCATCTAGATACAATGAACATTTGTAATTAAATGACAAAAGGAAATCAAAAGTTTTGTAACAGTTAAAATGATCATTTAAGTGTACCTCCTTTACTCCTACCGGGTAAAGGTATACAATTCTTTAGATGAATTACATTCATAACATTATATTAGATGCTAAGTAGTTGCTTCAAAAAATACTTACAATGGAAGCTTGCGATCGTTGAACTTTCAATTTTCTTTCTGTTATAATTAGCGCAAACTGTAACGACCTGTTTAGTCGTTTAGAGCAGCAGATTTTATTTCTGAAAAAAAACAGGCTGAGGCGACGGATCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAGAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGATTATTCAGTGGAAATTGAGTCTCTGACCCTTGCGACGACCTGCAGGACGGACCCTCGCAGGCACGACGGGCCGTCGCAGGTTGCGCAATCCCAGTCTGGGTCAGATTTCTTGATACGTTTTAAGGGACGTTTTTGACTATTCTTGCCTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGA</genome_strand>
        <mrna_strand>AGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTGA---TACGTCAAA-G-GAAAGTTAAGGAGAAAACAGCCAAGATGGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGCAAGTGGTGAAGGTGTTGTGAGCTATGCAGAATATGCCAGTTTTGCCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAAT-ATACATAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAAAAAGGTCTTTGGGAATGAAAAAAAAAAAAAAAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398206" ref_strand="+" ref_description="SGN-E398206 [TUS-14-K20](-)">
      <seq>ttatattcctccagaatatgcatacacaatgagagtcacaatggctggaaatgtatatagctttggggtcgttttgctggaattgttgacaggaaggcctgcagttagtcagggaaccgagttagccaagtcagtgctgagcaactctgagaagcacagcaagtgggatcacattctggattctagcatttctaaggcatcgctcaacgttaggagccagatgttagcagtcctcaaattggctctagcttgtgtcagtgtatcaccagaaggccggccaaagatgaagagtgtgcttcgagtgcttctccatgcaaggtaatcgtacgtcaaaggagaaagtcaaggagaaaacagccaagattgttttcttctttttcttttggggaggagctgtaagtggtgaaggtgttgtgatctatgcagaatatgccagttttgtcagtttatacatattatattaatgtaaacatatagatatatgatgatagtagctacataactttgaatatgatgttagttctcagtgtaacatagtccatttttcttgttcatgtgtaatcatatatatatcatatcatattatattataagtgggtagcctctacttcaaaagttgaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="95192" stop="93963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94878" g_stop="94264" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="629" r_length="615" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E398206" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94878" e_stop="94264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGCATACACAATGAGAGTCACAATGGCTGGAAATGTATATAGCTTTGGGGTCGTTCTGCTGGAATTGTTGACAGGAAGGCCTGCAGTTAGTCAGGGAACCGAGTTAGCCAAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATATATCATATCATATTATATTATAAGTGGGTAGCCTCTACTTCAAAAGTTGAATTACAAAA</genome_strand>
        <mrna_strand>AATATGCATACACAATGAGAGTCACAATGGCTGGAAATGTATATAGCTTTGGGGTCGTTTTGCTGGAATTGTTGACAGGAAGGCCTGCAGTTAGTCAGGGAACCGAGTTAGCCAAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATATATCATATCATATTATATTATAAGTGGGTAGCCTCTACTTCAAAAGTTGAATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371697" ref_strand="+" ref_description="SGN-E371697 [TUS-29-O16](-)">
      <seq>caagtcagtgctgagcaactctgagaagcacagcaagtgggatcacattctggattctagcatttctaaggcatcgctcaacgttaggagccagatgttagcagtcctcaaattggctctagcttgtgtcagtgtatcaccagaaggccggccaaagatgaagagtgtgcttcgagtgcttctccatgcaaggtaatcgtacgtcaaaggagaaagtcaaggagaaaacagccaagattgttttcttctttttcttttggggaggagctgtaagtggtgaaggtgttgtgatctatgcagaatatgccagttttgtcagtttatacatattatattaatgtaaacatatagatatatgatgatagtagctacataactttgaatatgatgttagttctcagtgtaacatagtccatttttcttgttcatgtgtaatcatatatatatcatatcatattatattataagtgggtagcctctacttcaaaagttgaattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="95066" stop="93963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94766" g_stop="94264" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E371697" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94766" e_stop="94264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATATATCATATCATATTATATTATAAGTGGGTAGCCTCTACTTCAAAAGTTGAATTACAAAA</genome_strand>
        <mrna_strand>CAAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATATATCATATCATATTATATTATAAGTGGGTAGCCTCTACTTCAAAAGTTGAATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282713" ref_strand="+" ref_description="SGN-E282713 [cLER-15-D6]">
      <seq>aagtcagtgctgagcaactctgagaagcacagcaagtgggatcacattctggattctagcatttctaaggcatcgctcaacgttaggagccagatgttagcagtcctcaaattggctctagcttgtgtcagtgtatcaccagaaggccggccaaagatgaagagtgtgcttcgagtgcttctccatgcaaggtaatcgtacgtcaaaggagaaagtcaaggagaaaacagccaagattgttttcttctttttcttttggggaggagctgtaagtggtgaaggtgttgtgatctatgcagaatatgccagttttgtcagtttatacatattatattaatgtaaacatatagatatatgatgatagtagctacataactttgaatatgatgttagttctcagtgtaacatagtccatttttcttgttcatgtgtaatcatatatatatcatatcatattatattataagcgggtagcctctacttcaaaagttgaattaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="95065" stop="93964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94765" g_stop="94265" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E282713" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94765" e_stop="94265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATATATCATATCATATTATATTATAAGTGGGTAGCCTCTACTTCAAAAGTTGAATTACAAA</genome_strand>
        <mrna_strand>AAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATATATCATATCATATTATATTATAAGCGGGTAGCCTCTACTTCAAAAGTTGAATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371698" ref_strand="+" ref_description="SGN-E371698 [TUS-29-O16]">
      <seq>aagtcagtgctgagcaactctgagaagcacagcaagtgggatcacattctggattctagcatttctaaggcatcgctcaacgttaggagccagatgttagcagtcctcaaattggctctagcttgtgtcagtgtatcaccagaaggccggccaaagatgaagagtgtgcttcgagtgcttctccatgcaaggtaatcgtacgtcaaaggagaaagtcaaggagaaaacagccaagattgttttcttctttttcttttggggaggagctgtaagtggtgaaggtgttgtgatctatgcagaatatgccagttttgtcagtttatacatattatattaatgtaaacatatagatatatgatgatagtagctacataactttgaatatgatgttagttctcagtgtaacatagtccatttttcttgttcatgtgtaatcatatatatatcatatcatattatattataagtgggtagcctctacttcataagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="95065" stop="93973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94765" g_stop="94273" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E371698" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94765" e_stop="94273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATATATCATATCATATTATATTATAAGTGGGTAGCCTCTACTTCAAAAGTTGA</genome_strand>
        <mrna_strand>AAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATATATCATATCATATTATATTATAAGTGGGTAGCCTCTACTTCATAAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740259" ref_strand="+" ref_description="SGN-E740259 [LC20CH08]">
      <seq>aggagacattgaactctacaaggtgatggatccttcgaagagcacaggcagcttttctgctgttgctggttctgtcggttatattcctccagaatatgcatacacaatgagagtcacaatggctggaaatgtatatagctttggggtcgttctgctggaattgttgacaggaaggcctgcagttagtcagggaaccgagttagccaagtcagtgctgagcaactctgagaagcacagcaagtgggatcacattctggattctagcatttctaaggcatcgctcaacgttaggagccagatgttagcagtcctcaaattggctctagcttgtgtcagtgtatcaccagaaggccggccaaagatgaagagtgtgcttcgagtgcttctccatgcaaggtaatcgtacgtcaaaggaaagttaaggagaaaacagccaagattgttttcttctttttcttttggggaggagctgtaagtggtgaaggtgttgtgagctatgcagaatatgccagttttgtcagtttatacatattatattaatgtaaacatatagatatatgatgatagtagctacataactttgaatatgatgttagttctcagtgtaacatagtccatttttcttgttcatgtgtaatcatatatatatcatatcatattatattataagtgggtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="95589" stop="43151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95289" g_stop="95198" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95197" i_stop="94879" i_length="319">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94878" g_stop="94276" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="693" r_length="601" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E740259" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95289" e_stop="95198"/>
          <exon e_start="94878" e_stop="94276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTTGCTGGTTCTGTCGGTTATATTCCTCCAGGTAATGAACTATAACTTGGTTAATGGTTAAATTTTAAGATCCCTCAACATTGATTTGTACTCCTTATTGGTAATGTAACGTTTCCTGTCCTAACCGCCGTACCATGCTTTTAACTCATCTTTTTGTGTTTAATCTTCATATAGTTATTGTTGTTTTCAAACTTAAGACTTCATTATAAACGGTGTTGAACTGTCTTTCGATATCTAAAGTGAAACAGTCTGTCAGTATAGCTTCGAGGGGGAGGGGTGGATTAAAATGTAACATGAGAAGCCTCAAGTTGAGCATATATTTAGTAATGCATTTCCTTTTTGTGTTACAGAATATGCATACACAATGAGAGTCACAATGGCTGGAAATGTATATAGCTTTGGGGTCGTTCTGCTGGAATTGTTGACAGGAAGGCCTGCAGTTAGTCAGGGAACCGAGTTAGCCAAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATATATCATATCATATTATATTATAAGTGGGTAGCCTCTACTTCAAAAGT</genome_strand>
        <mrna_strand>AGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTTGCTGGTTCTGTCGGTTATATTCCTCCAG...............................................................................................................................................................................................................................................................................................................................AATATGCATACACAATGAGAGTCACAATGGCTGGAAATGTATATAGCTTTGGGGTCGTTCTGCTGGAATTGTTGACAGGAAGGCCTGCAGTTAGTCAGGGAACCGAGTTAGCCAAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAA-G-GAAAGTTAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGAGCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATATATCATATCATATTATATTATAAGTGGGTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379180" ref_strand="+" ref_description="SGN-E379180 [TUS-1-G2](-)">
      <seq>agcaagagcatcttcttgaagtcccagaatgaggctcagataggagacattgaactctacaaggtgatggatccttcgaagagcacaggcagcttttctgctgttgctggttctgtcggttatattcctccagaatatgcatacacaatgagagtcacaatggctggaaatgtatatagctttggggtcgttctgctggaattgttgacaggaaggcctgcagttagtcagggaaccgagttagccaagtcagtgctgagcaactctgagaagcacagcaagtgggatcacattctggattctagcatttctaaggcatcgctcaacgttaggagccagatgttagcagtcctcaaattggctctagcttgtgtcagtgtatcaccagaaggccggccaaagatgaagagtgtgcttcgagtgcttctccatgcaaggtaatcgtacgtcaaaggagaaagtcaaggagaaaacagccaagattgttttcttctttttcttttggggaggagctgtaagtggtgaaggtgttgtgatctatgcagaatatgccagttttgtcagtttatacatattatattaatgtaaacatatagatatatgatgatagtagctacataactttgaatatgatgttagttctcagtgtaacatagtccatttttctggaacatgtgtaatcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="95630" stop="94026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95330" g_stop="95198" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95197" i_stop="94879" i_length="319">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94878" g_stop="94326" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="686" r_length="553" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E379180" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95330" e_stop="95198"/>
          <exon e_start="94878" e_stop="94326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGAGCATTCTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTTGCTGGTTCTGTCGGTTATATTCCTCCAGGTAATGAACTATAACTTGGTTAATGGTTAAATTTTAAGATCCCTCAACATTGATTTGTACTCCTTATTGGTAATGTAACGTTTCCTGTCCTAACCGCCGTACCATGCTTTTAACTCATCTTTTTGTGTTTAATCTTCATATAGTTATTGTTGTTTTCAAACTTAAGACTTCATTATAAACGGTGTTGAACTGTCTTTCGATATCTAAAGTGAAACAGTCTGTCAGTATAGCTTCGAGGGGGAGGGGTGGATTAAAATGTAACATGAGAAGCCTCAAGTTGAGCATATATTTAGTAATGCATTTCCTTTTTGTGTTACAGAATATGCATACACAATGAGAGTCACAATGGCTGGAAATGTATATAGCTTTGGGGTCGTTCTGCTGGAATTGTTGACAGGAAGGCCTGCAGTTAGTCAGGGAACCGAGTTAGCCAAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATAT</genome_strand>
        <mrna_strand>AGCAAGAGCATCTTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTTGCTGGTTCTGTCGGTTATATTCCTCCAG...............................................................................................................................................................................................................................................................................................................................AATATGCATACACAATGAGAGTCACAATGGCTGGAAATGTATATAGCTTTGGGGTCGTTCTGCTGGAATTGTTGACAGGAAGGCCTGCAGTTAGTCAGGGAACCGAGTTAGCCAAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTGGAACATGTGTAATCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705549" ref_strand="+" ref_description="SGN-E705549 [FA27BH04]">
      <seq>tataaagctgttatgccgtcgggtacaacctattttgtcaagaagcttaattggagtgacaaaatatttcagttgggaagccatgaactatttggggaagagttaagaaatattggaaagctgaataattcgaatgtcatgattccactaggctatcttttggctgctgatagtgcttacctcttctacgaatttgcccccattggctcgttatatgatgttcttcgtggtagcttgggctactcgttagattgggcaagtcgctacagcatagctattggagtagctcagggtttagcttttcttcatggatgtgacaagggtccaatcctcctcctcgacctttccagcaagagcattctcttgaagtcccagaatgaggctcagataggagacattgaactctacaaggtgatggatccttcgaagagcacaggcagcttttctgctgttgctggttctgtcggttatattcctccagaatatgcatacacaatgagagtcacaatggctggaaatgtatatagctttggggtcgttctgctggaattgttgacaggaaggcctgcagttagtcagggaaccgagttagccaagtcagtgctgagcaactctgagaagcacagcaagtgggatcacattctggattctagcatttctaaggcatcgctcaacgttaggagccagatgttagcagtcctcaaattggctctagcttgtgtcagtgtatcaccagaaggccggccaaagatgaagagtgtgcttcgagtgcttctcccatgcaggtaatcgtacgtcaaaggaaagttaaggagaaaacagccaagattgttttcttctttttcttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="95978" stop="94207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95678" g_stop="95198" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95197" i_stop="94879" i_length="319">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94878" g_stop="94507" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="851" r_length="370" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E705549" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95678" e_stop="95198"/>
          <exon e_start="94878" e_stop="94507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAAGCTGTTATGCCGTCGGGTACAACCTATTTTGTCAAGAAGCTTAATTGGAGTGACAAAATATTTCAGTTGGGAAGCCATGAACTATTTGGGGAAGAGTTAAGAAATATTGGAAAGCTGAATAATTCGAATGTCATGATTCCACTAGGCTATCTTTTGGCTGCTGATAGTGCTTACCTCTTCTACGAATTTGCCCCCATTGGCTCGTTATATGATGTTCTTCGTGGTAGCTTGGGCTACTCGTTAGATTGGGCAAGTCGCTACAGCATAGCTATTGGAGTAGCTCAGGGTTTAGCTTTTCTTCATGGATGTGACAAGGGTCCAATCCTCCTCCTCGACCTTTCCAGCAAGAGCATTCTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTTGCTGGTTCTGTCGGTTATATTCCTCCAGGTAATGAACTATAACTTGGTTAATGGTTAAATTTTAAGATCCCTCAACATTGATTTGTACTCCTTATTGGTAATGTAACGTTTCCTGTCCTAACCGCCGTACCATGCTTTTAACTCATCTTTTTGTGTTTAATCTTCATATAGTTATTGTTGTTTTCAAACTTAAGACTTCATTATAAACGGTGTTGAACTGTCTTTCGATATCTAAAGTGAAACAGTCTGTCAGTATAGCTTCGAGGGGGAGGGGTGGATTAAAATGTAACATGAGAAGCCTCAAGTTGAGCATATATTTAGTAATGCATTTCCTTTTTGTGTTACAGAATATGCATACACAATGAGAGTCACAATGGCTGGAAATGTATATAGCTTTGGGGTCGTTCTGCTGGAATTGTTGACAGGAAGGCCTGCAGTTAGTCAGGGAACCGAGTTAGCCAAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCT-CCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGG</genome_strand>
        <mrna_strand>TATAAAGCTGTTATGCCGTCGGGTACAACCTATTTTGTCAAGAAGCTTAATTGGAGTGACAAAATATTTCAGTTGGGAAGCCATGAACTATTTGGGGAAGAGTTAAGAAATATTGGAAAGCTGAATAATTCGAATGTCATGATTCCACTAGGCTATCTTTTGGCTGCTGATAGTGCTTACCTCTTCTACGAATTTGCCCCCATTGGCTCGTTATATGATGTTCTTCGTGGTAGCTTGGGCTACTCGTTAGATTGGGCAAGTCGCTACAGCATAGCTATTGGAGTAGCTCAGGGTTTAGCTTTTCTTCATGGATGTGACAAGGGTCCAATCCTCCTCCTCGACCTTTCCAGCAAGAGCATTCTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTTGCTGGTTCTGTCGGTTATATTCCTCCAG...............................................................................................................................................................................................................................................................................................................................AATATGCATACACAATGAGAGTCACAATGGCTGGAAATGTATATAGCTTTGGGGTCGTTCTGCTGGAATTGTTGACAGGAAGGCCTGCAGTTAGTCAGGGAACCGAGTTAGCCAAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCCATGC-AGGTAATCGTACGTCAAA-G-GAAAGTTAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E380072" ref_strand="+" ref_description="SGN-E380072 [TUS-1-G2]">
      <seq>tatgccgtcgggtacaacctattttgtcaagaagcttaattggagtgacaaaatatttcagttgggaagccatgaactatttggggaagagttaagaaatattggaaagctgaataattcgaatgtcatgattccactaggctatcttttggctgctgatagtgcttacctcttctacgaatttgcccccattggctcgttatatgatgttcttcgtggtagcttgggctactcgttagattgggcaagtcgctacagcatagctattggagtagctcagggtttagcttttcttcatggatgtgacaagggtccaatcctcctcctcgacctttccagcaagagcattctcttgaagtcccagaatgaggctcagataggagacattgaactctacaaggtgatggatccttcgaagagcacaggcagcttttctgctgttgctggttctgtcggttatattcctccagaatatgcatacacaatgagagtcacaatggctggaaatgtatatagctttggggtcgttctgctggaattgttgacaggaaggcctgcagttagtcagggaaccgagttagccaagtcagtgctgagcaactctgagaaagcacagcagtgggatcacattctggattctagcatttctaaggcatcgctcaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="95967" stop="94384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95667" g_stop="95198" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95197" i_stop="94879" i_length="319">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94878" g_stop="94684" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="665" r_length="195" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E380072" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95667" e_stop="95198"/>
          <exon e_start="94878" e_stop="94684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCCGTCGGGTACAACCTATTTTGTCAAGAAGCTTAATTGGAGTGACAAAATATTTCAGTTGGGAAGCCATGAACTATTTGGGGAAGAGTTAAGAAATATTGGAAAGCTGAATAATTCGAATGTCATGATTCCACTAGGCTATCTTTTGGCTGCTGATAGTGCTTACCTCTTCTACGAATTTGCCCCCATTGGCTCGTTATATGATGTTCTTCGTGGTAGCTTGGGCTACTCGTTAGATTGGGCAAGTCGCTACAGCATAGCTATTGGAGTAGCTCAGGGTTTAGCTTTTCTTCATGGATGTGACAAGGGTCCAATCCTCCTCCTCGACCTTTCCAGCAAGAGCATTCTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTTGCTGGTTCTGTCGGTTATATTCCTCCAGGTAATGAACTATAACTTGGTTAATGGTTAAATTTTAAGATCCCTCAACATTGATTTGTACTCCTTATTGGTAATGTAACGTTTCCTGTCCTAACCGCCGTACCATGCTTTTAACTCATCTTTTTGTGTTTAATCTTCATATAGTTATTGTTGTTTTCAAACTTAAGACTTCATTATAAACGGTGTTGAACTGTCTTTCGATATCTAAAGTGAAACAGTCTGTCAGTATAGCTTCGAGGGGGAGGGGTGGATTAAAATGTAACATGAGAAGCCTCAAGTTGAGCATATATTTAGTAATGCATTTCCTTTTTGTGTTACAGAATATGCATACACAATGAGAGTCACAATGGCTGGAAATGTATATAGCTTTGGGGTCGTTCTGCTGGAATTGTTGACAGGAAGGCCTGCAGTTAGTCAGGGAACCGAGTTAGCCAAGTCAGTGCTGAGCAACTCTGAG-AAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACG</genome_strand>
        <mrna_strand>TATGCCGTCGGGTACAACCTATTTTGTCAAGAAGCTTAATTGGAGTGACAAAATATTTCAGTTGGGAAGCCATGAACTATTTGGGGAAGAGTTAAGAAATATTGGAAAGCTGAATAATTCGAATGTCATGATTCCACTAGGCTATCTTTTGGCTGCTGATAGTGCTTACCTCTTCTACGAATTTGCCCCCATTGGCTCGTTATATGATGTTCTTCGTGGTAGCTTGGGCTACTCGTTAGATTGGGCAAGTCGCTACAGCATAGCTATTGGAGTAGCTCAGGGTTTAGCTTTTCTTCATGGATGTGACAAGGGTCCAATCCTCCTCCTCGACCTTTCCAGCAAGAGCATTCTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTTGCTGGTTCTGTCGGTTATATTCCTCCAG...............................................................................................................................................................................................................................................................................................................................AATATGCATACACAATGAGAGTCACAATGGCTGGAAATGTATATAGCTTTGGGGTCGTTCTGCTGGAATTGTTGACAGGAAGGCCTGCAGTTAGTCAGGGAACCGAGTTAGCCAAGTCAGTGCTGAGCAACTCTGAGAAAGCACAGC-AGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258488" ref_strand="+" ref_description="SGN-E258488 [cLEG-47-P16]">
      <seq>aggagtacaaatttctcaatcccctgtcgttcagggaaaggttttaactgcaaacagcattcacaagtcaaatatagacttcacaaaggccatggtagcagtgtctgagccctcaaatgttgtgttcaagacaagattttcaacctactataaagctgttatgccgtcgggtacaacctattttgtcaagaagcttaattggagtgacaaaatatttcagttgggaagccatgaactatttggggaagagttaagaaatattggaaagctgaataattcgaatgtcatgattccactaggctatcttttggctgctgatagtgcttacctcttctacgaatttgcccccattggctcgttatatgatgttcttcgtggtagcttgggctactcgttagattgggcaagtcgctacagcatagctattggagtagctcagggtttagcttttcttcatggatgtgacaagggtccaatcctcctcctcgacctttccagcaagagcattctcttgaagtcccagaatgaggctcagataggagacattgaactctacaaggtgatggatccttcgaagagcacaggcagcttttctgctgttgctggttctgtcggttatattcctccagaatatgcatacacaatgagagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="96126" stop="94556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95826" g_stop="95198" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95197" i_stop="94879" i_length="319">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94878" g_stop="94856" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="652" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E258488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95826" e_stop="95198"/>
          <exon e_start="94878" e_stop="94856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTACAAATTTCTCAATCCCCTGTCGTTCAGGGAAAGGTTTTAACTGCAAACAGCATTCACAAGTCAAATATAGACTTCACAAAGGCCATGGTAGCAGTGTCTGAGCCCTCAAATGTTGTGTTCAAGACAAGATTTTCAACCTACTATAAAGCTGTTATGCCGTCGGGTACAACCTATTTTGTCAAGAAGCTTAATTGGAGTGACAAAATATTTCAGTTGGGAAGCCATGAACTATTTGGGGAAGAGTTAAGAAATATTGGAAAGCTGAATAATTCGAATGTCATGATTCCACTAGGCTATCTTTTGGCTGCTGATAGTGCTTACCTCTTCTACGAATTTGCCCCCATTGGCTCGTTATATGATGTTCTTCGTGGTAGCTTGGGCTACTCGTTAGATTGGGCAAGTCGCTACAGCATAGCTATTGGAGTAGCTCAGGGTTTAGCTTTTCTTCATGGATGTGACAAGGGTCCAATCCTCCTCCTCGACCTTTCCAGCAAGAGCATTCTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTTGCTGGTTCTGTCGGTTATATTCCTCCAGGTAATGAACTATAACTTGGTTAATGGTTAAATTTTAAGATCCCTCAACATTGATTTGTACTCCTTATTGGTAATGTAACGTTTCCTGTCCTAACCGCCGTACCATGCTTTTAACTCATCTTTTTGTGTTTAATCTTCATATAGTTATTGTTGTTTTCAAACTTAAGACTTCATTATAAACGGTGTTGAACTGTCTTTCGATATCTAAAGTGAAACAGTCTGTCAGTATAGCTTCGAGGGGGAGGGGTGGATTAAAATGTAACATGAGAAGCCTCAAGTTGAGCATATATTTAGTAATGCATTTCCTTTTTGTGTTACAGAATATGCATACACAATGAGAGTC</genome_strand>
        <mrna_strand>AGGAGTACAAATTTCTCAATCCCCTGTCGTTCAGGGAAAGGTTTTAACTGCAAACAGCATTCACAAGTCAAATATAGACTTCACAAAGGCCATGGTAGCAGTGTCTGAGCCCTCAAATGTTGTGTTCAAGACAAGATTTTCAACCTACTATAAAGCTGTTATGCCGTCGGGTACAACCTATTTTGTCAAGAAGCTTAATTGGAGTGACAAAATATTTCAGTTGGGAAGCCATGAACTATTTGGGGAAGAGTTAAGAAATATTGGAAAGCTGAATAATTCGAATGTCATGATTCCACTAGGCTATCTTTTGGCTGCTGATAGTGCTTACCTCTTCTACGAATTTGCCCCCATTGGCTCGTTATATGATGTTCTTCGTGGTAGCTTGGGCTACTCGTTAGATTGGGCAAGTCGCTACAGCATAGCTATTGGAGTAGCTCAGGGTTTAGCTTTTCTTCATGGATGTGACAAGGGTCCAATCCTCCTCCTCGACCTTTCCAGCAAGAGCATTCTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTTGCTGGTTCTGTCGGTTATATTCCTCCAG...............................................................................................................................................................................................................................................................................................................................AATATGCATACACAATGAGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394368" ref_strand="+" ref_description="SGN-E394368 [TUS-14-K20]">
      <seq>ttatgccgtcgggtacaacctattttgtcaagaagcttaattggagtgacaaaatatttcagttgggaagccatgaactatttggggaagagttaagaaatattggaaagctgaataattcgaatgtcatgattccactaggctatcttttggctgctgatagtgcttacctcttctacgaatttgcccccattggctcgttatatgatgttcttcgtggtagcttgggctactcgttagattgggcaagtcgctacagcatagctattggagtagctcagggtttagcttttcttcatggatgtgacaagggtccaatcctcctcctcgacctttccagcaagagcattctcttgaagtcaganaatnangctcagataggagacattgaactctacaaggtggatggaggggggggggagcacgggccgcttttctgctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="95968" stop="94960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95668" g_stop="95226" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E394368" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95668" e_stop="95226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCCGTCGGGTACAACCTATTTTGTCAAGAAGCTTAATTGGAGTGACAAAATATTTCAGTTGGGAAGCCATGAACTATTTGGGGAAGAGTTAAGAAATATTGGAAAGCTGAATAATTCGAATGTCATGATTCCACTAGGCTATCTTTTGGCTGCTGATAGTGCTTACCTCTTCTACGAATTTGCCCCCATTGGCTCGTTATATGATGTTCTTCGTGGTAGCTTGGGCTACTCGTTAGATTGGGCAAGTCGCTACAGCATAGCTATTGGAGTAGCTCAGGGTTTAGCTTTTCTTCATGGATGTGACAAGGGTCCAATCCTCCTCCTCGACCTTTCCAGCAAGAGCATTCTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGT-GATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTT</genome_strand>
        <mrna_strand>TTATGCCGTCGGGTACAACCTATTTTGTCAAGAAGCTTAATTGGAGTGACAAAATATTTCAGTTGGGAAGCCATGAACTATTTGGGGAAGAGTTAAGAAATATTGGAAAGCTGAATAATTCGAATGTCATGATTCCACTAGGCTATCTTTTGGCTGCTGATAGTGCTTACCTCTTCTACGAATTTGCCCCCATTGGCTCGTTATATGATGTTCTTCGTGGTAGCTTGGGCTACTCGTTAGATTGGGCAAGTCGCTACAGCATAGCTATTGGAGTAGCTCAGGGTTTAGCTTTTCTTCATGGATGTGACAAGGGTCCAATCCTCCTCCTCGACCTTTCCAGCAAGAGCATTCTCTTGAAGTCAGANAATNANGCTCAGATAGGAGACATTGAACTCTACAAGGTGGATGGAGGGGGGGGGGAGCACGGGCCGCTTTTCTGCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202087" ref_strand="+" ref_description="SGN-E202087 [cLEC-7-C9]">
      <seq>tatgccgtcgggtacaacctattttgtcaagaagcttaattggagtgacaaaatatttcagttgggaagccatgaactatttggggaagagttaagaaatattggaaagctgaataattcgaatgtcatgattccactaggctatcttttggctgctgatagtgcttacctcttctacgaatttgcccccattggctcgttatatgatgttcttcgtggtagcttgggctactcgttagattgggcaagtcgctacagcatagctattggagtagctcagggtttagcttttcttcatggatgtgacaagggtccaatcctcctcctcgacctttccagcaagagcattctcttgaagtcccagaatgaggctcagataggagacattgaactctacaaggtgatggatccttcgaagagcacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="95967" stop="94943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95667" g_stop="95243" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E202087" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95667" e_stop="95243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCCGTCGGGTACAACCTATTTTGTCAAGAAGCTTAATTGGAGTGACAAAATATTTCAGTTGGGAAGCCATGAACTATTTGGGGAAGAGTTAAGAAATATTGGAAAGCTGAATAATTCGAATGTCATGATTCCACTAGGCTATCTTTTGGCTGCTGATAGTGCTTACCTCTTCTACGAATTTGCCCCCATTGGCTCGTTATATGATGTTCTTCGTGGTAGCTTGGGCTACTCGTTAGATTGGGCAAGTCGCTACAGCATAGCTATTGGAGTAGCTCAGGGTTTAGCTTTTCTTCATGGATGTGACAAGGGTCCAATCCTCCTCCTCGACCTTTCCAGCAAGAGCATTCTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAG</genome_strand>
        <mrna_strand>TATGCCGTCGGGTACAACCTATTTTGTCAAGAAGCTTAATTGGAGTGACAAAATATTTCAGTTGGGAAGCCATGAACTATTTGGGGAAGAGTTAAGAAATATTGGAAAGCTGAATAATTCGAATGTCATGATTCCACTAGGCTATCTTTTGGCTGCTGATAGTGCTTACCTCTTCTACGAATTTGCCCCCATTGGCTCGTTATATGATGTTCTTCGTGGTAGCTTGGGCTACTCGTTAGATTGGGCAAGTCGCTACAGCATAGCTATTGGAGTAGCTCAGGGTTTAGCTTTTCTTCATGGATGTGACAAGGGTCCAATCCTCCTCCTCGACCTTTCCAGCAAGAGCATTCTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316136" ref_strand="+" ref_description="SGN-E316136 [cTOA-23-J16]">
      <seq>aaacttgaatttgcaggggaataaactaagcggtcgaattccggttgacattagtaacttaaatgtgctgttagaactccaacttggagggaaccaactcagtgggcctattcctgatatgccattgagtttacagattgctttgaatctgagtcacaatctttttcaaggacctataccaagtagtttttctagattgacttcattggaagttttggatctctcttacaacaggttctcgggtcagattccagagtacctggccggaatgaaaggcttgactaggttggtgctttcaaacaatcaactgtctggagttgttccaaagtttggaagttttgtcattgttgatacagatggaaatggggttctgatctatccttcaccagttgctccaccacaagctgctgcaaaaaagagaaaatcaatagttgttgcagttgttgtcccaattgcaggtgtagcaacaattgccattttcgtggtgattgctatttcaatctctagaagatattacaggatcaatgatgaacattttcactcaggagtacaaatttctcaatcccctgtcgttcagggaaaggttttaactgcaaacagcattcacaagtcaaatatagacttcacaaaggccatgggtagcagtgtctgagccctcaaatgttgtgttcaagacaagattttcaacctactantaagctgttatgccgtcgggtacaacctattttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="96669" stop="95341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96369" g_stop="95641" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E316136" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96369" e_stop="95641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGAATTTGCAGGGGAATAAACTAAGCGGTCGAATTCCGGTTGACATTAGTAACTTAAATGTGCTGTTAGAACTCCAACTTGGAGGGAACCAACTCAGTGGGCCTATTCCTGATATGCCATTGAGTTTACAGATTGCTTTGAATCTGAGTCACAATCTTTTTCAAGGACCTATACCAAGTAGTTTTTCTAGATTGACTTCATTGGAAGTTTTGGATCTCTCTTACAACAGGTTCTCGGGTCAGATTCCAGAGTACCTGGCCGGAATGAAAGGCTTGACTAGGTTGGTGCTTTCAAACAATCAACTGTCTGGAGTTGTTCCAAAGTTTGGAAGTTTTGTCATTGTTGATACAGATGGAAATGGGGTTCTGATCTATCCTTCACCAGTTGCTCCACCACAAGCTGCTGCAAAAAAGAGAAAATCAATAGTTGTTGCAGTTGTTGTCCCAATTGCAGGTGTAGCAACAATTGCCATTTTCGTGGTGATTGCTATTTCAATCTCTAGAAGATATTACAGGATCAATGATGAACATTTTCACTCAGGAGTACAAATTTCTCAATCCCCTGTCGTTCAGGGAAAGGTTTTAACTGCAAACAGCATTCACAAGTCAAATATAGACTTCACAAAGGCCAT-GGTAGCAGTGTCTGAGCCCTCAAATGTTGTGTTCAAGACAAGATTTTCAACCTACTATAAAGCTGTTATGCCGTCGGGTACAACCTATTTTGT</genome_strand>
        <mrna_strand>AAACTTGAATTTGCAGGGGAATAAACTAAGCGGTCGAATTCCGGTTGACATTAGTAACTTAAATGTGCTGTTAGAACTCCAACTTGGAGGGAACCAACTCAGTGGGCCTATTCCTGATATGCCATTGAGTTTACAGATTGCTTTGAATCTGAGTCACAATCTTTTTCAAGGACCTATACCAAGTAGTTTTTCTAGATTGACTTCATTGGAAGTTTTGGATCTCTCTTACAACAGGTTCTCGGGTCAGATTCCAGAGTACCTGGCCGGAATGAAAGGCTTGACTAGGTTGGTGCTTTCAAACAATCAACTGTCTGGAGTTGTTCCAAAGTTTGGAAGTTTTGTCATTGTTGATACAGATGGAAATGGGGTTCTGATCTATCCTTCACCAGTTGCTCCACCACAAGCTGCTGCAAAAAAGAGAAAATCAATAGTTGTTGCAGTTGTTGTCCCAATTGCAGGTGTAGCAACAATTGCCATTTTCGTGGTGATTGCTATTTCAATCTCTAGAAGATATTACAGGATCAATGATGAACATTTTCACTCAGGAGTACAAATTTCTCAATCCCCTGTCGTTCAGGGAAAGGTTTTAACTGCAAACAGCATTCACAAGTCAAATATAGACTTCACAAAGGCCATGGGTAGCAGTGTCTGAGCCCTCAAATGTTGTGTTCAAGACAAGATTTTCAACCTACTANTAAGCTGTTATGCCGTCGGGTACAACCTATTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206493" ref_strand="+" ref_description="SGN-E206493 [cLEC-23-F19]">
      <seq>ttcattggaagttttggatctctcttacaacaggttctcgggtcagattccagagtacctggccggaatgaaaggcttgactaggttggtgctttcaaacaatcaactgtctggagttgttccaaagtttggaagttttgtcattgttgatacagatggaaatggggttctgatctatccttcaccagttgctccaccacaagctgctgcaaaaaagagaaaatcaatagttgttgcagttgttgtcccaattgcaggtgtagcaacaattgccattttcgtggtgattgctatttcaatctctagaagatattacaggatcaatgatgaacattttcactcaggagtacaaatttctcaatcccctgtcgttcagggaaaggttttaactgcaaacagcattcacaagtcaaatatagacttcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="96468" stop="95441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96168" g_stop="95741" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E206493" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96168" e_stop="95741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGGAAGTTTTGGATCTCTCTTACAACAGGTTCTCGGGTCAGATTCCAGAGTACCTGGCCGGAATGAAAGGCTTGACTAGGTTGGTGCTTTCAAACAATCAACTGTCTGGAGTTGTTCCAAAGTTTGGAAGTTTTGTCATTGTTGATACAGATGGAAATGGGGTTCTGATCTATCCTTCACCAGTTGCTCCACCACAAGCTGCTGCAAAAAAGAGAAAATCAATAGTTGTTGCAGTTGTTGTCCCAATTGCAGGTGTAGCAACAATTGCCATTTTCGTGGTGATTGCTATTTCAATCTCTAGAAGATATTACAGGATCAATGATGAACATTTTCACTCAGGAGTACAAATTTCTCAATCCCCTGTCGTTCAGGGAAAGGTTTTAACTGCAAACAGCATTCACAAGTCAAATATAGACTTCACAA</genome_strand>
        <mrna_strand>TTCATTGGAAGTTTTGGATCTCTCTTACAACAGGTTCTCGGGTCAGATTCCAGAGTACCTGGCCGGAATGAAAGGCTTGACTAGGTTGGTGCTTTCAAACAATCAACTGTCTGGAGTTGTTCCAAAGTTTGGAAGTTTTGTCATTGTTGATACAGATGGAAATGGGGTTCTGATCTATCCTTCACCAGTTGCTCCACCACAAGCTGCTGCAAAAAAGAGAAAATCAATAGTTGTTGCAGTTGTTGTCCCAATTGCAGGTGTAGCAACAATTGCCATTTTCGTGGTGATTGCTATTTCAATCTCTAGAAGATATTACAGGATCAATGATGAACATTTTCACTCAGGAGTACAAATTTCTCAATCCCCTGTCGTTCAGGGAAAGGTTTTAACTGCAAACAGCATTCACAAGTCAAATATAGACTTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204713" ref_strand="+" ref_description="SGN-E204713 [cLEC-14-P7]">
      <seq>tcagctcgaattcgttgactggttccataccaagttcattatcaagtttgagaagtctcacaaacttgaatttgcaggggaataaactaagcggtcgaattccggttgacattagtaacttaaatgtgctgttagaactccaacttggagggaaccaactcagtgggcctattcctgatatgccattgagtttacagattgctttgaatctgagtcacaatctttttcaaggacctataccaagtagtttttctagattgacttcattggaagttttggatctctcttacaacaggttctcgggtcagattccagagtacctggccggaatgaaaggcttgactaggttggtgctttcaaacaatcaactgtctggagttgttccaaagtttggaagttttgtcattgttgatacagatggaaatggggttctgatctatccttcaccagttgctccaccacaagctgctgcaaaaaagagaaaatcaatagttgttgcagttgttgtcccaattgcaggtgtagcaacaattgccattttcgtggtgattgctatttcaatctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="96730" stop="95564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96430" g_stop="95864" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E204713" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96430" e_stop="95864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTCGAATTCGTTGACTGGTTCCATACCAAGTTCATTATCAAGTTTGAGAAGTCTCACAAACTTGAATTTGCAGGGGAATAAACTAAGCGGTCGAATTCCGGTTGACATTAGTAACTTAAATGTGCTGTTAGAACTCCAACTTGGAGGGAACCAACTCAGTGGGCCTATTCCTGATATGCCATTGAGTTTACAGATTGCTTTGAATCTGAGTCACAATCTTTTTCAAGGACCTATACCAAGTAGTTTTTCTAGATTGACTTCATTGGAAGTTTTGGATCTCTCTTACAACAGGTTCTCGGGTCAGATTCCAGAGTACCTGGCCGGAATGAAAGGCTTGACTAGGTTGGTGCTTTCAAACAATCAACTGTCTGGAGTTGTTCCAAAGTTTGGAAGTTTTGTCATTGTTGATACAGATGGAAATGGGGTTCTGATCTATCCTTCACCAGTTGCTCCACCACAAGCTGCTGCAAAAAAGAGAAAATCAATAGTTGTTGCAGTTGTTGTCCCAATTGCAGGTGTAGCAACAATTGCCATTTTCGTGGTGATTGCTATTTCAATCTCTA</genome_strand>
        <mrna_strand>TCAGCTCGAATTCGTTGACTGGTTCCATACCAAGTTCATTATCAAGTTTGAGAAGTCTCACAAACTTGAATTTGCAGGGGAATAAACTAAGCGGTCGAATTCCGGTTGACATTAGTAACTTAAATGTGCTGTTAGAACTCCAACTTGGAGGGAACCAACTCAGTGGGCCTATTCCTGATATGCCATTGAGTTTACAGATTGCTTTGAATCTGAGTCACAATCTTTTTCAAGGACCTATACCAAGTAGTTTTTCTAGATTGACTTCATTGGAAGTTTTGGATCTCTCTTACAACAGGTTCTCGGGTCAGATTCCAGAGTACCTGGCCGGAATGAAAGGCTTGACTAGGTTGGTGCTTTCAAACAATCAACTGTCTGGAGTTGTTCCAAAGTTTGGAAGTTTTGTCATTGTTGATACAGATGGAAATGGGGTTCTGATCTATCCTTCACCAGTTGCTCCACCACAAGCTGCTGCAAAAAAGAGAAAATCAATAGTTGTTGCAGTTGTTGTCCCAATTGCAGGTGTAGCAACAATTGCCATTTTCGTGGTGATTGCTATTTCAATCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205270" ref_strand="+" ref_description="SGN-E205270 [cLEC-25-L21]">
      <seq>tggacctcagttttaacacattaaatggtacaattcctcaggacctcttattcccaatgaacttgcagtttgttgatctcacttccaataagttagagggacctgttccttcaaacatgtcgataaatctgatcaggttgagattggggcaaaatgctttgagtgggtcatttccatctgcttcttttgaaagccttcaaagtttgacctacttggaactggacaacaaccagttaactggaccaattccttctgaattggggaagtgccaaaagttggcccttttgaacttagctcagaataagctgagtggtgtaattcctgttgagttgggtgatatgtctaatcttcaggtactgagtcttcaatccaataacctagttggagaaatcccaagtaatatctcacagttgaacagattgcagaaactcaatttcagctcgaattcgttgactggttccataccaagttcattatcaagtttgagaagtctcacaaacttgaatttgcaggggaataaactaagcggtcgaattccggttgacattagtaacttaaatgtgctgttagaactccaacttggagggaaccaactcagtgggcctattcctgatatgccattgagtttacagattgctttgaatctgagtcacaatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="97165" stop="95905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96865" g_stop="96205" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E205270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96865" e_stop="96205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACCTCAGTTTTAACACATTAAATGGTACAATTCCTCAGGACCTCTTATTCCCAATGAACTTGCAGTTTGTTGATCTCACTTCCAATAAGTTAGAGGGACCTGTTCCTTCAAACATGTCGATAAATCTGATCAGGTTGAGATTGGGGCAAAATGCTTTGAGTGGGTCATTTCCATCTGCTTCTTTTGAAAGCCTTCAAAGTTTGACCTACTTGGAACTGGACAACAACCAGTTAACTGGACCAATTCCTTCTGAATTGGGGAAGTGCCAAAAGTTGGCCCTTTTGAACTTAGCTCAGAATAAGCTGAGTGGTGTAATTCCTGTTGAGTTGGGTGATATGTCTAATCTTCAGGTACTGAGTCTTCAATCCAATAACCTAGTTGGAGAAATCCCAAGTAATATCTCACAGTTGAACAGATTGCAGAAACTCAATTTCAGCTCGAATTCGTTGACTGGTTCCATACCAAGTTCATTATCAAGTTTGAGAAGTCTCACAAACTTGAATTTGCAGGGGAATAAACTAAGCGGTCGAATTCCGGTTGACATTAGTAACTTAAATGTGCTGTTAGAACTCCAACTTGGAGGGAACCAACTCAGTGGGCCTATTCCTGATATGCCATTGAGTTTACAGATTGCTTTGAATCTGAGTCACAATCTTTT</genome_strand>
        <mrna_strand>TGGACCTCAGTTTTAACACATTAAATGGTACAATTCCTCAGGACCTCTTATTCCCAATGAACTTGCAGTTTGTTGATCTCACTTCCAATAAGTTAGAGGGACCTGTTCCTTCAAACATGTCGATAAATCTGATCAGGTTGAGATTGGGGCAAAATGCTTTGAGTGGGTCATTTCCATCTGCTTCTTTTGAAAGCCTTCAAAGTTTGACCTACTTGGAACTGGACAACAACCAGTTAACTGGACCAATTCCTTCTGAATTGGGGAAGTGCCAAAAGTTGGCCCTTTTGAACTTAGCTCAGAATAAGCTGAGTGGTGTAATTCCTGTTGAGTTGGGTGATATGTCTAATCTTCAGGTACTGAGTCTTCAATCCAATAACCTAGTTGGAGAAATCCCAAGTAATATCTCACAGTTGAACAGATTGCAGAAACTCAATTTCAGCTCGAATTCGTTGACTGGTTCCATACCAAGTTCATTATCAAGTTTGAGAAGTCTCACAAACTTGAATTTGCAGGGGAATAAACTAAGCGGTCGAATTCCGGTTGACATTAGTAACTTAAATGTGCTGTTAGAACTCCAACTTGGAGGGAACCAACTCAGTGGGCCTATTCCTGATATGCCATTGAGTTTACAGATTGCTTTGAATCTGAGTCACAATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337362" ref_strand="+" ref_description="SGN-E337362 [cTOE-18-O16]">
      <seq>caaaaacaaataaaaaatgaccttaagggatgctcccaatatagttattactatattcttgtctttttctcttcaaattgtgttaatccactggaccaaccttacaaatattgagcccttaaccgtgaaagagctcattaataaatatactggtgatccttttgtatagaatggaactgataaagcttcaaccccatgttcttggaaaggggtttcatgtaattctgataattcttcccttaccaaagttaccttttcattgttctctatttctagctctgaacttttgccttttatctatcaaattggcactttggagtctcttgatgtttccctgaactttttgagctctatcccaaatgagttcatcactgtttgtgggggaattagtgggttgaaattgatgaactttagtgggaatagattggagggttttttgcctactttcactggttttggaaagttggagtctttagacttttcttataataacttgaagggaaaagttgacttgcagttgaatggattgaattcactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="98064" stop="96926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97764" g_stop="97226" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E337362" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97764" e_stop="97226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAATAAAAAATGACCTTAAGGTATGCTCCCAATATAGTTATTACTATATTCTTGTCTTTTTCTCTTCAAATTGTGTTTTCCCAATTGCCCACAAATCAAATTAATGTCATGAGAAGTGTCTATGATCTGTTTCAGAATGATACTGGTGATTCTTTTGTATGGAATGGAACTGATAAAGCTTCAACCCCATGTTCTTGGAAAGGGGTTTCATGTAATTCTGATAATTCTTCCCTTACCAAAGTTACCTTTTCATTGTTCTCTATTTCTAGCTCTGAATTCTTGCCTTTTATTTGTCAAATTGGTACTTTGGAGTCTCTTGATGTTTCCCTGAACTTTTTGAGCTCTATCCCAAATGAGTTCATCACTGTTTGTGGGGGAATTAGTGGGTTGAAATTGTTGAACTTTAGTGGGAATAGATTGGAGGGTTTTTTGCCTACTTTCACTGGTTTTGGAAAGTTGGAGTCTTTAGACTTTTCTTATAATAGCTTGAAGGGAAAAGTTGACTTGCAGTTGAATGGATTGAATTCACTCA</genome_strand>
        <mrna_strand>CAAAAACAAATAAAAAATGACCTTAAGGGATGCTCCCAATATAGTTATTACTATATTCTTGTCTTTTTCTCTTCAAATTGTGTTAATCCACTGGACCAACCTTACAAATATTGAGCCCTTAACCGTGAAAGAGCTCATTAATAAATATACTGGTGATCCTTTTGTATAGAATGGAACTGATAAAGCTTCAACCCCATGTTCTTGGAAAGGGGTTTCATGTAATTCTGATAATTCTTCCCTTACCAAAGTTACCTTTTCATTGTTCTCTATTTCTAGCTCTGAACTTTTGCCTTTTATCTATCAAATTGGCACTTTGGAGTCTCTTGATGTTTCCCTGAACTTTTTGAGCTCTATCCCAAATGAGTTCATCACTGTTTGTGGGGGAATTAGTGGGTTGAAATTGATGAACTTTAGTGGGAATAGATTGGAGGGTTTTTTGCCTACTTTCACTGGTTTTGGAAAGTTGGAGTCTTTAGACTTTTCTTATAATAACTTGAAGGGAAAAGTTGACTTGCAGTTGAATGGATTGAATTCACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205270" ref_strand="+" ref_description="SGN-E205270 [cLEC-25-L21]">
      <seq>tggacctcagttttaacacattaaatggtacaattcctcaggacctcttattcccaatgaacttgcagtttgttgatctcacttccaataagttagagggacctgttccttcaaacatgtcgataaatctgatcaggttgagattggggcaaaatgctttgagtgggtcatttccatctgcttcttttgaaagccttcaaagtttgacctacttggaactggacaacaaccagttaactggaccaattccttctgaattggggaagtgccaaaagttggcccttttgaacttagctcagaataagctgagtggtgtaattcctgttgagttgggtgatatgtctaatcttcaggtactgagtcttcaatccaataacctagttggagaaatcccaagtaatatctcacagttgaacagattgcagaaactcaatttcagctcgaattcgttgactggttccataccaagttcattatcaagtttgagaagtctcacaaacttgaatttgcaggggaataaactaagcggtcgaattccggttgacattagtaacttaaatgtgctgttagaactccaacttggagggaaccaactcagtgggcctattcctgatatgccattgagtttacagattgctttgaatctgagtcacaatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="+" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="107862" stop="109122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108162" g_stop="108822" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="+" ref_id="SGN-E205270" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108162" e_stop="108822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACCTCAGTTTTAACACATTAAATGGTACAATTCCTCAGGACCTCTTATTCCCAATGAACTTGCAGTTTGTTGATCTCACTTCCAATAAGTTTGAGGGACCTGTTCCTTCAAACATGTCGATAAATTTGATCAGGTTGAGATTGGGGCAAAATGCTTTGAATGGGTCATTTCCATCTGCTTCTTTTGAAAGCCTTCAAAGTTTGACCTACTTGGAACTGGACAACAACCAGTTAACAGGACCAATTCCTTCCGAATTGAGAAAGTGCCAAAAGTTGGCCCTTTTGAACTTAGCTCAGAATAAGCTGAGTGGTGTTATTCCTGTTGAGTTGGTTGATATGTCTAATCTTCAGGTACTGAGTCTTCAATCCAATAACCTAGTTGGAGAAATCCCAAGTAATATCTCACACTTGAACAGATTGCAGAGACTCAATTTCAGCTCGAATTCGTTGACTGGTTCCATACCAAGTTCATTATCAAGTTTGAGAAATCTCACAAACTTGAATTTGCGGGGGAATAAACTAAGTGGTCGAATTCCGGTTGACATTAGTAACTTAAATGTGCTGTTAGAACTCCAACTTGGAGGGAACCAACTCGGTGGGCCTATTCCTGATATGCCATTGAGTTTACAGATTGCTTTGAATCTGAGTCACAATCTTTT</genome_strand>
        <mrna_strand>TGGACCTCAGTTTTAACACATTAAATGGTACAATTCCTCAGGACCTCTTATTCCCAATGAACTTGCAGTTTGTTGATCTCACTTCCAATAAGTTAGAGGGACCTGTTCCTTCAAACATGTCGATAAATCTGATCAGGTTGAGATTGGGGCAAAATGCTTTGAGTGGGTCATTTCCATCTGCTTCTTTTGAAAGCCTTCAAAGTTTGACCTACTTGGAACTGGACAACAACCAGTTAACTGGACCAATTCCTTCTGAATTGGGGAAGTGCCAAAAGTTGGCCCTTTTGAACTTAGCTCAGAATAAGCTGAGTGGTGTAATTCCTGTTGAGTTGGGTGATATGTCTAATCTTCAGGTACTGAGTCTTCAATCCAATAACCTAGTTGGAGAAATCCCAAGTAATATCTCACAGTTGAACAGATTGCAGAAACTCAATTTCAGCTCGAATTCGTTGACTGGTTCCATACCAAGTTCATTATCAAGTTTGAGAAGTCTCACAAACTTGAATTTGCAGGGGAATAAACTAAGCGGTCGAATTCCGGTTGACATTAGTAACTTAAATGTGCTGTTAGAACTCCAACTTGGAGGGAACCAACTCAGTGGGCCTATTCCTGATATGCCATTGAGTTTACAGATTGCTTTGAATCTGAGTCACAATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747254" ref_strand="+" ref_description="SGN-E747254 [GI|12002864]">
      <seq>gttcccaatggacgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttagaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggatgcaatattccactatgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttccagttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcggatggtatcattctcatcctggctatggatgctggctctctggcattgatgtaactacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataagcctccagatgaccctatctcagagtaccagaccattcctttgaacaaaattgaagacttcggagtacattgcaagcagtattattcattggatattacctatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttgaaaatggagactatgttgctggacagatatctgatcttgctgaaaagatggagcaagctgaaaatcacctgtcccattcacgttttgggcacttagtggcagcccctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagttcatggcttaatgtcgcaggttattaaagacattcttttcaatagcgtttgtaagtcaggcaagtcgcagactgaaccctctgatccagagccgatggtcgaaacctgaatagtttcatcctattactccagatttagatttgtctctaggtttctttttgcagttaactaaacatacagctttgagtcattatatgtaggtccgaagggtgaaagtttaagatggccacccctgatataaattatcattgctgtttaatgttttgaagattttgccaaatctttcactagttcttttccttgtcttcttttcttttgttatttagagaagtctgtaaatcatgaaccatccttttatatgaatggtacaacctctatcttgtattagtacgacattttctattttagaaattattaatagattcagtaactttactatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122662" stop="99776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122362" g_stop="121933" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="712" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="860" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.435" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="943" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="944" r_stop="1021" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="117528" g_stop="117103" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1022" r_stop="1444" r_length="423" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="117102" i_stop="116936" i_length="167">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.785" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="116935" g_stop="116918" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1445" r_stop="1462" r_length="18" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E747254" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1465</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122362" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117103"/>
          <exon e_start="116935" e_stop="116918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATCGACATTTTCTATTTTAGAAATTATTAATAGATTCAGTAACTTTACTATTTTGCACTTTGTTCATATTGATTGATCTCTTGAAAAAAGAAATTGTTAGATCTTTAAAATTTGTTTAAACTTTCTAAATGCTACATTAATCGTACGGATAAAATAGGGAAAATTTAATTAATTTTATTCAATTTAATAAGTGATTAAGTAATATGATACAAATATTTTAGTAAGATGCAGGAACAGAA</genome_strand>
        <mrna_strand>GTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGAAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGATGGAGCAAGCTGAAAATCACCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG..............................................................................................GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTACTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTC-ATTATATGTAGGTCCGAA-GGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAG-TCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGTACGACATTTTCTATTTTAGAAATTATTAATAGATTCAGTAACTTTACTATTTA.......................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745454" ref_strand="+" ref_description="SGN-E745454 [GI|47105624]">
      <seq>ggaagttcagttcccaatggacgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttagaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggatgcaatattccactacgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttccagttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcggatggtatcattctcatcctggctatggatgctggctctctggcattgatgtaactacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataagcctccagatgaccctatctcagagtaccagaccattcctttgaacaaaattgaagacttcggagtacattgcaagcagtattattcattggatattacctatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcaagctgaaaatcagctgtcccattcacgttttgggcccttagtggcagcctctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagttcatggcttaatgtcgcaggttattaaagacattcttttcaatagcgtttgtaagtcaggcaagtcgcagactgaaccctctgatccagagccgatggtcgaaatctgaatagtttcatcctattagtccagatttagatttgtctctaggtttctttttgcagttaactaaacatacagctttgagtctattatatgtaggtcccaaggggtgaaagtttaagatggccacccctgatataaattatcattgctgtttaatgttttgaagattttgccaaatctttcaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122670" stop="99779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122371" g_stop="121933" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="721" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="869" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="870" r_stop="952" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="953" r_stop="1030" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="117528" g_stop="117256" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1031" r_stop="1303" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="117255" i_stop="116936" i_length="320">
            <donor d_prob="0.355" d_score="0.98"/>
            <acceptor a_prob="0.785" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="116935" g_stop="116920" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1304" r_stop="1319" r_length="16" r_score="0.438"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E745454" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122371" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117256"/>
          <exon e_start="116935" e_stop="116920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATCGACATTTTCTATTTTAGAAATTATTAATAGATTCAGTAACTTTACTATTTTGCACTTTGTTCATATTGATTGATCTCTTGAAAAAAGAAATTGTTAGATCTTTAAAATTTGTTTAAACTTTCTAAATGCTACATTAATCGTACGGATAAAATAGGGAAAATTTAATTAATTTTATTCAATTTAATAAGTGATTAAGTAATATGATACAAATATTTTAGTAAGATGCAGGAACAG</genome_strand>
        <mrna_strand>GGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTACGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCCCTTAGTGGCAGCCTCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG..............................................................................................GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAATCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACCA................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215966" ref_strand="+" ref_description="SGN-E215966 [cLEL-13-E13](-)">
      <seq>tctttttgcagttaactaaacatacagctttgagtctattatatgtaggtcccaaggggtgaaagtttaagatggccacccctgatataaattatcattgctgtttaatgttttgaagattttgccaaatctttcactagttcttttccttgtcttcttttcttttggtatttagagaagttctgtaaatcatgaaccatccttttatatgaatggtacaacctctatcttgtattagatggacaatttctattttagaaattattaatagattcagtaactttactatttaaaaaaaaaaaaaaaaaaaaaaaaatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="117694" stop="42740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117394" g_stop="117065" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E215966" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117394" e_stop="117065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATCGACATTTTCTATTTTAGAAATTATTAATAGATTCAGTAACTTTACTATTTTGCACTTTGTTCATATTGATTGATCTCTTGAAAAAAGAA</genome_strand>
        <mrna_strand>TCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGGTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATGGACAATTTCTATTTTAGAAATTATTAATAGATTCAGTAACTTTACTATTTAAAAAAAAAAAAAAAAAAAAAAAAATATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375657" ref_strand="+" ref_description="SGN-E375657 [TUS-35-M3](-)">
      <seq>ttacctatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcaagctgaaaatcagctgtcccattcacgttttgggcacttagtggcagcccctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagttcatggcttaatgtcgcaggttattaaagacattcttttcaatagcgtttgtaagtcaggcaagtcgcagactgaaccctctgatccagagccgatggtcgaaacctgaatagtttcatcctattagtccagatttagatttgtctctaggtttctttttgcagttaactaaacatacagctttgagtctattatatgtaggtcccaaggggtgaaagtttaagatggccacccctgatataaattatcattgctgtttaatgttttgaagattttgccaaatctttcactagttcttttccttgtcttcttttcttttgttatttagagaagttctgtaaatcatgaaccatccttttatatgaatggtacaacctctatcttgtattagatcgacattttctattttagaaattattaatagattcagtaactttactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="121107" stop="116807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120807" g_stop="120676" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="215" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="293" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117528" g_stop="117098" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="724" r_length="431" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E375657" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120807" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATCGACATTTTCTATTTTAGAAATTATTAATAGATTCAGTAACTTTACTATTTTGCACT</genome_strand>
        <mrna_strand>TTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG..............................................................................................GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATCGACATTTTCTATTTTAGAAATTATTAATAGATTCAGTAACTTTACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392570" ref_strand="+" ref_description="SGN-E392570 [TUS-35-O2](-)">
      <seq>ggcacttagtggcagcccctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtcctccccctcctgtcgagcaagttcatggcttaatgtcgcaggttattaaagacattcttttcaatagcgtttgtaagtcaggcaagtcgcagactgaaccctctgatccagagccgatggtcgaaacctgaatagtttcatcctattagtccagatttagatttgtctctaggtttctttttgcagttaactaaacatacagctttgagtctattatatgtaggtcccaaggggtgaaagtttaagatggccacccctgatataaattatcattgctgtttaatgttttgaagattttgccaaatctttcactagttcttttccttgtcttcttttcttttgttatttagagaagttctgtaaatcatgaaccatccttttatatgaatggtacaacctctatcttgtattagatcgacattttctattttagaaattattaatagattcagtaactttactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="120806" stop="116807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120506" g_stop="120472" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="113" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117528" g_stop="117108" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="534" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="545"/>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E392570" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120506" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATCGACATTTTCTATTTTAGAAATTATTAATAGATTCAGTAACTTTACT</genome_strand>
        <mrna_strand>GGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTCCTCCCCCTCCTGTCGAGCAAGTTCATGGCTTAATGTCGCAG..............................................................................................GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATCGACATTTTCTATTTTAGAAATTATTAATAGATTCAGTAACTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692032" ref_strand="+" ref_description="SGN-E692032 [LH_Ea07K14]">
      <seq>ccgtgttttgaacaaaattgaagacttcggagtacattgcaagcagtattattcattggatattacatatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcaagctgaaaatcagctgtcccattcacgttttgggcccttagtggcagcccctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagttcatggcttaatgtcgcaggttattaaagacattcttttcaatagcgtttgtaagtcaggcaagtcgcagactgaaccctctgatccagagcccatggtcgaaacctgaaaagtttcatcctattagtccagatttagatctgtctctaggtttctttttgcagttaactaaacatacagctttgagtctattatatgtaggtcccaaggggtgaaagtttaagatggccaccccagatataaattatcattgctgtttaatgttttgaagattttgccaaatctttcactagttcttttccttgtcttcctttcttttgttacttagagaagttctgtaaattatgaaccatccttttatatgaatggtactacctctatcttgtattagatcgacattttctattttagaaattattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="121275" stop="116827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120981" g_stop="120936" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="0.91"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="194" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="277" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="355" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117528" g_stop="117127" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="757" r_length="402" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E692032" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120981" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATCGACATTTTCTATTTTAGAAATTATTAA</genome_strand>
        <mrna_strand>CCGTGTTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACATATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCCCTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG..............................................................................................GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCCATGGTCGAAACCTGAAAAGTTTCATCCTATTAGTCCAGATTTAGATCTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCAGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCCTTTCTTTTGTTACTTAGAGAAGTTCTGTAAATTATGAACCATCCTTTTATATGAATGGTACTACCTCTATCTTGTATTAGATCGACATTTTCTATTTTAGAAATTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538697" ref_strand="+" ref_description="SGN-E538697 [TUS-58-B6](-)">
      <seq>ttgaacaaaattgaagacttcggagtacattgcaagcagtatatttcattggatattacntatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcaagctgaaaatcagctgtcccattcacgttttgggcacttagtggcagcccctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagttcatggcttaatgtcgcaggttattaaagacattcttttcaatagcgtttgtaagtcaggcaagtcgcagactgaaccctctgatccagagccgatggtcgaaacctgaatagtttcatcctattagtccagatttagatttgtctctaggtttctttttgcagttaactaaacatacagctttgagtctattatatgtaggtcccaaggggtgaaagtttaagatggccacccctgatataaattatcattgctgtttaatgttttgaagattttgccaaatctttcactagttcttttccttgtcttcttttcttttgttatttagagaagttctgtaaatcatgaaccatccttttatatgaatggtacaacctctatcttgtattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="121274" stop="116856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120974" g_stop="120936" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.914" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="187" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="270" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="348" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117528" g_stop="117146" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="731" r_length="383" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E538697" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120974" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATCGACATTTT</genome_strand>
        <mrna_strand>TTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATATTTCATTGGATATTACNTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG..............................................................................................GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551710" ref_strand="+" ref_description="SGN-E551710 [cTSB-1-J20]">
      <seq>aaaagttggagcaagctgaaaatcagctgtcccattcacgttttgggcccttagtggcagcctctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagttcatggcttaatgtcgcaggttattaaagacattcttttcaatagcgtttgtaagtcaggcaagtcgcagactgaaccctctgatccagagccgatggtcgaaatctgaatagtttcatcctattagtccagatttagatttgtctctaggtttctttttgcagttaactaaacatacagctttgagtctattatatgtaggtcccaaggggtgaaagtttaagatggccacccctgatataaattatcattgctgtttaatgttttgaagattttgccaaatctttcactagttcttttccttgtcttcttttcttttgttatttagagaagttctgtaaatcatgaaccatccttttatatgaatggtactacctctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="120851" stop="99776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120551" g_stop="120472" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="158" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117528" g_stop="117148" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="539" r_length="381" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E551710" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120551" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATCGACATT</genome_strand>
        <mrna_strand>AAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCCCTTAGTGGCAGCCTCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG..............................................................................................GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAATCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACTACCTCTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375658" ref_strand="+" ref_description="SGN-E375658 [TUS-35-M3]">
      <seq>tttgaacaaaattgaagacttcggagtacattgcaagcagtattattcattggatattacctatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcaagctgaaaatcagctgtcccattcacgttttgggcacttagtggcagcccctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagttcatggcttaatgtcgcaggttattaaagacattcttttcaatagcgtttgtaagtcaggcaagtcgcagactgaaccctctgatccagagccgatggtcgaaacctgaatagtttcatcctattagtccagatttagatttgtctctaggtttctttttgcagttaactaaacatacagctttgagtctattatatgtaggtcccaaggggtgaaagtttaagatggccacccctgatataaattatcattgctgtttaatgttttgaagattttgccaaatctttcactagttcttttccttgtcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="121275" stop="116935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120975" g_stop="120936" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="188" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="271" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="349" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117528" g_stop="117235" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="643" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E375658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120975" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTT</genome_strand>
        <mrna_strand>TTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG..............................................................................................GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615901" ref_strand="+" ref_description="SGN-E615901 [65705]">
      <seq>gcctttcgaacatatcctgaaggatataagcctccagatgaccctatctcagagtaccagaccattcctttgaacaaaatcgaagactttggagtacattgcaagcagtattattcattggatgttacgtattttaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactacgttgctggacagatatctgatcttgctgaaaagttggagcaagctgaaaatcaactgccccattcacgttttgggcccttagtggcagcccctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagttcatggcttaatgtctcaggttattaaagacattcttttcaatagcgtttgtaagtcaggcaagtcacagacggaaccctctgatccagagcccatgatcgaaacctgaaaagtttcatcgtattagtccagatgtagatctgtttctaggtttctttttgcagttaactaaacatacagctttgactctattatatgtaggtccaaaggggtgaaagttttaagatggccaccccagatataaattatcattgctgtttaatgttttgaacgattttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="121343" stop="116969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121043" g_stop="120936" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="0.96"/>
            <acceptor a_prob="0.914" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="256" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.435" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="339" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="417" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117528" g_stop="117269" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="679" r_length="262" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E615901" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121043" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAG-TTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAA-GATTTTGCC</genome_strand>
        <mrna_strand>GCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATCGAAGACTTTGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATGTTACGTATTTTAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTACGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCAAGCTGAAAATCAACTGCCCCATTCACGTTTTGGGCCCTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCTCAG..............................................................................................GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCACAGACGGAACCCTCTGATCCAGAGCCCATGATCGAAACCTGAAAAGTTTCATCGTATTAGTCCAGATGTAGATCTGTTTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGACTCTATTATATGTAGGTCCAAAGGGGTGAAAGTTTTAAGATGGCCACCCCAGATATAAATTATCATTGCTGTTTAATGTTTTGAACGATTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392330" ref_strand="+" ref_description="SGN-E392330 [TUS-35-O2]">
      <seq>ctttgaacaaaattgaagacttcggagtacattgcaagcagtattattcattggatattacctatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcaagctgaaaatcagctgtcccattcacgttttgggcacttagtggcagcccctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagttcatggcttaatgtcgcaggttattaaagacattcttttcaatagcgtttgtaagtcaggcaagtcgcagactgaaccctctgatccagagccgatggtcgaaacctgaatagtttcatcctattagtccagatttagatttgtctctaggtttctttttgcagttaactaaacatacagctttgagtctattatatgtaggtcccaaggggtgaaagtttaagatggccacccctgatataaattaacattgctgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="121276" stop="116988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120976" g_stop="120936" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="189" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="272" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="350" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117528" g_stop="117288" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="591" r_length="241" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E392330" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120976" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTA</genome_strand>
        <mrna_strand>CTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG..............................................................................................GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTAACATTGCTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707665" ref_strand="+" ref_description="SGN-E707665 [FA33CE12]">
      <seq>cgctttgctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcggatggtatcattctcatcctggctatggatgctggctctctggcattgatgtaactacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataagcctccagatgaccctatctcagagtaccagaccattcctttgaacaaaattgaagacttcggagtacattgcaagcagtattattcattggatattacctatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcaagctgaaaatcagctgtcccattcacgttttgggcccttagtggcagcctctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagttcatggcttaatgtcgcaggttattaaagacattcttttcaatagcgtttgtaagtcaggcaagtcgcagactgaaccctctgatccagagccgatggtcgaaatctgaatagtttcatcctattagtccagatttagatttgtctctaggtttctttttgcagttaactaaacatacagctttgagtctattatatgtaggtcccaaggggtgaaaatttaagatggccacccctgatataaattatcattgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122280" stop="116991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121987" g_stop="121933" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="336" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="484" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="567" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="645" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="117528" g_stop="117291" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="883" r_length="238" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E707665" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121987" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGT</genome_strand>
        <mrna_strand>CGCTTT-GCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCCCTTAGTGGCAGCCTCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG..............................................................................................GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAATCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAATTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256612" ref_strand="+" ref_description="SGN-E256612 [cLEG-38-B24]">
      <seq>tttgaacaaaattgaagacttcggagtacattgcaagcagtattattcattggatattacctatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcaagctgaaaatcagctgtcccattcacgttttgggcacttagtggcagcccctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagttcatggcttaatgtcgcaggttattaaagacattcttttcaatagcgtttgtaagtcaagcaagtcgcagactgaaccctctgatccagagccgatggtcgaaacctgaatagtttcatcctattagtccagatttagatttgtctctaagtttctttttgcagttaactaaacatacagctttgagtctattatatgtaggtcccaaggggtgaaagtttaagatggccacccctgatataaattatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="121275" stop="116998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120975" g_stop="120936" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="188" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="271" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="349" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117528" g_stop="117298" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="580" r_length="231" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E256612" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120975" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCA</genome_strand>
        <mrna_strand>TTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG..............................................................................................GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAAGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAAGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256997" ref_strand="+" ref_description="SGN-E256997 [cLEG-44-N4]">
      <seq>tttgaacaaaattgaagacttcggagtaccattgcaagcagtattattcattggatattacctatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcaagctgaaaatcagctgtcccattcacgttttgggcacttagtggcagcccctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagttcatggcttaatgtcgcaggttattaaagacattcttttcaatagcgtttgtaagtcaggcaagtcgcagactgaaccctctgatccagagccgatggtcgaaacctgaatagtttcatcctattagtccagatttagatttgtctctaggtttctttttgcagttaactaaacatacagctttgagtctattatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="121275" stop="117051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120975" g_stop="120936" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="0.95"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="189" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="272" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="350" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117528" g_stop="117351" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="528" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E256997" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120975" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACAAAATTGAAGACTTCGGAGTA-CATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATAT</genome_strand>
        <mrna_strand>TTTGAACAAAATTGAAGACTTCGGAGTACCATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG..............................................................................................GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254682" ref_strand="+" ref_description="SGN-E254682 [cLEG-29-F15]">
      <seq>tgaagacttctgagtccattgcaagcggtattattcattggatattacctatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcaagctgaaaatcagctgtcccattcacgttttgggcacttagtggcagcccctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagttcatggcttaatgtcgcaggttattaaagacattcttttcaatagcgtttgtaagtcaggcaagtcgcagactgaaccctctgatccagagccgatggtcgaaacctgaatagtttcatcctattagtccagatttagatttgtctctaggtttctttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="121127" stop="117087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120963" g_stop="120936" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="176" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="259" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="337" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117528" g_stop="117387" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="479" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E254682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120963" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTG</genome_strand>
        <mrna_strand>TGAAGACTTCTGAGTCCATTGCAAGCGG................................................................................................................TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG..............................................................................................GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272832" ref_strand="+" ref_description="SGN-E272832 [cLEM-25-O17]">
      <seq>atgaccccatctcggagtaccagaccattcctttgaacaaaatcgaagactttggagtacattgcaagcagtattattcattggatattacatattttaagtcttctctcgattgtcgtctcttggacctactatggaacaagtattgggtgaacacactttcatcatctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcatgctgaaaatcagctgtctaattcacgttatgcatccttaatggcaccccctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgaacaagttcatggcttaatgtcgcaggtaattaaagacattcttttcaatagtgttggtaagtcaagcaagtcacagacggaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="121306" stop="117170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121006" g_stop="120936" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="0.96"/>
            <acceptor a_prob="0.914" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="219" r_length="148" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="302" r_length="83" r_score="0.880"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="0.82"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="380" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117528" g_stop="117469" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="440" r_length="60" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E272832" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121006" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCC</genome_strand>
        <mrna_strand>ATGACCCCATCTCGGAGTACCAGACCATTCCTTTGAACAAAATCGAAGACTTTGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACATATTTTAAGTCTTCTCTCGATTGTCGTCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCATCATCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCATGCTGAAAATCAGCTGTCTAATTCACGTTATGCATCCTTAATGGCACCCCCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAACAAGTTCATGGCTTAATGTCGCAG..............................................................................................GTAATTAAAGACATTCTTTTCAATAGTGTTGGTAAGTCAAGCAAGTCACAGACGGAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616427" ref_strand="+" ref_description="SGN-E616427 [66236]">
      <seq>caagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcgggtggtaccattctcatcctggctatggatgctggctctctggcattgatgtatctacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataagcctccagatgaccctatctcagagtaccagaccattcctttgaacaaaatcgaagactttggagtacattgcaagcagtattattcattggatgttacgtattttaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcaagctgaaaatcaactgccccattcacgttttgggcccttagtggcagcccctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagtcatgggttaatgtcgcaggttattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122283" stop="117317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121983" g_stop="121933" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="333" r_length="282" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="0.96"/>
            <acceptor a_prob="0.914" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="481" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="564" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="641" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="117528" g_stop="117521" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="649" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E616427" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121983" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAA</genome_strand>
        <mrna_strand>CAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGGTGGTACCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTATCTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATCGAAGACTTTGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATGTTACGTATTTTAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCAAGCTGAAAATCAACTGCCCCATTCACGTTTTGGGCCCTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAG-TCATGGGTTAATGTCGCAG..............................................................................................GTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254681" ref_strand="+" ref_description="SGN-E254681 [cLEG-29-F13]">
      <seq>aattgactacttctgagtacattgcaagcagtattattcattggatattacctatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcaagctgaaaatcagctgtcccattcacgttttgggcacttagtggcagcccctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagttcatggcttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="121266" stop="117330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120966" g_stop="120936" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="179" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="262" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117700" g_stop="117630" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="333" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E254681" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120966" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAAT</genome_strand>
        <mrna_strand>AATTGACTACTTCTGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553477" ref_strand="+" ref_description="SGN-E553477 [cTSC-1-D6]">
      <seq>cccaatggacgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttagaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggattcaatattccactacgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttccagttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcggatggtatcattctcatcctggctatggatgctggctctctggcattgatgtaactacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataagcctccagatgaccctatctcagagtaccagaccattcctttgaacaaaattgaagacttcggagtacattgcaagcagtattattcattggatattacctatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgnaaagttggaggcagctgaaaatcagctgtcccattcacgttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122659" stop="120206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122359" g_stop="121933" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="709" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="857" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120554" g_stop="120506" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="906" r_length="49" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E553477" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122359" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGG</genome_strand>
        <mrna_strand>CCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATTCAATATTCCACTACGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGNAAAGTTGGAGGCAGCTGAAAATCAGCTGTCCCATTCACGTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708938" ref_strand="+" ref_description="SGN-E708938 [FA42AG06]">
      <seq>cgctttgaagttacatggactctctgaattcttacgcatcgtcggcggcgatggcgcagcaaacctgggagttagagaacaacatcgtaacaatcgacgcgccgtcggggtcgaaaccggaaaactccgcgtcggacgctatattccactacgacgatgcggcacagacgaagtttcagcgggagaagccgtgggcgagtgaccctcactacttcaagcgtgtgaagatctctgctcttgctcttctcaagatggttgttcacgcgcgttccggaggtacaattgaggtcatgggactcatgcagggtaagactgacggcgatgccatcattgtaatggacgcttttgccctccccgttgaaggcactgaaactagggttaatgctcaagctgatgcgtatgaatatatggtcgaatattcacagaccaacaagcaggctggtcgtttggaaaatgtggtcgggtggtaccattcccatcctggttatggatgctggctctctggcattgatgtatctacccaaatgctcaaccagcaatatcaggaaccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataaacctccagatgaccccatctcggagtaccagaccattcctttgaacaaaatcgaagactttggagtacattgcaagcagtattattcattggatattacatattttaagtcttctctcgattgtcgtctcttggacctactatgggacaagtattgggtgaacacactttcatcatctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcatgctgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122663" stop="120229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122371" g_stop="121933" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="719" r_length="282" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="0.96"/>
            <acceptor a_prob="0.914" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="867" r_length="148" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120554" g_stop="120529" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="868" r_stop="893" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E708938" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122371" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAAT</genome_strand>
        <mrna_strand>CGCTTTGAAGTT-AC-ATGGACTCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAGCAAACCTGGGAGTTAGAGAACAACATCGTAACAATCGACGCGCCGTCGGGGTCGAAACCGGAAAACTCCGCGTCGGACGCTATATTCCACTACGACGATGCGGCACAGACGAAGTTTCAGCGGGAGAAGCCGTGGGCGAGTGACCCTCACTACTTCAAGCGTGTGAAGATCTCTGCTCTTGCTCTTCTCAAGATGGTTGTTCACGCGCGTTCCGGAGGTACAATTGAGGTCATGGGACTCATGCAGGGTAAGACTGACGGCGATGCCATCATTGTAATGGACGCTTTTGCCCTCCCCGTTGAAGGCACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATATATGGTCGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGTTTGGAAAATGTGGTCGGGTGGTACCATTCCCATCCTGGTTATGGATGCTGGCTCTCTGGCATTGATGTATCTACCCAAATGCTCAACCAGCAATATCAGGAACCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAACCTCCAGATGACCCCATCTCGGAGTACCAGACCATTCCTTTGAACAAAATCGAAGACTTTGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACATATTTTAAGTCTTCTCTCGATTGTCGTCTCTTGGACCTACTATGGGACAAGTATTGGGTGAACACACTTTCATCATCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCATGCTGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554144" ref_strand="+" ref_description="SGN-E554144 [cTSC-3-F7]">
      <seq>cccaatggacgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttagaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggattcaatattccactacgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttccagttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcggatggtatcattctcatcctggctatggatgctggctctctggcattgatgtaactacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataagcctccagatgaccctatctcagagtaccagaccattcctttgaacaaaattgaagacttcggagtacattgcaagcagtattattcattggatattacctatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactatgttgctggacagaatatctgatcttgctgaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122659" stop="120370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122359" g_stop="121933" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="709" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="858" r_length="149" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.435" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120554" g_stop="120547" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="859" r_stop="866" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E554144" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122359" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAG-ATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAG</genome_strand>
        <mrna_strand>CCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATTCAATATTCCACTACGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGAATATCTGATCTTG.........................................................................................................................CTGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705904" ref_strand="+" ref_description="SGN-E705904 [FA28BH05]">
      <seq>gaagttacaatggactctctgaattcttacgcatcgtcggcggcgatggcgcagcaaacctgggagttagagaacaacatcgtaacaatcgacgcgccgtcggggtcgaaaccggaaaactccgcgtcggacgctatattccactacgacgatgcggcacagacgaagtttcagcgggagaagccgtgggcgagtgaccctcactacttcaagcgtgtgaagatctctgctcttgctcttctcaagatggttgttcacgcgcgttccggaggtacaattgaggtcatgggactcatgcagggtaagactgacggcgatgccatcattgtaatggacgcttttgccctccccgttgaaggcactgaaactagggttaatgctcaagctgatgcgtatgaatatatggtcgaatattcacagaccaacaagcaggctggtcgtttggaaaatgtggtcgggtggtaccattcccatcctggttatggatgctggctctctggcattgatgtatctacccaaatgctcaaccagcaatatcaggaaccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataaacctccagatgaccccatctcggagtaccagaccattcctttgaacaaaatcgaagactttggagtacattgcaagcagtattattcattggatattacatattttaagtcttctctcgattgtcgtctcttggacctactatgggacaagtattgggtgaacacactttcatcatctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122663" stop="120372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122365" g_stop="121933" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="714" r_length="282" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="0.96"/>
            <acceptor a_prob="0.914" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="862" r_length="148" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120554" g_stop="120549" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="863" r_stop="868" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E705904" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122365" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAA</genome_strand>
        <mrna_strand>GAAGTTAC-AATGGACTCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAGCAAACCTGGGAGTTAGAGAACAACATCGTAACAATCGACGCGCCGTCGGGGTCGAAACCGGAAAACTCCGCGTCGGACGCTATATTCCACTACGACGATGCGGCACAGACGAAGTTTCAGCGGGAGAAGCCGTGGGCGAGTGACCCTCACTACTTCAAGCGTGTGAAGATCTCTGCTCTTGCTCTTCTCAAGATGGTTGTTCACGCGCGTTCCGGAGGTACAATTGAGGTCATGGGACTCATGCAGGGTAAGACTGACGGCGATGCCATCATTGTAATGGACGCTTTTGCCCTCCCCGTTGAAGGCACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATATATGGTCGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGTTTGGAAAATGTGGTCGGGTGGTACCATTCCCATCCTGGTTATGGATGCTGGCTCTCTGGCATTGATGTATCTACCCAAATGCTCAACCAGCAATATCAGGAACCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAACCTCCAGATGACCCCATCTCGGAGTACCAGACCATTCCTTTGAACAAAATCGAAGACTTTGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACATATTTTAAGTCTTCTCTCGATTGTCGTCTCTTGGACCTACTATGGGACAAGTATTGGGTGAACACACTTTCATCATCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449954" ref_strand="+" ref_description="SGN-E449954 [cSTS-8-A5]">
      <seq>atgccatattccactacgacgatgcggcacagacgaagtttcagcgggagaagccgtgggcgagtgaccctcactatttcaagcgtgtgaagatctctgctcttgctcttctcaagatggttgttcacgcgcgttccggaggtacaattgaggtcatgggactcatgcagggtaagactgacggcgatgcaattattgttatggacgcttttgccctccccgttgaaggcactgaaactagggttaatgctcaagctgatgcgtatgaatatatggtcgaatattcacagaccaacaagcaggctggtcgtttggaaaatgtggtcgggtggtaccattcccatcctggttatggatgctggctctctggtattgatgtatctacacaaatgcttaatcagcaatatcaagagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataagcctccagatgaccccatctcggagtaccagaccattcctttgaacaaaattgaagactttggagtacattgcaagcagtattattcattggatattacatattttaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcatctcctttgcttggaaatggagactatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122534" stop="120395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122234" g_stop="121933" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="584" r_length="282" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="0.98"/>
            <acceptor a_prob="0.914" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120695" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="713" r_length="129" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E449954" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122234" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCT</genome_strand>
        <mrna_strand>ATGCCATATTCCACTACGACGATGCGGCACAGACGAAGTTTCAGCGGGAGAAGCCGTGGGCGAGTGACCCTCACTATTTCAAGCGTGTGAAGATCTCTGCTCTTGCTCTTCTCAAGATGGTTGTTCACGCGCGTTCCGGAGGTACAATTGAGGTCATGGGACTCATGCAGGGTAAGACTGACGGCGATGCAATTATTGTTATGGACGCTTTTGCCCTCCCCGTTGAAGGCACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATATATGGTCGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGTTTGGAAAATGTGGTCGGGTGGTACCATTCCCATCCTGGTTATGGATGCTGGCTCTCTGGTATTGATGTATCTACACAAATGCTTAATCAGCAATATCAAGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCCATCTCGGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTTGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACATATTTTAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCATCTCCTTTGCTTGGAAATGGAGACTATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720611" ref_strand="+" ref_description="SGN-E720611 [FC11BC03]">
      <seq>aatcggccgaattggcttcttccccgaagttcagttcccaatggacgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttagaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggatgcaatattccactacgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttccagttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcggatggtatcattctcatcctggctatggatgctggctctctggcattgatgtaactacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataagcctccagatgaccctatctcagagtaccagaccattcctttgaacaaaattgaagacttcggagtacattgcaagcagtattattcattggatattacctatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122690" stop="120417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122395" g_stop="121933" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="745" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120717" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="852" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E720611" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122395" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTCTGCAATTGCTTCTTCCCCGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGCTTCTTCCCCGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTACGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554458" ref_strand="+" ref_description="SGN-E554458 [cTSC-4-F7]">
      <seq>cccaatggacgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttagaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggattcaatattccactacgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagggcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttccagttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcggatggtatcattctcatcctggctatggatgctggctctctggcattgatgtaactacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataagcctccagatgaccctatctcagagtaccagaccattcctttgaacaaaattgaagacttcggagtacattgcaagcagtattattcattggatattacctatttcaagtcctctctcgattgccatctcttggacctactatggaacaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122659" stop="120450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122359" g_stop="121933" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="709" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120750" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="783" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E554458" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122359" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTA</genome_strand>
        <mrna_strand>CCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATTCAATATTCCACTACGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGGGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591953" ref_strand="+" ref_description="SGN-E591953 [45676]">
      <seq>gttacaatggacgctctaaattcttacgcatcgtcggcggcgatggcgcagcaaacctgggagttagagaacaacatcgtgacaatagatgcgccgtcggggtcgacaccggaaaactctgcgtcagatgccatattccactacgacgatgcggcacagacgaagtttcagcgggagaagccgtgggcgagtgaccctcactatttcaagcgtgtgaagatctctgctcttgctcttctcaagatggttgttcacgcgcgttccggaggtacaattgaggtcatgggactcatgcagggtaagactgacggcgatgcaattattgttatggacgcttttgccctccccgttgaaggcactgaaactagggttaatgctcaagctgatgcgtatgaatatatggtcgaatattcacagaccaacaagcaggctggtcgtttagaaaatgtggtcgggtggtaccattcccatcctggttacggatgctggctctctggtattgatgtatctacacaaatgcttaatcagcaatatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataagcctccagatgaccccatctcggagtaccagaccatcctttgaacaaaatcgaagactttggagtacattgcaagcagtatattcattggatatcccttattttaagtcctctctcgattgccatctcttgggacctactatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122657" stop="120458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122362" g_stop="121933" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="710" r_length="281" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="0.94"/>
            <acceptor a_prob="0.914" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120758" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="776" r_length="66" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E591953" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122362" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTT-GGACCTACTATGG</genome_strand>
        <mrna_strand>GTT-ACAATGGACGCTCTAAATTCTTACGCATCGTCGGCGGCGATGGCGCAGCAAACCTGGGAGTTAGAGAACAACATCGTGACAATAGATGCGCCGTCGGGGTCGACACCGGAAAACTCTGCGTCAGATGCCATATTCCACTACGACGATGCGGCACAGACGAAGTTTCAGCGGGAGAAGCCGTGGGCGAGTGACCCTCACTATTTCAAGCGTGTGAAGATCTCTGCTCTTGCTCTTCTCAAGATGGTTGTTCACGCGCGTTCCGGAGGTACAATTGAGGTCATGGGACTCATGCAGGGTAAGACTGACGGCGATGCAATTATTGTTATGGACGCTTTTGCCCTCCCCGTTGAAGGCACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATATATGGTCGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGTTTAGAAAATGTGGTCGGGTGGTACCATTCCCATCCTGGTTACGGATGCTGGCTCTCTGGTATTGATGTATCTACACAAATGCTTAATCAGCAATATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCCATCTCGGAGTACCAGACCA-TCCTTTGAACAAAATCGAAGACTTTGGAGTACATTGCAAGCAG................................................................................................................TA-TATTCATTGGATATCCCTTATTTTAAGTCCTCTCTCGATTGCCATCTCTTGGGACCTACTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321590" ref_strand="+" ref_description="SGN-E321590 [cTOB-25-G10]">
      <seq>cgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggatttacaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggatgcaatattccactatgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttccagttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcggatggtatcattctcatcctggctatggatgctggctctctggcattgatgtaactacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctggaggatataagcctccagatgaccctatctcagagtaccagaccattcctttgaacaaaattgaagacttcggagtacattgcaagcagtattattcattggatattaccctatttcagtcctctctcgattgccatctcttgggactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122650" stop="120463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122350" g_stop="121933" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="700" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120763" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="761" r_length="61" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E321590" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122350" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTA-CCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTAC</genome_strand>
        <mrna_strand>CGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGATTTACAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGGAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCCTATTTC-AGTCCTCTCTCGATTGCCATCTCTTGGGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726247" ref_strand="+" ref_description="SGN-E726247 [LA11BA12]">
      <seq>cgtttcaatggacgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttagaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggatgcaatattccactacgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttccagttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcggatggtatcattctcatcctggctatggatgctggctctctggcattgatgtaactacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataagcctccagatgaccctatctcagagtaccagaccattcctttgaacaaaattgaagacttcggagtacattgcaagcagtattattcattggatattacctatttcaagtcctctctcgattgccatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122657" stop="120472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122363" g_stop="121933" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="712" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120772" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="764" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E726247" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122363" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCT</genome_strand>
        <mrna_strand>CGTTTC-AATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTACGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213323" ref_strand="+" ref_description="SGN-E213323 [cLEC-71-D20]">
      <seq>cgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttagaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggatgcaatattccactatgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttccagttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcggatggtatcattctcatcctggctatggatgctggctctctggcattgatgtaactacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataagcctccagatgaccctatctcagagtaccagaccattcctttgaaacaaattgaagacttcggagtacattgcaagcagtattattcattggatattaccctatttcagtcctctctcgattgccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122650" stop="120476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122350" g_stop="121933" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="700" r_length="282" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="0.96"/>
            <acceptor a_prob="0.914" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120776" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="748" r_length="48" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E213323" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122350" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTA-CCTATTTCAAGTCCTCTCTCGATTGCCAT</genome_strand>
        <mrna_strand>CGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAAACAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCCTATTTC-AGTCCTCTCTCGATTGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450374" ref_strand="+" ref_description="SGN-E450374 [cSTS-9-M21]">
      <seq>ctaaattcttacgcatcgtcggcggcgatggcgcagcaaacctgggagttagagaacaacatcgtgacaatagatgcgccgtcggggtcgacaccggaaaactctgcgtcggatgccatattccactacgacgatgcggcacagacgaagtttcagcgggagaagccgtgggcgagtgaccctcactatttcaagcgtgtgaagatctctgctcttgctcttctcaagatggttgttcacgcgcgttccggaggtacaattgaggtcatgggactcatgcagggtaagactgacggcgatgcaattattgttatggacgcttttgccctccccgttgaaggcactgaaactagggttaatgctcaagctgatgcgtatgaatatatggtcgaatattcacagaccaacaagcaggctggtcgtttggaaaatgtggtcgggtggtaccattcccatcctggttatggatgctggctctctggtattgatgtatctacacaaatgcttaatcagcaatatcaagagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataagcctncagatgaccccatctcggagtaccagaccattcctttgaacaaaattgaagactttggagtacattgcaagcagtattattcattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122646" stop="120636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122346" g_stop="121933" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="696" r_length="282" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="0.98"/>
            <acceptor a_prob="0.914" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120811" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="709" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E450374" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122346" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGG</genome_strand>
        <mrna_strand>CTAAATTCTTACGCATCGTCGGCGGCGATGGCGCAGCAAACCTGGGAGTTAGAGAACAACATCGTGACAATAGATGCGCCGTCGGGGTCGACACCGGAAAACTCTGCGTCGGATGCCATATTCCACTACGACGATGCGGCACAGACGAAGTTTCAGCGGGAGAAGCCGTGGGCGAGTGACCCTCACTATTTCAAGCGTGTGAAGATCTCTGCTCTTGCTCTTCTCAAGATGGTTGTTCACGCGCGTTCCGGAGGTACAATTGAGGTCATGGGACTCATGCAGGGTAAGACTGACGGCGATGCAATTATTGTTATGGACGCTTTTGCCCTCCCCGTTGAAGGCACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATATATGGTCGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGTTTGGAAAATGTGGTCGGGTGGTACCATTCCCATCCTGGTTATGGATGCTGGCTCTCTGGTATTGATGTATCTACACAAATGCTTAATCAGCAATATCAAGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTNCAGATGACCCCATCTCGGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTTGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538699" ref_strand="+" ref_description="SGN-E538699 [TUS-58-B6]">
      <seq>tatattcttaattctttaaattattaattttgtgatttttcacttgtataaaatcagagaagagagctctgcaattgcttcttccccgaagttcagttcccaatggacgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttagaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggatgcaatattccactatgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttccagttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcggatggtatcattctcatcctggctatggatgctggctctctggcattgatgtaactacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctggaagatataagcctccagatgaccctatctcagagtaccagaacattcctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122757" stop="120671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122457" g_stop="121933" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120971" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="772" r_length="247" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E538699" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122457" e_stop="121933"/>
          <exon e_start="121217" e_stop="120971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTCTTAATTCTTTAAATTATTAATTTTGTGATTTTTCACTTGTATAAAATCAGAGAAGAGAGCTCTGCAATTGCTTCTTCCCCGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGA</genome_strand>
        <mrna_strand>TATATTCTTAATTCTTTAAATTATTAATTTTGTGATTTTTCACTTGTATAAAATCAGAGAAGAGAGCTCTGCAATTGCTTCTTCCCCGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGGAAGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGAACATTCCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451031" ref_strand="+" ref_description="SGN-E451031 [cSTS-11-E4]">
      <seq>ctctgaattcttaatgcactcgtcggcggcgatggcacaacaaacctgggagttagagaacaacatcgtgacaatggacgcgccgtcggggtcggcaccggaaaactcagcgtcggatgccatattccactacgacgatgcggcacagactaagttccagcgggaaaaaccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtcatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttcctgttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcgggtggtaccattctcatcctggctatggatgctggctctctggcattgatgtatctacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122648" stop="120712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122348" g_stop="121933" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="121012" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="624" r_length="206" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E451031" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122348" e_stop="121933"/>
          <exon e_start="121217" e_stop="121012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGAATTCTT-ACGCA-TCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCC</genome_strand>
        <mrna_strand>CTCTGAATTCTTAATGCACTCGTCGGCGGCGATGGCACAACAAACCTGGGAGTTAGAGAACAACATCGTGACAATGGACGCGCCGTCGGGGTCGGCACCGGAAAACTCAGCGTCGGATGCCATATTCCACTACGACGATGCGGCACAGACTAAGTTCCAGCGGGAAAAACCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTCATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCTGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGGTGGTACCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTATCTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359429" ref_strand="+" ref_description="SGN-E359429 [cLHT-31-G2]">
      <seq>ctgaagttacaatggacgctctgaattcttacgcatcgtcggcggcgatggcgcagcaaacctgggagttagagaacaacatcgtaacaatcgacgcgccgtcggggtcgaaaccggaaaactccgcgtcggacgctatattccactacgacgatgcggcacagacgaagtttcagcgggagaagccgtgggcaagtgaccctcactacttcaagcgtgtgaagatctctgctcttgctcttctcaagatggttgttcacgcgcgttccggaggtacaattgaggtcatgggactcatgcagggtaagactgacggcgatgccatcattgtaatggacgcttttgccctccccgttgaaggcactgaaactagggttaatgctcaagctgatgcgtatgaatatatggtcgaatattcacagaccaacaagcaggctggtcgtttggaaaatgtggttgggtggtaccattcccatcctggttatggatgctggctctctggcattgatgtatctacgcaaatgctcaaccagcaatatcaggaaccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcatttcgaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122663" stop="120730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122367" g_stop="121933" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="121030" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="622" r_length="188" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E359429" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122367" e_stop="121933"/>
          <exon e_start="121217" e_stop="121030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATA</genome_strand>
        <mrna_strand>CTGAAGTT-ACAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAGCAAACCTGGGAGTTAGAGAACAACATCGTAACAATCGACGCGCCGTCGGGGTCGAAACCGGAAAACTCCGCGTCGGACGCTATATTCCACTACGACGATGCGGCACAGACGAAGTTTCAGCGGGAGAAGCCGTGGGCAAGTGACCCTCACTACTTCAAGCGTGTGAAGATCTCTGCTCTTGCTCTTCTCAAGATGGTTGTTCACGCGCGTTCCGGAGGTACAATTGAGGTCATGGGACTCATGCAGGGTAAGACTGACGGCGATGCCATCATTGTAATGGACGCTTTTGCCCTCCCCGTTGAAGGCACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATATATGGTCGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGTTTGGAAAATGTGGTTGGGTGGTACCATTCCCATCCTGGTTATGGATGCTGGCTCTCTGGCATTGATGTATCTACGCAAATGCTCAACCAGCAATATCAGGAACCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCATTTCGAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455272" ref_strand="+" ref_description="SGN-E455272 [cSTS-25-H8]">
      <seq>cgaagttacaatggacgctctaaattcttacgcatcgtcggcggcgatggcgcagcaaacctgggagttagagaacaacatcgtgacaatagatgcgccgtcggggtcgacaccggaaaactctgcgtcggatgccatattccactacgacgatgcggcacagacgaagtttcagcgggagaagccgtgggcgagtgaccctcactatttcaagcgtgtgaagatctctgctcttgctcttctcaagatggttgttcacgcgcgttccggaggtacaattgaggtcatgggactcatgcagggtaagactgacggcgatgcaattattgttatggacgcttttgccctccccgttgaaggcactgaaactagggttaatgctcaagctgatgcgtatgaatatatggtcgaatattcacagaccaacaagcaggctggtcgtttggaaaatgtggtcgggtggtaccattcccatcctggttatggatgctggctctctggtattgatgtatctacacaaatgcttaatcagcaatatcaagagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaaagtgagattggtgcctttcgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122663" stop="120732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122366" g_stop="121933" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="121032" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="619" r_length="186" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E455272" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122366" e_stop="121933"/>
          <exon e_start="121217" e_stop="121032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACA</genome_strand>
        <mrna_strand>CGAAGTTAC-AATGGACGCTCTAAATTCTTACGCATCGTCGGCGGCGATGGCGCAGCAAACCTGGGAGTTAGAGAACAACATCGTGACAATAGATGCGCCGTCGGGGTCGACACCGGAAAACTCTGCGTCGGATGCCATATTCCACTACGACGATGCGGCACAGACGAAGTTTCAGCGGGAGAAGCCGTGGGCGAGTGACCCTCACTATTTCAAGCGTGTGAAGATCTCTGCTCTTGCTCTTCTCAAGATGGTTGTTCACGCGCGTTCCGGAGGTACAATTGAGGTCATGGGACTCATGCAGGGTAAGACTGACGGCGATGCAATTATTGTTATGGACGCTTTTGCCCTCCCCGTTGAAGGCACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATATATGGTCGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGTTTGGAAAATGTGGTCGGGTGGTACCATTCCCATCCTGGTTATGGATGCTGGCTCTCTGGTATTGATGTATCTACACAAATGCTTAATCAGCAATATCAAGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAAGTGAGATTGGTGCCTTTCGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560730" ref_strand="+" ref_description="SGN-E560730 [20429]">
      <seq>tccaatggacgctctgaattcttatgcatcgtcggcggcgatggcacaacaaacctgggagttagagaacaacatcgtgacaatggacgcgccgtcggggtcggtaccggaaaactccgcgtcggatgccatattccactacgacgatgctgcacagactaagttccagcgggagaaaccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtcatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttcctgttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcgggtggtaccattctcatcctggctatggatgctggctctctggcattgatgtatctacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122658" stop="120752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122359" g_stop="121933" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="121052" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="593" r_length="166" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E560730" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122359" e_stop="121933"/>
          <exon e_start="121217" e_stop="121052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTG</genome_strand>
        <mrna_strand>TCCAATGGACGCTCTGAATTCTTATGCATCGTCGGCGGCGATGGCACAACAAACCTGGGAGTTAGAGAACAACATCGTGACAATGGACGCGCCGTCGGGGTCGGTACCGGAAAACTCCGCGTCGGATGCCATATTCCACTACGACGATGCTGCACAGACTAAGTTCCAGCGGGAGAAACCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTCATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCTGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGGTGGTACCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTATCTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250144" ref_strand="+" ref_description="SGN-E250144 [cLEG-11-C21]">
      <seq>ggacgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttagaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggatgcaatattccactatgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttccagttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcggatggtatcattctcatcctggctatggatgctggctctctggcattgatgtaactacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122653" stop="120752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122353" g_stop="121933" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="121052" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="587" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E250144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122353" e_stop="121933"/>
          <exon e_start="121217" e_stop="121052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTG</genome_strand>
        <mrna_strand>GGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473714" ref_strand="+" ref_description="SGN-E473714 [cSTB-33-M18]">
      <seq>ctgaattcttatgcatcgtcggcggcgatggcacaacaaacctgggagttagagaacaacatcgtgacaatggacgcgccgtcggggtcggtaccggaaaactccgcgtcggatgccatattccactacgacgatgctgcacagactaagttccagcgggagaaaccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtcatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttcctgttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcgggtggtaccattctcatcctggctatggatgctggctctctggcattgatgtatctacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122646" stop="120752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122346" g_stop="121933" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="121052" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="580" r_length="166" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E473714" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122346" e_stop="121933"/>
          <exon e_start="121217" e_stop="121052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTG</genome_strand>
        <mrna_strand>CTGAATTCTTATGCATCGTCGGCGGCGATGGCACAACAAACCTGGGAGTTAGAGAACAACATCGTGACAATGGACGCGCCGTCGGGGTCGGTACCGGAAAACTCCGCGTCGGATGCCATATTCCACTACGACGATGCTGCACAGACTAAGTTCCAGCGGGAGAAACCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTCATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCTGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGGTGGTACCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTATCTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450876" ref_strand="+" ref_description="SGN-E450876 [cSTS-10-P17]">
      <seq>ccgaagttacaatggacgctctaaattcttacgcatcgtcggcggcgatggcgcagcaaacctgggagttagagaacaacatcgtgacaatagatgcgccgtcggggtcgacaccggaaaactctgcgtcagatgccatattccactacgacgatgcggcacagacgaagtttcagcgggagaagccgtgggcgagtgaccctcactatttcaagcgtgtgaagatctctgctcttgctcttctcaagatggttgttcacgcgcgttccggaggtacaattgaggtcatgggactcatgcagggtaagactgacggcgatgcaattattgttatggacgcttttgccctccccgttgaaggcactgaaactagggttaatgctcaagctgatgcgtatgaatatatggtcgaatattcacagaccaacaagcaggctggtcgtttagaaaatgtggtcgggtggtaccattcccatcctggttacggatgctggctctctggtattgatgtatctacacaaatgcttaatcagcaatatcaggagccctttcttgcagttgttattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122663" stop="120782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122367" g_stop="121933" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="121082" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="570" r_length="136" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E450876" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122367" e_stop="121933"/>
          <exon e_start="121217" e_stop="121082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATC</genome_strand>
        <mrna_strand>CCGAAGTT-ACAATGGACGCTCTAAATTCTTACGCATCGTCGGCGGCGATGGCGCAGCAAACCTGGGAGTTAGAGAACAACATCGTGACAATAGATGCGCCGTCGGGGTCGACACCGGAAAACTCTGCGTCAGATGCCATATTCCACTACGACGATGCGGCACAGACGAAGTTTCAGCGGGAGAAGCCGTGGGCGAGTGACCCTCACTATTTCAAGCGTGTGAAGATCTCTGCTCTTGCTCTTCTCAAGATGGTTGTTCACGCGCGTTCCGGAGGTACAATTGAGGTCATGGGACTCATGCAGGGTAAGACTGACGGCGATGCAATTATTGTTATGGACGCTTTTGCCCTCCCCGTTGAAGGCACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATATATGGTCGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGTTTAGAAAATGTGGTCGGGTGGTACCATTCCCATCCTGGTTACGGATGCTGGCTCTCTGGTATTGATGTATCTACACAAATGCTTAATCAGCAATATCAGGAGCCCTTTCTTGCAGTTGTTATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316876" ref_strand="+" ref_description="SGN-E316876 [cTOA-27-G4]">
      <seq>gaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttaaaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggatgcaatattccactatgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttccagttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaactagcaggctggtcggctggagaatgtggtcggatggtatcattctcatcctggctatggatgctggctctctggcattgatggaactacaccaatgcttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122644" stop="120822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122344" g_stop="121933" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="121122" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="508" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E316876" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122344" e_stop="121933"/>
          <exon e_start="121217" e_stop="121122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAAC</genome_strand>
        <mrna_strand>GAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAAAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACTAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGGAACTACACCAATGCTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310412" ref_strand="+" ref_description="SGN-E310412 [cTOA-10-O8]">
      <seq>tcagttcccaatggacgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttagaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggatgcaatattccactatgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttccagttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcggatggtatcattctcatcctggctatggatgctggctctctggcattgatgtaactacacaaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122665" stop="120826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122365" g_stop="121933" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="121126" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="525" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E310412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122365" e_stop="121933"/>
          <exon e_start="121217" e_stop="121126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCT</genome_strand>
        <mrna_strand>TCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476109" ref_strand="+" ref_description="SGN-E476109 [cSTB-43-I6]">
      <seq>catcgtcggcggcgatggcacaacaaacctgggagttagagaacaacatcgtgacaatggacgcgccgtcggggtcggcaccggaaaactcagcgtcggatgccatattccactacgacgatgcggcacagactaagttccagcgggaaaaaccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtcatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttcctgttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcgggtggtaccattctcatcctggctatggatgctggctctctggcattgatgtatctacacaaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122633" stop="120826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122333" g_stop="121933" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="121126" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="493" r_length="92" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E476109" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122333" e_stop="121933"/>
          <exon e_start="121217" e_stop="121126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCT</genome_strand>
        <mrna_strand>CATCGTCGGCGGCGATGGCACAACAAACCTGGGAGTTAGAGAACAACATCGTGACAATGGACGCGCCGTCGGGGTCGGCACCGGAAAACTCAGCGTCGGATGCCATATTCCACTACGACGATGCGGCACAGACTAAGTTCCAGCGGGAAAAACCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTCATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCTGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGGTGGTACCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTATCTACACAAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436790" ref_strand="+" ref_description="SGN-E436790 [cSTA-1-I21]">
      <seq>ggcaaactgtattcttatgcatcgtcggcggcgatggcacaacaaacctgggagttagagaacaacatcgtgacaatggacgcgccgtcggggtcggtaccggaaaactccgcgtcggatgccatattccactacgacgatgctgcacagactaagttccagcgggagaaaccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtcatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttcctgttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggttaatgccttttatcacttttttttcttctttttgatgttgtggtgtcgataatggagaagggtacactagcgctaaactagtcagtttacagagactttcgattttaataaatattgtaaacgggttcaaaaggggcaggacggttagttgatagaattgattgagattgaagctttgttcttgttggtgtccgggacagtttgcattgactagttacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122646" stop="121404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122352" g_stop="121704" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E436790" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122352" e_stop="121704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCT</genome_strand>
        <mrna_strand>GGCAAACTGTATTCTTATGCATCGTCGGCGGCGATGGCACAACAAACCTGGGAGTTAGAGAACAACATCGTGACAATGGACGCGCCGTCGGGGTCGGTACCGGAAAACTCCGCGTCGGATGCCATATTCCACTACGACGATGCTGCACAGACTAAGTTCCAGCGGGAGAAACCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTCATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCTGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGG-T--TAATGCC-TTTTATCAC-TTTTTTTTCTTCTTTTTGATGTTGTGGTGTCGATAATGGAGAAGGGTACACTAGCGCTAAACTAGTCAGTTTACAGAGAC-TTTCGATTTTAATAAATATTGTAAACGGGTTC-AAAAGGGGCAGGACGGTTAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGTGTCCGGGACAGTTTGCATTGACTAGTTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307233" ref_strand="+" ref_description="SGN-E307233 [cLEY-15-N18]">
      <seq>gaagttacaatggactctctgaatgcttacgcatcgtcggcggcgatggcgcagcaaacctgggagttagagaacaacatcgtaacaatcgacgcgccgtcggggtcgaaaccggaaaactccgcgtcggacgctatattccactacgacgatgcggcacagacgaagtttcagcgggagaagccgtgggcgagtgaccctcactacttcaagcgtgtgaagatctctgctcttgctcttctcaagatggttgttcacgcgcgttccggaggtacaattgaggtcatgggactcatgcagggtaagactgacggcgatgccatcattgtaatggacgctattgccctccccgttgaaggcactgaaactagggttaatgctcaagctgatgcgtatgaatatatggtcgaatattcacagaccaacaagcaggctggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122663" stop="121630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122365" g_stop="121933" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E307233" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122365" e_stop="121933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG</genome_strand>
        <mrna_strand>GAAGTTAC-AATGGACTCTCTGAATGCTTACGCATCGTCGGCGGCGATGGCGCAGCAAACCTGGGAGTTAGAGAACAACATCGTAACAATCGACGCGCCGTCGGGGTCGAAACCGGAAAACTCCGCGTCGGACGCTATATTCCACTACGACGATGCGGCACAGACGAAGTTTCAGCGGGAGAAGCCGTGGGCGAGTGACCCTCACTACTTCAAGCGTGTGAAGATCTCTGCTCTTGCTCTTCTCAAGATGGTTGTTCACGCGCGTTCCGGAGGTACAATTGAGGTCATGGGACTCATGCAGGGTAAGACTGACGGCGATGCCATCATTGTAATGGACGCTATTGCCCTCCCCGTTGAAGGCACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATATATGGTCGAATATTCACAGACCAACAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337290" ref_strand="+" ref_description="SGN-E337290 [cTOE-7-B4]">
      <seq>ccaatggacgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttagaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggatgcaatattccactatgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactactgcaagcgcgtgaagatctgtgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgctttagcccttccagttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcatgctggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122658" stop="121630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122358" g_stop="121933" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E337290" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122358" e_stop="121933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG</genome_strand>
        <mrna_strand>CCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTGCAAGCGCGTGAAGATCTGTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTAGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447654" ref_strand="+" ref_description="SGN-E447654 [cSTA-28-M15]">
      <seq>gacgctctaaattcttacgcatcgtccgcggcgatggcgcatcaaacctgggagttagagaacaacatcgtgacaatagatgcgccgtcggggtcgacaccggaaaactctgcgtcagatgccatattccactacgacgacgcggcacagacaaagtttcagcgggagaagccgtgggcgagtgaccctcactatttcaagcgtgtgaagatctctgctcttgctcttctcaagatggttgttcacgcgcgttccggaggtacaattgaggtcatgggactcatgcagggtaagactgacggcgatgcaattattgctatggacgcttttgccctccccgttgcaggcactgaaactagggttaatgctcaagctgatgcgtatgaatatatggtcgaatattcacagaccaacaagcaagctggtcgtttagaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122652" stop="121630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122352" g_stop="121933" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E447654" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122352" e_stop="121933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG</genome_strand>
        <mrna_strand>GACGCTCTAAATTCTTACGCATCGTCCGCGGCGATGGCGCATCAAACCTGGGAGTTAGAGAACAACATCGTGACAATAGATGCGCCGTCGGGGTCGACACCGGAAAACTCTGCGTCAGATGCCATATTCCACTACGACGACGCGGCACAGACAAAGTTTCAGCGGGAGAAGCCGTGGGCGAGTGACCCTCACTATTTCAAGCGTGTGAAGATCTCTGCTCTTGCTCTTCTCAAGATGGTTGTTCACGCGCGTTCCGGAGGTACAATTGAGGTCATGGGACTCATGCAGGGTAAGACTGACGGCGATGCAATTATTGCTATGGACGCTTTTGCCCTCCCCGTTGCAGGCACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATATATGGTCGAATATTCACAGACCAACAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485531" ref_strand="+" ref_description="SGN-E485531 [cSTE-18-I14]">
      <seq>catcgtcggcggcgatggcacaacaaacctgggagttagagaacaacatcgtgacaatggacgcgccgtcggggtcggtaccggaaaactccgcgtcggatgccatattccactacgacgatgctgcacagactaagttccagcgggagaaaccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtcatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttcctgttgaaggaactgaaactagggctaatgctcaagctgatgcgtatgaatacatggttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122633" stop="121653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122333" g_stop="121953" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E485531" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122333" e_stop="121953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAAT</genome_strand>
        <mrna_strand>CATCGTCGGCGGCGATGGCACAACAAACCTGGGAGTTAGAGAACAACATCGTGACAATGGACGCGCCGTCGGGGTCGGTACCGGAAAACTCCGCGTCGGATGCCATATTCCACTACGACGATGCTGCACAGACTAAGTTCCAGCGGGAGAAACCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTCATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCTGTTGAAGGAACTGAAACTAGGGCTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367623" ref_strand="+" ref_description="SGN-E367623 [cLPT-14-M15]">
      <seq>cccaatggacgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttagaaaacaacatcgtgacgatggacgcgccgtcggggtcggcaccggaaaactctgcgtcggatgcaatattccactacgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttccagttgaaggaactgaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122659" stop="121695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122359" g_stop="121995" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E367623" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122359" e_stop="121995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTA</genome_strand>
        <mrna_strand>CCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGATGGACGCGCCGTCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTACGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275112" ref_strand="+" ref_description="SGN-E275112 [cLEN-9-I16]">
      <seq>atattcttaattctttaaattattaattttgtgatttttcacttgtataaaatcagagaagagagctctgcaattgcttcttccccgaagttcagttcccaatggacgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttagaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggatgcaatattccactatgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122756" stop="121723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122456" g_stop="122023" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E275112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122456" e_stop="122023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTCTTAATTCTTTAAATTATTAATTTTGTGATTTTTCACTTGTATAAAATCAGAGAAGAGAGCTCTGCAATTGCTTCTTCCCCGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTT</genome_strand>
        <mrna_strand>ATATTCTTAATTCTTTAAATTATTAATTTTGTGATTTTTCACTTGTATAAAATCAGAGAAGAGAGCTCTGCAATTGCTTCTTCCCCGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303804" ref_strand="+" ref_description="SGN-E303804 [cLEX-4-F23]">
      <seq>gaagttacaatggactctctgaattcttacgcatcgtcggcggcgatggcgcagcaaacctgggagttagagaacaacatcgtaacaatcgacgcgccgtcggggtcgaaaccggaaaactccgcgtcggacgctatattccactacgacgatgcggcacagacgaagtttcagcgggagaagccgtgggcgagtgaccctcactacttcaagcgtgtgaagaactctgctcttgctcttctcaagatggttgttcacgcgcgttccggaggtacaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122663" stop="121785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122365" g_stop="122085" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E303804" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122365" e_stop="122085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTG</genome_strand>
        <mrna_strand>GAAGTTAC-AATGGACTCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAGCAAACCTGGGAGTTAGAGAACAACATCGTAACAATCGACGCGCCGTCGGGGTCGAAACCGGAAAACTCCGCGTCGGACGCTATATTCCACTACGACGATGCGGCACAGACGAAGTTTCAGCGGGAGAAGCCGTGGGCGAGTGACCCTCACTACTTCAAGCGTGTGAAGAACTCTGCTCTTGCTCTTCTCAAGATGGTTGTTCACGCGCGTTCCGGAGGTACAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428139" ref_strand="+" ref_description="SGN-E428139 [STM-49-D24]">
      <seq>tttgagcttaacccatcatatccattaatcttctctacccctcaccgaccaagaatgcgctcttacagactcaaaatccagaacaattcgcttttgtttaagcgaatcatgcagacaaggcaacctcatctcgcccgccaactgttcgatacaattcctcaaccatcaactgtcctttggaacacaataatagttgggtttatctgtaataacatgccccatgaagccatttcattctattctcgattgaaacatgtgggttcgtccgtatgtgatcagtatacttattcctctgttctcaaggcttgcgcggagaccaaacggattcttgtaggtaaagttgtgcattgccacattctgcgttttgggattcatactagtaggattgttagtaattttttgttgaatatgtactctgctatttgtcttacatcggataatggtactgattgtgatttagtttaaagggtgtttagaactatgcgtaaaagaaatgttgttgcatggaattctattttttcatggtatatgaaaaggaagaggtttttggaagcagtgaggtgttttattatgatgatgagattaggcattaagccaactgttgttagttttattaatgtttttcctgctgtatcagaaataggggatgttagagttgctgattttctttatgggttgcttgtgaaattgggtaatgcatatgtaaatgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0291F09-bBnjU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0291F09.1" temp_strand="-" temp_description="C00HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="141835" stop="140522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141535" g_stop="140822" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0291F09.1" gen_strand="-" ref_id="SGN-E428139" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141535" e_stop="140822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGCTTAACCCATCTCCCAAATTACTCTTCTCTACTCCTCACCGACCAAGAGTGCACTCTTACAGACTCAAAACCCAGAACAATTCGCTTTTGTTTAAGCGAATCGTGCAGACAAGGCCAACCCCATCTCGCCTGCCAACTGTTCAATACAATTCCTCAACCATCAACTGTCCTTTGGAACACAATAATAATTGGGTTTATCTGTAATAACATGCCCCATGAATCCATTTTATTCTATTCTAGATTGAAACATGTGGATTCATCCGTATGTGATCAGTATACTTATTCCTCTGTTCTTAAGGCTTGCGCAGAGACCAAAGGGATTCTTGTAGGTAAAGCCGTGCATCGCCACATTCTGTTTTCTGGGATTCATACTTGTAGGATTGTTAGTAATTCTTTGTTGAATATGTACTCTGCTACTTGTCTTACATTGGATAATGGTTCTGATTGTGGTTTAGTTTAAAGGGTGTTTAGAACTATGCATCAAAGAAATGTTGTTGCGCGGATTACTATTTTTTCATGGTATGTGAAAAGGAAGAGGTTTTCGGAAGCAGTGAGGTGTTTTGTTATGATGATGAGATAAGGCATTAAGCCAACTGTTGTTAGTTTTATTAATGTTTTTCCTACTGTATCAGAAATAAGGGATGTTAGAGTTGCTGATGTTCTTTATGGGTTGCTTGCGAAATTGGGTAATGCATATGTAAATGACTT</genome_strand>
        <mrna_strand>TTTGAGCTTAACCCATCATATCCATTAATCTTCTCTACCCCTCACCGACCAAGAATGCGCTCTTACAGACTCAAAATCCAGAACAATTCGCTTTTGTTTAAGCGAATCATGCAGACAAGG-CAACCTCATCTCGCCCGCCAACTGTTCGATACAATTCCTCAACCATCAACTGTCCTTTGGAACACAATAATAGTTGGGTTTATCTGTAATAACATGCCCCATGAAGCCATTTCATTCTATTCTCGATTGAAACATGTGGGTTCGTCCGTATGTGATCAGTATACTTATTCCTCTGTTCTCAAGGCTTGCGCGGAGACCAAACGGATTCTTGTAGGTAAAGTTGTGCATTGCCACATTCTGCGTTTTGGGATTCATACTAGTAGGATTGTTAGTAATTTTTTGTTGAATATGTACTCTGCTATTTGTCTTACATCGGATAATGGTACTGATTGTGATTTAGTTTAAAGGGTGTTTAGAACTATGCGTAAAAGAAATGTTGTTGCATGGAATTCTATTTTTTCATGGTATATGAAAAGGAAGAGGTTTTTGGAAGCAGTGAGGTGTTTTATTATGATGATGAGATTAGGCATTAAGCCAACTGTTGTTAGTTTTATTAATGTTTTTCCTGCTGTATCAGAAATAGGGGATGTTAGAGTTGCTGATTTTCTTTATGGGTTGCTTGTGAAATTGGGTAATGCATATGTAAATGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>121</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5374" PGL_stop="4821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5374" e_stop="4821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="5374" e_stop="4821" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5374" stop="4821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCCGTCCCGTCTAGTACTAGGGAGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACGCCTCCAGTATTTTCTGCACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTGCAGGGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTTATGAGCTACTACACAAGATGGATATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGAGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> A  R  P  V  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  T  S  T  E  *  G  I  A  S  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  W  V  I  *  S  R  S  N  A  S  S  I  F  C  T  S  T  S  G  S  R  G  T  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  I  S  S  S  D  C  R  A  C  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  R  F  S  G  *  L  L  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  E  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  V  P  S  S  T  R  E  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  A  G  P  V  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  Y  E  L  L  H  K  M  D  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   P  S  R  L  V  L  G  R  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  N  K  Y  R  M  R  D  C  L  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  V  G  Y  L  I  K  V  K  R  L  Q  Y  F  L  H  Q  H  L  R  L  Q  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  I  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5373" stop="4822"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVPSSTREVTPPPTEEVVREGEEGETEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATVAPRMDASLEIGTFPRLTAGPVMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCYELLHKMDIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6154" PGL_stop="5488"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6154" e_stop="5488"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="6154" e_stop="5488" e_length="667"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6154" stop="5488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6106" stop="5888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCAAACGTGTCGTCGTCTTCAACTCAACCGCAACTCTAGCCAGTCTTCAGTACTCCGGATTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGAACTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTTATGTATTTAAGCTTCTTAGATACTCTTAGATTAGTAATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAATTGATTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGACCCGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGATGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTTGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACACCG</gDNA_template>
            <first_frame> Q  Q  T  C  R  R  L  Q  L  N  R  N  S  S  Q  S  S  V  L  R  I  S  G  *  A  N  A  S  S  L  D  W  N  F  L  F  M  S  *  C  L  E  V  P  A  W  T  S  F  L  C  I  *  A  S  *  I  L  L  D  *  *  F  E  D  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  I  V  V  E  F  L  E  V  I  E  L  I  F  I  N  E  F  K  S  S  A  L  L  S  V  A  I  I  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  D  P  I  W  V  V  T  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  C  Y  K  T  L  G  K  F  H  S  F  F  L  S  C  Y  Y  L  G  P  I  G  I  L  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  C  A  N  T  N  T  </first_frame>
            <second_frame>  S  K  R  V  V  V  F  N  S  T  A  T  L  A  S  L  Q  Y  S  G  F  Q  G  E  L  M  L  L  A  W  T  G  T  S  S  S  C  L  D  A  L  K  F  R  H  G  L  A  F  Y  V  F  K  L  L  R  Y  S  *  I  S  N  L  R  I  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  L  L  S  F  *  K  L  L  N  *  F  L  L  M  S  L  S  L  P  H  Y  F  L  L  L  L  Y  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  T  R  F  G  S  *  Q  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  D  A  I  R  L  *  E  N  S  I  L  S  F  F  R  A  I  T  W  V  Q  L  V  S  W  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  P  T  P </second_frame>
            <third_frame>   A  N  V  S  S  S  S  T  Q  P  Q  L  *  P  V  F  S  T  P  D  F  R  V  S  *  C  F  *  L  G  L  E  L  P  L  H  V  L  M  P  *  S  S  G  M  D  *  L  F  M  Y  L  S  F  L  D  T  L  R  L  V  I  *  G  *  M  F  L  *  *  *  L  P  D  F  G  D  N  N  S  C  *  V  F  R  S  Y  *  I  D  F  Y  *  *  V  *  V  F  R  I  T  F  C  C  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  R  P  D  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  M  L  *  D  F  R  K  I  P  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0291F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15376" PGL_stop="14789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15376" e_stop="14789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="15376" e_stop="14789" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15376" stop="14789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGTATCATCCGGGGAAGACCAATGTTGTGGCCGATGCTTTGAGAAGGAAGACTCATAGCATTGGGAGTCTTGTATCTCTTAGTGTTGAGGAGAGACCATTGGTTAGAGATGTTCAATTGTTAGCTAACAATCTTGTCCGATTGCAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCGAGTAGATTCGTGCACACCAGTTTGATGATGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGTGGGGAAGCTAAGGAGGTTGTCCTTCATTCTGATGGTGTCTTGAGGATCGGAGGCAAGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTTTTGATATTCCATCCATCCGGGAGCGGCGAAGATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTCTGTTTTGAGGTGTTTGACTTGCCAGGGGGTCAAGTGTGAGCACCAGCGGCCTAGGGGTGTATCTCAAAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</gDNA_template>
            <first_frame> F  C  I  I  R  G  R  P  M  L  W  P  M  L  *  E  G  R  L  I  A  L  G  V  L  Y  L  L  V  L  R  R  D  H  W  L  E  M  F  N  C  *  L  T  I  L  S  D  C  R  S  Q  R  R  V  M  G  *  L  L  L  L  R  L  D  L  L  *  S  S  R  F  V  H  T  S  L  M  M  K  N  Y  V  S  F  E  T  K  Y  *  V  G  K  L  R  R  L  S  F  I  L  M  V  S  *  G  S  E  A  R  F  V  C  P  R  Q  A  I  *  L  D  *  S  L  R  R  P  I  V  F  D  I  P  S  I  R  E  R  R  R  C  I  M  I  *  V  S  I  T  G  G  V  G  *  R  E  I  L  Q  T  L  F  *  G  V  *  L  A  R  G  S  S  V  S  T  S  G  L  G  V  Y  L  K  G  C  L  F  L  L  G  S  G  S  G  L  L </first_frame>
            <second_frame>  S  V  S  S  G  E  D  Q  C  C  G  R  C  F  E  K  E  D  S  *  H  W  E  S  C  I  S  *  C  *  G  E  T  I  G  *  R  C  S  I  V  S  *  Q  S  C  P  I  A  D  L  R  G  E  *  W  D  D  C  F  Y  *  G  S  I  F  F  S  R  V  D  S  C  T  P  V  *  *  *  K  I  M  S  H  S  R  Q  S  I  E  W  G  S  *  G  G  C  P  S  F  *  W  C  L  E  D  R  R  Q  D  L  C  A  Q  D  R  R  F  D  *  I  D  P  *  G  G  P  L  F  L  I  F  H  P  S  G  S  G  E  D  V  S  *  S  E  S  A  L  L  V  V  W  D  E  E  R  Y  Y  R  L  C  F  E  V  F  D  L  P  G  G  Q  V  *  A  P  A  A  *  G  C  I  S  K  D  A  Y  S  Y  L  E  V  G  A  D  Y   </second_frame>
            <third_frame>   L  Y  H  P  G  K  T  N  V  V  A  D  A  L  R  R  K  T  H  S  I  G  S  L  V  S  L  S  V  E  E  R  P  L  V  R  D  V  Q  L  L  A  N  N  L  V  R  L  Q  I  S  E  E  S  D  G  M  I  A  F  I  E  A  R  S  S  L  V  E  *  I  R  A  H  Q  F  D  D  E  K  L  C  L  I  R  D  K  V  L  S  G  E  A  K  E  V  V  L  H  S  D  G  V  L  R  I  G  G  K  I  C  V  P  K  T  G  D  L  I  R  L  I  L  E  E  A  H  C  F  *  Y  S  I  H  P  G  A  A  K  M  Y  H  D  L  S  Q  H  Y  W  W  C  G  M  K  R  D  I  T  D  S  V  L  R  C  L  T  C  Q  G  V  K  C  E  H  Q  R  P  R  G  V  S  Q  R  M  P  I  P  T  W  K  W  E  R  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15374" stop="15165"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYHPGKTNVVADALRRKTHSIGSLVSLSVEERPLVRDVQLLANNLVRLQISEESDGMIAFIEARSSLVE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14984" stop="14790"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSIHPGAAKMYHDLSQHYWWCGMKRDITDSVLRCLTCQGVKCEHQRPRGVSQRMPIPTWKWERIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="17492" PGL_stop="17919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17492" e_stop="17919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="17492" e_stop="17919" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17492" stop="17919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAAACATACGAGCCCTGACCCGGGCTATAAGAACCCCTAGATGTCTGTCCACCCTCAAATGTTGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTTTGTGATCCCCTACCTCCAGATGAGGCACCATGAAACTGACCTGATATACGGGCTCTTTTAGGGTCCCCAAACTCTTCTCTCTCCATCAATTCTGCCTCTTTGGCGGCGCTCACAATGGACTGGAAAGAAGCCCCCTCCCTAATGCCCGAAACACAGCTGACCTAATAGAGAAAGTCAATTCCCTCACAAATCTGTGGATCCTCTCTGTCTTATTTGGAATAATGGACAACGCATGCCTAGACAACTGGCAAAAACGCGCCTCATACTCTGTAACTGATAAACCATCCTGTCTCAGACTCTCAAACCTCAAGG</gDNA_template>
            <first_frame> V  K  H  T  S  P  D  P  G  Y  K  N  P  *  M  S  V  H  P  Q  M  L  A  *  M  H  E  *  V  P  A  A  E  K  N  H  S  L  F  V  I  P  Y  L  Q  M  R  H  H  E  T  D  L  I  Y  G  L  F  *  G  P  Q  T  L  L  S  P  S  I  L  P  L  W  R  R  S  Q  W  T  G  K  K  P  P  P  *  C  P  K  H  S  *  P  N  R  E  S  Q  F  P  H  K  S  V  D  P  L  C  L  I  W  N  N  G  Q  R  M  P  R  Q  L  A  K  T  R  L  I  L  C  N  *  *  T  I  L  S  Q  T  L  K  P  Q   </first_frame>
            <second_frame>  *  N  I  R  A  L  T  R  A  I  R  T  P  R  C  L  S  T  L  K  C  W  H  R  C  M  N  R  S  P  L  L  K  R  T  T  H  S  L  *  S  P  T  S  R  *  G  T  M  K  L  T  *  Y  T  G  S  F  R  V  P  K  L  F  S  L  H  Q  F  C  L  F  G  G  A  H  N  G  L  E  R  S  P  L  P  N  A  R  N  T  A  D  L  I  E  K  V  N  S  L  T  N  L  W  I  L  S  V  L  F  G  I  M  D  N  A  C  L  D  N  W  Q  K  R  A  S  Y  S  V  T  D  K  P  S  C  L  R  L  S  N  L  K  </second_frame>
            <third_frame>   E  T  Y  E  P  *  P  G  L  *  E  P  L  D  V  C  P  P  S  N  V  G  I  D  A  *  I  G  P  R  C  *  K  E  P  L  T  L  C  D  P  L  P  P  D  E  A  P  *  N  *  P  D  I  R  A  L  L  G  S  P  N  S  S  L  S  I  N  S  A  S  L  A  A  L  T  M  D  W  K  E  A  P  S  L  M  P  E  T  Q  L  T  *  *  R  K  S  I  P  S  Q  I  C  G  S  S  L  S  Y  L  E  *  W  T  T  H  A  *  T  T  G  K  N  A  P  H  T  L  *  L  I  N  H  P  V  S  D  S  Q  T  S  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17652" stop="17918"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTGSFRVPKLFSLHQFCLFGGAHNGLERSPLPNARNTADLIEKVNSLTNLWILSVLFGIMDNACLDNWQKRASYSVTDKPSCLRLSNLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="19801" PGL_stop="19221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19801" e_stop="19221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="19801" e_stop="19221" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19801" stop="19221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGCATTGTATCTGAGACATGGATGTGGTAAGAGGATGTACCATTTCGAGGGTCGTATCGCGCGCCGCGATGGATATTATATTTCGAGGGACGTATCACGCGCCGCGAAGGTTACTATTATCGAGGGTCGTGTCATGCGCCGCGATAGATGCATGGACAGATATGTCCCCCATGGGTCCCGGACTGAGAGACAGCGGGTGCGTATCATTAAGAAAGACATGCATCACGATGTTTGACATTGCATCTCATGGTATTGCACATTTTATTATTGATGAACTTGAACACGTGTTTTGCTGATATTGTGATTGTTTCTCTGTGAAGCTTGTGACTGTTGAATATTGAGTTGTTATTGAGAATGTGTAAAATGATAGAGTGTGGTTATTGAGTTGTGTGTTTGGTAAACCGTTAAGCTGTAGCGTGGAGGTTTAGATAGGGCGTAAGGAGTACCCGCATTTTGTTCACTTAACTTGTGTTTAGAGGTTTGCTTGTTGGGTACCGCGTGGTTTAGTACTCACCCCTTGCTTCTATAAATTTTGTAGGTTACGAGCCCGGATCTTCGTGATACCTGTCATTCTTTTTG</gDNA_template>
            <first_frame> I  A  L  Y  L  R  H  G  C  G  K  R  M  Y  H  F  E  G  R  I  A  R  R  D  G  Y  Y  I  S  R  D  V  S  R  A  A  K  V  T  I  I  E  G  R  V  M  R  R  D  R  C  M  D  R  Y  V  P  H  G  S  R  T  E  R  Q  R  V  R  I  I  K  K  D  M  H  H  D  V  *  H  C  I  S  W  Y  C  T  F  Y  Y  *  *  T  *  T  R  V  L  L  I  L  *  L  F  L  C  E  A  C  D  C  *  I  L  S  C  Y  *  E  C  V  K  *  *  S  V  V  I  E  L  C  V  W  *  T  V  K  L  *  R  G  G  L  D  R  A  *  G  V  P  A  F  C  S  L  N  L  C  L  E  V  C  L  L  G  T  A  W  F  S  T  H  P  L  L  L  *  I  L  *  V  T  S  P  D  L  R  D  T  C  H  S  F   </first_frame>
            <second_frame>  L  H  C  I  *  D  M  D  V  V  R  G  C  T  I  S  R  V  V  S  R  A  A  M  D  I  I  F  R  G  T  Y  H  A  P  R  R  L  L  L  S  R  V  V  S  C  A  A  I  D  A  W  T  D  M  S  P  M  G  P  G  L  R  D  S  G  C  V  S  L  R  K  T  C  I  T  M  F  D  I  A  S  H  G  I  A  H  F  I  I  D  E  L  E  H  V  F  C  *  Y  C  D  C  F  S  V  K  L  V  T  V  E  Y  *  V  V  I  E  N  V  *  N  D  R  V  W  L  L  S  C  V  F  G  K  P  L  S  C  S  V  E  V  *  I  G  R  K  E  Y  P  H  F  V  H  L  T  C  V  *  R  F  A  C  W  V  P  R  G  L  V  L  T  P  C  F  Y  K  F  C  R  L  R  A  R  I  F  V  I  P  V  I  L  F  </second_frame>
            <third_frame>   C  I  V  S  E  T  W  M  W  *  E  D  V  P  F  R  G  S  Y  R  A  P  R  W  I  L  Y  F  E  G  R  I  T  R  R  E  G  Y  Y  Y  R  G  S  C  H  A  P  R  *  M  H  G  Q  I  C  P  P  W  V  P  D  *  E  T  A  G  A  Y  H  *  E  R  H  A  S  R  C  L  T  L  H  L  M  V  L  H  I  L  L  L  M  N  L  N  T  C  F  A  D  I  V  I  V  S  L  *  S  L  *  L  L  N  I  E  L  L  L  R  M  C  K  M  I  E  C  G  Y  *  V  V  C  L  V  N  R  *  A  V  A  W  R  F  R  *  G  V  R  S  T  R  I  L  F  T  *  L  V  F  R  G  L  L  V  G  Y  R  V  V  *  Y  S  P  L  A  S  I  N  F  V  G  Y  E  P  G  S  S  *  Y  L  S  F  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19785" stop="19504"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMDVVRGCTISRVVSRAAMDIIFRGTYHAPRRLLLSRVVSCAAIDAWTDMSPMGPGLRDSGCVSLRKTCITMFDIASHGIAHFIIDELEHVFC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19801" stop="19565"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IALYLRHGCGKRMYHFEGRIARRDGYYISRDVSRAAKVTIIEGRVMRRDRCMDRYVPHGSRTERQRVRIIKKDMHHDV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="37518" PGL_stop="44555"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37518" e_stop="38529"/>
            <exon e_start="38813" e_stop="39004"/>
            <exon e_start="39083" e_stop="39170"/>
            <exon e_start="43652" e_stop="43722"/>
            <exon e_start="43806" e_stop="43889"/>
            <exon e_start="44019" e_stop="44485"/>
            <exon e_start="44542" e_stop="44555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.956"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.954" e_score="0.976"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="37518" e_stop="38529" e_length="1012"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38530" i_stop="38812" i_length="283"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38813" e_stop="39004" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="39005" i_stop="39082" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39083" e_stop="39170" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="39171" i_stop="43651" i_length="4481"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43652" e_stop="43722" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43723" i_stop="43805" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43806" e_stop="43889" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43890" i_stop="44018" i_length="129"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="44019" e_stop="44485" e_length="467"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="44486" i_stop="44541" i_length="56"/>
          </intron>
          <exon e_serial="7" e_score="0.857">
            <gDNA_exon_boundary e_start="44542" e_stop="44555" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37518" stop="37847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37524" stop="38190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37529" stop="38121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37535" stop="38241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37549" stop="37859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37581" stop="38281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37586" stop="38176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37638" stop="38121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37659" stop="38021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37661" stop="38409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38302" stop="38529"/>
              <exon start="38813" stop="39004"/>
              <exon start="39083" stop="39170"/>
              <exon start="43652" stop="43722"/>
              <exon start="43806" stop="43889"/>
              <exon start="44019" stop="44165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38307" stop="38529"/>
              <exon start="38813" stop="39004"/>
              <exon start="39083" stop="39170"/>
              <exon start="43652" stop="43722"/>
              <exon start="43806" stop="43817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38437" stop="38529"/>
              <exon start="38813" stop="39004"/>
              <exon start="39083" stop="39170"/>
              <exon start="43652" stop="43722"/>
              <exon start="43806" stop="43889"/>
              <exon start="44019" stop="44138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38498" stop="38529"/>
              <exon start="38813" stop="39004"/>
              <exon start="39083" stop="39170"/>
              <exon start="43652" stop="43722"/>
              <exon start="43806" stop="43889"/>
              <exon start="44019" stop="44485"/>
              <exon start="44542" stop="44555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427342" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38833" stop="39004"/>
              <exon start="39083" stop="39170"/>
              <exon start="43652" stop="43722"/>
              <exon start="43806" stop="43889"/>
              <exon start="44019" stop="44255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38858" stop="39004"/>
              <exon start="39083" stop="39170"/>
              <exon start="43652" stop="43722"/>
              <exon start="43806" stop="43889"/>
              <exon start="44019" stop="44485"/>
              <exon start="44542" stop="44548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCACCGGTAATGTAGTTGAAGTCTCCGCCCTCATTCTCTTTCGATGCATTCGAGAAATCCATTTCTATAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAGGTTTCAACGGTAGCAGCTGCGGTTGCGGTCCCGGTTACGGCTACGTCATCTTCTGATGCTGCGCCTGTGAAAATGGCGTCGTCGATTCACCCAGCATCAGAAGGGGGGAAGAGAGTGGTGGCTTCACCGTATGCTAAGAAATTGGCTAAGGAATTGGGGTTGGATTTGAGGGGAGTGGTGGGCAGCGGGCCTAATGGGAGGATTGTGGCAAAGGATGTTGAAGCAGCAGCTGGTTCTGCTCCTATTGGTGTTGCTGCAGCGGCGAAGCCAAGTGGTGGTGCACCAGCGGCCCCAGCAGTAGAATTGGGGACGACTGTGCCATTTACGACAATGCAGAGTGCGGTGAGTCGAAATATGGTGGAGAGTTTGGCAGTTCCAACTTTTAGAGTGGGGTATACTATTACTACTAATGCCCTTGATGCTCTCTACAAGAAG : GTCAAGTCGAAAGGAGTGACAATGACAGCATTGTTGGCAAAAGCCACAGCACTTGCATTGGTGCAACATCCTGTTGTGAACTCTAGTTGTAGAGATGGGAAGAGTTTCACATATAACAGTAGTATTAACATTGCTGTTGCAGTCGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAG : GTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAG : GCACTTTTACCCTATCCAACCTTGGAATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCACCAGGAACT : GGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAG : GTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTACAAA : AAAAACACCTAAGA</gDNA_template>
            <first_frame> S  T  G  N  V  V  E  V  S  A  L  I  L  F  R  C  I  R  E  I  H  F  Y  R  K  T  H  K  P  T  L  F  F  S  P  L  L  K  S  F  D  F  S  *  F  V  R  K  N  V  S  S  S  S  I  H  L  H  P  H  H  T  H  Y  P  P  S  P  F  C  V  S  D  D  P  F  T  E  N  P  C  C  G  I  E  D  P  *  D  F  H  A  S  T  *  F  Y  Y  D  *  R  K  D  Y  Q  L  D  E  N  *  R  *  *  T  S  *  R  *  I  S  C  C  C  *  I  G  *  S  *  Y  G  C  *  I  F  L  *  W  V  S  C  *  Y  H  C  T  *  R  *  F  C  T  C  W  F  S  N  C  S  S  C  *  I  *  R  *  N  F  T  C  *  I  E  N  S  D  I  H  F  Y  F  *  S  S  C  Y  C  *  C  N  *  R  G  F  N  G  S  S  C  G  C  G  P  G  Y  G  Y  V  I  F  *  C  C  A  C  E  N  G  V  V  D  S  P  S  I  R  R  G  E  E  S  G  G  F  T  V  C  *  E  I  G  *  G  I  G  V  G  F  E  G  S  G  G  Q  R  A  *  W  E  D  C  G  K  G  C  *  S  S  S  W  F  C  S  Y  W  C  C  C  S  G  E  A  K  W  W  C  T  S  G  P  S  S  R  I  G  D  D  C  A  I  Y  D  N  A  E  C  G  E  S  K  Y  G  G  E  F  G  S  S  N  F  *  S  G  V  Y  Y  Y  Y  *  C  P  *  C  S  L  Q  E   : G  Q  V  E  R  S  D  N  D  S  I  V  G  K  S  H  S  T  C  I  G  A  T  S  C  C  E  L  *  L  *  R  W  E  E  F  H  I  *  Q  *  Y  *  H  C  C  C  S  R  H  R  W  W  L  D  Y  S  C  T  S  G  C  *  Q   : G  *  F  I  L  I  V  K  E  M  E  G  V  G  *  *  G  P  G  *  A  T  S  T  P  *  I  H  H  R :   H  F  Y  P  I  Q  P  W  N  V  W  R  *  P  F  *  C  H  L  T  T  R  N   : W  C  N  Y  G  C  W  S  I  S  T  H  T  C  W  N  Q  R  W  S  N  W  H  E  K  P  N  A   : G  Q  C  H  C  *  S  S  G  N  I  W  C  *  F  G  G  F  P  A  N  L  S  T  D  N  *  G  S  *  R  P  Y  S  L  G  S  C  P  Q  L  W  E  I  R  C  F  V  V  *  F  A  R  V  S  A  R  S  F  M  E  *  T  E  T  I  C  Y  N  I  *  S  I  I  *  V  T  L  Q  K  M  N  V  Y  G  W  L  G  H  F  F  A  W  L  I  F  F  F  Y  W  S  V  N  S  *  G  H  F  S  W  L  P  *  N  Y  G  L  K  M  S  S  L  L  L  H  H  S  N  I  V  A  T  F  Y  *  F  Y  F  *  G  C  S  A  I  S  V  V  S  A  V  H  Y  C  H  Y  K  :  K  N  T  *   </first_frame>
            <second_frame>  P  P  V  M  *  L  K  S  P  P  S  F  S  F  D  A  F  E  K  S  I  S  I  E  K  H  T  N  L  R  F  S  F  H  H  Y  *  N  H  S  I  F  L  D  L  F  A  K  M  S  H  L  L  Q  S  T  F  I  P  T  T  P  T  T  L  R  R  R  S  V  F  P  T  T  H  L  R  K  T  H  V  V  E  S  K  I  R  E  I  F  M  P  A  L  S  S  T  M  T  E  G  K  I  I  S  W  M  K  T  E  G  D  K  L  A  K  G  E  S  V  V  V  V  E  S  D  K  A  D  M  D  V  E  S  F  Y  D  G  Y  L  A  S  I  I  V  P  E  G  S  S  A  P  V  G  S  P  I  A  L  L  A  E  S  E  D  E  I  S  L  A  K  S  K  T  P  T  S  T  S  T  S  S  P  A  A  T  A  S  V  T  E  E  V  S  T  V  A  A  A  V  A  V  P  V  T  A  T  S  S  S  D  A  A  P  V  K  M  A  S  S  I  H  P  A  S  E  G  G  K  R  V  V  A  S  P  Y  A  K  K  L  A  K  E  L  G  L  D  L  R  G  V  V  G  S  G  P  N  G  R  I  V  A  K  D  V  E  A  A  A  G  S  A  P  I  G  V  A  A  A  A  K  P  S  G  G  A  P  A  A  P  A  V  E  L  G  T  T  V  P  F  T  T  M  Q  S  A  V  S  R  N  M  V  E  S  L  A  V  P  T  F  R  V  G  Y  T  I  T  T  N  A  L  D  A  L  Y  K  K  :  V  K  S  K  G  V  T  M  T  A  L  L  A  K  A  T  A  L  A  L  V  Q  H  P  V  V  N  S  S  C  R  D  G  K  S  F  T  Y  N  S  S  I  N  I  A  V  A  V  A  I  D  G  G  L  I  T  P  V  L  Q  D  A  D  K  :  V  D  L  Y  S  L  S  R  K  W  K  E  L  V  D  K  A  R  A  K  Q  L  Q  P  H  E  Y  T  T   : G  T  F  T  L  S  N  L  G  M  F  G  V  D  R  F  D  A  I  L  P  P  G  T  :  G  A  I  M  A  V  G  A  S  Q  P  T  L  V  G  T  K  D  G  R  I  G  M  K  N  Q  M  Q  :  V  N  V  T  A  D  H  R  V  I  Y  G  A  D  L  A  A  F  L  Q  T  L  A  Q  I  I  E  D  P  K  D  L  T  L  *  A  L  V  L  N  C  G  R  L  D  V  L  *  C  N  L  L  E  F  Q  P  G  A  S  W  S  E  Q  K  P  Y  A  I  T  S  E  A  S  S  K  S  H  F  R  R  *  M  F  M  D  G  *  V  I  F  S  R  G  *  S  F  F  F  I  G  V  *  T  H  E  D  I  F  H  G  C  H  K  I  M  A  S  R  *  A  L  C  C  F  I  I  Q  I  L  L  Q  L  S  I  D  S  I  F  K  G  V  L  Q  F  Q  L  Y  L  Q  F  T  I  A  I  T  K :   K  T  P  K  </second_frame>
            <third_frame>   H  R  *  C  S  *  S  L  R  P  H  S  L  S  M  H  S  R  N  P  F  L  *  K  N  T  Q  T  Y  A  F  L  F  T  I  I  K  I  I  R  F  F  L  I  C  S  Q  K  C  L  I  F  F  N  P  P  S  S  P  P  H  P  L  P  S  V  A  V  L  C  F  R  R  P  I  Y  G  K  P  M  L  W  N  R  R  S  V  R  F  S  C  Q  H  L  V  L  L  *  L  K  E  R  L  S  V  G  *  K  L  K  V  I  N  *  L  K  V  N  Q  L  L  L  L  N  R  I  K  L  I  W  M  L  N  L  F  M  M  G  I  L  L  V  S  L  Y  L  K  V  V  L  H  L  L  V  L  Q  L  L  F  L  L  N  L  K  M  K  F  H  L  L  N  R  K  L  R  H  P  L  L  L  L  V  Q  L  L  L  L  V  *  L  K  R  F  Q  R  *  Q  L  R  L  R  S  R  L  R  L  R  H  L  L  M  L  R  L  *  K  W  R  R  R  F  T  Q  H  Q  K  G  G  R  E  W  W  L  H  R  M  L  R  N  W  L  R  N  W  G  W  I  *  G  E  W  W  A  A  G  L  M  G  G  L  W  Q  R  M  L  K  Q  Q  L  V  L  L  L  L  V  L  L  Q  R  R  S  Q  V  V  V  H  Q  R  P  Q  Q  *  N  W  G  R  L  C  H  L  R  Q  C  R  V  R  *  V  E  I  W  W  R  V  W  Q  F  Q  L  L  E  W  G  I  L  L  L  L  M  P  L  M  L  S  T  R  R :   S  S  R  K  E  *  Q  *  Q  H  C  W  Q  K  P  Q  H  L  H  W  C  N  I  L  L  *  T  L  V  V  E  M  G  R  V  S  H  I  T  V  V  L  T  L  L  L  Q  S  P  *  M  V  A  *  L  L  L  Y  F  R  M  L  T  R :   L  I  Y  T  H  C  Q  G  N  G  R  S  W  L  I  R  P  G  L  S  N  F  N  P  M  N  T  P  Q  :  A  L  L  P  Y  P  T  L  E  C  L  A  L  T  V  L  M  P  S  Y  H  Q  E  L :   V  Q  L  W  L  L  E  H  L  N  P  H  L  L  E  P  K  M  V  E  L  A  *  K  T  K  C  R :   S  M  S  L  L  I  I  G  *  Y  M  V  L  I  W  R  L  S  C  K  P  *  H  R  *  L  R  I  L  K  T  L  L  F  R  L  L  S  S  I  V  G  D  *  M  F  C  S  V  I  C  S  S  F  S  Q  E  L  H  G  V  N  R  N  H  M  L  *  H  L  K  H  H  L  S  H  T  S  E  D  E  C  L  W  M  V  R  S  F  F  R  V  V  N  L  F  F  L  L  E  C  K  L  M  R  T  F  F  M  A  A  I  K  L  W  P  Q  D  E  L  F  V  A  S  S  F  K  Y  C  C  N  F  L  L  I  L  F  L  R  V  F  C  N  F  S  C  I  C  S  S  L  L  P  L  Q   : K  K  H  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37630" stop="38529"/>
                    <exon start="38813" stop="39004"/>
                    <exon start="39083" stop="39170"/>
                    <exon start="43652" stop="43722"/>
                    <exon start="43806" stop="43889"/>
                    <exon start="44019" stop="44123"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1437</number_coding_nucleotides>
                  <number_encoded_amino_acids>479</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHSIFLDLFAKMSHLLQSTFIPTTPTTLRRRSVFPTTHLRKTHVVESKIREIFMPALSSTMTEGKIISWMKTEGDKLAKGESVVVVESDKADMDVESFYDGYLASIIVPEGSSAPVGSPIALLAESEDEISLAKSKTPTSTSTSSPAATASVTEEVSTVAAAVAVPVTATSSSDAAPVKMASSIHPASEGGKRVVASPYAKKLAKELGLDLRGVVGSGPNGRIVAKDVEAAAGSAPIGVAAAAKPSGGAPAAPAVELGTTVPFTTMQSAVSRNMVESLAVPTFRVGYTITTNALDALYKKVKSKGVTMTALLAKATALALVQHPVVNSSCRDGKSFTYNSSINIAVAVAIDGGLITPVLQDADKVDLYSLSRKWKELVDKARAKQLQPHEYTTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASQPTLVGTKDGRIGMKNQMQVNVTADHRVIYGADLAAFLQTLAQIIEDPKDLTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44224" stop="44485"/>
                    <exon start="44542" stop="44555"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLKHHLSHTSEDECLWMVRSFFRVVNLFFLLECKLMRTFFMAAIKLWPQDELFVASSFKYCCNFLLILFLRVFCNFSCICSSLLPLQKKHLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37518" e_stop="38529"/>
            <exon e_start="38813" e_stop="39004"/>
            <exon e_start="39083" e_stop="39170"/>
            <exon e_start="43652" e_stop="43722"/>
            <exon e_start="43806" e_stop="43889"/>
            <exon e_start="44019" e_stop="44486"/>
            <exon e_start="44542" e_stop="44550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.956"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.954" e_score="0.994"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="37518" e_stop="38529" e_length="1012"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38530" i_stop="38812" i_length="283"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38813" e_stop="39004" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="39005" i_stop="39082" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39083" e_stop="39170" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="39171" i_stop="43651" i_length="4481"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43652" e_stop="43722" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43723" i_stop="43805" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43806" e_stop="43889" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43890" i_stop="44018" i_length="129"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="44019" e_stop="44486" e_length="468"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="44487" i_stop="44541" i_length="55"/>
          </intron>
          <exon e_serial="7" e_score="0.750">
            <gDNA_exon_boundary e_start="44542" e_stop="44550" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37518" stop="37847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37524" stop="38190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37529" stop="38121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37535" stop="38241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37549" stop="37859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37581" stop="38281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37586" stop="38176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37638" stop="38121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37659" stop="38021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37661" stop="38409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38302" stop="38529"/>
              <exon start="38813" stop="39004"/>
              <exon start="39083" stop="39170"/>
              <exon start="43652" stop="43722"/>
              <exon start="43806" stop="43889"/>
              <exon start="44019" stop="44165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38307" stop="38529"/>
              <exon start="38813" stop="39004"/>
              <exon start="39083" stop="39170"/>
              <exon start="43652" stop="43722"/>
              <exon start="43806" stop="43817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38437" stop="38529"/>
              <exon start="38813" stop="39004"/>
              <exon start="39083" stop="39170"/>
              <exon start="43652" stop="43722"/>
              <exon start="43806" stop="43889"/>
              <exon start="44019" stop="44138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38833" stop="39004"/>
              <exon start="39083" stop="39170"/>
              <exon start="43652" stop="43722"/>
              <exon start="43806" stop="43889"/>
              <exon start="44019" stop="44255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38898" stop="39004"/>
              <exon start="39083" stop="39170"/>
              <exon start="43652" stop="43722"/>
              <exon start="43806" stop="43889"/>
              <exon start="44019" stop="44486"/>
              <exon start="44542" stop="44550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44025" stop="44486"/>
              <exon start="44542" stop="44549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716770" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCACCGGTAATGTAGTTGAAGTCTCCGCCCTCATTCTCTTTCGATGCATTCGAGAAATCCATTTCTATAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAGGTTTCAACGGTAGCAGCTGCGGTTGCGGTCCCGGTTACGGCTACGTCATCTTCTGATGCTGCGCCTGTGAAAATGGCGTCGTCGATTCACCCAGCATCAGAAGGGGGGAAGAGAGTGGTGGCTTCACCGTATGCTAAGAAATTGGCTAAGGAATTGGGGTTGGATTTGAGGGGAGTGGTGGGCAGCGGGCCTAATGGGAGGATTGTGGCAAAGGATGTTGAAGCAGCAGCTGGTTCTGCTCCTATTGGTGTTGCTGCAGCGGCGAAGCCAAGTGGTGGTGCACCAGCGGCCCCAGCAGTAGAATTGGGGACGACTGTGCCATTTACGACAATGCAGAGTGCGGTGAGTCGAAATATGGTGGAGAGTTTGGCAGTTCCAACTTTTAGAGTGGGGTATACTATTACTACTAATGCCCTTGATGCTCTCTACAAGAAG : GTCAAGTCGAAAGGAGTGACAATGACAGCATTGTTGGCAAAAGCCACAGCACTTGCATTGGTGCAACATCCTGTTGTGAACTCTAGTTGTAGAGATGGGAAGAGTTTCACATATAACAGTAGTATTAACATTGCTGTTGCAGTCGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAG : GTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAG : GCACTTTTACCCTATCCAACCTTGGAATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCACCAGGAACT : GGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAG : GTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTACAAAA : AAAAACACC</gDNA_template>
            <first_frame> S  T  G  N  V  V  E  V  S  A  L  I  L  F  R  C  I  R  E  I  H  F  Y  R  K  T  H  K  P  T  L  F  F  S  P  L  L  K  S  F  D  F  S  *  F  V  R  K  N  V  S  S  S  S  I  H  L  H  P  H  H  T  H  Y  P  P  S  P  F  C  V  S  D  D  P  F  T  E  N  P  C  C  G  I  E  D  P  *  D  F  H  A  S  T  *  F  Y  Y  D  *  R  K  D  Y  Q  L  D  E  N  *  R  *  *  T  S  *  R  *  I  S  C  C  C  *  I  G  *  S  *  Y  G  C  *  I  F  L  *  W  V  S  C  *  Y  H  C  T  *  R  *  F  C  T  C  W  F  S  N  C  S  S  C  *  I  *  R  *  N  F  T  C  *  I  E  N  S  D  I  H  F  Y  F  *  S  S  C  Y  C  *  C  N  *  R  G  F  N  G  S  S  C  G  C  G  P  G  Y  G  Y  V  I  F  *  C  C  A  C  E  N  G  V  V  D  S  P  S  I  R  R  G  E  E  S  G  G  F  T  V  C  *  E  I  G  *  G  I  G  V  G  F  E  G  S  G  G  Q  R  A  *  W  E  D  C  G  K  G  C  *  S  S  S  W  F  C  S  Y  W  C  C  C  S  G  E  A  K  W  W  C  T  S  G  P  S  S  R  I  G  D  D  C  A  I  Y  D  N  A  E  C  G  E  S  K  Y  G  G  E  F  G  S  S  N  F  *  S  G  V  Y  Y  Y  Y  *  C  P  *  C  S  L  Q  E   : G  Q  V  E  R  S  D  N  D  S  I  V  G  K  S  H  S  T  C  I  G  A  T  S  C  C  E  L  *  L  *  R  W  E  E  F  H  I  *  Q  *  Y  *  H  C  C  C  S  R  H  R  W  W  L  D  Y  S  C  T  S  G  C  *  Q   : G  *  F  I  L  I  V  K  E  M  E  G  V  G  *  *  G  P  G  *  A  T  S  T  P  *  I  H  H  R :   H  F  Y  P  I  Q  P  W  N  V  W  R  *  P  F  *  C  H  L  T  T  R  N   : W  C  N  Y  G  C  W  S  I  S  T  H  T  C  W  N  Q  R  W  S  N  W  H  E  K  P  N  A   : G  Q  C  H  C  *  S  S  G  N  I  W  C  *  F  G  G  F  P  A  N  L  S  T  D  N  *  G  S  *  R  P  Y  S  L  G  S  C  P  Q  L  W  E  I  R  C  F  V  V  *  F  A  R  V  S  A  R  S  F  M  E  *  T  E  T  I  C  Y  N  I  *  S  I  I  *  V  T  L  Q  K  M  N  V  Y  G  W  L  G  H  F  F  A  W  L  I  F  F  F  Y  W  S  V  N  S  *  G  H  F  S  W  L  P  *  N  Y  G  L  K  M  S  S  L  L  L  H  H  S  N  I  V  A  T  F  Y  *  F  Y  F  *  G  C  S  A  I  S  V  V  S  A  V  H  Y  C  H  Y  K   : K  K  H  </first_frame>
            <second_frame>  P  P  V  M  *  L  K  S  P  P  S  F  S  F  D  A  F  E  K  S  I  S  I  E  K  H  T  N  L  R  F  S  F  H  H  Y  *  N  H  S  I  F  L  D  L  F  A  K  M  S  H  L  L  Q  S  T  F  I  P  T  T  P  T  T  L  R  R  R  S  V  F  P  T  T  H  L  R  K  T  H  V  V  E  S  K  I  R  E  I  F  M  P  A  L  S  S  T  M  T  E  G  K  I  I  S  W  M  K  T  E  G  D  K  L  A  K  G  E  S  V  V  V  V  E  S  D  K  A  D  M  D  V  E  S  F  Y  D  G  Y  L  A  S  I  I  V  P  E  G  S  S  A  P  V  G  S  P  I  A  L  L  A  E  S  E  D  E  I  S  L  A  K  S  K  T  P  T  S  T  S  T  S  S  P  A  A  T  A  S  V  T  E  E  V  S  T  V  A  A  A  V  A  V  P  V  T  A  T  S  S  S  D  A  A  P  V  K  M  A  S  S  I  H  P  A  S  E  G  G  K  R  V  V  A  S  P  Y  A  K  K  L  A  K  E  L  G  L  D  L  R  G  V  V  G  S  G  P  N  G  R  I  V  A  K  D  V  E  A  A  A  G  S  A  P  I  G  V  A  A  A  A  K  P  S  G  G  A  P  A  A  P  A  V  E  L  G  T  T  V  P  F  T  T  M  Q  S  A  V  S  R  N  M  V  E  S  L  A  V  P  T  F  R  V  G  Y  T  I  T  T  N  A  L  D  A  L  Y  K  K  :  V  K  S  K  G  V  T  M  T  A  L  L  A  K  A  T  A  L  A  L  V  Q  H  P  V  V  N  S  S  C  R  D  G  K  S  F  T  Y  N  S  S  I  N  I  A  V  A  V  A  I  D  G  G  L  I  T  P  V  L  Q  D  A  D  K  :  V  D  L  Y  S  L  S  R  K  W  K  E  L  V  D  K  A  R  A  K  Q  L  Q  P  H  E  Y  T  T   : G  T  F  T  L  S  N  L  G  M  F  G  V  D  R  F  D  A  I  L  P  P  G  T  :  G  A  I  M  A  V  G  A  S  Q  P  T  L  V  G  T  K  D  G  R  I  G  M  K  N  Q  M  Q  :  V  N  V  T  A  D  H  R  V  I  Y  G  A  D  L  A  A  F  L  Q  T  L  A  Q  I  I  E  D  P  K  D  L  T  L  *  A  L  V  L  N  C  G  R  L  D  V  L  *  C  N  L  L  E  F  Q  P  G  A  S  W  S  E  Q  K  P  Y  A  I  T  S  E  A  S  S  K  S  H  F  R  R  *  M  F  M  D  G  *  V  I  F  S  R  G  *  S  F  F  F  I  G  V  *  T  H  E  D  I  F  H  G  C  H  K  I  M  A  S  R  *  A  L  C  C  F  I  I  Q  I  L  L  Q  L  S  I  D  S  I  F  K  G  V  L  Q  F  Q  L  Y  L  Q  F  T  I  A  I  T  K  :  K  N  T </second_frame>
            <third_frame>   H  R  *  C  S  *  S  L  R  P  H  S  L  S  M  H  S  R  N  P  F  L  *  K  N  T  Q  T  Y  A  F  L  F  T  I  I  K  I  I  R  F  F  L  I  C  S  Q  K  C  L  I  F  F  N  P  P  S  S  P  P  H  P  L  P  S  V  A  V  L  C  F  R  R  P  I  Y  G  K  P  M  L  W  N  R  R  S  V  R  F  S  C  Q  H  L  V  L  L  *  L  K  E  R  L  S  V  G  *  K  L  K  V  I  N  *  L  K  V  N  Q  L  L  L  L  N  R  I  K  L  I  W  M  L  N  L  F  M  M  G  I  L  L  V  S  L  Y  L  K  V  V  L  H  L  L  V  L  Q  L  L  F  L  L  N  L  K  M  K  F  H  L  L  N  R  K  L  R  H  P  L  L  L  L  V  Q  L  L  L  L  V  *  L  K  R  F  Q  R  *  Q  L  R  L  R  S  R  L  R  L  R  H  L  L  M  L  R  L  *  K  W  R  R  R  F  T  Q  H  Q  K  G  G  R  E  W  W  L  H  R  M  L  R  N  W  L  R  N  W  G  W  I  *  G  E  W  W  A  A  G  L  M  G  G  L  W  Q  R  M  L  K  Q  Q  L  V  L  L  L  L  V  L  L  Q  R  R  S  Q  V  V  V  H  Q  R  P  Q  Q  *  N  W  G  R  L  C  H  L  R  Q  C  R  V  R  *  V  E  I  W  W  R  V  W  Q  F  Q  L  L  E  W  G  I  L  L  L  L  M  P  L  M  L  S  T  R  R :   S  S  R  K  E  *  Q  *  Q  H  C  W  Q  K  P  Q  H  L  H  W  C  N  I  L  L  *  T  L  V  V  E  M  G  R  V  S  H  I  T  V  V  L  T  L  L  L  Q  S  P  *  M  V  A  *  L  L  L  Y  F  R  M  L  T  R :   L  I  Y  T  H  C  Q  G  N  G  R  S  W  L  I  R  P  G  L  S  N  F  N  P  M  N  T  P  Q  :  A  L  L  P  Y  P  T  L  E  C  L  A  L  T  V  L  M  P  S  Y  H  Q  E  L :   V  Q  L  W  L  L  E  H  L  N  P  H  L  L  E  P  K  M  V  E  L  A  *  K  T  K  C  R :   S  M  S  L  L  I  I  G  *  Y  M  V  L  I  W  R  L  S  C  K  P  *  H  R  *  L  R  I  L  K  T  L  L  F  R  L  L  S  S  I  V  G  D  *  M  F  C  S  V  I  C  S  S  F  S  Q  E  L  H  G  V  N  R  N  H  M  L  *  H  L  K  H  H  L  S  H  T  S  E  D  E  C  L  W  M  V  R  S  F  F  R  V  V  N  L  F  F  L  L  E  C  K  L  M  R  T  F  F  M  A  A  I  K  L  W  P  Q  D  E  L  F  V  A  S  S  F  K  Y  C  C  N  F  L  L  I  L  F  L  R  V  F  C  N  F  S  C  I  C  S  S  L  L  P  L  Q  K :   K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37630" stop="38529"/>
                    <exon start="38813" stop="39004"/>
                    <exon start="39083" stop="39170"/>
                    <exon start="43652" stop="43722"/>
                    <exon start="43806" stop="43889"/>
                    <exon start="44019" stop="44123"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1437</number_coding_nucleotides>
                  <number_encoded_amino_acids>479</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHSIFLDLFAKMSHLLQSTFIPTTPTTLRRRSVFPTTHLRKTHVVESKIREIFMPALSSTMTEGKIISWMKTEGDKLAKGESVVVVESDKADMDVESFYDGYLASIIVPEGSSAPVGSPIALLAESEDEISLAKSKTPTSTSTSSPAATASVTEEVSTVAAAVAVPVTATSSSDAAPVKMASSIHPASEGGKRVVASPYAKKLAKELGLDLRGVVGSGPNGRIVAKDVEAAAGSAPIGVAAAAKPSGGAPAAPAVELGTTVPFTTMQSAVSRNMVESLAVPTFRVGYTITTNALDALYKKVKSKGVTMTALLAKATALALVQHPVVNSSCRDGKSFTYNSSINIAVAVAIDGGLITPVLQDADKVDLYSLSRKWKELVDKARAKQLQPHEYTTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASQPTLVGTKDGRIGMKNQMQVNVTADHRVIYGADLAAFLQTLAQIIEDPKDLTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44224" stop="44486"/>
                    <exon start="44542" stop="44548"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLKHHLSHTSEDECLWMVRSFFRVVNLFFLLECKLMRTFFMAAIKLWPQDELFVASSFKYCCNFLLILFLRVFCNFSCICSSLLPLQKKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="43796" e_stop="43889"/>
            <exon e_start="44019" e_stop="44485"/>
            <exon e_start="44542" e_stop="44548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.954" e_score="0.998"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43796" e_stop="43889" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43890" i_stop="44018" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="44019" e_stop="44485" e_length="467"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="44486" i_stop="44541" i_length="56"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="44542" e_stop="44548" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43796" stop="43889"/>
              <exon start="44019" stop="44485"/>
              <exon start="44542" stop="44548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43796" stop="43889"/>
              <exon start="44019" stop="44485"/>
              <exon start="44542" stop="44548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTGTCTAGGGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAG : GTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTACAAA : AAAAACA</gDNA_template>
            <first_frame> S  C  L  G  C  N  Y  G  C  W  S  I  S  T  H  T  C  W  N  Q  R  W  S  N  W  H  E  K  P  N  A   : G  Q  C  H  C  *  S  S  G  N  I  W  C  *  F  G  G  F  P  A  N  L  S  T  D  N  *  G  S  *  R  P  Y  S  L  G  S  C  P  Q  L  W  E  I  R  C  F  V  V  *  F  A  R  V  S  A  R  S  F  M  E  *  T  E  T  I  C  Y  N  I  *  S  I  I  *  V  T  L  Q  K  M  N  V  Y  G  W  L  G  H  F  F  A  W  L  I  F  F  F  Y  W  S  V  N  S  *  G  H  F  S  W  L  P  *  N  Y  G  L  K  M  S  S  L  L  L  H  H  S  N  I  V  A  T  F  Y  *  F  Y  F  *  G  C  S  A  I  S  V  V  S  A  V  H  Y  C  H  Y  K  :  K  N  </first_frame>
            <second_frame>  L  V  *  G  A  I  M  A  V  G  A  S  Q  P  T  L  V  G  T  K  D  G  R  I  G  M  K  N  Q  M  Q  :  V  N  V  T  A  D  H  R  V  I  Y  G  A  D  L  A  A  F  L  Q  T  L  A  Q  I  I  E  D  P  K  D  L  T  L  *  A  L  V  L  N  C  G  R  L  D  V  L  *  C  N  L  L  E  F  Q  P  G  A  S  W  S  E  Q  K  P  Y  A  I  T  S  E  A  S  S  K  S  H  F  R  R  *  M  F  M  D  G  *  V  I  F  S  R  G  *  S  F  F  F  I  G  V  *  T  H  E  D  I  F  H  G  C  H  K  I  M  A  S  R  *  A  L  C  C  F  I  I  Q  I  L  L  Q  L  S  I  D  S  I  F  K  G  V  L  Q  F  Q  L  Y  L  Q  F  T  I  A  I  T  K :   K  T </second_frame>
            <third_frame>   L  S  R  V  Q  L  W  L  L  E  H  L  N  P  H  L  L  E  P  K  M  V  E  L  A  *  K  T  K  C  R :   S  M  S  L  L  I  I  G  *  Y  M  V  L  I  W  R  L  S  C  K  P  *  H  R  *  L  R  I  L  K  T  L  L  F  R  L  L  S  S  I  V  G  D  *  M  F  C  S  V  I  C  S  S  F  S  Q  E  L  H  G  V  N  R  N  H  M  L  *  H  L  K  H  H  L  S  H  T  S  E  D  E  C  L  W  M  V  R  S  F  F  R  V  V  N  L  F  F  L  L  E  C  K  L  M  R  T  F  F  M  A  A  I  K  L  W  P  Q  D  E  L  F  V  A  S  S  F  K  Y  C  C  N  F  L  L  I  L  F  L  R  V  F  C  N  F  S  C  I  C  S  S  L  L  P  L  Q   : K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44224" stop="44485"/>
                    <exon start="44542" stop="44546"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLKHHLSHTSEDECLWMVRSFFRVVNLFFLLECKLMRTFFMAAIKLWPQDELFVASSFKYCCNFLLILFLRVFCNFSCICSSLLPLQKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="43795" e_stop="43889"/>
            <exon e_start="44019" e_stop="44491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43795" e_stop="43889" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43890" i_stop="44018" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="44019" e_stop="44491" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43795" stop="43889"/>
              <exon start="44019" stop="44491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373770" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTGTCTAGGGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAG : GTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTACAAAATGACT</gDNA_template>
            <first_frame> L  L  S  R  V  Q  L  W  L  L  E  H  L  N  P  H  L  L  E  P  K  M  V  E  L  A  *  K  T  K  C  R :   S  M  S  L  L  I  I  G  *  Y  M  V  L  I  W  R  L  S  C  K  P  *  H  R  *  L  R  I  L  K  T  L  L  F  R  L  L  S  S  I  V  G  D  *  M  F  C  S  V  I  C  S  S  F  S  Q  E  L  H  G  V  N  R  N  H  M  L  *  H  L  K  H  H  L  S  H  T  S  E  D  E  C  L  W  M  V  R  S  F  F  R  V  V  N  L  F  F  L  L  E  C  K  L  M  R  T  F  F  M  A  A  I  K  L  W  P  Q  D  E  L  F  V  A  S  S  F  K  Y  C  C  N  F  L  L  I  L  F  L  R  V  F  C  N  F  S  C  I  C  S  S  L  L  P  L  Q  N  D  </first_frame>
            <second_frame>  S  C  L  G  C  N  Y  G  C  W  S  I  S  T  H  T  C  W  N  Q  R  W  S  N  W  H  E  K  P  N  A   : G  Q  C  H  C  *  S  S  G  N  I  W  C  *  F  G  G  F  P  A  N  L  S  T  D  N  *  G  S  *  R  P  Y  S  L  G  S  C  P  Q  L  W  E  I  R  C  F  V  V  *  F  A  R  V  S  A  R  S  F  M  E  *  T  E  T  I  C  Y  N  I  *  S  I  I  *  V  T  L  Q  K  M  N  V  Y  G  W  L  G  H  F  F  A  W  L  I  F  F  F  Y  W  S  V  N  S  *  G  H  F  S  W  L  P  *  N  Y  G  L  K  M  S  S  L  L  L  H  H  S  N  I  V  A  T  F  Y  *  F  Y  F  *  G  C  S  A  I  S  V  V  S  A  V  H  Y  C  H  Y  K  M  T </second_frame>
            <third_frame>   L  V  *  G  A  I  M  A  V  G  A  S  Q  P  T  L  V  G  T  K  D  G  R  I  G  M  K  N  Q  M  Q  :  V  N  V  T  A  D  H  R  V  I  Y  G  A  D  L  A  A  F  L  Q  T  L  A  Q  I  I  E  D  P  K  D  L  T  L  *  A  L  V  L  N  C  G  R  L  D  V  L  *  C  N  L  L  E  F  Q  P  G  A  S  W  S  E  Q  K  P  Y  A  I  T  S  E  A  S  S  K  S  H  F  R  R  *  M  F  M  D  G  *  V  I  F  S  R  G  *  S  F  F  F  I  G  V  *  T  H  E  D  I  F  H  G  C  H  K  I  M  A  S  R  *  A  L  C  C  F  I  I  Q  I  L  L  Q  L  S  I  D  S  I  F  K  G  V  L  Q  F  Q  L  Y  L  Q  F  T  I  A  I  T  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44224" stop="44490"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLKHHLSHTSEDECLWMVRSFFRVVNLFFLLECKLMRTFFMAAIKLWPQDELFVASSFKYCCNFLLILFLRVFCNFSCICSSLLPLQND</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44478" PGL_stop="44020"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44478" e_stop="44020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="44478" e_stop="44020" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44478" stop="44181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44408" stop="44020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265080" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCAATAGTGAACTGCAGATACAACTGAAATTGCAGAACACCCTTAAAAATAGAATCAATAGAAAGTTGCAACAATATTTGAATGATGAAGCAACAAAGAGCTCATCTTGAGGCCATAATTTTATGGCAGCCATGAAAAATGTCCTCATGAGTTTACACTCCAATAAAAAAAAAAGATTAACCACGCGAAAAAATGACCTAACCATCCATAAACATTCATCTTCTGAAGTGTGACTTAGATGATGCTTCAGATGTTATAGCATATGGTTTCTGTTCACTCCATGAAGCTCCTGGCTGAAACTCGAGCAAATTACACTACAAAACATCTAATCTCCCACAATTGAGGACAAGAGCCTAAAGAGTAAGGTCTTTAGGATCCTCAATTATCTGTGCTAAGGTTTGCAGGAAAGCCGCCAAATCAGCACCATATATTACCCGATGATCAGCAGTGACATTGA</gDNA_template>
            <first_frame> W  Q  *  *  T  A  D  T  T  E  I  A  E  H  P  *  K  *  N  Q  *  K  V  A  T  I  F  E  *  *  S  N  K  E  L  I  L  R  P  *  F  Y  G  S  H  E  K  C  P  H  E  F  T  L  Q  *  K  K  K  I  N  H  A  K  K  *  P  N  H  P  *  T  F  I  F  *  S  V  T  *  M  M  L  Q  M  L  *  H  M  V  S  V  H  S  M  K  L  L  A  E  T  R  A  N  Y  T  T  K  H  L  I  S  H  N  *  G  Q  E  P  K  E  *  G  L  *  D  P  Q  L  S  V  L  R  F  A  G  K  P  P  N  Q  H  H  I  L  P  D  D  Q  Q  *  H  * </first_frame>
            <second_frame>  G  N  S  E  L  Q  I  Q  L  K  L  Q  N  T  L  K  N  R  I  N  R  K  L  Q  Q  Y  L  N  D  E  A  T  K  S  S  S  *  G  H  N  F  M  A  A  M  K  N  V  L  M  S  L  H  S  N  K  K  K  R  L  T  T  R  K  N  D  L  T  I  H  K  H  S  S  S  E  V  *  L  R  *  C  F  R  C  Y  S  I  W  F  L  F  T  P  *  S  S  W  L  K  L  E  Q  I  T  L  Q  N  I  *  S  P  T  I  E  D  K  S  L  K  S  K  V  F  R  I  L  N  Y  L  C  *  G  L  Q  E  S  R  Q  I  S  T  I  Y  Y  P  M  I  S  S  D  I   </second_frame>
            <third_frame>   A  I  V  N  C  R  Y  N  *  N  C  R  T  P  L  K  I  E  S  I  E  S  C  N  N  I  *  M  M  K  Q  Q  R  A  H  L  E  A  I  I  L  W  Q  P  *  K  M  S  S  *  V  Y  T  P  I  K  K  K  D  *  P  R  E  K  M  T  *  P  S  I  N  I  H  L  L  K  C  D  L  D  D  A  S  D  V  I  A  Y  G  F  C  S  L  H  E  A  P  G  *  N  S  S  K  L  H  Y  K  T  S  N  L  P  Q  L  R  T  R  A  *  R  V  R  S  L  G  S  S  I  I  C  A  K  V  C  R  K  A  A  K  S  A  P  Y  I  T  R  *  S  A  V  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0291F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="59487" PGL_stop="60316"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59487" e_stop="60316"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="59487" e_stop="60316" e_length="830"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59487" stop="60144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59556" stop="60316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGTTTTTAACTCTCTTAACTCCGCAGGAGCCATTCTATAAGGGGGTATAGAAATGGGCGAGTACCTGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATTTGCAGGGAACACATCCCGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAATGTAATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTAAAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTACCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCAGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCACTAGCAAATGAGGACGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATAAGAT</gDNA_template>
            <first_frame> S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  W  V  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  E  Y  L  V  Q  G  Q  Y  R  N  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  *  C  N  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  *  N  P  R  S  Q  I  A  E  K  A  K  S  Y  L  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  Y  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  T  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  K   </first_frame>
            <second_frame>  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  T  T  L  E  V  G  F  L  T  L  L  T  P  Q  E  P  F  Y  K  G  V  *  K  W  A  S  T  W  F  K  V  N  T  E  I  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  P  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  N  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  Q  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  K  I  Q  D  R  K  L  R  R  K  P  S  H  T  *  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  T  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  Q  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  T  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  </second_frame>
            <third_frame>   N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  *  Q  L  L  K  L  G  F  *  L  S  *  L  R  R  S  H  S  I  R  G  Y  R  N  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  F  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  M  *  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  R  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  K  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  R  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  D  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  *  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0291F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="67883" PGL_stop="68361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67883" e_stop="68361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="67883" e_stop="68361" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67883" stop="68361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206529" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAGGCCTGGTGGTGAATTTCAGGGATTACCCATTCCCGAGTGGAAGTGGGATCGCATTACTATGGATTTTGTGGCTGGTCTACCGAGGACTTCTAGAGGATTTGATAGTATTTGGGTCATCGTTGATCGATTGACCAAGTCAGCACATTTCCTTCCCGTTCAATCTTCATTTAGTGCCGAGAGGTTGGCTCGTATCTACATTTGAGAGGTGGTTCGACTTCATGGGGTGCCAGTTTCTATTATATCAGATCGGGGTTCTTAGTTCACGTCTAGCTTTTGGAGGACCTTTCAGGATGAGTTGGGCACCCGGGTTGACCTGAGCACAGCTTTCCACCCGCAGACTGATGGTCAGTCAGAGTGCACTATTCAGGTCCTTGAGGACATGCTACGGGCTTGTGTTTTGGAGTTTGGTGGTCAATGGGACCAGTTCTTGCCTTTGGCAGAATTTGCATATAACAACAGCTACCATTCTAGCA</gDNA_template>
            <first_frame> F  E  A  W  W  *  I  S  G  I  T  H  S  R  V  E  V  G  S  H  Y  Y  G  F  C  G  W  S  T  E  D  F  *  R  I  *  *  Y  L  G  H  R  *  S  I  D  Q  V  S  T  F  P  S  R  S  I  F  I  *  C  R  E  V  G  S  Y  L  H  L  R  G  G  S  T  S  W  G  A  S  F  Y  Y  I  R  S  G  F  L  V  H  V  *  L  L  E  D  L  S  G  *  V  G  H  P  G  *  P  E  H  S  F  P  P  A  D  *  W  S  V  R  V  H  Y  S  G  P  *  G  H  A  T  G  L  C  F  G  V  W  W  S  M  G  P  V  L  A  F  G  R  I  C  I  *  Q  Q  L  P  F  *   </first_frame>
            <second_frame>  L  R  P  G  G  E  F  Q  G  L  P  I  P  E  W  K  W  D  R  I  T  M  D  F  V  A  G  L  P  R  T  S  R  G  F  D  S  I  W  V  I  V  D  R  L  T  K  S  A  H  F  L  P  V  Q  S  S  F  S  A  E  R  L  A  R  I  Y  I  *  E  V  V  R  L  H  G  V  P  V  S  I  I  S  D  R  G  S  *  F  T  S  S  F  W  R  T  F  Q  D  E  L  G  T  R  V  D  L  S  T  A  F  H  P  Q  T  D  G  Q  S  E  C  T  I  Q  V  L  E  D  M  L  R  A  C  V  L  E  F  G  G  Q  W  D  Q  F  L  P  L  A  E  F  A  Y  N  N  S  Y  H  S  S  </second_frame>
            <third_frame>   *  G  L  V  V  N  F  R  D  Y  P  F  P  S  G  S  G  I  A  L  L  W  I  L  W  L  V  Y  R  G  L  L  E  D  L  I  V  F  G  S  S  L  I  D  *  P  S  Q  H  I  S  F  P  F  N  L  H  L  V  P  R  G  W  L  V  S  T  F  E  R  W  F  D  F  M  G  C  Q  F  L  L  Y  Q  I  G  V  L  S  S  R  L  A  F  G  G  P  F  R  M  S  W  A  P  G  L  T  *  A  Q  L  S  T  R  R  L  M  V  S  Q  S  A  L  F  R  S  L  R  T  C  Y  G  L  V  F  W  S  L  V  V  N  G  T  S  S  C  L  W  Q  N  L  H  I  T  T  A  T  I  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68148" stop="68360"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTSSFWRTFQDELGTRVDLSTAFHPQTDGQSECTIQVLEDMLRACVLEFGGQWDQFLPLAEFAYNNSYHSS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67884" stop="68090"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRPGGEFQGLPIPEWKWDRITMDFVAGLPRTSRGFDSIWVIVDRLTKSAHFLPVQSSFSAERLARIYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="77163" PGL_stop="77818"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77163" e_stop="77818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="77163" e_stop="77818" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77163" stop="77818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGATTAATCAGGTTCTTACTTATCTTAGTGGGCTATCTGATTAGGGCCATACACCTCCAGTGTTTTCTGCACCAGCTCCTCAGGTTCAAAGAGTAAAACATGCAGCTGCTGTGGCTCTCCGCATGGATGCATCATTGGAAGTAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACAGGTGATCAACATGAACTTTTCATTAAGTTCTTAAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAAGATGCCTATGATTTTATGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATTCGGTGTTGAGTTTGTGACCTATCAGTTTCAGGGGGATGCCATAATATGGAAGCGGTCATATGTTGAGTGTCAACCAGCACAGGCACCACCCATGACTTGGGCATCATTTTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTAGAGCAAGGAAGGATGTCTGTTGCTGCTTATGAGACCAAATTTCGTGCACTATCCAGGTATGCCACTCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGCTTTGTGAAAGGATTGAGATCAGATTTTCAGATCCCAGCCTTACACGTAGCT</gDNA_template>
            <first_frame> R  *  L  I  R  F  L  L  I  L  V  G  Y  L  I  R  A  I  H  L  Q  C  F  L  H  Q  L  L  R  F  K  E  *  N  M  Q  L  L  W  L  S  A  W  M  H  H  W  K  *  A  R  F  L  D  *  L  Q  G  L  *  *  Q  V  I  N  M  N  F  S  L  S  S  *  S  *  N  L  Q  S  S  R  V  L  N  L  K  M  P  M  I  L  W  L  I  V  M  S  C  Y  I  R  W  T  *  *  N  D  S  V  L  S  L  *  P  I  S  F  R  G  M  P  *  Y  G  S  G  H  M  L  S  V  N  Q  H  R  H  H  P  *  L  G  H  H  F  L  A  Y  L  W  R  S  I  Y  P  G  L  *  G  I  G  G  E  M  S  S  *  A  *  S  K  E  G  C  L  L  L  L  M  R  P  N  F  V  H  Y  P  G  M  P  L  S  F  A  S  V  H  K  S  G  F  A  A  L  *  K  D  *  D  Q  I  F  R  S  Q  P  Y  T  *   </first_frame>
            <second_frame>  D  D  *  S  G  S  Y  L  S  *  W  A  I  *  L  G  P  Y  T  S  S  V  F  C  T  S  S  S  G  S  K  S  K  T  C  S  C  C  G  S  P  H  G  C  I  I  G  S  R  H  V  S  S  I  D  Y  R  V  Y  N  D  R  *  S  T  *  T  F  H  *  V  L  K  V  E  T  S  S  L  Q  G  C  *  I  *  R  C  L  *  F  Y  G  *  L  S  *  A  A  T  *  D  G  H  S  R  T  I  R  C  *  V  C  D  L  S  V  S  G  G  C  H  N  M  E  A  V  I  C  *  V  S  T  S  T  G  T  T  H  D  L  G  I  I  F  *  L  I  Y  G  E  V  Y  T  P  D  F  E  G  *  E  E  R  *  V  P  E  P  R  A  R  K  D  V  C  C  C  L  *  D  Q  I  S  C  T  I  Q  V  C  H  S  A  L  L  Q  S  T  R  A  D  S  P  L  C  E  R  I  E  I  R  F  S  D  P  S  L  T  R  S  </second_frame>
            <third_frame>   M  I  N  Q  V  L  T  Y  L  S  G  L  S  D  *  G  H  T  P  P  V  F  S  A  P  A  P  Q  V  Q  R  V  K  H  A  A  A  V  A  L  R  M  D  A  S  L  E  V  G  T  F  P  R  L  T  T  G  S  I  M  T  G  D  Q  H  E  L  F  I  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  M  V  D  C  H  E  L  L  H  K  M  D  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  D  A  I  I  W  K  R  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  R  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  A  A  Y  E  T  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  D  F  Q  I  P  A  L  H  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77210" stop="77818"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GHTPPVFSAPAPQVQRVKHAAAVALRMDASLEVGTFPRLTTGSIMTGDQHELFIKFLKLKPPVFKGAESEDAYDFMVDCHELLHKMDIVERFGVEFVTYQFQGDAIIWKRSYVECQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFLSLEQGRMSVAAYETKFRALSRYATQLCFSPQERIRRFVKGLRSDFQIPALHVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="96865" PGL_stop="86080"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96865" e_stop="95198"/>
            <exon e_start="94878" e_stop="94264"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.937" e_score="0.995"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="96865" e_stop="95198" e_length="1668"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.937">
            <gDNA_intron_boundary i_start="95197" i_stop="94879" i_length="319"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="94878" e_stop="94264" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96865" stop="96205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96430" stop="95864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96369" stop="95641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96168" stop="95741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95826" stop="95198"/>
              <exon start="94878" stop="94856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95678" stop="95198"/>
              <exon start="94878" stop="94507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95668" stop="95226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95667" stop="95198"/>
              <exon start="94878" stop="94684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95667" stop="95243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95330" stop="95198"/>
              <exon start="94878" stop="94326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95289" stop="95198"/>
              <exon start="94878" stop="94276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94878" stop="94264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94766" stop="94264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94765" stop="94265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94765" stop="94273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGACCTCAGTTTTAACACATTAAATGGTACAATTCCTCAGGACCTCTTATTCCCAATGAACTTGCAGTTTGTTGATCTCACTTCCAATAAGTTAGAGGGACCTGTTCCTTCAAACATGTCGATAAATCTGATCAGGTTGAGATTGGGGCAAAATGCTTTGAGTGGGTCATTTCCATCTGCTTCTTTTGAAAGCCTTCAAAGTTTGACCTACTTGGAACTGGACAACAACCAGTTAACTGGACCAATTCCTTCTGAATTGGGGAAGTGCCAAAAGTTGGCCCTTTTGAACTTAGCTCAGAATAAGCTGAGTGGTGTAATTCCTGTTGAGTTGGGTGATATGTCTAATCTTCAGGTACTGAGTCTTCAATCCAATAACCTAGTTGGAGAAATCCCAAGTAATATCTCACAGTTGAACAGATTGCAGAAACTCAATTTCAGCTCGAATTCGTTGACTGGTTCCATACCAAGTTCATTATCAAGTTTGAGAAGTCTCACAAACTTGAATTTGCAGGGGAATAAACTAAGCGGTCGAATTCCGGTTGACATTAGTAACTTAAATGTGCTGTTAGAACTCCAACTTGGAGGGAACCAACTCAGTGGGCCTATTCCTGATATGCCATTGAGTTTACAGATTGCTTTGAATCTGAGTCACAATCTTTTTCAAGGACCTATACCAAGTAGTTTTTCTAGATTGACTTCATTGGAAGTTTTGGATCTCTCTTACAACAGGTTCTCGGGTCAGATTCCAGAGTACCTGGCCGGAATGAAAGGCTTGACTAGGTTGGTGCTTTCAAACAATCAACTGTCTGGAGTTGTTCCAAAGTTTGGAAGTTTTGTCATTGTTGATACAGATGGAAATGGGGTTCTGATCTATCCTTCACCAGTTGCTCCACCACAAGCTGCTGCAAAAAAGAGAAAATCAATAGTTGTTGCAGTTGTTGTCCCAATTGCAGGTGTAGCAACAATTGCCATTTTCGTGGTGATTGCTATTTCAATCTCTAGAAGATATTACAGGATCAATGATGAACATTTTCACTCAGGAGTACAAATTTCTCAATCCCCTGTCGTTCAGGGAAAGGTTTTAACTGCAAACAGCATTCACAAGTCAAATATAGACTTCACAAAGGCCATGGTAGCAGTGTCTGAGCCCTCAAATGTTGTGTTCAAGACAAGATTTTCAACCTACTATAAAGCTGTTATGCCGTCGGGTACAACCTATTTTGTCAAGAAGCTTAATTGGAGTGACAAAATATTTCAGTTGGGAAGCCATGAACTATTTGGGGAAGAGTTAAGAAATATTGGAAAGCTGAATAATTCGAATGTCATGATTCCACTAGGCTATCTTTTGGCTGCTGATAGTGCTTACCTCTTCTACGAATTTGCCCCCATTGGCTCGTTATATGATGTTCTTCGTGGTAGCTTGGGCTACTCGTTAGATTGGGCAAGTCGCTACAGCATAGCTATTGGAGTAGCTCAGGGTTTAGCTTTTCTTCATGGATGTGACAAGGGTCCAATCCTCCTCCTCGACCTTTCCAGCAAGAGCATTCTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTTGCTGGTTCTGTCGGTTATATTCCTCCAG : AATATGCATACACAATGAGAGTCACAATGGCTGGAAATGTATATAGCTTTGGGGTCGTTCTGCTGGAATTGTTGACAGGAAGGCCTGCAGTTAGTCAGGGAACCGAGTTAGCCAAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATATATCATATCATATTATATTATAAGTGGGTAGCCTCTACTTCAAAAGTTGAATTACAAAA</gDNA_template>
            <first_frame> W  T  S  V  L  T  H  *  M  V  Q  F  L  R  T  S  Y  S  Q  *  T  C  S  L  L  I  S  L  P  I  S  *  R  D  L  F  L  Q  T  C  R  *  I  *  S  G  *  D  W  G  K  M  L  *  V  G  H  F  H  L  L  L  L  K  A  F  K  V  *  P  T  W  N  W  T  T  T  S  *  L  D  Q  F  L  L  N  W  G  S  A  K  S  W  P  F  *  T  *  L  R  I  S  *  V  V  *  F  L  L  S  W  V  I  C  L  I  F  R  Y  *  V  F  N  P  I  T  *  L  E  K  S  Q  V  I  S  H  S  *  T  D  C  R  N  S  I  S  A  R  I  R  *  L  V  P  Y  Q  V  H  Y  Q  V  *  E  V  S  Q  T  *  I  C  R  G  I  N  *  A  V  E  F  R  L  T  L  V  T  *  M  C  C  *  N  S  N  L  E  G  T  N  S  V  G  L  F  L  I  C  H  *  V  Y  R  L  L  *  I  *  V  T  I  F  F  K  D  L  Y  Q  V  V  F  L  D  *  L  H  W  K  F  W  I  S  L  T  T  G  S  R  V  R  F  Q  S  T  W  P  E  *  K  A  *  L  G  W  C  F  Q  T  I  N  C  L  E  L  F  Q  S  L  E  V  L  S  L  L  I  Q  M  E  M  G  F  *  S  I  L  H  Q  L  L  H  H  K  L  L  Q  K  R  E  N  Q  *  L  L  Q  L  L  S  Q  L  Q  V  *  Q  Q  L  P  F  S  W  *  L  L  F  Q  S  L  E  D  I  T  G  S  M  M  N  I  F  T  Q  E  Y  K  F  L  N  P  L  S  F  R  E  R  F  *  L  Q  T  A  F  T  S  Q  I  *  T  S  Q  R  P  W  *  Q  C  L  S  P  Q  M  L  C  S  R  Q  D  F  Q  P  T  I  K  L  L  C  R  R  V  Q  P  I  L  S  R  S  L  I  G  V  T  K  Y  F  S  W  E  A  M  N  Y  L  G  K  S  *  E  I  L  E  S  *  I  I  R  M  S  *  F  H  *  A  I  F  W  L  L  I  V  L  T  S  S  T  N  L  P  P  L  A  R  Y  M  M  F  F  V  V  A  W  A  T  R  *  I  G  Q  V  A  T  A  *  L  L  E  *  L  R  V  *  L  F  F  M  D  V  T  R  V  Q  S  S  S  S  T  F  P  A  R  A  F  S  *  S  P  R  M  R  L  R  *  E  T  L  N  S  T  R  *  W  I  L  R  R  A  Q  A  A  F  L  L  L  L  V  L  S  V  I  F  L  Q  :  N  M  H  T  Q  *  E  S  Q  W  L  E  M  Y  I  A  L  G  S  F  C  W  N  C  *  Q  E  G  L  Q  L  V  R  E  P  S  *  P  S  Q  C  *  A  T  L  R  S  T  A  S  G  I  T  F  W  I  L  A  F  L  R  H  R  S  T  L  G  A  R  C  *  Q  S  S  N  W  L  *  L  V  S  V  Y  H  Q  K  A  G  Q  R  *  R  V  C  F  E  C  F  S  M  Q  G  N  R  T  S  K  E  K  V  K  E  K  T  A  K  I  V  F  F  F  F  F  W  G  G  A  V  S  G  E  G  V  V  I  Y  A  E  Y  A  S  F  V  S  L  Y  I  L  Y  *  C  K  H  I  D  I  *  *  *  *  L  H  N  F  E  Y  D  V  S  S  Q  C  N  I  V  H  F  S  C  S  C  V  I  I  Y  I  S  Y  H  I  I  L  *  V  G  S  L  Y  F  K  S  *  I  T  K </first_frame>
            <second_frame>  G  P  Q  F  *  H  I  K  W  Y  N  S  S  G  P  L  I  P  N  E  L  A  V  C  *  S  H  F  Q  *  V  R  G  T  C  S  F  K  H  V  D  K  S  D  Q  V  E  I  G  A  K  C  F  E  W  V  I  S  I  C  F  F  *  K  P  S  K  F  D  L  L  G  T  G  Q  Q  P  V  N  W  T  N  S  F  *  I  G  E  V  P  K  V  G  P  F  E  L  S  S  E  *  A  E  W  C  N  S  C  *  V  G  *  Y  V  *  S  S  G  T  E  S  S  I  Q  *  P  S  W  R  N  P  K  *  Y  L  T  V  E  Q  I  A  E  T  Q  F  Q  L  E  F  V  D  W  F  H  T  K  F  I  I  K  F  E  K  S  H  K  L  E  F  A  G  E  *  T  K  R  S  N  S  G  *  H  *  *  L  K  C  A  V  R  T  P  T  W  R  E  P  T  Q  W  A  Y  S  *  Y  A  I  E  F  T  D  C  F  E  S  E  S  Q  S  F  S  R  T  Y  T  K  *  F  F  *  I  D  F  I  G  S  F  G  S  L  L  Q  Q  V  L  G  S  D  S  R  V  P  G  R  N  E  R  L  D  *  V  G  A  F  K  Q  S  T  V  W  S  C  S  K  V  W  K  F  C  H  C  *  Y  R  W  K  W  G  S  D  L  S  F  T  S  C  S  T  T  S  C  C  K  K  E  K  I  N  S  C  C  S  C  C  P  N  C  R  C  S  N  N  C  H  F  R  G  D  C  Y  F  N  L  *  K  I  L  Q  D  Q  *  *  T  F  S  L  R  S  T  N  F  S  I  P  C  R  S  G  K  G  F  N  C  K  Q  H  S  Q  V  K  Y  R  L  H  K  G  H  G  S  S  V  *  A  L  K  C  C  V  Q  D  K  I  F  N  L  L  *  S  C  Y  A  V  G  Y  N  L  F  C  Q  E  A  *  L  E  *  Q  N  I  S  V  G  K  P  *  T  I  W  G  R  V  K  K  Y  W  K  A  E  *  F  E  C  H  D  S  T  R  L  S  F  G  C  *  *  C  L  P  L  L  R  I  C  P  H  W  L  V  I  *  C  S  S  W  *  L  G  L  L  V  R  L  G  K  S  L  Q  H  S  Y  W  S  S  S  G  F  S  F  S  S  W  M  *  Q  G  S  N  P  P  P  R  P  F  Q  Q  E  H  S  L  E  V  P  E  *  G  S  D  R  R  H  *  T  L  Q  G  D  G  S  F  E  E  H  R  Q  L  F  C  C  C  W  F  C  R  L  Y  S  S  R :   I  C  I  H  N  E  S  H  N  G  W  K  C  I  *  L  W  G  R  S  A  G  I  V  D  R  K  A  C  S  *  S  G  N  R  V  S  Q  V  S  A  E  Q  L  *  E  A  Q  Q  V  G  S  H  S  G  F  *  H  F  *  G  I  A  Q  R  *  E  P  D  V  S  S  P  Q  I  G  S  S  L  C  Q  C  I  T  R  R  P  A  K  D  E  E  C  A  S  S  A  S  P  C  K  V  I  V  R  Q  R  R  K  S  R  R  K  Q  P  R  L  F  S  S  F  S  F  G  E  E  L  *  V  V  K  V  L  *  S  M  Q  N  M  P  V  L  S  V  Y  T  Y  Y  I  N  V  N  I  *  I  Y  D  D  S  S  Y  I  T  L  N  M  M  L  V  L  S  V  T  *  S  I  F  L  V  H  V  *  S  Y  I  Y  H  I  I  L  Y  Y  K  W  V  A  S  T  S  K  V  E  L  Q   </second_frame>
            <third_frame>   D  L  S  F  N  T  L  N  G  T  I  P  Q  D  L  L  F  P  M  N  L  Q  F  V  D  L  T  S  N  K  L  E  G  P  V  P  S  N  M  S  I  N  L  I  R  L  R  L  G  Q  N  A  L  S  G  S  F  P  S  A  S  F  E  S  L  Q  S  L  T  Y  L  E  L  D  N  N  Q  L  T  G  P  I  P  S  E  L  G  K  C  Q  K  L  A  L  L  N  L  A  Q  N  K  L  S  G  V  I  P  V  E  L  G  D  M  S  N  L  Q  V  L  S  L  Q  S  N  N  L  V  G  E  I  P  S  N  I  S  Q  L  N  R  L  Q  K  L  N  F  S  S  N  S  L  T  G  S  I  P  S  S  L  S  S  L  R  S  L  T  N  L  N  L  Q  G  N  K  L  S  G  R  I  P  V  D  I  S  N  L  N  V  L  L  E  L  Q  L  G  G  N  Q  L  S  G  P  I  P  D  M  P  L  S  L  Q  I  A  L  N  L  S  H  N  L  F  Q  G  P  I  P  S  S  F  S  R  L  T  S  L  E  V  L  D  L  S  Y  N  R  F  S  G  Q  I  P  E  Y  L  A  G  M  K  G  L  T  R  L  V  L  S  N  N  Q  L  S  G  V  V  P  K  F  G  S  F  V  I  V  D  T  D  G  N  G  V  L  I  Y  P  S  P  V  A  P  P  Q  A  A  A  K  K  R  K  S  I  V  V  A  V  V  V  P  I  A  G  V  A  T  I  A  I  F  V  V  I  A  I  S  I  S  R  R  Y  Y  R  I  N  D  E  H  F  H  S  G  V  Q  I  S  Q  S  P  V  V  Q  G  K  V  L  T  A  N  S  I  H  K  S  N  I  D  F  T  K  A  M  V  A  V  S  E  P  S  N  V  V  F  K  T  R  F  S  T  Y  Y  K  A  V  M  P  S  G  T  T  Y  F  V  K  K  L  N  W  S  D  K  I  F  Q  L  G  S  H  E  L  F  G  E  E  L  R  N  I  G  K  L  N  N  S  N  V  M  I  P  L  G  Y  L  L  A  A  D  S  A  Y  L  F  Y  E  F  A  P  I  G  S  L  Y  D  V  L  R  G  S  L  G  Y  S  L  D  W  A  S  R  Y  S  I  A  I  G  V  A  Q  G  L  A  F  L  H  G  C  D  K  G  P  I  L  L  L  D  L  S  S  K  S  I  L  L  K  S  Q  N  E  A  Q  I  G  D  I  E  L  Y  K  V  M  D  P  S  K  S  T  G  S  F  S  A  V  A  G  S  V  G  Y  I  P  P   : E  Y  A  Y  T  M  R  V  T  M  A  G  N  V  Y  S  F  G  V  V  L  L  E  L  L  T  G  R  P  A  V  S  Q  G  T  E  L  A  K  S  V  L  S  N  S  E  K  H  S  K  W  D  H  I  L  D  S  S  I  S  K  A  S  L  N  V  R  S  Q  M  L  A  V  L  K  L  A  L  A  C  V  S  V  S  P  E  G  R  P  K  M  K  S  V  L  R  V  L  L  H  A  R  *  S  Y  V  K  G  E  S  Q  G  E  N  S  Q  D  C  F  L  L  F  L  L  G  R  S  C  K  W  *  R  C  C  D  L  C  R  I  C  Q  F  C  Q  F  I  H  I  I  L  M  *  T  Y  R  Y  M  M  I  V  A  T  *  L  *  I  *  C  *  F  S  V  *  H  S  P  F  F  L  F  M  C  N  H  I  Y  I  I  S  Y  Y  I  I  S  G  *  P  L  L  Q  K  L  N  Y  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96863" stop="95198"/>
                    <exon start="94878" stop="94571"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1971</number_coding_nucleotides>
                  <number_encoded_amino_acids>657</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLSFNTLNGTIPQDLLFPMNLQFVDLTSNKLEGPVPSNMSINLIRLRLGQNALSGSFPSASFESLQSLTYLELDNNQLTGPIPSELGKCQKLALLNLAQNKLSGVIPVELGDMSNLQVLSLQSNNLVGEIPSNISQLNRLQKLNFSSNSLTGSIPSSLSSLRSLTNLNLQGNKLSGRIPVDISNLNVLLELQLGGNQLSGPIPDMPLSLQIALNLSHNLFQGPIPSSFSRLTSLEVLDLSYNRFSGQIPEYLAGMKGLTRLVLSNNQLSGVVPKFGSFVIVDTDGNGVLIYPSPVAPPQAAAKKRKSIVVAVVVPIAGVATIAIFVVIAISISRRYYRINDEHFHSGVQISQSPVVQGKVLTANSIHKSNIDFTKAMVAVSEPSNVVFKTRFSTYYKAVMPSGTTYFVKKLNWSDKIFQLGSHELFGEELRNIGKLNNSNVMIPLGYLLAADSAYLFYEFAPIGSLYDVLRGSLGYSLDWASRYSIAIGVAQGLAFLHGCDKGPILLLDLSSKSILLKSQNEAQIGDIELYKVMDPSKSTGSFSAVAGSVGYIPPEYAYTMRVTMAGNVYSFGVVLLELLTGRPAVSQGTELAKSVLSNSEKHSKWDHILDSSISKASLNVRSQMLAVLKLALACVSVSPEGRPKMKSVLRVLLHAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96865" e_stop="95198"/>
            <exon e_start="94878" e_stop="94322"/>
            <exon e_start="93391" e_stop="93347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.937" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.957" e_score="0.995"/>
          <exon-only e_score="0.578"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="96865" e_stop="95198" e_length="1668"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.937">
            <gDNA_intron_boundary i_start="95197" i_stop="94879" i_length="319"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="94878" e_stop="94322" e_length="557"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.957">
            <gDNA_intron_boundary i_start="94321" i_stop="93392" i_length="930"/>
          </intron>
          <exon e_serial="3" e_score="0.578">
            <gDNA_exon_boundary e_start="93391" e_stop="93347" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96865" stop="96205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96430" stop="95864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96369" stop="95641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96168" stop="95741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95826" stop="95198"/>
              <exon start="94878" stop="94856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95678" stop="95198"/>
              <exon start="94878" stop="94507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95668" stop="95226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95667" stop="95198"/>
              <exon start="94878" stop="94684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95667" stop="95243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95330" stop="95198"/>
              <exon start="94878" stop="94326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94667" stop="94322"/>
              <exon start="93391" stop="93347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610986" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGACCTCAGTTTTAACACATTAAATGGTACAATTCCTCAGGACCTCTTATTCCCAATGAACTTGCAGTTTGTTGATCTCACTTCCAATAAGTTAGAGGGACCTGTTCCTTCAAACATGTCGATAAATCTGATCAGGTTGAGATTGGGGCAAAATGCTTTGAGTGGGTCATTTCCATCTGCTTCTTTTGAAAGCCTTCAAAGTTTGACCTACTTGGAACTGGACAACAACCAGTTAACTGGACCAATTCCTTCTGAATTGGGGAAGTGCCAAAAGTTGGCCCTTTTGAACTTAGCTCAGAATAAGCTGAGTGGTGTAATTCCTGTTGAGTTGGGTGATATGTCTAATCTTCAGGTACTGAGTCTTCAATCCAATAACCTAGTTGGAGAAATCCCAAGTAATATCTCACAGTTGAACAGATTGCAGAAACTCAATTTCAGCTCGAATTCGTTGACTGGTTCCATACCAAGTTCATTATCAAGTTTGAGAAGTCTCACAAACTTGAATTTGCAGGGGAATAAACTAAGCGGTCGAATTCCGGTTGACATTAGTAACTTAAATGTGCTGTTAGAACTCCAACTTGGAGGGAACCAACTCAGTGGGCCTATTCCTGATATGCCATTGAGTTTACAGATTGCTTTGAATCTGAGTCACAATCTTTTTCAAGGACCTATACCAAGTAGTTTTTCTAGATTGACTTCATTGGAAGTTTTGGATCTCTCTTACAACAGGTTCTCGGGTCAGATTCCAGAGTACCTGGCCGGAATGAAAGGCTTGACTAGGTTGGTGCTTTCAAACAATCAACTGTCTGGAGTTGTTCCAAAGTTTGGAAGTTTTGTCATTGTTGATACAGATGGAAATGGGGTTCTGATCTATCCTTCACCAGTTGCTCCACCACAAGCTGCTGCAAAAAAGAGAAAATCAATAGTTGTTGCAGTTGTTGTCCCAATTGCAGGTGTAGCAACAATTGCCATTTTCGTGGTGATTGCTATTTCAATCTCTAGAAGATATTACAGGATCAATGATGAACATTTTCACTCAGGAGTACAAATTTCTCAATCCCCTGTCGTTCAGGGAAAGGTTTTAACTGCAAACAGCATTCACAAGTCAAATATAGACTTCACAAAGGCCATGGTAGCAGTGTCTGAGCCCTCAAATGTTGTGTTCAAGACAAGATTTTCAACCTACTATAAAGCTGTTATGCCGTCGGGTACAACCTATTTTGTCAAGAAGCTTAATTGGAGTGACAAAATATTTCAGTTGGGAAGCCATGAACTATTTGGGGAAGAGTTAAGAAATATTGGAAAGCTGAATAATTCGAATGTCATGATTCCACTAGGCTATCTTTTGGCTGCTGATAGTGCTTACCTCTTCTACGAATTTGCCCCCATTGGCTCGTTATATGATGTTCTTCGTGGTAGCTTGGGCTACTCGTTAGATTGGGCAAGTCGCTACAGCATAGCTATTGGAGTAGCTCAGGGTTTAGCTTTTCTTCATGGATGTGACAAGGGTCCAATCCTCCTCCTCGACCTTTCCAGCAAGAGCATTCTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTTGCTGGTTCTGTCGGTTATATTCCTCCAG : AATATGCATACACAATGAGAGTCACAATGGCTGGAAATGTATATAGCTTTGGGGTCGTTCTGCTGGAATTGTTGACAGGAAGGCCTGCAGTTAGTCAGGGAACCGAGTTAGCCAAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATAT : GGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGA</gDNA_template>
            <first_frame> W  T  S  V  L  T  H  *  M  V  Q  F  L  R  T  S  Y  S  Q  *  T  C  S  L  L  I  S  L  P  I  S  *  R  D  L  F  L  Q  T  C  R  *  I  *  S  G  *  D  W  G  K  M  L  *  V  G  H  F  H  L  L  L  L  K  A  F  K  V  *  P  T  W  N  W  T  T  T  S  *  L  D  Q  F  L  L  N  W  G  S  A  K  S  W  P  F  *  T  *  L  R  I  S  *  V  V  *  F  L  L  S  W  V  I  C  L  I  F  R  Y  *  V  F  N  P  I  T  *  L  E  K  S  Q  V  I  S  H  S  *  T  D  C  R  N  S  I  S  A  R  I  R  *  L  V  P  Y  Q  V  H  Y  Q  V  *  E  V  S  Q  T  *  I  C  R  G  I  N  *  A  V  E  F  R  L  T  L  V  T  *  M  C  C  *  N  S  N  L  E  G  T  N  S  V  G  L  F  L  I  C  H  *  V  Y  R  L  L  *  I  *  V  T  I  F  F  K  D  L  Y  Q  V  V  F  L  D  *  L  H  W  K  F  W  I  S  L  T  T  G  S  R  V  R  F  Q  S  T  W  P  E  *  K  A  *  L  G  W  C  F  Q  T  I  N  C  L  E  L  F  Q  S  L  E  V  L  S  L  L  I  Q  M  E  M  G  F  *  S  I  L  H  Q  L  L  H  H  K  L  L  Q  K  R  E  N  Q  *  L  L  Q  L  L  S  Q  L  Q  V  *  Q  Q  L  P  F  S  W  *  L  L  F  Q  S  L  E  D  I  T  G  S  M  M  N  I  F  T  Q  E  Y  K  F  L  N  P  L  S  F  R  E  R  F  *  L  Q  T  A  F  T  S  Q  I  *  T  S  Q  R  P  W  *  Q  C  L  S  P  Q  M  L  C  S  R  Q  D  F  Q  P  T  I  K  L  L  C  R  R  V  Q  P  I  L  S  R  S  L  I  G  V  T  K  Y  F  S  W  E  A  M  N  Y  L  G  K  S  *  E  I  L  E  S  *  I  I  R  M  S  *  F  H  *  A  I  F  W  L  L  I  V  L  T  S  S  T  N  L  P  P  L  A  R  Y  M  M  F  F  V  V  A  W  A  T  R  *  I  G  Q  V  A  T  A  *  L  L  E  *  L  R  V  *  L  F  F  M  D  V  T  R  V  Q  S  S  S  S  T  F  P  A  R  A  F  S  *  S  P  R  M  R  L  R  *  E  T  L  N  S  T  R  *  W  I  L  R  R  A  Q  A  A  F  L  L  L  L  V  L  S  V  I  F  L  Q  :  N  M  H  T  Q  *  E  S  Q  W  L  E  M  Y  I  A  L  G  S  F  C  W  N  C  *  Q  E  G  L  Q  L  V  R  E  P  S  *  P  S  Q  C  *  A  T  L  R  S  T  A  S  G  I  T  F  W  I  L  A  F  L  R  H  R  S  T  L  G  A  R  C  *  Q  S  S  N  W  L  *  L  V  S  V  Y  H  Q  K  A  G  Q  R  *  R  V  C  F  E  C  F  S  M  Q  G  N  R  T  S  K  E  K  V  K  E  K  T  A  K  I  V  F  F  F  F  F  W  G  G  A  V  S  G  E  G  V  V  I  Y  A  E  Y  A  S  F  V  S  L  Y  I  L  Y  *  C  K  H  I  D  I  *  *  *  *  L  H  N  F  E  Y  D  V  S  S  Q  C  N  I  V  H  F  S  C  S  C  V  I  I  Y  M :   V  K  E  R  G  F  E  *  R  K  *  K  E  Q   </first_frame>
            <second_frame>  G  P  Q  F  *  H  I  K  W  Y  N  S  S  G  P  L  I  P  N  E  L  A  V  C  *  S  H  F  Q  *  V  R  G  T  C  S  F  K  H  V  D  K  S  D  Q  V  E  I  G  A  K  C  F  E  W  V  I  S  I  C  F  F  *  K  P  S  K  F  D  L  L  G  T  G  Q  Q  P  V  N  W  T  N  S  F  *  I  G  E  V  P  K  V  G  P  F  E  L  S  S  E  *  A  E  W  C  N  S  C  *  V  G  *  Y  V  *  S  S  G  T  E  S  S  I  Q  *  P  S  W  R  N  P  K  *  Y  L  T  V  E  Q  I  A  E  T  Q  F  Q  L  E  F  V  D  W  F  H  T  K  F  I  I  K  F  E  K  S  H  K  L  E  F  A  G  E  *  T  K  R  S  N  S  G  *  H  *  *  L  K  C  A  V  R  T  P  T  W  R  E  P  T  Q  W  A  Y  S  *  Y  A  I  E  F  T  D  C  F  E  S  E  S  Q  S  F  S  R  T  Y  T  K  *  F  F  *  I  D  F  I  G  S  F  G  S  L  L  Q  Q  V  L  G  S  D  S  R  V  P  G  R  N  E  R  L  D  *  V  G  A  F  K  Q  S  T  V  W  S  C  S  K  V  W  K  F  C  H  C  *  Y  R  W  K  W  G  S  D  L  S  F  T  S  C  S  T  T  S  C  C  K  K  E  K  I  N  S  C  C  S  C  C  P  N  C  R  C  S  N  N  C  H  F  R  G  D  C  Y  F  N  L  *  K  I  L  Q  D  Q  *  *  T  F  S  L  R  S  T  N  F  S  I  P  C  R  S  G  K  G  F  N  C  K  Q  H  S  Q  V  K  Y  R  L  H  K  G  H  G  S  S  V  *  A  L  K  C  C  V  Q  D  K  I  F  N  L  L  *  S  C  Y  A  V  G  Y  N  L  F  C  Q  E  A  *  L  E  *  Q  N  I  S  V  G  K  P  *  T  I  W  G  R  V  K  K  Y  W  K  A  E  *  F  E  C  H  D  S  T  R  L  S  F  G  C  *  *  C  L  P  L  L  R  I  C  P  H  W  L  V  I  *  C  S  S  W  *  L  G  L  L  V  R  L  G  K  S  L  Q  H  S  Y  W  S  S  S  G  F  S  F  S  S  W  M  *  Q  G  S  N  P  P  P  R  P  F  Q  Q  E  H  S  L  E  V  P  E  *  G  S  D  R  R  H  *  T  L  Q  G  D  G  S  F  E  E  H  R  Q  L  F  C  C  C  W  F  C  R  L  Y  S  S  R :   I  C  I  H  N  E  S  H  N  G  W  K  C  I  *  L  W  G  R  S  A  G  I  V  D  R  K  A  C  S  *  S  G  N  R  V  S  Q  V  S  A  E  Q  L  *  E  A  Q  Q  V  G  S  H  S  G  F  *  H  F  *  G  I  A  Q  R  *  E  P  D  V  S  S  P  Q  I  G  S  S  L  C  Q  C  I  T  R  R  P  A  K  D  E  E  C  A  S  S  A  S  P  C  K  V  I  V  R  Q  R  R  K  S  R  R  K  Q  P  R  L  F  S  S  F  S  F  G  E  E  L  *  V  V  K  V  L  *  S  M  Q  N  M  P  V  L  S  V  Y  T  Y  Y  I  N  V  N  I  *  I  Y  D  D  S  S  Y  I  T  L  N  M  M  L  V  L  S  V  T  *  S  I  F  L  V  H  V  *  S  Y  I   : W  *  K  K  E  G  L  N  K  E  N  R  K  N  K  </second_frame>
            <third_frame>   D  L  S  F  N  T  L  N  G  T  I  P  Q  D  L  L  F  P  M  N  L  Q  F  V  D  L  T  S  N  K  L  E  G  P  V  P  S  N  M  S  I  N  L  I  R  L  R  L  G  Q  N  A  L  S  G  S  F  P  S  A  S  F  E  S  L  Q  S  L  T  Y  L  E  L  D  N  N  Q  L  T  G  P  I  P  S  E  L  G  K  C  Q  K  L  A  L  L  N  L  A  Q  N  K  L  S  G  V  I  P  V  E  L  G  D  M  S  N  L  Q  V  L  S  L  Q  S  N  N  L  V  G  E  I  P  S  N  I  S  Q  L  N  R  L  Q  K  L  N  F  S  S  N  S  L  T  G  S  I  P  S  S  L  S  S  L  R  S  L  T  N  L  N  L  Q  G  N  K  L  S  G  R  I  P  V  D  I  S  N  L  N  V  L  L  E  L  Q  L  G  G  N  Q  L  S  G  P  I  P  D  M  P  L  S  L  Q  I  A  L  N  L  S  H  N  L  F  Q  G  P  I  P  S  S  F  S  R  L  T  S  L  E  V  L  D  L  S  Y  N  R  F  S  G  Q  I  P  E  Y  L  A  G  M  K  G  L  T  R  L  V  L  S  N  N  Q  L  S  G  V  V  P  K  F  G  S  F  V  I  V  D  T  D  G  N  G  V  L  I  Y  P  S  P  V  A  P  P  Q  A  A  A  K  K  R  K  S  I  V  V  A  V  V  V  P  I  A  G  V  A  T  I  A  I  F  V  V  I  A  I  S  I  S  R  R  Y  Y  R  I  N  D  E  H  F  H  S  G  V  Q  I  S  Q  S  P  V  V  Q  G  K  V  L  T  A  N  S  I  H  K  S  N  I  D  F  T  K  A  M  V  A  V  S  E  P  S  N  V  V  F  K  T  R  F  S  T  Y  Y  K  A  V  M  P  S  G  T  T  Y  F  V  K  K  L  N  W  S  D  K  I  F  Q  L  G  S  H  E  L  F  G  E  E  L  R  N  I  G  K  L  N  N  S  N  V  M  I  P  L  G  Y  L  L  A  A  D  S  A  Y  L  F  Y  E  F  A  P  I  G  S  L  Y  D  V  L  R  G  S  L  G  Y  S  L  D  W  A  S  R  Y  S  I  A  I  G  V  A  Q  G  L  A  F  L  H  G  C  D  K  G  P  I  L  L  L  D  L  S  S  K  S  I  L  L  K  S  Q  N  E  A  Q  I  G  D  I  E  L  Y  K  V  M  D  P  S  K  S  T  G  S  F  S  A  V  A  G  S  V  G  Y  I  P  P   : E  Y  A  Y  T  M  R  V  T  M  A  G  N  V  Y  S  F  G  V  V  L  L  E  L  L  T  G  R  P  A  V  S  Q  G  T  E  L  A  K  S  V  L  S  N  S  E  K  H  S  K  W  D  H  I  L  D  S  S  I  S  K  A  S  L  N  V  R  S  Q  M  L  A  V  L  K  L  A  L  A  C  V  S  V  S  P  E  G  R  P  K  M  K  S  V  L  R  V  L  L  H  A  R  *  S  Y  V  K  G  E  S  Q  G  E  N  S  Q  D  C  F  L  L  F  L  L  G  R  S  C  K  W  *  R  C  C  D  L  C  R  I  C  Q  F  C  Q  F  I  H  I  I  L  M  *  T  Y  R  Y  M  M  I  V  A  T  *  L  *  I  *  C  *  F  S  V  *  H  S  P  F  F  L  F  M  C  N  H  I  Y  :  G  K  R  K  R  V  *  I  K  K  I  E  R  T  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96863" stop="95198"/>
                    <exon start="94878" stop="94571"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1971</number_coding_nucleotides>
                  <number_encoded_amino_acids>657</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLSFNTLNGTIPQDLLFPMNLQFVDLTSNKLEGPVPSNMSINLIRLRLGQNALSGSFPSASFESLQSLTYLELDNNQLTGPIPSELGKCQKLALLNLAQNKLSGVIPVELGDMSNLQVLSLQSNNLVGEIPSNISQLNRLQKLNFSSNSLTGSIPSSLSSLRSLTNLNLQGNKLSGRIPVDISNLNVLLELQLGGNQLSGPIPDMPLSLQIALNLSHNLFQGPIPSSFSRLTSLEVLDLSYNRFSGQIPEYLAGMKGLTRLVLSNNQLSGVVPKFGSFVIVDTDGNGVLIYPSPVAPPQAAAKKRKSIVVAVVVPIAGVATIAIFVVIAISISRRYYRINDEHFHSGVQISQSPVVQGKVLTANSIHKSNIDFTKAMVAVSEPSNVVFKTRFSTYYKAVMPSGTTYFVKKLNWSDKIFQLGSHELFGEELRNIGKLNNSNVMIPLGYLLAADSAYLFYEFAPIGSLYDVLRGSLGYSLDWASRYSIAIGVAQGLAFLHGCDKGPILLLDLSSKSILLKSQNEAQIGDIELYKVMDPSKSTGSFSAVAGSVGYIPPEYAYTMRVTMAGNVYSFGVVLLELLTGRPAVSQGTELAKSVLSNSEKHSKWDHILDSSISKASLNVRSQMLAVLKLALACVSVSPEGRPKMKSVLRVLLHAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="93075" e_stop="92805"/>
            <exon e_start="92652" e_stop="92317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.982"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="93075" e_stop="92805" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92804" i_stop="92653" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="92652" e_stop="92317" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93075" stop="92805"/>
              <exon start="92652" stop="92409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92553" stop="92317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCAC : GTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGACCGAGGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTAATTGTA</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S   : R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  V  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  *  P  R  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  I  V  F  F  L  F  N  C  </first_frame>
            <second_frame>  L  I  Y  F  V  N  N  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  :  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  L  I  Y  P  I  *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  T  Y  C  F  L  F  *  V  D  R  G  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  L  F  S  S  C  L  I  V </second_frame>
            <third_frame>   *  S  T  L  L  I  M  M  P  W  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T :   F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  I  C  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  H  T  V  F  Y  F  E  L  T  E  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  C  F  L  L  V  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0291F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="90920" e_stop="90748"/>
            <exon e_start="90003" e_stop="89475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.908"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="90920" e_stop="90748" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90747" i_stop="90004" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="90003" e_stop="89475" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90920" stop="90748"/>
              <exon start="90003" stop="89475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAAGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAG : AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCTGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGAGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTATTCGTGCTAAGAAAATGGTTAGAAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCGAACCGGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGAGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  M  F  Q  S  T  R  A  N  S  P  V  C  E  R  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  *  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  Y  S  C  *  E  N  G  *  K  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  A  F  D  *  V  G  F  S  S  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  R  S  R  T  G  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  Q  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  R  V  F  E  C  V  *  T  T </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  L  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  E  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  I  R  A  K  K  M  V  R  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  R  V  K  R  V  K  G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  *  E  F  S  N  V  Y  R  L   </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  Y  V  S  V  H  K  S  E  F  A  G  L  *  K  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  :  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  C  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  R  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  L  F  V  L  R  K  W  L  E  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  C  L  R  L  S  R  F  Q  *  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  S  I  S  N  R  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  E  S  F  R  M  C  I  D  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90919" stop="90748"/>
                    <exon start="90003" stop="89624"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQIAATAKSFQEMVDFDVILGMTWLSLQFAILDCNAKTVTLAKPETDPLVWEGDYTSNPVRIISFIRAKKMVRKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGHTPHFYTPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="91907" e_stop="91621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="91907" e_stop="91621" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91907" stop="91621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  G  Q  T  R  N  N  *  A  S  H  W  G  C   </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  H  L  Y  F  S  L  R  G  Y  K  T  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  R  Q  E  T  T  E  P  A  T  G  A  V  </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  T  F  T  F  P  *  E  A  I  R  L  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91824" stop="91621"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAIRLLGKFHSFILSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHRPDKKQLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="93819" e_stop="93663"/>
            <exon e_start="86577" e_stop="86080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.924"/>
          <exon-only e_score="0.898"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="93819" e_stop="93663" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93662" i_stop="86578" i_length="7085"/>
          </intron>
          <exon e_serial="2" e_score="0.898">
            <gDNA_exon_boundary e_start="86577" e_stop="86080" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93819" stop="93663"/>
              <exon start="86577" stop="86080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAACAGGCTGAGGCGACGGATCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAGAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAG : GCAGGACGGACCGTCACAGATTATTCAGTGGAAATTGAGTCTCTGACCCTTGTGACGACCTGCAGGACGGACCCTCGCAGGCACGACGGACCGTCGCAGGTTGCGCAATCCCAGTCTGGGTCGGATTTCTTGATACGTTTTAAGGGACGTTTTTGACTATTCTTGCCTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTTGAACGAGAGAGAGGATCGAACGAGAGGAAAAACACAAAGCTTGGGAAATTGCTGGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATT</gDNA_template>
            <first_frame> K  K  Q  A  E  A  T  D  P  T  T  D  R  H  G  H  D  G  P  S  Q  G  L  V  S  E  H  L  E  N  L  K  L  G  T  E  N  R  L  S  E  L  R  N  G  M  A  G  R  T  V  T   : G  R  T  D  R  H  R  L  F  S  G  N  *  V  S  D  P  C  D  D  L  Q  D  G  P  S  Q  A  R  R  T  V  A  G  C  A  I  P  V  W  V  G  F  L  D  T  F  *  G  T  F  L  T  I  L  A  L  I  I  K  L  V  G  *  C  *  *  V  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  V  I  I  A  I  F  Y  S  *  L  Y  T  N  *  G  K  R  K  R  V  *  I  K  K  I  E  R  T  R  E  R  E  R  K  L  N  E  R  E  D  R  T  R  G  K  T  Q  S  L  G  N  C  W  L  D  H  E  S  S  V  E  V  G  Y  G  F  H  A  I  R  S  K  L  L  I  A  N  D  M  C  *  *  Y  </first_frame>
            <second_frame>  K  N  R  L  R  R  R  I  P  R  R  T  V  M  G  T  T  D  R  R  R  V  S  F  Q  N  T  *  K  I  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  :  A  G  R  T  V  T  D  Y  S  V  E  I  E  S  L  T  L  V  T  T  C  R  T  D  P  R  R  H  D  G  P  S  Q  V  A  Q  S  Q  S  G  S  D  F  L  I  R  F  K  G  R  F  *  L  F  L  P  *  L  *  S  *  W  V  N  V  N  K  S  N  Y  L  G  V  K  R  G  N  L  K  L  I  S  G  L  L  L  P  S  F  I  L  N  Y  I  L  I  R  V  K  E  R  G  F  E  *  R  K  *  K  E  Q  E  K  E  R  E  S  *  T  R  E  R  I  E  R  E  E  K  H  K  A  W  E  I  A  G  L  I  T  N  L  R  W  R  *  V  M  V  F  M  L  F  V  V  N  S  *  *  R  M  I  C  V  S  S  I </second_frame>
            <third_frame>   K  T  G  *  G  D  G  S  H  D  G  P  S  W  A  R  R  T  V  A  G  S  R  F  R  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R :   Q  D  G  P  S  Q  I  I  Q  W  K  L  S  L  *  P  L  *  R  P  A  G  R  T  L  A  G  T  T  D  R  R  R  L  R  N  P  S  L  G  R  I  S  *  Y  V  L  R  D  V  F  D  Y  S  C  L  N  Y  K  V  S  G  L  M  L  I  S  L  I  T  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  L  L  F  L  I  I  Y  *  L  G  *  K  K  E  G  L  N  K  E  N  R  K  N  K  R  K  R  E  K  V  E  R  E  R  G  S  N  E  R  K  N  T  K  L  G  K  L  L  A  *  S  R  I  F  G  G  G  R  L  W  F  S  C  Y  S  *  *  T  L  N  S  E  *  Y  V  L  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93725" stop="93663"/>
                    <exon start="86577" stop="86422"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWVLKIDSLNFVTEWQDGPSQAGRTVTDYSVEIESLTLVTTCRTDPRRHDGPSQVAQSQSGSDFLIRFKGRF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93819" stop="93663"/>
                    <exon start="86577" stop="86540"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKQAEATDPTTDRHGHDGPSQGLVSEHLENLKLGTENRLSELRNGMAGRTVTGRTDRHRLFSGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="86220" PGL_stop="93781"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88903" e_stop="91614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="88903" e_stop="91614" e_length="2712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88903" stop="89615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88903" stop="89498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88903" stop="89428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88974" stop="89653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88974" stop="89332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89492" stop="90153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89896" stop="90226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90103" stop="90661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90187" stop="90976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90263" stop="90960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90824" stop="91543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90827" stop="91490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91182" stop="91614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCAACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTTATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCCGGTTCGAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTTCTAACCATTTTCTTAGCACGAATAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCTCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGACACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAACATAACAATGGGCCCTATCGTTCGTCTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTATAACTCTGTTTTGGAAAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTGCAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCTTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAATCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTAGGTCCAATGAGGCCTCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGTGGAGTCACTGTCCTAGTATCAGATGGGCTAGACGCTCGTCCTCTTTCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  L  V  Y  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  L  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  P  V  R  D  R  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  L  L  K  P  T  Q  S  K  A  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  F  *  P  F  S  *  H  E  *  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  L  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  V  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  T  H  K  K  M  W  I  R  D  Q  I  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  H  N  N  G  P  Y  R  S  S  V  C  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  L  G  R  F  G  D  H  H  F  L  D  H  H  V  L  Q  N  N  G  L  C  H  D  H  L  Y  L  *  H  L  E  V  Y  N  S  V  L  E  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  H  H  *  T  H  L  P  F  E  T  F  L  M  S  M  S  G  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  L  S  Q  T  G  E  F  A  L  V  D  *  N  I  V  G  W  H  T  G  I  M  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  I  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  M  C  L  G  P  M  R  P  P  Y  E  E  P  *  W  L  H  V  V  L  L  K  P  E  V  L  A  Q  K  T  L  E  V  P  D  L  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  V  E  S  L  S  *  Y  Q  M  G  *  T  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  L  P  L  F  F </first_frame>
            <second_frame>  N  P  L  T  N  Q  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  S  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  S  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  R  F  E  I  D  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  Y  *  N  R  L  N  R  R  H  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  S  N  H  F  L  S  T  N  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  L  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  Q  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  I  S  I  A  P  H  K  S  Y  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  Y  V  K  Q  F  T  M  *  I  K  T  I  S  K  C  G  R  H  I  R  K  C  G  S  G  I  K  *  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  N  I  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  S  S  T  T  T  S  S  R  I  T  A  S  A  M  T  T  S  T  S  N  I  W  R  S  I  T  L  F  W  K  I  S  L  N  M  S  N  L  P  T  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R  W  T  P  N  C  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  F  H  K  P  A  N  S  L  L  W  T  E  T  *  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  S  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  C  A  *  V  Q  *  G  L  H  T  R  S  H  S  G  C  M  L  Y  F  *  N  R  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  W  S  H  C  P  S  I  R  W  A  R  R  S  S  S  F  P  R  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S   </second_frame>
            <third_frame>   I  P  *  Q  I  N  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  L  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  F  L  T  I  F  L  A  R  I  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  S  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  R  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  A  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  T  *  Q  W  A  L  S  F  V  C  L  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  F  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  K  Y  L  L  I  C  P  I  S  P  H  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G  G  G  P  P  T  A  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  A  P  L  N  S  P  P  F  R  N  L  F  D  V  D  V  G  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  C  G  L  K  H  S  W  V  A  Y  R  D  N  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  R  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  V  L  V  S  D  G  L  D  A  R  P  L  S  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90645" stop="91034"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APLNSPPFRNLFDVDVGVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIRSCGLKHSWVAYRDNARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGASIG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90335" stop="90589"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAVLVTTISSTTTSSRITASAMTTSTSNIWRSITLFWKISLNMSNLPTSIALSGFMHRSLREVLTGRRWTPNCSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89167" stop="89406"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNLVYQAHERSRGIRKTKRHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89640" stop="89876"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWGVCPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPFLTIFLARIKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91391" stop="91612"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWHFLILHLFSFPILPFSYYFLSRWWSHCPSIRWARRSSSFPRGRPPTTSTTAPCRCS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87422" e_stop="87598"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="87422" e_stop="87598" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87422" stop="87598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  L  P  T  L  E  S  F  S  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  F  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0291F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="86220" e_stop="86578"/>
            <exon e_start="93664" e_stop="93781"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.897"/>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.897">
            <gDNA_exon_boundary e_start="86220" e_stop="86578" e_length="359"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86579" i_stop="93663" i_length="7085"/>
          </intron>
          <exon e_serial="2" e_score="0.915">
            <gDNA_exon_boundary e_start="93664" e_stop="93781" e_length="118"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86220" stop="86578"/>
              <exon start="93664" stop="93781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTTCAACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTAAAACGTATCAAGAAATCCGACCCAGACTGGGATTGCGCAACCTGCGACGGTCCGTCGTGCCTGCGAGGGTCCGTCCTGCAGGTCGTCACAAGGGTCAGAGACTCAATTTCCACTGAATAATCTGTGACGGTCCGTCCTGCC : TGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTCTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATGA</gDNA_template>
            <first_frame> S  F  N  F  L  S  L  S  L  V  L  S  I  F  F  I  Q  T  L  F  L  L  P  *  L  V  Y  N  *  E  *  K  M  A  I  I  T  H  *  L  T  *  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  *  P  T  N  F  I  I  K  A  R  I  V  K  N  V  P  *  N  V  S  R  N  P  T  Q  T  G  I  A  Q  P  A  T  V  R  R  A  C  E  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  L  N  N  L  *  R  S  V  L  P :   V  T  V  R  P  A  I  P  L  R  S  S  E  S  R  F  S  V  P  N  F  R  F  S  K  C  S  E  T  R  P  C  D  G  P  S  C  P  * </first_frame>
            <second_frame>  R  S  T  F  S  L  F  L  L  F  F  L  F  S  L  F  K  P  S  F  F  Y  P  N  *  Y  I  I  K  N  K  R  W  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  R  Q  E  *  S  K  T  S  L  K  T  Y  Q  E  I  R  P  R  L  G  L  R  N  L  R  R  S  V  V  P  A  R  V  R  P  A  G  R  H  K  G  Q  R  L  N  F  H  *  I  I  C  D  G  P  S  C   : L  *  R  S  V  L  P  F  R  Y  E  V  Q  R  V  D  F  Q  Y  P  I  S  D  F  L  S  V  L  K  R  D  P  A  T  V  R  R  A  H   </second_frame>
            <third_frame>   V  Q  L  S  L  S  F  S  C  S  F  Y  F  L  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  H  *  L  Y  N  *  G  K  N  S  Q  K  R  P  L  K  R  I  K  K  S  D  P  D  W  D  C  A  T  C  D  G  P  S  C  L  R  G  S  V  L  Q  V  V  T  R  V  R  D  S  I  S  T  E  *  S  V  T  V  R  P  A  :  C  D  G  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  I  F  *  V  F  *  N  E  T  L  R  R  S  V  V  P  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0291F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="97764" PGL_stop="97226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97764" e_stop="97226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="97764" e_stop="97226" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97764" stop="97226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAACAAATAAAAAATGACCTTAAGGTATGCTCCCAATATAGTTATTACTATATTCTTGTCTTTTTCTCTTCAAATTGTGTTTTCCCAATTGCCCACAAATCAAATTAATGTCATGAGAAGTGTCTATGATCTGTTTCAGAATGATACTGGTGATTCTTTTGTATGGAATGGAACTGATAAAGCTTCAACCCCATGTTCTTGGAAAGGGGTTTCATGTAATTCTGATAATTCTTCCCTTACCAAAGTTACCTTTTCATTGTTCTCTATTTCTAGCTCTGAATTCTTGCCTTTTATTTGTCAAATTGGTACTTTGGAGTCTCTTGATGTTTCCCTGAACTTTTTGAGCTCTATCCCAAATGAGTTCATCACTGTTTGTGGGGGAATTAGTGGGTTGAAATTGTTGAACTTTAGTGGGAATAGATTGGAGGGTTTTTTGCCTACTTTCACTGGTTTTGGAAAGTTGGAGTCTTTAGACTTTTCTTATAATAGCTTGAAGGGAAAAGTTGACTTGCAGTTGAATGGATTGAATTCACTCA</gDNA_template>
            <first_frame> Q  K  Q  I  K  N  D  L  K  V  C  S  Q  Y  S  Y  Y  Y  I  L  V  F  F  S  S  N  C  V  F  P  I  A  H  K  S  N  *  C  H  E  K  C  L  *  S  V  S  E  *  Y  W  *  F  F  C  M  E  W  N  *  *  S  F  N  P  M  F  L  E  R  G  F  M  *  F  *  *  F  F  P  Y  Q  S  Y  L  F  I  V  L  Y  F  *  L  *  I  L  A  F  Y  L  S  N  W  Y  F  G  V  S  *  C  F  P  E  L  F  E  L  Y  P  K  *  V  H  H  C  L  W  G  N  *  W  V  E  I  V  E  L  *  W  E  *  I  G  G  F  F  A  Y  F  H  W  F  W  K  V  G  V  F  R  L  F  L  *  *  L  E  G  K  S  *  L  A  V  E  W  I  E  F  T   </first_frame>
            <second_frame>  K  N  K  *  K  M  T  L  R  Y  A  P  N  I  V  I  T  I  F  L  S  F  S  L  Q  I  V  F  S  Q  L  P  T  N  Q  I  N  V  M  R  S  V  Y  D  L  F  Q  N  D  T  G  D  S  F  V  W  N  G  T  D  K  A  S  T  P  C  S  W  K  G  V  S  C  N  S  D  N  S  S  L  T  K  V  T  F  S  L  F  S  I  S  S  S  E  F  L  P  F  I  C  Q  I  G  T  L  E  S  L  D  V  S  L  N  F  L  S  S  I  P  N  E  F  I  T  V  C  G  G  I  S  G  L  K  L  L  N  F  S  G  N  R  L  E  G  F  L  P  T  F  T  G  F  G  K  L  E  S  L  D  F  S  Y  N  S  L  K  G  K  V  D  L  Q  L  N  G  L  N  S  L  </second_frame>
            <third_frame>   K  T  N  K  K  *  P  *  G  M  L  P  I  *  L  L  L  Y  S  C  L  F  L  F  K  L  C  F  P  N  C  P  Q  I  K  L  M  S  *  E  V  S  M  I  C  F  R  M  I  L  V  I  L  L  Y  G  M  E  L  I  K  L  Q  P  H  V  L  G  K  G  F  H  V  I  L  I  I  L  P  L  P  K  L  P  F  H  C  S  L  F  L  A  L  N  S  C  L  L  F  V  K  L  V  L  W  S  L  L  M  F  P  *  T  F  *  A  L  S  Q  M  S  S  S  L  F  V  G  E  L  V  G  *  N  C  *  T  L  V  G  I  D  W  R  V  F  C  L  L  S  L  V  L  E  S  W  S  L  *  T  F  L  I  I  A  *  R  E  K  L  T  C  S  *  M  D  *  I  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97751" stop="97227"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMTLRYAPNIVITIFLSFSLQIVFSQLPTNQINVMRSVYDLFQNDTGDSFVWNGTDKASTPCSWKGVSCNSDNSSLTKVTFSLFSISSSEFLPFICQIGTLESLDVSLNFLSSIPNEFITVCGGISGLKLLNFSGNRLEGFLPTFTGFGKLESLDFSYNSLKGKVDLQLNGLNSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="108162" PGL_stop="108822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108162" e_stop="108822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="108162" e_stop="108822" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108162" stop="108822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGACCTCAGTTTTAACACATTAAATGGTACAATTCCTCAGGACCTCTTATTCCCAATGAACTTGCAGTTTGTTGATCTCACTTCCAATAAGTTTGAGGGACCTGTTCCTTCAAACATGTCGATAAATTTGATCAGGTTGAGATTGGGGCAAAATGCTTTGAATGGGTCATTTCCATCTGCTTCTTTTGAAAGCCTTCAAAGTTTGACCTACTTGGAACTGGACAACAACCAGTTAACAGGACCAATTCCTTCCGAATTGAGAAAGTGCCAAAAGTTGGCCCTTTTGAACTTAGCTCAGAATAAGCTGAGTGGTGTTATTCCTGTTGAGTTGGTTGATATGTCTAATCTTCAGGTACTGAGTCTTCAATCCAATAACCTAGTTGGAGAAATCCCAAGTAATATCTCACACTTGAACAGATTGCAGAGACTCAATTTCAGCTCGAATTCGTTGACTGGTTCCATACCAAGTTCATTATCAAGTTTGAGAAATCTCACAAACTTGAATTTGCGGGGGAATAAACTAAGTGGTCGAATTCCGGTTGACATTAGTAACTTAAATGTGCTGTTAGAACTCCAACTTGGAGGGAACCAACTCGGTGGGCCTATTCCTGATATGCCATTGAGTTTACAGATTGCTTTGAATCTGAGTCACAATCTTTT</gDNA_template>
            <first_frame> W  T  S  V  L  T  H  *  M  V  Q  F  L  R  T  S  Y  S  Q  *  T  C  S  L  L  I  S  L  P  I  S  L  R  D  L  F  L  Q  T  C  R  *  I  *  S  G  *  D  W  G  K  M  L  *  M  G  H  F  H  L  L  L  L  K  A  F  K  V  *  P  T  W  N  W  T  T  T  S  *  Q  D  Q  F  L  P  N  *  E  S  A  K  S  W  P  F  *  T  *  L  R  I  S  *  V  V  L  F  L  L  S  W  L  I  C  L  I  F  R  Y  *  V  F  N  P  I  T  *  L  E  K  S  Q  V  I  S  H  T  *  T  D  C  R  D  S  I  S  A  R  I  R  *  L  V  P  Y  Q  V  H  Y  Q  V  *  E  I  S  Q  T  *  I  C  G  G  I  N  *  V  V  E  F  R  L  T  L  V  T  *  M  C  C  *  N  S  N  L  E  G  T  N  S  V  G  L  F  L  I  C  H  *  V  Y  R  L  L  *  I  *  V  T  I  F  </first_frame>
            <second_frame>  G  P  Q  F  *  H  I  K  W  Y  N  S  S  G  P  L  I  P  N  E  L  A  V  C  *  S  H  F  Q  *  V  *  G  T  C  S  F  K  H  V  D  K  F  D  Q  V  E  I  G  A  K  C  F  E  W  V  I  S  I  C  F  F  *  K  P  S  K  F  D  L  L  G  T  G  Q  Q  P  V  N  R  T  N  S  F  R  I  E  K  V  P  K  V  G  P  F  E  L  S  S  E  *  A  E  W  C  Y  S  C  *  V  G  *  Y  V  *  S  S  G  T  E  S  S  I  Q  *  P  S  W  R  N  P  K  *  Y  L  T  L  E  Q  I  A  E  T  Q  F  Q  L  E  F  V  D  W  F  H  T  K  F  I  I  K  F  E  K  S  H  K  L  E  F  A  G  E  *  T  K  W  S  N  S  G  *  H  *  *  L  K  C  A  V  R  T  P  T  W  R  E  P  T  R  W  A  Y  S  *  Y  A  I  E  F  T  D  C  F  E  S  E  S  Q  S  F </second_frame>
            <third_frame>   D  L  S  F  N  T  L  N  G  T  I  P  Q  D  L  L  F  P  M  N  L  Q  F  V  D  L  T  S  N  K  F  E  G  P  V  P  S  N  M  S  I  N  L  I  R  L  R  L  G  Q  N  A  L  N  G  S  F  P  S  A  S  F  E  S  L  Q  S  L  T  Y  L  E  L  D  N  N  Q  L  T  G  P  I  P  S  E  L  R  K  C  Q  K  L  A  L  L  N  L  A  Q  N  K  L  S  G  V  I  P  V  E  L  V  D  M  S  N  L  Q  V  L  S  L  Q  S  N  N  L  V  G  E  I  P  S  N  I  S  H  L  N  R  L  Q  R  L  N  F  S  S  N  S  L  T  G  S  I  P  S  S  L  S  S  L  R  N  L  T  N  L  N  L  R  G  N  K  L  S  G  R  I  P  V  D  I  S  N  L  N  V  L  L  E  L  Q  L  G  G  N  Q  L  G  G  P  I  P  D  M  P  L  S  L  Q  I  A  L  N  L  S  H  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108164" stop="108820"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLSFNTLNGTIPQDLLFPMNLQFVDLTSNKFEGPVPSNMSINLIRLRLGQNALNGSFPSASFESLQSLTYLELDNNQLTGPIPSELRKCQKLALLNLAQNKLSGVIPVELVDMSNLQVLSLQSNNLVGEIPSNISHLNRLQRLNFSSNSLTGSIPSSLSSLRNLTNLNLRGNKLSGRIPVDISNLNVLLELQLGGNQLGGPIPDMPLSLQIALNLSHNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="122457" PGL_stop="116918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122457" e_stop="121933"/>
            <exon e_start="121217" e_stop="120936"/>
            <exon e_start="120823" e_stop="120676"/>
            <exon e_start="120554" e_stop="120472"/>
            <exon e_start="117700" e_stop="117623"/>
            <exon e_start="117528" e_stop="117065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.435" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122457" e_stop="121933" e_length="525"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.953">
            <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121217" e_stop="120936" e_length="282"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.914">
            <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120823" e_stop="120676" e_length="148"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.435">
            <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120554" e_stop="120472" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117700" e_stop="117623" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="117528" e_stop="117065" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122457" stop="121933"/>
              <exon start="121217" stop="120971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122456" stop="122023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122395" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122371" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122367" stop="121933"/>
              <exon start="121217" stop="121030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122367" stop="121933"/>
              <exon start="121217" stop="121082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122366" stop="121933"/>
              <exon start="121217" stop="121032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122365" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122365" stop="121933"/>
              <exon start="121217" stop="121126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122365" stop="121933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122365" stop="122085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122363" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122362" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121933"/>
              <exon start="121217" stop="121052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122358" stop="121933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122353" stop="121933"/>
              <exon start="121217" stop="121052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122352" stop="121933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122350" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122350" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122348" stop="121933"/>
              <exon start="121217" stop="121012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122346" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122346" stop="121933"/>
              <exon start="121217" stop="121052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122344" stop="121933"/>
              <exon start="121217" stop="121122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122333" stop="121933"/>
              <exon start="121217" stop="121126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122333" stop="121953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122234" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121987" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121983" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121043" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121006" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120981" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120976" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120975" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120975" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120975" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120974" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120966" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120963" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120807" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120551" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120506" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117394" stop="117065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215966" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATATTCTTAATTCTTTAAATTATTAATTTTGTGATTTTTCACTTGTATAAAATCAGAGAAGAGAGCTCTGCAATTGCTTCTTCCCCGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG : GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG : TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG : CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG : GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG : GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATCGACATTTTCTATTTTAGAAATTATTAATAGATTCAGTAACTTTACTATTTTGCACTTTGTTCATATTGATTGATCTCTTGAAAAAAGAA</gDNA_template>
            <first_frame> Y  I  L  N  S  L  N  Y  *  F  C  D  F  S  L  V  *  N  Q  R  R  E  L  C  N  C  F  F  P  E  V  Q  F  P  M  D  A  L  N  S  Y  A  S  S  A  A  M  A  Q  Q  T  W  E  L  E  N  N  I  V  T  T  D  A  P  S  G  S  A  P  E  N  S  A  S  D  A  I  F  H  Y  D  D  A  A  Q  T  K  F  Q  R  E  K  P  W  T  S  D  P  H  Y  F  K  R  V  K  I  S  A  L  A  L  L  K  M  V  V  H  A  R  S  G  G  T  I  E  V  M  G  L  M  Q  G  K  T  D  G  D  A  I  I  V  M  D  A  F  A  L  P  V  E  G  T  E  T  R  V  N  A  Q  A  D  A  Y  E  Y  M  V  E  Y  S  Q  T  N  K  Q  :  A  G  R  L  E  N  V  V  G  W  Y  H  S  H  P  G  Y  G  C  W  L  S  G  I  D  V  T  T  Q  M  L  N  Q  Q  Y  Q  E  P  F  L  A  V  V  I  D  P  T  R  T  V  S  A  G  K  V  E  I  G  A  F  R  T  Y  P  E  G  Y  K  P  P  D  D  P  I  S  E  Y  Q  T  I  P  L  N  K  I  E  D  F  G  V  H  C  K  Q  :  Y  Y  S  L  D  I  T  Y  F  K  S  S  L  D  C  H  L  L  D  L  L  W  N  K  Y  W  V  N  T  L  S  S  S  P  L  L  G  N  G  D  Y  V  A  G  Q  I  S  D  L   : A  E  K  L  E  Q  A  E  N  Q  L  S  H  S  R  F  G  H  L  V  A  A  P  Q  R  K  K  E  :  E  E  S  Q  L  A  K  I  T  R  D  S  A  K  I  T  V  E  Q  V  H  G  L  M  S  Q  :  V  I  K  D  I  L  F  N  S  V  C  K  S  G  K  S  Q  T  E  P  S  D  P  E  P  M  V  E  T  *  I  V  S  S  Y  *  S  R  F  R  F  V  S  R  F  L  F  A  V  N  *  T  Y  S  F  E  S  I  I  C  R  S  Q  G  V  K  V  *  D  G  H  P  *  Y  K  L  S  L  L  F  N  V  L  K  I  L  P  N  L  S  L  V  L  F  L  V  F  F  S  F  V  I  *  R  S  S  V  N  H  E  P  S  F  Y  M  N  G  T  T  S  I  L  Y  *  I  D  I  F  Y  F  R  N  Y  *  *  I  Q  *  L  Y  Y  F  A  L  C  S  Y  *  L  I  S  *  K  K   </first_frame>
            <second_frame>  I  F  L  I  L  *  I  I  N  F  V  I  F  H  L  Y  K  I  R  E  E  S  S  A  I  A  S  S  P  K  F  S  S  Q  W  T  L  *  I  L  T  H  R  R  R  R  W  R  N  K  H  G  S  *  K  T  T  S  *  R  R  T  R  H  R  G  R  H  R  K  T  L  R  R  M  Q  Y  S  T  M  T  M  R  H  R  L  S  S  S  G  R  S  R  G  R  V  T  L  T  T  S  S  A  *  R  S  L  L  L  L  F  *  R  W  L  F  T  R  V  L  E  V  Q  L  R  *  W  D  *  C  K  V  R  R  M  E  M  L  L  L  L  W  T  L  L  P  F  Q  L  K  E  L  K  L  G  L  M  L  K  L  M  R  M  N  T  W  L  N  I  H  R  P  T  S  R :   L  V  G  W  R  M  W  S  D  G  I  I  L  I  L  A  M  D  A  G  S  L  A  L  M  *  L  H  K  C  L  T  S  S  I  R  S  P  F  L  Q  L  L  L  I  Q  Q  E  L  F  L  L  E  K  L  R  L  V  P  F  E  H  I  L  K  D  I  S  L  Q  M  T  L  S  Q  S  T  R  P  F  L  *  T  K  L  K  T  S  E  Y  I  A  S  S :   I  I  H  W  I  L  P  I  S  S  P  L  S  I  A  I  S  W  T  Y  Y  G  T  S  I  G  *  T  H  F  L  L  L  L  C  L  E  M  E  T  M  L  L  D  R  Y  L  I  L  :  L  K  S  W  S  K  L  K  I  S  C  P  I  H  V  L  G  T  *  W  Q  P  L  K  G  R  R  R :   K  N  L  S  L  L  R  L  H  V  I  V  L  R  L  L  S  S  K  F  M  A  *  C  R  R :   L  L  K  T  F  F  S  I  A  F  V  S  Q  A  S  R  R  L  N  P  L  I  Q  S  R  W  S  K  P  E  *  F  H  P  I  S  P  D  L  D  L  S  L  G  F  F  L  Q  L  T  K  H  T  A  L  S  L  L  Y  V  G  P  K  G  *  K  F  K  M  A  T  P  D  I  N  Y  H  C  C  L  M  F  *  R  F  C  Q  I  F  H  *  F  F  S  L  S  S  F  L  L  L  F  R  E  V  L  *  I  M  N  H  P  F  I  *  M  V  Q  P  L  S  C  I  R  S  T  F  S  I  L  E  I  I  N  R  F  S  N  F  T  I  L  H  F  V  H  I  D  *  S  L  E  K  R  </second_frame>
            <third_frame>   Y  S  *  F  F  K  L  L  I  L  *  F  F  T  C  I  K  S  E  K  R  A  L  Q  L  L  L  P  R  S  S  V  P  N  G  R  S  E  F  L  R  I  V  G  G  D  G  A  T  N  M  G  V  R  K  Q  H  R  D  D  G  R  A  I  G  V  G  T  G  K  L  C  V  G  C  N  I  P  L  *  R  C  G  T  D  *  V  P  A  G  E  A  V  D  E  *  P  S  L  L  Q  A  R  E  D  L  C  S  C  S  S  K  D  G  C  S  R  A  F  W  R  Y  N  *  G  N  G  T  N  A  R  *  D  G  W  R  C  Y  Y  C  Y  G  R  F  C  P  S  S  *  R  N  *  N  *  G  *  C  S  S  *  C  V  *  I  H  G  *  I  F  T  D  Q  Q  A   : G  W  S  A  G  E  C  G  R  M  V  S  F  S  S  W  L  W  M  L  A  L  W  H  *  C  N  Y  T  N  A  *  P  A  V  S  G  A  L  S  C  S  C  Y  *  S  N  K  N  C  F  C  W  K  S  *  D  W  C  L  S  N  I  S  *  R  I  *  A  S  R  *  P  Y  L  R  V  P  D  H  S  F  E  Q  N  *  R  L  R  S  T  L  Q  A   : V  L  F  I  G  Y  Y  L  F  Q  V  L  S  R  L  P  S  L  G  P  T  M  E  Q  V  L  G  E  H  T  F  F  F  S  F  A  W  K  W  R  L  C  C  W  T  D  I  *  S  C :   *  K  V  G  A  S  *  K  S  A  V  P  F  T  F  W  A  L  S  G  S  P  S  K  E  E  G   : G  R  I  S  A  C  *  D  Y  T  *  *  C  *  D  Y  C  R  A  S  S  W  L  N  V  A   : G  Y  *  R  H  S  F  Q  *  R  L  *  V  R  Q  V  A  D  *  T  L  *  S  R  A  D  G  R  N  L  N  S  F  I  L  L  V  Q  I  *  I  C  L  *  V  S  F  C  S  *  L  N  I  Q  L  *  V  Y  Y  M  *  V  P  R  G  E  S  L  R  W  P  P  L  I  *  I  I  I  A  V  *  C  F  E  D  F  A  K  S  F  T  S  S  F  P  C  L  L  F  F  C  Y  L  E  K  F  C  K  S  *  T  I  L  L  Y  E  W  Y  N  L  Y  L  V  L  D  R  H  F  L  F  *  K  L  L  I  D  S  V  T  L  L  F  C  T  L  F  I  L  I  D  L  L  K  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122406" stop="121933"/>
                    <exon start="121217" stop="120936"/>
                    <exon start="120823" stop="120676"/>
                    <exon start="120554" stop="120472"/>
                    <exon start="117700" stop="117623"/>
                    <exon start="117528" stop="117439"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQRRELCNCFFPEVQFPMDALNSYASSAAMAQQTWELENNIVTTDAPSGSAPENSASDAIFHYDDAAQTKFQREKPWTSDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVEYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVTTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRFGHLVAAPQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVCKSGKSQTEPSDPEPMVET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="122457" e_stop="121933"/>
            <exon e_start="121217" e_stop="120936"/>
            <exon e_start="120823" e_stop="120676"/>
            <exon e_start="120554" e_stop="120472"/>
            <exon e_start="117700" e_stop="117623"/>
            <exon e_start="117528" e_stop="117103"/>
            <exon e_start="116935" e_stop="116918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.435" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.785" e_score="1.000"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122457" e_stop="121933" e_length="525"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.953">
            <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121217" e_stop="120936" e_length="282"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.914">
            <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120823" e_stop="120676" e_length="148"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.435">
            <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120554" e_stop="120472" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117700" e_stop="117623" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="117528" e_stop="117103" e_length="426"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.785">
            <gDNA_intron_boundary i_start="117102" i_stop="116936" i_length="167"/>
          </intron>
          <exon e_serial="7" e_score="0.500">
            <gDNA_exon_boundary e_start="116935" e_stop="116918" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122457" stop="121933"/>
              <exon start="121217" stop="120971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122456" stop="122023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122395" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122371" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122367" stop="121933"/>
              <exon start="121217" stop="121030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122367" stop="121933"/>
              <exon start="121217" stop="121082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122366" stop="121933"/>
              <exon start="121217" stop="121032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122365" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122365" stop="121933"/>
              <exon start="121217" stop="121126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122365" stop="121933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122365" stop="122085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122363" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122362" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117103"/>
              <exon start="116935" stop="116918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122362" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121933"/>
              <exon start="121217" stop="121052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122358" stop="121933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122353" stop="121933"/>
              <exon start="121217" stop="121052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122352" stop="121933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122350" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122350" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122348" stop="121933"/>
              <exon start="121217" stop="121012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122346" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122346" stop="121933"/>
              <exon start="121217" stop="121052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122344" stop="121933"/>
              <exon start="121217" stop="121122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122333" stop="121933"/>
              <exon start="121217" stop="121126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122333" stop="121953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122234" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121987" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121983" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121043" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121006" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120981" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120976" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120975" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120975" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120975" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120974" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120966" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120963" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120551" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120506" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATATTCTTAATTCTTTAAATTATTAATTTTGTGATTTTTCACTTGTATAAAATCAGAGAAGAGAGCTCTGCAATTGCTTCTTCCCCGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG : GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG : TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG : CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG : GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG : GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATCGACATTTTCTATTTTAGAAATTATTAATAGATTCAGTAACTTTACTATTTT : TAAGATGCAGGAACAGAA</gDNA_template>
            <first_frame> Y  I  L  N  S  L  N  Y  *  F  C  D  F  S  L  V  *  N  Q  R  R  E  L  C  N  C  F  F  P  E  V  Q  F  P  M  D  A  L  N  S  Y  A  S  S  A  A  M  A  Q  Q  T  W  E  L  E  N  N  I  V  T  T  D  A  P  S  G  S  A  P  E  N  S  A  S  D  A  I  F  H  Y  D  D  A  A  Q  T  K  F  Q  R  E  K  P  W  T  S  D  P  H  Y  F  K  R  V  K  I  S  A  L  A  L  L  K  M  V  V  H  A  R  S  G  G  T  I  E  V  M  G  L  M  Q  G  K  T  D  G  D  A  I  I  V  M  D  A  F  A  L  P  V  E  G  T  E  T  R  V  N  A  Q  A  D  A  Y  E  Y  M  V  E  Y  S  Q  T  N  K  Q  :  A  G  R  L  E  N  V  V  G  W  Y  H  S  H  P  G  Y  G  C  W  L  S  G  I  D  V  T  T  Q  M  L  N  Q  Q  Y  Q  E  P  F  L  A  V  V  I  D  P  T  R  T  V  S  A  G  K  V  E  I  G  A  F  R  T  Y  P  E  G  Y  K  P  P  D  D  P  I  S  E  Y  Q  T  I  P  L  N  K  I  E  D  F  G  V  H  C  K  Q  :  Y  Y  S  L  D  I  T  Y  F  K  S  S  L  D  C  H  L  L  D  L  L  W  N  K  Y  W  V  N  T  L  S  S  S  P  L  L  G  N  G  D  Y  V  A  G  Q  I  S  D  L   : A  E  K  L  E  Q  A  E  N  Q  L  S  H  S  R  F  G  H  L  V  A  A  P  Q  R  K  K  E  :  E  E  S  Q  L  A  K  I  T  R  D  S  A  K  I  T  V  E  Q  V  H  G  L  M  S  Q  :  V  I  K  D  I  L  F  N  S  V  C  K  S  G  K  S  Q  T  E  P  S  D  P  E  P  M  V  E  T  *  I  V  S  S  Y  *  S  R  F  R  F  V  S  R  F  L  F  A  V  N  *  T  Y  S  F  E  S  I  I  C  R  S  Q  G  V  K  V  *  D  G  H  P  *  Y  K  L  S  L  L  F  N  V  L  K  I  L  P  N  L  S  L  V  L  F  L  V  F  F  S  F  V  I  *  R  S  S  V  N  H  E  P  S  F  Y  M  N  G  T  T  S  I  L  Y  *  I  D  I  F  Y  F  R  N  Y  *  *  I  Q  *  L  Y  Y  F  :  *  D  A  G  T  E </first_frame>
            <second_frame>  I  F  L  I  L  *  I  I  N  F  V  I  F  H  L  Y  K  I  R  E  E  S  S  A  I  A  S  S  P  K  F  S  S  Q  W  T  L  *  I  L  T  H  R  R  R  R  W  R  N  K  H  G  S  *  K  T  T  S  *  R  R  T  R  H  R  G  R  H  R  K  T  L  R  R  M  Q  Y  S  T  M  T  M  R  H  R  L  S  S  S  G  R  S  R  G  R  V  T  L  T  T  S  S  A  *  R  S  L  L  L  L  F  *  R  W  L  F  T  R  V  L  E  V  Q  L  R  *  W  D  *  C  K  V  R  R  M  E  M  L  L  L  L  W  T  L  L  P  F  Q  L  K  E  L  K  L  G  L  M  L  K  L  M  R  M  N  T  W  L  N  I  H  R  P  T  S  R :   L  V  G  W  R  M  W  S  D  G  I  I  L  I  L  A  M  D  A  G  S  L  A  L  M  *  L  H  K  C  L  T  S  S  I  R  S  P  F  L  Q  L  L  L  I  Q  Q  E  L  F  L  L  E  K  L  R  L  V  P  F  E  H  I  L  K  D  I  S  L  Q  M  T  L  S  Q  S  T  R  P  F  L  *  T  K  L  K  T  S  E  Y  I  A  S  S :   I  I  H  W  I  L  P  I  S  S  P  L  S  I  A  I  S  W  T  Y  Y  G  T  S  I  G  *  T  H  F  L  L  L  L  C  L  E  M  E  T  M  L  L  D  R  Y  L  I  L  :  L  K  S  W  S  K  L  K  I  S  C  P  I  H  V  L  G  T  *  W  Q  P  L  K  G  R  R  R :   K  N  L  S  L  L  R  L  H  V  I  V  L  R  L  L  S  S  K  F  M  A  *  C  R  R :   L  L  K  T  F  F  S  I  A  F  V  S  Q  A  S  R  R  L  N  P  L  I  Q  S  R  W  S  K  P  E  *  F  H  P  I  S  P  D  L  D  L  S  L  G  F  F  L  Q  L  T  K  H  T  A  L  S  L  L  Y  V  G  P  K  G  *  K  F  K  M  A  T  P  D  I  N  Y  H  C  C  L  M  F  *  R  F  C  Q  I  F  H  *  F  F  S  L  S  S  F  L  L  L  F  R  E  V  L  *  I  M  N  H  P  F  I  *  M  V  Q  P  L  S  C  I  R  S  T  F  S  I  L  E  I  I  N  R  F  S  N  F  T  I  F :   K  M  Q  E  Q   </second_frame>
            <third_frame>   Y  S  *  F  F  K  L  L  I  L  *  F  F  T  C  I  K  S  E  K  R  A  L  Q  L  L  L  P  R  S  S  V  P  N  G  R  S  E  F  L  R  I  V  G  G  D  G  A  T  N  M  G  V  R  K  Q  H  R  D  D  G  R  A  I  G  V  G  T  G  K  L  C  V  G  C  N  I  P  L  *  R  C  G  T  D  *  V  P  A  G  E  A  V  D  E  *  P  S  L  L  Q  A  R  E  D  L  C  S  C  S  S  K  D  G  C  S  R  A  F  W  R  Y  N  *  G  N  G  T  N  A  R  *  D  G  W  R  C  Y  Y  C  Y  G  R  F  C  P  S  S  *  R  N  *  N  *  G  *  C  S  S  *  C  V  *  I  H  G  *  I  F  T  D  Q  Q  A   : G  W  S  A  G  E  C  G  R  M  V  S  F  S  S  W  L  W  M  L  A  L  W  H  *  C  N  Y  T  N  A  *  P  A  V  S  G  A  L  S  C  S  C  Y  *  S  N  K  N  C  F  C  W  K  S  *  D  W  C  L  S  N  I  S  *  R  I  *  A  S  R  *  P  Y  L  R  V  P  D  H  S  F  E  Q  N  *  R  L  R  S  T  L  Q  A   : V  L  F  I  G  Y  Y  L  F  Q  V  L  S  R  L  P  S  L  G  P  T  M  E  Q  V  L  G  E  H  T  F  F  F  S  F  A  W  K  W  R  L  C  C  W  T  D  I  *  S  C :   *  K  V  G  A  S  *  K  S  A  V  P  F  T  F  W  A  L  S  G  S  P  S  K  E  E  G   : G  R  I  S  A  C  *  D  Y  T  *  *  C  *  D  Y  C  R  A  S  S  W  L  N  V  A   : G  Y  *  R  H  S  F  Q  *  R  L  *  V  R  Q  V  A  D  *  T  L  *  S  R  A  D  G  R  N  L  N  S  F  I  L  L  V  Q  I  *  I  C  L  *  V  S  F  C  S  *  L  N  I  Q  L  *  V  Y  Y  M  *  V  P  R  G  E  S  L  R  W  P  P  L  I  *  I  I  I  A  V  *  C  F  E  D  F  A  K  S  F  T  S  S  F  P  C  L  L  F  F  C  Y  L  E  K  F  C  K  S  *  T  I  L  L  Y  E  W  Y  N  L  Y  L  V  L  D  R  H  F  L  F  *  K  L  L  I  D  S  V  T  L  L  F   : L  R  C  R  N  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122406" stop="121933"/>
                    <exon start="121217" stop="120936"/>
                    <exon start="120823" stop="120676"/>
                    <exon start="120554" stop="120472"/>
                    <exon start="117700" stop="117623"/>
                    <exon start="117528" stop="117439"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQRRELCNCFFPEVQFPMDALNSYASSAAMAQQTWELENNIVTTDAPSGSAPENSASDAIFHYDDAAQTKFQREKPWTSDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVEYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVTTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRFGHLVAAPQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVCKSGKSQTEPSDPEPMVET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="122457" e_stop="121933"/>
            <exon e_start="121217" e_stop="120936"/>
            <exon e_start="120823" e_stop="120676"/>
            <exon e_start="120554" e_stop="120472"/>
            <exon e_start="117700" e_stop="117623"/>
            <exon e_start="117528" e_stop="117256"/>
            <exon e_start="116935" e_stop="116920"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.435" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.355" acc_prob="0.785" e_score="0.993"/>
          <exon-only e_score="0.438"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122457" e_stop="121933" e_length="525"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.953">
            <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121217" e_stop="120936" e_length="282"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.914">
            <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120823" e_stop="120676" e_length="148"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.435">
            <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120554" e_stop="120472" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117700" e_stop="117623" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="117528" e_stop="117256" e_length="273"/>
          </exon>
          <intron i_serial="6" don_prob="0.355" acc_prob="0.785">
            <gDNA_intron_boundary i_start="117255" i_stop="116936" i_length="320"/>
          </intron>
          <exon e_serial="7" e_score="0.438">
            <gDNA_exon_boundary e_start="116935" e_stop="116920" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122457" stop="121933"/>
              <exon start="121217" stop="120971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122456" stop="122023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122395" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122371" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117256"/>
              <exon start="116935" stop="116920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122371" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122367" stop="121933"/>
              <exon start="121217" stop="121030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122367" stop="121933"/>
              <exon start="121217" stop="121082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122366" stop="121933"/>
              <exon start="121217" stop="121032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122365" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122365" stop="121933"/>
              <exon start="121217" stop="121126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122365" stop="121933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122365" stop="122085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122363" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122362" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121933"/>
              <exon start="121217" stop="121052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122358" stop="121933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122353" stop="121933"/>
              <exon start="121217" stop="121052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122352" stop="121933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122350" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122350" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122348" stop="121933"/>
              <exon start="121217" stop="121012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122346" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122346" stop="121933"/>
              <exon start="121217" stop="121052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122344" stop="121933"/>
              <exon start="121217" stop="121122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122333" stop="121933"/>
              <exon start="121217" stop="121126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122333" stop="121953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122234" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121987" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121983" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121043" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121006" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120976" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120975" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120975" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120966" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120963" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254682" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATATTCTTAATTCTTTAAATTATTAATTTTGTGATTTTTCACTTGTATAAAATCAGAGAAGAGAGCTCTGCAATTGCTTCTTCCCCGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG : GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG : TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG : CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG : GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG : GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTA : TAAGATGCAGGAACAG</gDNA_template>
            <first_frame> Y  I  L  N  S  L  N  Y  *  F  C  D  F  S  L  V  *  N  Q  R  R  E  L  C  N  C  F  F  P  E  V  Q  F  P  M  D  A  L  N  S  Y  A  S  S  A  A  M  A  Q  Q  T  W  E  L  E  N  N  I  V  T  T  D  A  P  S  G  S  A  P  E  N  S  A  S  D  A  I  F  H  Y  D  D  A  A  Q  T  K  F  Q  R  E  K  P  W  T  S  D  P  H  Y  F  K  R  V  K  I  S  A  L  A  L  L  K  M  V  V  H  A  R  S  G  G  T  I  E  V  M  G  L  M  Q  G  K  T  D  G  D  A  I  I  V  M  D  A  F  A  L  P  V  E  G  T  E  T  R  V  N  A  Q  A  D  A  Y  E  Y  M  V  E  Y  S  Q  T  N  K  Q  :  A  G  R  L  E  N  V  V  G  W  Y  H  S  H  P  G  Y  G  C  W  L  S  G  I  D  V  T  T  Q  M  L  N  Q  Q  Y  Q  E  P  F  L  A  V  V  I  D  P  T  R  T  V  S  A  G  K  V  E  I  G  A  F  R  T  Y  P  E  G  Y  K  P  P  D  D  P  I  S  E  Y  Q  T  I  P  L  N  K  I  E  D  F  G  V  H  C  K  Q  :  Y  Y  S  L  D  I  T  Y  F  K  S  S  L  D  C  H  L  L  D  L  L  W  N  K  Y  W  V  N  T  L  S  S  S  P  L  L  G  N  G  D  Y  V  A  G  Q  I  S  D  L   : A  E  K  L  E  Q  A  E  N  Q  L  S  H  S  R  F  G  H  L  V  A  A  P  Q  R  K  K  E  :  E  E  S  Q  L  A  K  I  T  R  D  S  A  K  I  T  V  E  Q  V  H  G  L  M  S  Q  :  V  I  K  D  I  L  F  N  S  V  C  K  S  G  K  S  Q  T  E  P  S  D  P  E  P  M  V  E  T  *  I  V  S  S  Y  *  S  R  F  R  F  V  S  R  F  L  F  A  V  N  *  T  Y  S  F  E  S  I  I  C  R  S  Q  G  V  K  V  *  D  G  H  P  *  Y  K  L  S  L  L  F  N  V  L  K  I  L  P  N  L  S  L  :  *  D  A  G  T  </first_frame>
            <second_frame>  I  F  L  I  L  *  I  I  N  F  V  I  F  H  L  Y  K  I  R  E  E  S  S  A  I  A  S  S  P  K  F  S  S  Q  W  T  L  *  I  L  T  H  R  R  R  R  W  R  N  K  H  G  S  *  K  T  T  S  *  R  R  T  R  H  R  G  R  H  R  K  T  L  R  R  M  Q  Y  S  T  M  T  M  R  H  R  L  S  S  S  G  R  S  R  G  R  V  T  L  T  T  S  S  A  *  R  S  L  L  L  L  F  *  R  W  L  F  T  R  V  L  E  V  Q  L  R  *  W  D  *  C  K  V  R  R  M  E  M  L  L  L  L  W  T  L  L  P  F  Q  L  K  E  L  K  L  G  L  M  L  K  L  M  R  M  N  T  W  L  N  I  H  R  P  T  S  R :   L  V  G  W  R  M  W  S  D  G  I  I  L  I  L  A  M  D  A  G  S  L  A  L  M  *  L  H  K  C  L  T  S  S  I  R  S  P  F  L  Q  L  L  L  I  Q  Q  E  L  F  L  L  E  K  L  R  L  V  P  F  E  H  I  L  K  D  I  S  L  Q  M  T  L  S  Q  S  T  R  P  F  L  *  T  K  L  K  T  S  E  Y  I  A  S  S :   I  I  H  W  I  L  P  I  S  S  P  L  S  I  A  I  S  W  T  Y  Y  G  T  S  I  G  *  T  H  F  L  L  L  L  C  L  E  M  E  T  M  L  L  D  R  Y  L  I  L  :  L  K  S  W  S  K  L  K  I  S  C  P  I  H  V  L  G  T  *  W  Q  P  L  K  G  R  R  R :   K  N  L  S  L  L  R  L  H  V  I  V  L  R  L  L  S  S  K  F  M  A  *  C  R  R :   L  L  K  T  F  F  S  I  A  F  V  S  Q  A  S  R  R  L  N  P  L  I  Q  S  R  W  S  K  P  E  *  F  H  P  I  S  P  D  L  D  L  S  L  G  F  F  L  Q  L  T  K  H  T  A  L  S  L  L  Y  V  G  P  K  G  *  K  F  K  M  A  T  P  D  I  N  Y  H  C  C  L  M  F  *  R  F  C  Q  I  F  H  Y :   K  M  Q  E  Q </second_frame>
            <third_frame>   Y  S  *  F  F  K  L  L  I  L  *  F  F  T  C  I  K  S  E  K  R  A  L  Q  L  L  L  P  R  S  S  V  P  N  G  R  S  E  F  L  R  I  V  G  G  D  G  A  T  N  M  G  V  R  K  Q  H  R  D  D  G  R  A  I  G  V  G  T  G  K  L  C  V  G  C  N  I  P  L  *  R  C  G  T  D  *  V  P  A  G  E  A  V  D  E  *  P  S  L  L  Q  A  R  E  D  L  C  S  C  S  S  K  D  G  C  S  R  A  F  W  R  Y  N  *  G  N  G  T  N  A  R  *  D  G  W  R  C  Y  Y  C  Y  G  R  F  C  P  S  S  *  R  N  *  N  *  G  *  C  S  S  *  C  V  *  I  H  G  *  I  F  T  D  Q  Q  A   : G  W  S  A  G  E  C  G  R  M  V  S  F  S  S  W  L  W  M  L  A  L  W  H  *  C  N  Y  T  N  A  *  P  A  V  S  G  A  L  S  C  S  C  Y  *  S  N  K  N  C  F  C  W  K  S  *  D  W  C  L  S  N  I  S  *  R  I  *  A  S  R  *  P  Y  L  R  V  P  D  H  S  F  E  Q  N  *  R  L  R  S  T  L  Q  A   : V  L  F  I  G  Y  Y  L  F  Q  V  L  S  R  L  P  S  L  G  P  T  M  E  Q  V  L  G  E  H  T  F  F  F  S  F  A  W  K  W  R  L  C  C  W  T  D  I  *  S  C :   *  K  V  G  A  S  *  K  S  A  V  P  F  T  F  W  A  L  S  G  S  P  S  K  E  E  G   : G  R  I  S  A  C  *  D  Y  T  *  *  C  *  D  Y  C  R  A  S  S  W  L  N  V  A   : G  Y  *  R  H  S  F  Q  *  R  L  *  V  R  Q  V  A  D  *  T  L  *  S  R  A  D  G  R  N  L  N  S  F  I  L  L  V  Q  I  *  I  C  L  *  V  S  F  C  S  *  L  N  I  Q  L  *  V  Y  Y  M  *  V  P  R  G  E  S  L  R  W  P  P  L  I  *  I  I  I  A  V  *  C  F  E  D  F  A  K  S  F  T   : I  R  C  R  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122406" stop="121933"/>
                    <exon start="121217" stop="120936"/>
                    <exon start="120823" stop="120676"/>
                    <exon start="120554" stop="120472"/>
                    <exon start="117700" stop="117623"/>
                    <exon start="117528" stop="117439"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQRRELCNCFFPEVQFPMDALNSYASSAAMAQQTWELENNIVTTDAPSGSAPENSASDAIFHYDDAAQTKFQREKPWTSDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVEYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVTTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRFGHLVAAPQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVCKSGKSQTEPSDPEPMVET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="122456" e_stop="121704"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="122456" e_stop="121704" e_length="753"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122456" stop="122023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122365" stop="121933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122365" stop="122085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122359" stop="121995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122358" stop="121933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122352" stop="121704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122352" stop="121933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122333" stop="121953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485531" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATTCTTAATTCTTTAAATTATTAATTTTGTGATTTTTCACTTGTATAAAATCAGAGAAGAGAGCTCTGCAATTGCTTCTTCCCCGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCT</gDNA_template>
            <first_frame> I  F  L  I  L  *  I  I  N  F  V  I  F  H  L  Y  K  I  R  E  E  S  S  A  I  A  S  S  P  K  F  S  S  Q  W  T  L  *  I  L  T  H  R  R  R  R  W  R  N  K  H  G  S  *  K  T  T  S  *  R  R  T  R  H  R  G  R  H  R  K  T  L  R  R  M  Q  Y  S  T  M  T  M  R  H  R  L  S  S  S  G  R  S  R  G  R  V  T  L  T  T  S  S  A  *  R  S  L  L  L  L  F  *  R  W  L  F  T  R  V  L  E  V  Q  L  R  *  W  D  *  C  K  V  R  R  M  E  M  L  L  L  L  W  T  L  L  P  F  Q  L  K  E  L  K  L  G  L  M  L  K  L  M  R  M  N  T  W  L  N  I  H  R  P  T  S  R  L  I  M  P  F  Y  H  F  F  F  L  L  F  D  V  V  V  L  I  M  E  K  G  I  L  V  L  N  *  S  V  Y  R  N  F  S  D  I  I  S  I  V  N  G  F  K  K  G  Q  G  G  E  L  I  E  L  I  E  I  E  A  L  F  L  L  A  S  R  P  V  C  I  D  *  L  P </first_frame>
            <second_frame>  Y  S  *  F  F  K  L  L  I  L  *  F  F  T  C  I  K  S  E  K  R  A  L  Q  L  L  L  P  R  S  S  V  P  N  G  R  S  E  F  L  R  I  V  G  G  D  G  A  T  N  M  G  V  R  K  Q  H  R  D  D  G  R  A  I  G  V  G  T  G  K  L  C  V  G  C  N  I  P  L  *  R  C  G  T  D  *  V  P  A  G  E  A  V  D  E  *  P  S  L  L  Q  A  R  E  D  L  C  S  C  S  S  K  D  G  C  S  R  A  F  W  R  Y  N  *  G  N  G  T  N  A  R  *  D  G  W  R  C  Y  Y  C  Y  G  R  F  C  P  S  S  *  R  N  *  N  *  G  *  C  S  S  *  C  V  *  I  H  G  *  I  F  T  D  Q  Q  A  G  *  *  C  L  F  I  T  F  F  F  F  F  L  M  L  W  C  *  *  W  R  R  V  Y  *  C  *  T  S  Q  F  T  E  T  F  R  I  *  *  V  L  *  M  G  S  K  R  G  R  A  V  S  *  *  N  *  L  R  L  K  L  C  S  C  W  R  P  G  Q  F  A  L  T  S  Y   </second_frame>
            <third_frame>   I  L  N  S  L  N  Y  *  F  C  D  F  S  L  V  *  N  Q  R  R  E  L  C  N  C  F  F  P  E  V  Q  F  P  M  D  A  L  N  S  Y  A  S  S  A  A  M  A  Q  Q  T  W  E  L  E  N  N  I  V  T  T  D  A  P  S  G  S  A  P  E  N  S  A  S  D  A  I  F  H  Y  D  D  A  A  Q  T  K  F  Q  R  E  K  P  W  T  S  D  P  H  Y  F  K  R  V  K  I  S  A  L  A  L  L  K  M  V  V  H  A  R  S  G  G  T  I  E  V  M  G  L  M  Q  G  K  T  D  G  D  A  I  I  V  M  D  A  F  A  L  P  V  E  G  T  E  T  R  V  N  A  Q  A  D  A  Y  E  Y  M  V  E  Y  S  Q  T  N  K  Q  V  N  N  A  F  L  S  L  F  F  S  S  F  *  C  C  G  V  D  N  G  E  G  Y  T  S  A  K  L  V  S  L  Q  K  L  F  G  Y  N  K  Y  C  K  W  V  Q  K  G  A  G  R  *  V  D  R  I  D  *  D  *  S  F  V  L  V  G  V  Q  A  S  L  H  *  L  V  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122406" stop="121891"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQRRELCNCFFPEVQFPMDALNSYASSAAMAQQTWELENNIVTTDAPSGSAPENSASDAIFHYDDAAQTKFQREKPWTSDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVEYSQTNKQVNNAFLSLFFSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="141535" PGL_stop="140822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="141535" e_stop="140822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="141535" e_stop="140822" e_length="714"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141535" stop="140822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAGCTTAACCCATCTCCCAAATTACTCTTCTCTACTCCTCACCGACCAAGAGTGCACTCTTACAGACTCAAAACCCAGAACAATTCGCTTTTGTTTAAGCGAATCGTGCAGACAAGGCCAACCCCATCTCGCCTGCCAACTGTTCAATACAATTCCTCAACCATCAACTGTCCTTTGGAACACAATAATAATTGGGTTTATCTGTAATAACATGCCCCATGAATCCATTTTATTCTATTCTAGATTGAAACATGTGGATTCATCCGTATGTGATCAGTATACTTATTCCTCTGTTCTTAAGGCTTGCGCAGAGACCAAAGGGATTCTTGTAGGTAAAGCCGTGCATCGCCACATTCTGTTTTCTGGGATTCATACTTGTAGGATTGTTAGTAATTCTTTGTTGAATATGTACTCTGCTACTTGTCTTACATTGGATAATGGTTCTGATTGTGGTTTAGTTTAAAGGGTGTTTAGAACTATGCATCAAAGAAATGTTGTTGCGCGGATTACTATTTTTTCATGGTATGTGAAAAGGAAGAGGTTTTCGGAAGCAGTGAGGTGTTTTGTTATGATGATGAGATAAGGCATTAAGCCAACTGTTGTTAGTTTTATTAATGTTTTTCCTACTGTATCAGAAATAAGGGATGTTAGAGTTGCTGATGTTCTTTATGGGTTGCTTGCGAAATTGGGTAATGCATATGTAAATGACTT</gDNA_template>
            <first_frame> F  E  L  N  P  S  P  K  L  L  F  S  T  P  H  R  P  R  V  H  S  Y  R  L  K  T  Q  N  N  S  L  L  F  K  R  I  V  Q  T  R  P  T  P  S  R  L  P  T  V  Q  Y  N  S  S  T  I  N  C  P  L  E  H  N  N  N  W  V  Y  L  *  *  H  A  P  *  I  H  F  I  L  F  *  I  E  T  C  G  F  I  R  M  *  S  V  Y  L  F  L  C  S  *  G  L  R  R  D  Q  R  D  S  C  R  *  S  R  A  S  P  H  S  V  F  W  D  S  Y  L  *  D  C  *  *  F  F  V  E  Y  V  L  C  Y  L  S  Y  I  G  *  W  F  *  L  W  F  S  L  K  G  V  *  N  Y  A  S  K  K  C  C  C  A  D  Y  Y  F  F  M  V  C  E  K  E  E  V  F  G  S  S  E  V  F  C  Y  D  D  E  I  R  H  *  A  N  C  C  *  F  Y  *  C  F  S  Y  C  I  R  N  K  G  C  *  S  C  *  C  S  L  W  V  A  C  E  I  G  *  C  I  C  K  *  L </first_frame>
            <second_frame>  L  S  L  T  H  L  P  N  Y  S  S  L  L  L  T  D  Q  E  C  T  L  T  D  S  K  P  R  T  I  R  F  C  L  S  E  S  C  R  Q  G  Q  P  H  L  A  C  Q  L  F  N  T  I  P  Q  P  S  T  V  L  W  N  T  I  I  I  G  F  I  C  N  N  M  P  H  E  S  I  L  F  Y  S  R  L  K  H  V  D  S  S  V  C  D  Q  Y  T  Y  S  S  V  L  K  A  C  A  E  T  K  G  I  L  V  G  K  A  V  H  R  H  I  L  F  S  G  I  H  T  C  R  I  V  S  N  S  L  L  N  M  Y  S  A  T  C  L  T  L  D  N  G  S  D  C  G  L  V  *  R  V  F  R  T  M  H  Q  R  N  V  V  A  R  I  T  I  F  S  W  Y  V  K  R  K  R  F  S  E  A  V  R  C  F  V  M  M  M  R  *  G  I  K  P  T  V  V  S  F  I  N  V  F  P  T  V  S  E  I  R  D  V  R  V  A  D  V  L  Y  G  L  L  A  K  L  G  N  A  Y  V  N  D   </second_frame>
            <third_frame>   *  A  *  P  I  S  Q  I  T  L  L  Y  S  S  P  T  K  S  A  L  L  Q  T  Q  N  P  E  Q  F  A  F  V  *  A  N  R  A  D  K  A  N  P  I  S  P  A  N  C  S  I  Q  F  L  N  H  Q  L  S  F  G  T  Q  *  *  L  G  L  S  V  I  T  C  P  M  N  P  F  Y  S  I  L  D  *  N  M  W  I  H  P  Y  V  I  S  I  L  I  P  L  F  L  R  L  A  Q  R  P  K  G  F  L  *  V  K  P  C  I  A  T  F  C  F  L  G  F  I  L  V  G  L  L  V  I  L  C  *  I  C  T  L  L  L  V  L  H  W  I  M  V  L  I  V  V  *  F  K  G  C  L  E  L  C  I  K  E  M  L  L  R  G  L  L  F  F  H  G  M  *  K  G  R  G  F  R  K  Q  *  G  V  L  L  *  *  *  D  K  A  L  S  Q  L  L  L  V  L  L  M  F  F  L  L  Y  Q  K  *  G  M  L  E  L  L  M  F  F  M  G  C  L  R  N  W  V  M  H  M  *  M  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0291F09.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141534" stop="141070"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLTHLPNYSSLLLTDQECTLTDSKPRTIRFCLSESCRQGQPHLACQLFNTIPQPSTVLWNTIIIGFICNNMPHESILFYSRLKHVDSSVCDQYTYSSVLKACAETKGILVGKAVHRHILFSGIHTCRIVSNSLLNMYSATCLTLDNGSDCGLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 283 chains have been computed
$ 
$ memory statistics:
$ 1132904 bytes spliced alignments in total
$ 121 spliced alignments have been stored
$ 9362 bytes was the average size of a spliced alignment
$ 27032 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1689 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 354 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:20:04
-->
