<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:26:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311531" ref_strand="+" ref_description="SGN-E311531 [cTOA-6-I9]">
      <seq>tgttaatagcagccgacaaaattaagaatgaggcacattctatttcgtgttcctcctccaaccaacacctcccacttccctctgccccccttacccccaaactacaatcctctacatatacatatctgtatctaactcttagtattgcttcaagaaagtttgattcaacttgtaaattttcaattttgaaagttgggtacttgtttttttttgaattggggttagctccatgtgggattcttgaattttgatttgatgaatttccttccaagatgtttgagttacagtgaatgtagtggtggagctggaagaagtgaaattaggggtggtgaaagttccaatggtggatttgggaaagatgggttgttgtggtttcatgatattgggaattgtgggagtggggaatattccatggctattgtgcaagctaatcaggtcttagaggatcagagccagattgagtctggtccatttggaacttttgttggagtctatgatggtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="2665" stop="3769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2965" g_stop="3469" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E311531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2965" e_stop="3469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAATAGCAGCCGACAAAATTAAGAATGAGGCACATTCTATTTCGTGTTCCTCCTCCAACCAACACCTCCCACTTCCCTCTGCCCCCCTTACCCCCAAACTACAATCCTCTACATATACATATCTGTATCTAACTCTTAGTATTGCTTCAAGAAAGTTTGATTCAACTTGTAAATTTTCAATTTTGAAAGTTGGGTACTTGTTTTTTTTTGAATTGGGGTTAGCTCCATGTGGGATTCTTGAATTTTGATTTGATGAATTTCCTTCCAAGATGTTTGAGTTACAGTGAATGTAGTGGTGGAGCTGGAAGAAGTGAAATTAGGGGTGGTGAAAGTTCCAATGGTGGATTTGGGAAAGATGGGTTGTTGTGGTTTCATGATATTGGGAATTGTGGGAGTGGGGAATATTCCATGGCTATTGTGCAAGCTAATCAGGTCTTAGAGGATCAGAGCCAGATTGAGTCTGGTCCATTTGGAACTTTTGTTGGAGTCTATGATGGTCATG</genome_strand>
        <mrna_strand>TGTTAATAGCAGCCGACAAAATTAAGAATGAGGCACATTCTATTTCGTGTTCCTCCTCCAACCAACACCTCCCACTTCCCTCTGCCCCCCTTACCCCCAAACTACAATCCTCTACATATACATATCTGTATCTAACTCTTAGTATTGCTTCAAGAAAGTTTGATTCAACTTGTAAATTTTCAATTTTGAAAGTTGGGTACTTGTTTTTTTTTGAATTGGGGTTAGCTCCATGTGGGATTCTTGAATTTTGATTTGATGAATTTCCTTCCAAGATGTTTGAGTTACAGTGAATGTAGTGGTGGAGCTGGAAGAAGTGAAATTAGGGGTGGTGAAAGTTCCAATGGTGGATTTGGGAAAGATGGGTTGTTGTGGTTTCATGATATTGGGAATTGTGGGAGTGGGGAATATTCCATGGCTATTGTGCAAGCTAATCAGGTCTTAGAGGATCAGAGCCAGATTGAGTCTGGTCCATTTGGAACTTTTGTTGGAGTCTATGATGGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466671" ref_strand="+" ref_description="SGN-E466671 [cPRO-25-O22]">
      <seq>atcagagccagattgagtctggtccatttggaacttttgttggagtctatgatggtcatggtggacctgaaactgctcgttatgtttgtgatcatttatttcgacatttccaagcaatatcagctgaaggaaatggtgtagtcacagaggagacaattcaaagggcctttcttgagacagagagaggatttacttctgttgtttcggaaaattggcattctcgaccacagctagcgacagtgggggcatgctgcttggttggagctatatatcagcagacactctttgtagcaaatcttggtgactctcgagtagtccttggaaagaaggttggaaacactggggaaattgctgccatacagctatcaacggagcacaatgccaatattgagtctgttaggtgggagctaaaagacttacatccaaatgatcctcaaattgttgttcttagacatggtgtttggagggtaaaaggaataattcaggtctcaagatccattggtgatgtttatcttaaacacacaaggttttgcagggaaccaataaatggaaaattcaaagttcctccacccctttatatgcctatcctgttggccactcccacnattttaaaacatcctctacatccnaatgactccttncctcatattgcttctgatggtctatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="3110" stop="6099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3410" g_stop="3523" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3524" i_stop="4670" i_length="1147">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4671" g_stop="5041" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="485" r_length="371" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="5615" i_length="574">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5616" g_stop="5799" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="669" r_length="184" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E466671" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3410" e_stop="3523"/>
          <exon e_start="4671" e_stop="5041"/>
          <exon e_start="5616" e_stop="5799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAGCCAGATTGAGTCTGGTCCATTTGGAACTTTTGTTGGAGTCTATGATGGTCATGGTGGACCTGAAACTGCTCGTTATGTTTGTGATCACTTATTTCGACATTTCCAAGGTTTATCTTCTTTCTGTTTGTAATTTTTTTTATCTGTTTTATTGGAGAAAAAAAAGATGTTAAATTTGCTACATAGACAATCTTTAGTCAATCTACTGCGGCTCATATCGAAATAAGGATAGTCGATTTAAGTGGGGAATGTTGAATCAAGAATGAAGCAAGAGTAGCCCCAAGTCTTAATTAGTATTAGGATATGTCGATTTAAGTGGGGAAGCTTGAGTCAAGAGTAGCCCAAGTCTAATGAGTATTAGGATATGTTGACTTAAGTGGGGAAGGTTGATTCAAGAATGAGGCAAAACTAGGCTCAAGTCTAATCAGTTGAAGTCACAGGGCGGGGAGGGGGTCCTTGAGTGGATTCCACATTAGTCCCAAGACGTTGGTTTCTAACTAGAAAAGTGATCATTTAAGCTTTAGTGAGGAGGGGCCTTCATGTTTATTGACTTGAACAACTGACCTTTTAAATGAACCTATGAGTCAAAAAGGACTTAACTAAAGGCACCTGCTCAGTTATATGAATCTTTTGTATTCCGCTTAATTCGAGCCTATTTCATTCTAGAACCTTACTAAATTTTGTTTCTGGGAATAATCATAAGGATATGGAAATTCTCCGTGATGTCTGGTAGCAGTTGCATTGTACAACTGAAAAAGATCAACTCTTGAAAATCCCTGTTACAAAAATCCTAACTCTAGGTACCTTCTCTGCAGGTTTCTTGATGAATAGGGTGTGTGGATATTTTAGAGGCATTCTAGTCGAGGGGTTCAATTGCATAACTAGCTTATACCGTAAAGGGTTCCTAAATTATTATATAGAAATTCCTGATATCTACTTTGTTAATGTGTTCATGTAGTGGGTTGGTCTTCATTTGGGCCTTCTGCTCCATTACCATCTATAACTCCCAAAGTCCTAAAACCAGGGGCTTACATCTTCCATTGATTGTTTCCTTTTTCCTCAAAATTTTTGAAATACTGAAATATGTTGGATATATTTTCTTGATAATAGAAATCCGCGAGGGTCAATGGCACACATCATGCACTGCATTCTTAGTACTAGACCAAAGCCCTGAGGGTTACAAATTTGAATTTAGGTGTTGAACATTAGGAAAGGAAAACTTTTGTAGTGGTTTCATGGATTTTACCCTTAATGCAGCAATATCAGCTGAAGGAAATGGTGTAGTCACAGAGGAGACAATTCAAAGGGCCTTTCTTGAGACAGAGAGAGGGTTTACTTCTGTTGTTTCGGAAAATTGGCATTCTCGACCACAACTAGCAACAGTGGGGGCATGCTGCCTGGTTGGAGCTATATATCAGCAGACACTCTTTGTAGCAAATCTTGGTGACTCTCGTGTAGTCCTTGGAAAGAAGGTTGGAAACACTGGAGAAATTGCTGCCATGCAGCTATCAACGGAGCATAATGCCAATATTGAGTCTGTTAGGTGGGAGCAAAAAGACTTGCATCCAAATGATCCTCAAATTGTTGTTCTTAGACATGGTGTTTGGAGGGTAAAAGGAATAATTCAGGTAAGGTCAACTATACGAAAAGTTTCATGTTATTAAATTATGAAAAAAACTTCCAAATTCTCCCTGCATTTCCCATATTCCTATGCTTGTAAAGGATATGCGTAGGTGCTTTGATGTGTATCACGATCTAAAAGAGTAGTCTTATGTGAATAATTTTATTTCTATGGCCACTTACAGTAAATAATTGAGCTTCTGTCGGTCTTCTTTTTTCTGGGGAATTACCATGTTATGTATGGTCATATGGTGTAATAATGAACCCGAGTAAACTGAATTTGGGTAGAAAAGCAGGTTTAAAAACTTTCAAGATGACATCATGTTTTAAAGAAAAATTGATACGCGTCTCGAATATCTACTGTTTCTCATCGATTTTAATATTTTATGTCTTTATCGTTAGGATAAAGAATTCTGTTTTTTGGCTGAAAGTGTCACTAGTCTATGGTTGATCAGTTTGTACCTGTATGTCATACTTTCGAATTGGAGTTCTACAATTGTTGCTTTACATGGATAAAAATTAGAATTCATTCTCTAGTCTGCAACTTATTTCTTAGTAAACAGTCTCCTAAATTGACTGCAGGTCTCAAGATCCATTGGTGATGTTTATCTTAAACACACAAGATTTTGCAGGGAACCAACAAATGGAAAATTCAGAGTTCCTCAACCCCTTAATATGCCTATCCTGTTGGCCACTCCAACAATTTTAAAACATCCTCTACATCCAAATGACTCCTT-CCTCATATTTGCTTCTGATGGTCTATGGG</genome_strand>
        <mrna_strand>ATCAGAGCCAGATTGAGTCTGGTCCATTTGGAACTTTTGTTGGAGTCTATGATGGTCATGGTGGACCTGAAACTGCTCGTTATGTTTGTGATCATTTATTTCGACATTTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATCAGCTGAAGGAAATGGTGTAGTCACAGAGGAGACAATTCAAAGGGCCTTTCTTGAGACAGAGAGAGGATTTACTTCTGTTGTTTCGGAAAATTGGCATTCTCGACCACAGCTAGCGACAGTGGGGGCATGCTGCTTGGTTGGAGCTATATATCAGCAGACACTCTTTGTAGCAAATCTTGGTGACTCTCGAGTAGTCCTTGGAAAGAAGGTTGGAAACACTGGGGAAATTGCTGCCATACAGCTATCAACGGAGCACAATGCCAATATTGAGTCTGTTAGGTGGGAGCTAAAAGACTTACATCCAAATGATCCTCAAATTGTTGTTCTTAGACATGGTGTTTGGAGGGTAAAAGGAATAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGATCCATTGGTGATGTTTATCTTAAACACACAAGGTTTTGCAGGGAACCAATAAATGGAAAATTCAAAGTTCCTCCACCCCTTTATATGCCTATCCTGTTGGCCACTCCCACNATTTTAAAACATCCTCTACATCCNAATGACTCCTTNCCTCATA-TTGCTTCTGATGGTCTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E435614" ref_strand="+" ref_description="SGN-E435614 [STM-61-H12]">
      <seq>atcagagccagattgagtctggtccatttggaacttttgttgtagtctatgatggtcatggtggacctgaaactgctcgttatgtttgtgatcatttatttcgacatttccaagcaatatcagctgaaggaaatggtgtagtcacagaggagacaattcaaagggcctttcttgagacagagagaggatttacttctgttgtttcggaaaattggcattctcgaccacagctagcgacagtgggggcatgctgcttggttggagctatatatcagcagacactctttgtagcaaatcttggtgactctcgagtagtccttggaaagaaggttggaaacactggggaaattgctgccatacagctatcaacggagcacaatgccaatattgagtctgttaggtgggagctaaaagacttacatccaaatgatcctcaaattgttgttcttagacatggtgtttggagggtaaaaggaataattcaggtctcaagatccattggtgatgtttatcttaaacacacaaggttttgcagggaaccaataaatggaaaattcaaagttccctcacccccttatatgcctatcctgttggccactccaacaattttaaaacatcctctacatccaaatgactccttcctcatattttgctctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="3110" stop="6088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3410" g_stop="3523" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3524" i_stop="4670" i_length="1147">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4671" g_stop="5041" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="485" r_length="371" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="5615" i_length="574">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5616" g_stop="5788" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="658" r_length="173" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E435614" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3410" e_stop="3523"/>
          <exon e_start="4671" e_stop="5041"/>
          <exon e_start="5616" e_stop="5788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAGCCAGATTGAGTCTGGTCCATTTGGAACTTTTGTTGGAGTCTATGATGGTCATGGTGGACCTGAAACTGCTCGTTATGTTTGTGATCACTTATTTCGACATTTCCAAGGTTTATCTTCTTTCTGTTTGTAATTTTTTTTATCTGTTTTATTGGAGAAAAAAAAGATGTTAAATTTGCTACATAGACAATCTTTAGTCAATCTACTGCGGCTCATATCGAAATAAGGATAGTCGATTTAAGTGGGGAATGTTGAATCAAGAATGAAGCAAGAGTAGCCCCAAGTCTTAATTAGTATTAGGATATGTCGATTTAAGTGGGGAAGCTTGAGTCAAGAGTAGCCCAAGTCTAATGAGTATTAGGATATGTTGACTTAAGTGGGGAAGGTTGATTCAAGAATGAGGCAAAACTAGGCTCAAGTCTAATCAGTTGAAGTCACAGGGCGGGGAGGGGGTCCTTGAGTGGATTCCACATTAGTCCCAAGACGTTGGTTTCTAACTAGAAAAGTGATCATTTAAGCTTTAGTGAGGAGGGGCCTTCATGTTTATTGACTTGAACAACTGACCTTTTAAATGAACCTATGAGTCAAAAAGGACTTAACTAAAGGCACCTGCTCAGTTATATGAATCTTTTGTATTCCGCTTAATTCGAGCCTATTTCATTCTAGAACCTTACTAAATTTTGTTTCTGGGAATAATCATAAGGATATGGAAATTCTCCGTGATGTCTGGTAGCAGTTGCATTGTACAACTGAAAAAGATCAACTCTTGAAAATCCCTGTTACAAAAATCCTAACTCTAGGTACCTTCTCTGCAGGTTTCTTGATGAATAGGGTGTGTGGATATTTTAGAGGCATTCTAGTCGAGGGGTTCAATTGCATAACTAGCTTATACCGTAAAGGGTTCCTAAATTATTATATAGAAATTCCTGATATCTACTTTGTTAATGTGTTCATGTAGTGGGTTGGTCTTCATTTGGGCCTTCTGCTCCATTACCATCTATAACTCCCAAAGTCCTAAAACCAGGGGCTTACATCTTCCATTGATTGTTTCCTTTTTCCTCAAAATTTTTGAAATACTGAAATATGTTGGATATATTTTCTTGATAATAGAAATCCGCGAGGGTCAATGGCACACATCATGCACTGCATTCTTAGTACTAGACCAAAGCCCTGAGGGTTACAAATTTGAATTTAGGTGTTGAACATTAGGAAAGGAAAACTTTTGTAGTGGTTTCATGGATTTTACCCTTAATGCAGCAATATCAGCTGAAGGAAATGGTGTAGTCACAGAGGAGACAATTCAAAGGGCCTTTCTTGAGACAGAGAGAGGGTTTACTTCTGTTGTTTCGGAAAATTGGCATTCTCGACCACAACTAGCAACAGTGGGGGCATGCTGCCTGGTTGGAGCTATATATCAGCAGACACTCTTTGTAGCAAATCTTGGTGACTCTCGTGTAGTCCTTGGAAAGAAGGTTGGAAACACTGGAGAAATTGCTGCCATGCAGCTATCAACGGAGCATAATGCCAATATTGAGTCTGTTAGGTGGGAGCAAAAAGACTTGCATCCAAATGATCCTCAAATTGTTGTTCTTAGACATGGTGTTTGGAGGGTAAAAGGAATAATTCAGGTAAGGTCAACTATACGAAAAGTTTCATGTTATTAAATTATGAAAAAAACTTCCAAATTCTCCCTGCATTTCCCATATTCCTATGCTTGTAAAGGATATGCGTAGGTGCTTTGATGTGTATCACGATCTAAAAGAGTAGTCTTATGTGAATAATTTTATTTCTATGGCCACTTACAGTAAATAATTGAGCTTCTGTCGGTCTTCTTTTTTCTGGGGAATTACCATGTTATGTATGGTCATATGGTGTAATAATGAACCCGAGTAAACTGAATTTGGGTAGAAAAGCAGGTTTAAAAACTTTCAAGATGACATCATGTTTTAAAGAAAAATTGATACGCGTCTCGAATATCTACTGTTTCTCATCGATTTTAATATTTTATGTCTTTATCGTTAGGATAAAGAATTCTGTTTTTTGGCTGAAAGTGTCACTAGTCTATGGTTGATCAGTTTGTACCTGTATGTCATACTTTCGAATTGGAGTTCTACAATTGTTGCTTTACATGGATAAAAATTAGAATTCATTCTCTAGTCTGCAACTTATTTCTTAGTAAACAGTCTCCTAAATTGACTGCAGGTCTCAAGATCCATTGGTGATGTTTATCTTAAACACACAAGATTTTGCAGGGAACCAACAAATGGAAAATTCAGAGTT-CCTCAACCCCTTAATATGCCTATCCTGTTGGCCACTCCAACAATTTTAAAACATCCTCTACATCCAAATGACTCCTTCCTCATATTTGCTTCTGA</genome_strand>
        <mrna_strand>ATCAGAGCCAGATTGAGTCTGGTCCATTTGGAACTTTTGTTGTAGTCTATGATGGTCATGGTGGACCTGAAACTGCTCGTTATGTTTGTGATCATTTATTTCGACATTTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATCAGCTGAAGGAAATGGTGTAGTCACAGAGGAGACAATTCAAAGGGCCTTTCTTGAGACAGAGAGAGGATTTACTTCTGTTGTTTCGGAAAATTGGCATTCTCGACCACAGCTAGCGACAGTGGGGGCATGCTGCTTGGTTGGAGCTATATATCAGCAGACACTCTTTGTAGCAAATCTTGGTGACTCTCGAGTAGTCCTTGGAAAGAAGGTTGGAAACACTGGGGAAATTGCTGCCATACAGCTATCAACGGAGCACAATGCCAATATTGAGTCTGTTAGGTGGGAGCTAAAAGACTTACATCCAAATGATCCTCAAATTGTTGTTCTTAGACATGGTGTTTGGAGGGTAAAAGGAATAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGATCCATTGGTGATGTTTATCTTAAACACACAAGGTTTTGCAGGGAACCAATAAATGGAAAATTCAAAGTTCCCTCACCCCCTT-ATATGCCTATCCTGTTGGCCACTCCAACAATTTTAAAACATCCTCTACATCCAAATGACTCCTTCCTCATATTTTGCTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538023" ref_strand="+" ref_description="SGN-E538023 [TUS-56-O20]">
      <seq>gtttgtgatcacttatttcgacatttccaagcaatatcagctgaaggaaatggtgtagtcacagaggagacaattcaaagggcctttcttgagacagagagagggtttacttctgttgtttcggaaaattggcattctcgaccacaactagcaacagtgggggcatgctgcctggttggagctatatatcagcagacactctttgtagcaaatcttggtgactctcgtgtagtccttggaaagaaggttggaaacactggagaaattgctgccatgcagctatcaacggagcataatgccaatattgagtctgttaggtgggagcaaaaagacttgcatccaaatgatcctcaaattgttgttcttagacatggtgtttggagggtaaaaggaataattcaggtctcaagatccattggtgatgtttatcttaaacacacaagattttgcagggaaccaacaaatggaaaattcagagttcctcaaccccttaatatgcctatcctgttggccactccaacaattttaaaacatcctctacatccaaatgactccttcctcatatttgcttctgatggtctatgggagcacttgagcaatgaaaaggccgttgaaattgtgaagagtcaccctcgtaaaggaagtgcaaagaggcttgtcaaggctgctctccatgtagctgccaaaaaaagagagatgcgatattctgatcttcgaaacattgacaaaaaggtccgacgtcattttcacgatgatataactgtaattattttattcttaaacatgacctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="3193" stop="7605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3493" g_stop="3523" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3524" i_stop="4670" i_length="1147">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4671" g_stop="5041" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="402" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="5615" i_length="574">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5616" g_stop="5852" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="639" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5853" i_stop="7150" i_length="1298">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7151" g_stop="7305" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="793" r_length="154" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E538023" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3493" e_stop="3523"/>
          <exon e_start="4671" e_stop="5041"/>
          <exon e_start="5616" e_stop="5852"/>
          <exon e_start="7151" e_stop="7305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTGATCACTTATTTCGACATTTCCAAGGTTTATCTTCTTTCTGTTTGTAATTTTTTTTATCTGTTTTATTGGAGAAAAAAAAGATGTTAAATTTGCTACATAGACAATCTTTAGTCAATCTACTGCGGCTCATATCGAAATAAGGATAGTCGATTTAAGTGGGGAATGTTGAATCAAGAATGAAGCAAGAGTAGCCCCAAGTCTTAATTAGTATTAGGATATGTCGATTTAAGTGGGGAAGCTTGAGTCAAGAGTAGCCCAAGTCTAATGAGTATTAGGATATGTTGACTTAAGTGGGGAAGGTTGATTCAAGAATGAGGCAAAACTAGGCTCAAGTCTAATCAGTTGAAGTCACAGGGCGGGGAGGGGGTCCTTGAGTGGATTCCACATTAGTCCCAAGACGTTGGTTTCTAACTAGAAAAGTGATCATTTAAGCTTTAGTGAGGAGGGGCCTTCATGTTTATTGACTTGAACAACTGACCTTTTAAATGAACCTATGAGTCAAAAAGGACTTAACTAAAGGCACCTGCTCAGTTATATGAATCTTTTGTATTCCGCTTAATTCGAGCCTATTTCATTCTAGAACCTTACTAAATTTTGTTTCTGGGAATAATCATAAGGATATGGAAATTCTCCGTGATGTCTGGTAGCAGTTGCATTGTACAACTGAAAAAGATCAACTCTTGAAAATCCCTGTTACAAAAATCCTAACTCTAGGTACCTTCTCTGCAGGTTTCTTGATGAATAGGGTGTGTGGATATTTTAGAGGCATTCTAGTCGAGGGGTTCAATTGCATAACTAGCTTATACCGTAAAGGGTTCCTAAATTATTATATAGAAATTCCTGATATCTACTTTGTTAATGTGTTCATGTAGTGGGTTGGTCTTCATTTGGGCCTTCTGCTCCATTACCATCTATAACTCCCAAAGTCCTAAAACCAGGGGCTTACATCTTCCATTGATTGTTTCCTTTTTCCTCAAAATTTTTGAAATACTGAAATATGTTGGATATATTTTCTTGATAATAGAAATCCGCGAGGGTCAATGGCACACATCATGCACTGCATTCTTAGTACTAGACCAAAGCCCTGAGGGTTACAAATTTGAATTTAGGTGTTGAACATTAGGAAAGGAAAACTTTTGTAGTGGTTTCATGGATTTTACCCTTAATGCAGCAATATCAGCTGAAGGAAATGGTGTAGTCACAGAGGAGACAATTCAAAGGGCCTTTCTTGAGACAGAGAGAGGGTTTACTTCTGTTGTTTCGGAAAATTGGCATTCTCGACCACAACTAGCAACAGTGGGGGCATGCTGCCTGGTTGGAGCTATATATCAGCAGACACTCTTTGTAGCAAATCTTGGTGACTCTCGTGTAGTCCTTGGAAAGAAGGTTGGAAACACTGGAGAAATTGCTGCCATGCAGCTATCAACGGAGCATAATGCCAATATTGAGTCTGTTAGGTGGGAGCAAAAAGACTTGCATCCAAATGATCCTCAAATTGTTGTTCTTAGACATGGTGTTTGGAGGGTAAAAGGAATAATTCAGGTAAGGTCAACTATACGAAAAGTTTCATGTTATTAAATTATGAAAAAAACTTCCAAATTCTCCCTGCATTTCCCATATTCCTATGCTTGTAAAGGATATGCGTAGGTGCTTTGATGTGTATCACGATCTAAAAGAGTAGTCTTATGTGAATAATTTTATTTCTATGGCCACTTACAGTAAATAATTGAGCTTCTGTCGGTCTTCTTTTTTCTGGGGAATTACCATGTTATGTATGGTCATATGGTGTAATAATGAACCCGAGTAAACTGAATTTGGGTAGAAAAGCAGGTTTAAAAACTTTCAAGATGACATCATGTTTTAAAGAAAAATTGATACGCGTCTCGAATATCTACTGTTTCTCATCGATTTTAATATTTTATGTCTTTATCGTTAGGATAAAGAATTCTGTTTTTTGGCTGAAAGTGTCACTAGTCTATGGTTGATCAGTTTGTACCTGTATGTCATACTTTCGAATTGGAGTTCTACAATTGTTGCTTTACATGGATAAAAATTAGAATTCATTCTCTAGTCTGCAACTTATTTCTTAGTAAACAGTCTCCTAAATTGACTGCAGGTCTCAAGATCCATTGGTGATGTTTATCTTAAACACACAAGATTTTGCAGGGAACCAACAAATGGAAAATTCAGAGTTCCTCAACCCCTTAATATGCCTATCCTGTTGGCCACTCCAACAATTTTAAAACATCCTCTACATCCAAATGACTCCTTCCTCATATTTGCTTCTGATGGTCTATGGGAGCACTTGAGCAATGAAAAGGCCGTTGAAATTGTGAAGAGTCACCCTCGTAAAGTAAGTTCTATGCACCAAACCATTATACTTTCCTTCTTATTCTGTTCAATTTAAGCTAATATGCTTCTTATGGGCAAACTATGACTTCAAATACATGTTTGCTTTTGATGATATACATAATTTTTATTTTTATTTTGATAATTCAAGGATAATTTTCAGTAACTACCAAGTATGTAGAAGTCTATAAAATCAAAGCGCATCAAACTACTGTAACTTAACCATCTATTAAGAGGAATACTGTATTCTTCTTACACTAAAGGCAAACCACACAGAAAACAAAAGAGATAGATATATATGCTAACCAAATCGGCAATCACACAGTGATATACATCCAGTGTACTAAATTGGACCATCCAAGAGTCAACTTCCTCATACACTCCATAAGTGCTTGTCTATACCAGCATAAGTACACATCCTACGATCACCCTCATGATTTCTGAATGATATCTTCAGACGTTACTTCTCTTTTAGGTTTTCAAGCTCTCTGGCATTCCCCATTAGATTTCAGCAACTTGTAGATGACTTCTCTAATGTCTTTCCATTATTTATACCCTGAATTTTCTCCTTAATTATTCCTTCATAATTTTATTGAAAAGTCGATCTCTTTAGCACCAAATAATCAGGTTTTCAGGTGAGAAGATGCTTTCACCTTCCAAGTTCTATTCTCCTTGTGATCTCTTTCAATTTCTGCGAGTAGGTGTGATGCCTCTTTGTGATGTCTTTTAAATGAAATGCTCAGACCTTCCAAATCTAGTTTGAAATGGGATCATTTGTTCCTACGGTGTATATTTTATTTTTATGGTGAATGGTGAAAGAAAAAGTAACAGAAGTGTACCAAAGATATCATGTATTTTCCAAAAGAGCTCTGTAACATATGAATGATAATCAAATGTTACTTTGATCTTGGGAGCACACCAGTGATTGAAGCCACTCAAGCTGTGGCCCTGCCTTGAAATTCCATTTGATTTACTCACAGTTATATCATCTTTACTCTCCATACTAACAACCCTGTAAACTCAGTACCATGCCAAATGACATAACTCTTATCCTTTTACTCTTCATGGTTCAATTTATTAATTAAGGCTTCCCTTCGAGATCCTCTCTCTCTCTCTCTCTATATATATATATATATATATCTTTCTCTTTGTTGAAGTGTATAAACACATGCCGGACATTTTGACTCTTTTAAAGAGATGGTTTTAGCTCGTTGTCCCTTCTGATGTATTTTGGTATGCACTCTTGAACGTGAAAATAAATCTGCTCACTTTTTCATGCTCATATTTTTCTTGCAAATACAGGGAAGTGCAAAGAGGCTTGTCAAGGCTGCTCTCCATGTAGCTGCCAAAAAAAGAGAGATGCGATATTCTGATCTTCGAAACATTGACAAAAAGGTCCGACGTCATTTTCACGATGATATAACTGTAATTATTTTATTCTTAAACCATGACCTGAT</genome_strand>
        <mrna_strand>GTTTGTGATCACTTATTTCGACATTTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATCAGCTGAAGGAAATGGTGTAGTCACAGAGGAGACAATTCAAAGGGCCTTTCTTGAGACAGAGAGAGGGTTTACTTCTGTTGTTTCGGAAAATTGGCATTCTCGACCACAACTAGCAACAGTGGGGGCATGCTGCCTGGTTGGAGCTATATATCAGCAGACACTCTTTGTAGCAAATCTTGGTGACTCTCGTGTAGTCCTTGGAAAGAAGGTTGGAAACACTGGAGAAATTGCTGCCATGCAGCTATCAACGGAGCATAATGCCAATATTGAGTCTGTTAGGTGGGAGCAAAAAGACTTGCATCCAAATGATCCTCAAATTGTTGTTCTTAGACATGGTGTTTGGAGGGTAAAAGGAATAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGATCCATTGGTGATGTTTATCTTAAACACACAAGATTTTGCAGGGAACCAACAAATGGAAAATTCAGAGTTCCTCAACCCCTTAATATGCCTATCCTGTTGGCCACTCCAACAATTTTAAAACATCCTCTACATCCAAATGACTCCTTCCTCATATTTGCTTCTGATGGTCTATGGGAGCACTTGAGCAATGAAAAGGCCGTTGAAATTGTGAAGAGTCACCCTCGTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCAAAGAGGCTTGTCAAGGCTGCTCTCCATGTAGCTGCCAAAAAAAGAGAGATGCGATATTCTGATCTTCGAAACATTGACAAAAAGGTCCGACGTCATTTTCACGATGATATAACTGTAATTATTTTATTCTTAAA-CATGACCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267748" ref_strand="+" ref_description="SGN-E267748 [cLEI-12-J21]">
      <seq>tttgtgatcacttatttcgacatttccaagcaatatcagctgaaggaaatggtgtagtcacagaggagacaattcaaagggcctttcttgagacagagagagggtttacttctgttgtttcggaaaattggcattctcgaccacaactagcaacagtgggggcatgctgcctggttggagctatatatcagcagacactctttgtagcaaatcttggtgactctcgtgtagtccttggaaagaaggttggaaacactggagaaattgctgccatgcagctatcaacggagcataatgccaatattgagtctgttaggtgggagcaaaaagacttgcatccaaatgatcctcaaattgttgttcttagacatggtgtttggagggtaaaaggaataattcaggtctcaagatccattggtgatgtttatcttaaacacacaagattttgcagggaaccaacaaatggaaaattcagagttcctcaaccccttaatatgcctatcctgttggccactccaacaattttaaaacatcctctacatccaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="3194" stop="6065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3494" g_stop="3523" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3524" i_stop="4670" i_length="1147">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4671" g_stop="5041" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="401" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5042" i_stop="5615" i_length="574">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5616" g_stop="5765" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="551" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E267748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3494" e_stop="3523"/>
          <exon e_start="4671" e_stop="5041"/>
          <exon e_start="5616" e_stop="5765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGATCACTTATTTCGACATTTCCAAGGTTTATCTTCTTTCTGTTTGTAATTTTTTTTATCTGTTTTATTGGAGAAAAAAAAGATGTTAAATTTGCTACATAGACAATCTTTAGTCAATCTACTGCGGCTCATATCGAAATAAGGATAGTCGATTTAAGTGGGGAATGTTGAATCAAGAATGAAGCAAGAGTAGCCCCAAGTCTTAATTAGTATTAGGATATGTCGATTTAAGTGGGGAAGCTTGAGTCAAGAGTAGCCCAAGTCTAATGAGTATTAGGATATGTTGACTTAAGTGGGGAAGGTTGATTCAAGAATGAGGCAAAACTAGGCTCAAGTCTAATCAGTTGAAGTCACAGGGCGGGGAGGGGGTCCTTGAGTGGATTCCACATTAGTCCCAAGACGTTGGTTTCTAACTAGAAAAGTGATCATTTAAGCTTTAGTGAGGAGGGGCCTTCATGTTTATTGACTTGAACAACTGACCTTTTAAATGAACCTATGAGTCAAAAAGGACTTAACTAAAGGCACCTGCTCAGTTATATGAATCTTTTGTATTCCGCTTAATTCGAGCCTATTTCATTCTAGAACCTTACTAAATTTTGTTTCTGGGAATAATCATAAGGATATGGAAATTCTCCGTGATGTCTGGTAGCAGTTGCATTGTACAACTGAAAAAGATCAACTCTTGAAAATCCCTGTTACAAAAATCCTAACTCTAGGTACCTTCTCTGCAGGTTTCTTGATGAATAGGGTGTGTGGATATTTTAGAGGCATTCTAGTCGAGGGGTTCAATTGCATAACTAGCTTATACCGTAAAGGGTTCCTAAATTATTATATAGAAATTCCTGATATCTACTTTGTTAATGTGTTCATGTAGTGGGTTGGTCTTCATTTGGGCCTTCTGCTCCATTACCATCTATAACTCCCAAAGTCCTAAAACCAGGGGCTTACATCTTCCATTGATTGTTTCCTTTTTCCTCAAAATTTTTGAAATACTGAAATATGTTGGATATATTTTCTTGATAATAGAAATCCGCGAGGGTCAATGGCACACATCATGCACTGCATTCTTAGTACTAGACCAAAGCCCTGAGGGTTACAAATTTGAATTTAGGTGTTGAACATTAGGAAAGGAAAACTTTTGTAGTGGTTTCATGGATTTTACCCTTAATGCAGCAATATCAGCTGAAGGAAATGGTGTAGTCACAGAGGAGACAATTCAAAGGGCCTTTCTTGAGACAGAGAGAGGGTTTACTTCTGTTGTTTCGGAAAATTGGCATTCTCGACCACAACTAGCAACAGTGGGGGCATGCTGCCTGGTTGGAGCTATATATCAGCAGACACTCTTTGTAGCAAATCTTGGTGACTCTCGTGTAGTCCTTGGAAAGAAGGTTGGAAACACTGGAGAAATTGCTGCCATGCAGCTATCAACGGAGCATAATGCCAATATTGAGTCTGTTAGGTGGGAGCAAAAAGACTTGCATCCAAATGATCCTCAAATTGTTGTTCTTAGACATGGTGTTTGGAGGGTAAAAGGAATAATTCAGGTAAGGTCAACTATACGAAAAGTTTCATGTTATTAAATTATGAAAAAAACTTCCAAATTCTCCCTGCATTTCCCATATTCCTATGCTTGTAAAGGATATGCGTAGGTGCTTTGATGTGTATCACGATCTAAAAGAGTAGTCTTATGTGAATAATTTTATTTCTATGGCCACTTACAGTAAATAATTGAGCTTCTGTCGGTCTTCTTTTTTCTGGGGAATTACCATGTTATGTATGGTCATATGGTGTAATAATGAACCCGAGTAAACTGAATTTGGGTAGAAAAGCAGGTTTAAAAACTTTCAAGATGACATCATGTTTTAAAGAAAAATTGATACGCGTCTCGAATATCTACTGTTTCTCATCGATTTTAATATTTTATGTCTTTATCGTTAGGATAAAGAATTCTGTTTTTTGGCTGAAAGTGTCACTAGTCTATGGTTGATCAGTTTGTACCTGTATGTCATACTTTCGAATTGGAGTTCTACAATTGTTGCTTTACATGGATAAAAATTAGAATTCATTCTCTAGTCTGCAACTTATTTCTTAGTAAACAGTCTCCTAAATTGACTGCAGGTCTCAAGATCCATTGGTGATGTTTATCTTAAACACACAAGATTTTGCAGGGAACCAACAAATGGAAAATTCAGAGTTCCTCAACCCCTTAATATGCCTATCCTGTTGGCCACTCCAACAATTTTAAAACATCCTCTACATCCAAATGAC</genome_strand>
        <mrna_strand>TTTGTGATCACTTATTTCGACATTTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATCAGCTGAAGGAAATGGTGTAGTCACAGAGGAGACAATTCAAAGGGCCTTTCTTGAGACAGAGAGAGGGTTTACTTCTGTTGTTTCGGAAAATTGGCATTCTCGACCACAACTAGCAACAGTGGGGGCATGCTGCCTGGTTGGAGCTATATATCAGCAGACACTCTTTGTAGCAAATCTTGGTGACTCTCGTGTAGTCCTTGGAAAGAAGGTTGGAAACACTGGAGAAATTGCTGCCATGCAGCTATCAACGGAGCATAATGCCAATATTGAGTCTGTTAGGTGGGAGCAAAAAGACTTGCATCCAAATGATCCTCAAATTGTTGTTCTTAGACATGGTGTTTGGAGGGTAAAAGGAATAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGATCCATTGGTGATGTTTATCTTAAACACACAAGATTTTGCAGGGAACCAACAAATGGAAAATTCAGAGTTCCTCAACCCCTTAATATGCCTATCCTGTTGGCCACTCCAACAATTTTAAAACATCCTCTACATCCAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E435615" ref_strand="-" ref_description="SGN-E435615 [STM-61-H12]">
      <seq>gagcaatgaaaaggccgttgaaattgtgaagagtcaccctcataaaggaagtgcaaagaggcttgtcaaggctgctctccatatagctgccaaaaagagagagatgcgatattctgatcttcgaaacattgacaaaaaggtccgacgtcattttcatgatgatataactgtaattattttattcttaaaccatgacctgatatgtagaggcgttgtgcaagatccagcactttctattcgcagtgctttagaacactgattgttgaaggaatatattattttttactagtgcctgaggttctgtcacaacaccaaaattttccttgatatgcggttccggagcagcatcagtgaagcaactacgctgtataagagtgtttttttcctttgaagaggcttataatttgaatttcttaaaccttgttataggtggagttcaagaagaatgctaattcaaaagttttggatacagtcaacctctatgtaacagccttgtttcattattaatttattctgtatactagtttttgtttctggattctggagtattttgttaatttcttgtaacattgccgcctgttacaagtgttaaaaggaaatggttcgccacaagagaatgatggcttttgaattaaaagaggatgttgctgcggtcttattgtttaattggaagaaatttatttcccttagaagagaacaattatttgaccaatcaaacaagctcgcttgaatttaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="5507" stop="8139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5807" g_stop="5852" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5853" i_stop="7150" i_length="1298">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7151" g_stop="7838" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="735" r_length="689" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="736" polyA_stop="753"/>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E435615" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435615" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5807" e_stop="5852"/>
          <exon e_start="7151" e_stop="7838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAATGAAAAGGCCGTTGAAATTGTGAAGAGTCACCCTCGTAAAGTAAGTTCTATGCACCAAACCATTATACTTTCCTTCTTATTCTGTTCAATTTAAGCTAATATGCTTCTTATGGGCAAACTATGACTTCAAATACATGTTTGCTTTTGATGATATACATAATTTTTATTTTTATTTTGATAATTCAAGGATAATTTTCAGTAACTACCAAGTATGTAGAAGTCTATAAAATCAAAGCGCATCAAACTACTGTAACTTAACCATCTATTAAGAGGAATACTGTATTCTTCTTACACTAAAGGCAAACCACACAGAAAACAAAAGAGATAGATATATATGCTAACCAAATCGGCAATCACACAGTGATATACATCCAGTGTACTAAATTGGACCATCCAAGAGTCAACTTCCTCATACACTCCATAAGTGCTTGTCTATACCAGCATAAGTACACATCCTACGATCACCCTCATGATTTCTGAATGATATCTTCAGACGTTACTTCTCTTTTAGGTTTTCAAGCTCTCTGGCATTCCCCATTAGATTTCAGCAACTTGTAGATGACTTCTCTAATGTCTTTCCATTATTTATACCCTGAATTTTCTCCTTAATTATTCCTTCATAATTTTATTGAAAAGTCGATCTCTTTAGCACCAAATAATCAGGTTTTCAGGTGAGAAGATGCTTTCACCTTCCAAGTTCTATTCTCCTTGTGATCTCTTTCAATTTCTGCGAGTAGGTGTGATGCCTCTTTGTGATGTCTTTTAAATGAAATGCTCAGACCTTCCAAATCTAGTTTGAAATGGGATCATTTGTTCCTACGGTGTATATTTTATTTTTATGGTGAATGGTGAAAGAAAAAGTAACAGAAGTGTACCAAAGATATCATGTATTTTCCAAAAGAGCTCTGTAACATATGAATGATAATCAAATGTTACTTTGATCTTGGGAGCACACCAGTGATTGAAGCCACTCAAGCTGTGGCCCTGCCTTGAAATTCCATTTGATTTACTCACAGTTATATCATCTTTACTCTCCATACTAACAACCCTGTAAACTCAGTACCATGCCAAATGACATAACTCTTATCCTTTTACTCTTCATGGTTCAATTTATTAATTAAGGCTTCCCTTCGAGATCCTCTCTCTCTCTCTCTCTATATATATATATATATATATCTTTCTCTTTGTTGAAGTGTATAAACACATGCCGGACATTTTGACTCTTTTAAAGAGATGGTTTTAGCTCGTTGTCCCTTCTGATGTATTTTGGTATGCACTCTTGAACGTGAAAATAAATCTGCTCACTTTTTCATGCTCATATTTTTCTTGCAAATACAGGGAAGTGCAAAGAGGCTTGTCAAGGCTGCTCTCCATGTAGCTGCCAAAAAAAGAGAGATGCGATATTCTGATCTTCGAAACATTGACAAAAAGGTCCGACGTCATTTTCACGATGATATAACTGTAATTATTTTATTCTTAAACCATGACCTGATATGTAGAGGCGTTGTGCAAGATCCAACACTTTCTATTCGGAGTGCTTTAGAACACTGATTGTTGAAGGAATATATTATTTTTTACTAGTGCCTGAGGTTCTGTCACAACACCAAAATTTTCCTTGATATGCGGCTCCGGAGCAGCATCAGTGAAGCAACTACACTGTATGAGAGTGTTTTTTTCCTTTGAAGAGGCTTATAATTTGAATTTCTCAAACCTTGTTATAGGTGGAGTTCAAGAAGAATGCTAATTCAAAAGTTTCGGATACAGTCAACCTCTATGTAACAGCCTTGTTTCATTATTAATTTGTTCTGTACACTAGTTTTTATTT-TGGATTCTGGAGTATTTTGTTAATTTCTTGCAACATTATCGCCTGTTACAAGTGTAAAAAGGAAAAAGTTCGCCACAAGAGAATGATGGCTTTTGAATTAAAAGAGGATGCTGCTGCGGTCTTATCGTTTAATTGGAAGAACTTTATTTCCCTTAGAAGAGAACAATTGTTTGACCAATCAAACGAGCTCGCTTGAATTTA</genome_strand>
        <mrna_strand>GAGCAATGAAAAGGCCGTTGAAATTGTGAAGAGTCACCCTCATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCAAAGAGGCTTGTCAAGGCTGCTCTCCATATAGCTGCCAAAAAGAGAGAGATGCGATATTCTGATCTTCGAAACATTGACAAAAAGGTCCGACGTCATTTTCATGATGATATAACTGTAATTATTTTATTCTTAAACCATGACCTGATATGTAGAGGCGTTGTGCAAGATCCAGCACTTTCTATTCGCAGTGCTTTAGAACACTGATTGTTGAAGGAATATATTATTTTTTACTAGTGCCTGAGGTTCTGTCACAACACCAAAATTTTCCTTGATATGCGGTTCCGGAGCAGCATCAGTGAAGCAACTACGCTGTATAAGAGTGTTTTTTTCCTTTGAAGAGGCTTATAATTTGAATTTCTTAAACCTTGTTATAGGTGGAGTTCAAGAAGAATGCTAATTCAAAAGTTTTGGATACAGTCAACCTCTATGTAACAGCCTTGTTTCATTATTAATTTATTCTGTATACTAGTTTTTGTTTCTGGATTCTGGAGTATTTTGTTAATTTCTTGTAACATTGCCGCCTGTTACAAGTGTTAAAAGGAAATGGTTCGCCACAAGAGAATGATGGCTTTTGAATTAAAAGAGGATGTTGCTGCGGTCTTATTGTTTAATTGGAAGAAATTTATTTCCCTTAGAAGAGAACAATTATTTGACCAATCAAACAAGCTCGCTTGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342927" ref_strand="+" ref_description="SGN-E342927 [cTOF-11-G2]">
      <seq>tagcaacctgaagtgtacatacaggctgataagaaaaatatggtgcgtagactgaagaagagtctctatggtttgaaacaagcaccaagaccatacttaaagtttggcaggtttatgatgactattggcttacttggtataatgatgatcactgttcttacttcaagaaatttataaattcgtacatcactttgctcctgtatatggatgatatgttggtgacaggttaaaacatgtgtgggatcacaaaactgaaggagcaaatgtctagtgaattttttgataaagaatttgggactggaaattgaaagagacaggttgaagctgagtcagaagaaatagattgaaaaaataattcttaaagaggctaaacatttgggatgccaagttggtgcacttcaagaaaatctgaaagcaagtcctttggcaggtcacttgaattgggattgtttttggcaagcgtagaagttaactttgtttgaaagaaagaatcttgagacacaggtttcatagaggagcagattacaaagtgttgctttattgcagaagttgatttggtgagctccacccttcaccgtggaatttcttcttttttcagttagaattttttttaattcagtttttggggaatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="18253" stop="16397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17953" g_stop="17456" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17455" i_stop="16833" i_length="623">
            <donor d_prob="0.635" d_score="1.00"/>
            <acceptor a_prob="0.212" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16832" g_stop="16697" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="634" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E342927" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17953" e_stop="17456"/>
          <exon e_start="16832" e_stop="16697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAACCTGAAGTGTACATACAGGCTGATAAGAAAAATATGGTGCGTAGACTGAAGAAGAGTCTCTATGGTTTGAAACAAGCACCAAGACCATACTTAAAGTTTGGCAGGTTTATGATGACTATTGGCTTACTTGGTATAATGATGATCACTGTTCTTACTTCAAGAAATTTATAAATTCGTACATCACTTTGCTCCTGTATATGGATGATATGTTGGTGACAGGTTAAAACATGTGTGGGATCACAAAACTGAAGGAGCAAATGTCTAGTGAATTTTTTGATAAAGAATTTGGGACTGGAAATTGAAAGAGACAGGTTGAAGCTGAGTCAGAAGAAATAGATTGAAAAAATAATTCTTAAAGAGGCTAAACATTTGGGATGCCAAGTTGGTGCACTTCAAGAAAATCTGAAAGCAAGTCCTTTGGCAGGTCACTTGAATTGGGATTGTTTTTGGCAAGCGTAGAAGTTAACTTTGTTTGAAAGAAAGAATCTTGAGGTGAGTTGCGACTTGTTCTTACTAAAGTTCTTTCCTGAAGAGATCATGTCCCATAAGTTATTTGAATTAATGTTTCTAAAGTATTAATGTGAGCTAAACTGGAATGAGTGAGCTCACATTGCGCATCATTGAATGAGTCTTTCTCGTGCTCTATTTTCTGCTTTGTGTTTATCCGTCTAATGGAAGTCTACTTATTTGTGTATGAGTGCTTTGTGGTAACTCTTTTCAGCCCTAAAACAGTACCTAATTCCCTGGAAAGATGACCAAGAAAAGACAACATATCCCATCAAGAATTGTGTCGTCTTTCATAGTGACAACAGCCATAATGTACTCTCTTATGCATGGTTATGATAAAGATAAAATGTAAAAAACTTCAATGCGAAATTTTAATAAATGGCAATCGTATAAAGATTACTAACTTTAAGGGATTAACATGAATGATGATCCATATAAAGAGTCATCGAGCATCCATATTTGTATTTTCTTTCTTATCCGTTCATCAAGTACATGTTTTCATCTTATGCCTTGGTTTGAGTTCATTGAGGAGAACGCTGAGACCTCTACTGTCAGTAGTATACTGACGTTCTCTTTTGTGGATTCTATATTGACCTATGCCAATATAGACACAGGTTTCATAGAGGAGCAGATTACAAAGTGTTGCTTTATTGCAGAAGTTGATTTGGTGAGCTCCACCCTTCACCGTGGAATTTCTTCTTTTTTCAGTTAGAATTTTTTTTAATTCAGTTTTTGGGGAATAGC</genome_strand>
        <mrna_strand>TAGCAACCTGAAGTGTACATACAGGCTGATAAGAAAAATATGGTGCGTAGACTGAAGAAGAGTCTCTATGGTTTGAAACAAGCACCAAGACCATACTTAAAGTTTGGCAGGTTTATGATGACTATTGGCTTACTTGGTATAATGATGATCACTGTTCTTACTTCAAGAAATTTATAAATTCGTACATCACTTTGCTCCTGTATATGGATGATATGTTGGTGACAGGTTAAAACATGTGTGGGATCACAAAACTGAAGGAGCAAATGTCTAGTGAATTTTTTGATAAAGAATTTGGGACTGGAAATTGAAAGAGACAGGTTGAAGCTGAGTCAGAAGAAATAGATTGAAAAAATAATTCTTAAAGAGGCTAAACATTTGGGATGCCAAGTTGGTGCACTTCAAGAAAATCTGAAAGCAAGTCCTTTGGCAGGTCACTTGAATTGGGATTGTTTTTGGCAAGCGTAGAAGTTAACTTTGTTTGAAAGAAAGAATCTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGGTTTCATAGAGGAGCAGATTACAAAGTGTTGCTTTATTGCAGAAGTTGATTTGGTGAGCTCCACCCTTCACCGTGGAATTTCTTCTTTTTTCAGTTAGAATTTTTTTTAATTCAGTTTTTGGGGAATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366932" ref_strand="+" ref_description="SGN-E366932 [cLPT-6-M19](-)">
      <seq>gacttgttcttactcaagttctttcctgaagagatcatgccccataagttatttgaattaatgtttctaaggtattaatgtgagctaaactgtaatgagtgagttcacactgcacatcattgaatgagtctttctcgtgctctatcttcttctttgtagtaactcttttcaaccataaatcagttcgtaattccctggaaagatgaccaagcaaatacgacatatcccatcaatctttgtgtaatctttcatagtgacaacagccataatgtactctcttatgcatggttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="17746" stop="16805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17446" g_stop="17292" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17291" i_stop="17242" i_length="50">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.81"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17241" g_stop="17105" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="294" r_length="139" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E366932" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17446" e_stop="17292"/>
          <exon e_start="17241" e_stop="17105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGTTCTTACTAAAGTTCTTTCCTGAAGAGATCATGTCCCATAAGTTATTTGAATTAATGTTTCTAAAGTATTAATGTGAGCTAAACTGGAATGAGTGAGCTCACATTGCGCATCATTGAATGAGTCTTTCTCGTGCTCTATTTTCTGCTTTGTGTTTATCCGTCTAATGGAAGTCTACTTATTTGTGTATGAGTGCTTTGTG--GTAACTCTTTTCAGCCCTAAAACAGTACCTAATTCCCTGGAAAGATGACCAAGAAAAGACAACATATCCCATCAAGAATTGTGTCGTCTTTCATAGTGACAACAGCCATAATGTACTCTCTTATGCATGGTTATGA</genome_strand>
        <mrna_strand>GACTTGTTCTTACTCAAGTTCTTTCCTGAAGAGATCATGCCCCATAAGTTATTTGAATTAATGTTTCTAAGGTATTAATGTGAGCTAAACTGTAATGAGTGAGTTCACACTGCACATCATTGAATGAGTCTTTCTCGTGCTCTATCTTCTTCTTT..................................................GTAGTAACTCTTTTCAACCATAAATCAGTTCGTAATTCCCTGGAAAGATGACCAAGCAAATACGACATATCCCATCAATCTTTGTGTAATCTTTCATAGTGACAACAGCCATAATGTACTCTCTTATGCATGGTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273274" ref_strand="+" ref_description="SGN-E273274 [cLEM-24-N7]">
      <seq>tttcctaacaaacgatattctccttctcttgattacttgttactaacagattcagtcagcttagctgttttgataaggcaatgcaggttgatagcaagttcaagtggattgaggaaatgatgaagtgtactcactccacataaatcaaagttgggggttggtcaaactaccagaagggaataagacaatccagaataatgtatgtacaggatgaaacagaagcataatagttcaatgaaatataaagcaaggttggtaataaaaggttttcaacaaaaggcatgtatcaatttactgagattttctcccttgtgattaaattacctactattcgagttgctttagaattgctgtagcataagatttatatttagagcatttagatgtaaggacagcctctctttatgatgatcaacatgaaagacgtgtatgcgtagcaacctgaagtgtacatacaggctgataagaaaaatatggtgcgtagactgaagaagagtctctatggtttgaaacaagcaccaagaccatacttaaagtttggcaggtttatgatgactattggcttacttggtataatgatgatcactgttcttacttcaagaaatttataaattcgtacatcactttgctcctgtatatggatgatatgttggtgacaggttaaaacatgtgtgggatcacaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="18687" stop="17400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18387" g_stop="17700" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E273274" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18387" e_stop="17700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGATAAGAAAAATATGGTGCGTAGACTGAAGAAGAGTCTCTATGGTTTGAAACAAGCACCAAGACCATACTTAAAGTTTGGCAGGTTTATGATGACTATTGGCTTACTTGGTATAATGATGATCACTGTTCTTACTTCAAGAAATTTATAAATTCGTACATCACTTTGCTCCTGTATATGGATGATATGTTGGTGACAGGTTAAAACATGTGTGGGATCACAAAACTG</genome_strand>
        <mrna_strand>TTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGATAAGAAAAATATGGTGCGTAGACTGAAGAAGAGTCTCTATGGTTTGAAACAAGCACCAAGACCATACTTAAAGTTTGGCAGGTTTATGATGACTATTGGCTTACTTGGTATAATGATGATCACTGTTCTTACTTCAAGAAATTTATAAATTCGTACATCACTTTGCTCCTGTATATGGATGATATGTTGGTGACAGGTTAAAACATGTGTGGGATCACAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550711" ref_strand="+" ref_description="SGN-E550711 [TUS-50-E17]">
      <seq>cggaagttagtgactactatggcagacaagatgagggaagaaattaagatagttcggacatgtgaagaggaggtgtgcggatgcaccaataaaaaggtgtgagaggctgactatgagaacacaccgtttctgcgaagaaggtatgtaagacagaggtttcctaacaaacgatattctccttctcttgattacttgttactaacagattcagtcagcttagctgttttgataaggcaatgcaggttgatagcaagttcaagtggattgaggaaatgatgaagtgtactcactccacataaatcaaagttgggggttggtcaaactaccagaagggaataagacaatccagaataatgtatgtacaggatgaaacagaagcataatagttcaatgaaatataaagcaaggttggtaataaaaggttttcaacaaaaggcatgtatcaatttactgagattttctcccttgtgattaaattacctactattcgagttgctttagaattgctgtagcataagatttatatttagagcatttagatgtaaggacagcctctctttatgatgatcaacatgaaagacgtgtatgcgtagcaacctgaagtgtacatacaggctgataagaaaatatggtgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="18843" stop="17606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18543" g_stop="17906" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E550711" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18543" e_stop="17906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGTTAGTGACTACTATGGCAGACAAGATGAGGGAAGAAATTAAGATAGTTCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGATAAGAAAAATATGGTGCGT</genome_strand>
        <mrna_strand>CGGAAGTTAGTGACTACTATGGCAGACAAGATGAGGGAAGAAATTAAGATAGTTCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGATAAG-AAAATATGGTGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688390" ref_strand="+" ref_description="SGN-E688390 [t3_tus_50_e17]">
      <seq>cggaagttagtgactactatggcagacaagatgagggaagaaattaagatagttcggacatgtgaagaggaggtgtgcggatgcaccaataaaaaggtgtgagaggctgactatgagaacacaccgtttctgcgaagaaggtatgtaagacagaggtttcctaacaaacgatattctccttctcttgattacttgttactaacagattcagtcagcttagctgttttgataaggcaatgcaggttgatagcaagttcaagtggattgaggaaatgatgaagtgtactcactccacataaatcaaagttgggggttggtcaaactaccagaagggaataagacaatccagaataatgtatgtacaggatgaaacagaagcataatagttcaatgaaatataaagcaaggttggtaataaaaggttttcaacaaaaggcatgtatcaatttactgagattttctcccttgtgattaaattacctactattcgagttgctttagaattgctgtagcataagatttatatttagagcatttagatgtaaggacagcctctctttatgatgatcaacatgaaagacgtgtatgcgtagcaacctgaagtgtacatacaggctgataagaaaatatggtgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="18843" stop="17606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18543" g_stop="17906" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E688390" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18543" e_stop="17906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGTTAGTGACTACTATGGCAGACAAGATGAGGGAAGAAATTAAGATAGTTCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGATAAGAAAAATATGGTGCGT</genome_strand>
        <mrna_strand>CGGAAGTTAGTGACTACTATGGCAGACAAGATGAGGGAAGAAATTAAGATAGTTCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGATAAG-AAAATATGGTGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269875" ref_strand="+" ref_description="SGN-E269875 [cLEM-17-L23]">
      <seq>tttcctaacaaacgatattctccttctcttgattacttgttactaacagattcagtcagcttagctgttttgataaggcaatgcaggttgatagcaagttcaagtggattgaggaaatgatgaagtgtactcactccacataaatcaaagttgggggttggtcaaactaccagaagggaataagacaatccagaataatgtatgtacaggatgaaacagaagcataatagttcaatgaaatataaagcaaggttggtaataaaaggttttcaacaaaaggcatgtatcaatttactgagattttctcccttgtgattaaattacctactattcgagttgctttagaattgctgtagcataagatttatatttagagcatttagatgtaaggacagcctctctttatgatgatcaacatgaaagacgtgtatgcgtagcaacctgaagtgtacatacaggctgataagaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="18687" stop="17614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18387" g_stop="17914" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E269875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18387" e_stop="17914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGATAAGAAAAATA</genome_strand>
        <mrna_strand>TTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGATAAGAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688407" ref_strand="+" ref_description="SGN-E688407 [t3_tus_50_f17]">
      <seq>tcggacatgtgaagaggaggtgtgcggatgcaccggtggagaggtgtgagaggctgactatgacaacacaccgtttctgcgaagaaggtatgtaagacagaggtttcctaacaaacgatattctccttctcttgattacttgttactaacagattcagtcagcttagctgttttgataaggcaatgcaggttgatagcaagttcaagtggattgaggaaatgatgaagtgtactcactccacataaatcaaagttgggggttggtcaaactaccagaagggaataagacaatccagaataatgtatgtacaggatgaaacagaagcataatagttcaatgaaatataaagcaaggttggtaataaaaggttttcaacaaaaggcatgtatcaatttactgagattttctcccttgtgattaaattacctactattcgagttgctttagaattgctgtagcataagatttatatttagagcatttagatgtaaggacagcctctctttatgatgatcaacatgaaagacgtgtatgcgtagcaacctgaagtgtacatacaggctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="18790" stop="17625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18490" g_stop="17925" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E688407" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18490" e_stop="17925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGA</genome_strand>
        <mrna_strand>TCGGACATGTGAAGAGGAGGTGTGCGGATGCACCGGTGGAGAGGTGTGAGAGGCTGACTATGACAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551415" ref_strand="+" ref_description="SGN-E551415 [TUS-50-F17]">
      <seq>tcggacatgtgaagaggaggtgtgcggatgcaccggtagagaggtgtgagaggctgactatgacaacacaccgtttctgcgaagaaggtatgtaagacagaggtttcctaacaaacgatattctccttctcttgattacttgttactaacagattcagtcagcttagctgttttgataaggcaatgcaggttgatagcaagttcaagtggattgaggaaatgatgaagtgtactcactccacataaatcaaagttgggggttggtcaaactaccagaagggaataagacaatccagaataatgtatgtacaggatgaaacagaagcataatagttcaatgaaatataaagcaaggttggtaataaaaggttttcaacaaaaggcatgtatcaatttactgagattttctcccttgtgattaaattacctactattcgagttgctttagaattgctgtagcataagatttatatttagagcatttagatgtaaggacagcctctctttatgatgatcaacatgaaagacgtgtatgcgtagcaacctgaagtgtacatacaggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="18790" stop="17626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18490" g_stop="17926" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E551415" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18490" e_stop="17926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTG</genome_strand>
        <mrna_strand>TCGGACATGTGAAGAGGAGGTGTGCGGATGCACCGGTAGAGAGGTGTGAGAGGCTGACTATGACAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205648" ref_strand="+" ref_description="SGN-E205648 [cLEC-21-H16]">
      <seq>ggaagttagtgactactatggcagacaagatgagggaagaaattaagatagttcggacatgtgaagaggaggtgtgcggatgcaccaataaaaaggtgtgagaggctgactatgagaacacaccgtttctgcgaagaaggtatgtaagacagaggtttcctaacaaacgatattctccttctcttgattacttgttactaacagattcagtcagcttagctgttttgataaggcaatgcaggttgatagcaagttcaagtggattgaggaaatgatgaagtgtactcactccacataaatcaaagttgggggttggtcaaactaccagaagggaataagacaatccagaataatgtatgtacaggatgaaacagaagcataatagttcaatgaaatataaagcaaggttggtaataaaaggttttcaacaaaaggcatgtatcaatttactgagattttctcccttgtgattaaattacctactattcgagttgctttagaattgctgtagcataagatttatatttagagcatttagatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="18842" stop="17700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18542" g_stop="18000" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E205648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18542" e_stop="18000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTAGTGACTACTATGGCAGACAAGATGAGGGAAGAAATTAAGATAGTTCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTA</genome_strand>
        <mrna_strand>GGAAGTTAGTGACTACTATGGCAGACAAGATGAGGGAAGAAATTAAGATAGTTCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208657" ref_strand="+" ref_description="SGN-E208657 [cLEC-39-O4]">
      <seq>ggaagttagtgactactatggcagacaagatgagggaagaaattaagatagttcggacatgtgaagaggaggtgtgcggatgcaccaataaaaaggtgtgagaggctgactatgagaacacaccgtttctgcgaagaaggtatgtaagacagaggtttcctaacaaacgatattctccttctcttgattacttgttactaacagattcagtcagcttagctgttttgataaggcaatgcaggttgatagcaagttcaagtggattgaggaaatgatgaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="18842" stop="17961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18542" g_stop="18261" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E208657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18542" e_stop="18261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTAGTGACTACTATGGCAGACAAGATGAGGGAAGAAATTAAGATAGTTCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTG</genome_strand>
        <mrna_strand>GGAAGTTAGTGACTACTATGGCAGACAAGATGAGGGAAGAAATTAAGATAGTTCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410214" ref_strand="+" ref_description="SGN-E410214 [PPI-16-I24]">
      <seq>aatactccttcgatttcgtattcgcctagccgattgaatgcacggagatcggcgatgacgaattcactggtgcgtatctggtctgttgaaggtgatttagtgaaacgagctttggcagctcttattaggccatcgtcgcatcatcagagacgtcgaggtgactttcaaccgcgtcctagccggctttccagaatgtccaaagccgataacctgtgaaatttccgtttccgtggtgtaacaggttggtgattttcatatattaactgaggccatctcttgagagttttccggcggaggcgtctgatccaggctgcggttcttactactccggtggtgaaatgaaagctatagggcaattttgatgcagtatggaagtagtagaattctcccttgtacatatggtgttgttgcagtaactgattgcaattgaaggacaatttgaacttttaaaatctaattaaacagattacaatttgaagcaaaaaatcaggaattcggaacttcgattacatatttattaacaaatcatgagaaatttgtgtgtggactttttttgatgttcgatgaagtggcgtgacttgtttctctttgtgttcgatcacagcctatgtgatctccgtcgtgtctggcgttcaccgttacgttatgcaatggcgtttcccgttcgttcgccgactttgcgttcggcatggtttggcatctttgcgtcatcgctcgatgttcggagtattcagtgcccatttcaattcttggaccaacggatagtggatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21272" stop="19961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20972" g_stop="20263" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20262" i_stop="20145" i_length="118">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20144" g_stop="20136" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="728" r_length="9" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E410214" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20972" e_stop="20263"/>
          <exon e_start="20144" e_stop="20136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAA------TTTCCGT-G-GTAACAGGTTGGTGATTTTCATATATTAACTGAGGCTCATCTCTTGAGAGTTTTCCGGCGGCGGCGTCTGATCCTGGCTGCGGTTCTTACTACTCC---GGTGAAATGAAAGCTGTAGGGCAATTTTGATGCAGTATGGAAGTAGTAGAATTCTCCCTTGTACATATGGTTTTGTTGCAGTAACTGATTGCAATTGAAAGGACAATTTGGACTTTTAAAATCTAATTAAACCGATTAAAATTTAAAGCAAAAAAATCAGGAATTCGTAACTTCGATTAAAGATTAATTAACAAATCATGAGTAATTCGTTTGTGGA-TTTTTCTGATGTTCGATGAAGTGGTGTGACTTGTTTCTCTTTGTGTTCGTTCACAGCCTTTGTGTTTTCCGTCGTGTTTGGCGTTCATCGTTCCGTTTTGCGATGGCATTTCCCGTTCGTTCGCCGTATATGCGTTCGTCCTGTTTTGGCATCTTTGCGTCATCGTTCGAGGTATTTTATTTATATATTTTCCTTTTCTATATTTTTTTATATAGTTTTATTTACGTATTTAGTATTTATTTGTAGTTGAATTTGGTAATGTTATTCTTTTTGGTGTCCTGGTTTACAGGTTCGGCGT</genome_strand>
        <mrna_strand>AATACTCCTTCGATTTCGTATTCGCCTAGCCGATTGAATGCACGGAGATCGGCGATGACGAATTCACTGGTGCGTATCTGGTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCAGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCCGATAACCTGTGAAATTTCCGTTTCCGTGGTGTAACAGGTTGGTGATTTTCATATATTAACTGAGGC-CATCTCTTGAGAGTTTTCCGGCGGAGGCGTCTGATCCAGGCTGCGGTTCTTACTACTCCGGTGGTGAAATGAAAGCTATAGGGCAATTTTGATGCAGTATGGAAGTAGTAGAATTCTCCCTTGTACATATGGTGTTGTTGCAGTAACTGATTGCAATTG-AAGGACAATTTGAACTTTTAAAATCTAATTAAACAGATTACAATTTGAAGC-AAAAAATCAGGAATTCGGAACTTCGATTACATATTTATTAACAAATCATGAGAAATTTGTGTGTGGACTTTTTTTGATGTTCGATGAAGTGGCGTGACTTGTTTCTCTTTGTGTTCGATCACAGCCTATGTGATCTCCGTCGTGTCTGGCGTTCACCGTTACGTTATGCAATGGCGTTTCCCGTTCGTTCGCCGACTTTGCGTTCGGCATGGTTTGGCATCTTTGCGTCATCGCTCGAT......................................................................................................................GTTCGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421243" ref_strand="+" ref_description="SGN-E421243 [STM-32-D19]">
      <seq>caaatttctcatgatttgttaataaatatttaatcgaagttccgaattcctgattttttgcttcaaattttaatctggttaattagattttaaaagttcaaattgtccttcaattgcaatcagttactgcaacaacaccatatgtacaagggagaattctactacttccatactgcatcaaaattgccctatagctttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="20142" stop="20946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20442" g_stop="20646" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E421243" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20442" e_stop="20646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATTACTCATGATTTGTTAATTAATCTTTAATCGAAGTTACGAATTCCTGATTTTTTTGCTTTAAATTTTAATCGGTTTAATTAGATTTTAAAAGTCCAAATTGTCCTTTCAATTGCAATCAGTTACTGCAACAAAACCATATGTACAAGGGAGAATTCTACTACTTCCATACTGCATCAAAATTGCCCTACAGCTTTCATTT</genome_strand>
        <mrna_strand>CAAATTTCTCATGATTTGTTAATAAATATTTAATCGAAGTTCCGAATTCCTGA-TTTTTTGCTTCAAATTTTAATCTGGTTAATTAGATTTTAAAAGTTCAAATTGTCC-TTCAATTGCAATCAGTTACTGCAACAACACCATATGTACAAGGGAGAATTCTACTACTTCCATACTGCATCAAAATTGCCCTATAGCTTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715039" ref_strand="+" ref_description="SGN-E715039 [FB13AF05]">
      <seq>ccataagaatgtgaagaatactccttcgatttcgtattcccctagccgattgaatgcacggagatcggcgatgacaaattcactggtgcgtatctgttctgttgaaggtgatttagtgaaacgagctttggctgctcttattaggccatcgtcgcatcatcagagacgtcgaggtgactttcaaccgcgtcctagccggctttccagaatgtccaaagctgataacctgtgaaatttccgtggtaacaggttggtgattttcatatattaactgaggctcatctcttgagagttttccggcggcggcgtctgatcctggctgcggttcttactactccggtgaaatgaaagctgtagggcaattttgatgcagtatggaagtagtagaattctcccttgtacatatggttttgttgcagtaactgattgcaattgaaaggacaatttggacttttaaaatctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21287" stop="20220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20988" g_stop="20508" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E715039" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20988" e_stop="20508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTCCGTGGTAACAGGTTGGTGATTTTCATATATTAACTGAGGCTCATCTCTTGAGAGTTTTCCGGCGGCGGCGTCTGATCCTGGCTGCGGTTCTTACTACTCCGGTGAAATGAAAGCTGTAGGGCAATTTTGATGCAGTATGGAAGTAGTAGAATTCTCCCTTGTACATATGGTTTTGTTGCAGTAACTGATTGCAATTGAAAGGACAATTTGGACTTTTAAAATCTAATTAAACCGATTAAAATT</genome_strand>
        <mrna_strand>CCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTCCGTGGTAACAGGTTGGTGATTTTCATATATTAACTGAGGCTCATCTCTTGAGAGTTTTCCGGCGGCGGCGTCTGATCCTGGCTGCGGTTCTTACTACTCCGGTGAAATGAAAGCTGTAGGGCAATTTTGATGCAGTATGGAAGTAGTAGAATTCTCCCTTGTACATATGGTTTTGTTGCAGTAACTGATTGCAATTGAAAGGACAATTTGGACTTTTAAAATCTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559089" ref_strand="+" ref_description="SGN-E559089 [18531]">
      <seq>cacggagatcggcaatgacgaattcactggtgcgtatctggtctgttgaaggtgatttagtgaaacgagctttggcagctcttattaggccatcgtcgcatcatcagagacgtcgaggtgactttcaaccgcgtcctagccggctttccagaatgtccaaagctgataacctgtgaaatttccgtttccgtggtgtaacaggttggtgattttcatatattaactgaggctcatctcttgagagttttccggcggtggcgtctgatccaggctgcggttcttactactccggtggtgaaatgaaagctatagagcaattttgatgcagtatggaagtagtagaattctcccttgtacatatggtgttgttgcagtaactgattgcaattgaaggacaatttgaacttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21232" stop="20230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20932" g_stop="20524" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E559089" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20932" e_stop="20524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAA------TTTCCGT-G-GTAACAGGTTGGTGATTTTCATATATTAACTGAGGCTCATCTCTTGAGAGTTTTCCGGCGGCGGCGTCTGATCCTGGCTGCGGTTCTTACTACTCC---GGTGAAATGAAAGCTGTAGGGCAATTTTGATGCAGTATGGAAGTAGTAGAATTCTCCCTTGTACATATGGTTTTGTTGCAGTAACTGATTGCAATTGAAAGGACAATTTGGACTTTTAAAATCTAAT</genome_strand>
        <mrna_strand>CACGGAGATCGGCAATGACGAATTCACTGGTGCGTATCTGGTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCAGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTCCGTTTCCGTGGTGTAACAGGTTGGTGATTTTCATATATTAACTGAGGCTCATCTCTTGAGAGTTTTCCGGCGGTGGCGTCTGATCCAGGCTGCGGTTCTTACTACTCCGGTGGTGAAATGAAAGCTATAGAGCAATTTTGATGCAGTATGGAAGTAGTAGAATTCTCCCTTGTACATATGGTGTTGTTGCAGTAACTGATTGCAATTG-AAGGACAATTTGAACTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589672" ref_strand="+" ref_description="SGN-E589672 [43252]">
      <seq>taaactagtggatcccccggggctttgaaattgtccttcaattgcaatcagttactgcaacaacaccatatgtacaagggagaattctactacttccatactgcatcaaaattgccctatagctttcatttcaccaccggagtagtaagaaccgcagcctggatcagacgccaccgccggaaaactctcaagagatgagcctcagttaatatatgaaaatcaccaacctgttacaccacggaaacggaaatttcacaggttatcagctttggacattctggaaagccggctaggacgcggttgaaagtcacctcgacgtctctgatgatgcgacgatggcctaataagagctgccaaagctcgtttcactaaatcaccttcaacagaccagatacgcaccagtgaattcgtcattgccgatctccgtgcattcaatcggctaggcgaatacgaaatcgaaggagtattcttcacattcttatgcatactacacctgaacgaaccaggatgcgtcgtaggtgagcataagcacgttctcttcggaatctgctttcgaaccacctgatcacgttgagacaccgccatggaacgccgaggagaaatggatctgtcaatggagaacctaacgctaggcgtagaattcaccggcgccagagcgtgaagattcacgcgcgtcggtgaagccgatcgattgaaacacccggtcgacggagaggaataaaaactagagttgctgtacgaagcgaacggacatcgcatcagtttgcggtggtggtggtgtttacaggaaacgggcggtaggtgagattgacctctcaaacgcgatttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="20242" stop="21632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20539" g_stop="21332" g_length="794"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="831" r_length="807" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E589672" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20539" e_stop="21332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAATTGTCCTTTCAATTGCAATCAGTTACTGCAACAAAACCATATGTACAAGGGAGAATTCTACTACTTCCATACTGCATCAAAATTGCCCTACAGCTTTCATTT---CACCGGAGTAGTAAGAACCGCAGCCAGGATCAGACGCCGCCGCCGGAAAACTCTCAAGAGATGAGCCTCAGTTAATATATGAAAATCACCAACCTGTT--A-C-C----ACGGAAATTTCACAGGTTATCAGCTTTGGACATTCTGGAAAGCCGGCTAGGACGCGGTTGAAAGTCACCTCGACGTCTCTGATGATGCGACGATGGCCTAATAAGAGCAGCCAAAGCTCGTTTCACTAAATCACCTTCAACAGAACAGATACGCACCAGTGAATTTGTCATCGCCGATCTCCGTGCATTCAATCGGCTAGGGGAATACGAAATCGAAGGAGTATTCTTCACATTCTTATGCATACTACACCTGAACGAACCAGGATGCGTCGTAGGTGAGCATAAGCACGTCCTCTTCGGGATCTGCTTCCGAACCACCTGATCACGTTGAGACACCGCCATGGAACGCCGAGGAGAAATGGATCTGTCAATGGAGAACCTAACGCTAGGCGAAGAATTCACCGGCGCCAGAGCGTGAAGATTCACGCGCGTCGGAGAAGCCGATCGGTTGAAACAGCCGGTCGACGGAGAGGAATAAAAGCTAGAGTTGCTGTACGAAGCGAAC-GACATCGCATCAG-TTGCTGTGGTGGTGGTG-TTACA-GAACCTGCCGGTAGGTGAGATTGACCTCTCAAACGCCGATTTAAG</genome_strand>
        <mrna_strand>TTGAAATTGTCCTT-CAATTGCAATCAGTTACTGCAACAACACCATATGTACAAGGGAGAATTCTACTACTTCCATACTGCATCAAAATTGCCCTATAGCTTTCATTTCACCACCGGAGTAGTAAGAACCGCAGCCTGGATCAGACGCCACCGCCGGAAAACTCTCAAGAGATGAGCCTCAGTTAATATATGAAAATCACCAACCTGTTACACCACGGAAACGGAAATTTCACAGGTTATCAGCTTTGGACATTCTGGAAAGCCGGCTAGGACGCGGTTGAAAGTCACCTCGACGTCTCTGATGATGCGACGATGGCCTAATAAGAGCTGCCAAAGCTCGTTTCACTAAATCACCTTCAACAGACCAGATACGCACCAGTGAATTCGTCATTGCCGATCTCCGTGCATTCAATCGGCTAGGCGAATACGAAATCGAAGGAGTATTCTTCACATTCTTATGCATACTACACCTGAACGAACCAGGATGCGTCGTAGGTGAGCATAAGCACGTTCTCTTCGGAATCTGCTTTCGAACCACCTGATCACGTTGAGACACCGCCATGGAACGCCGAGGAGAAATGGATCTGTCAATGGAGAACCTAACGCTAGGCGTAGAATTCACCGGCGCCAGAGCGTGAAGATTCACGCGCGTCGGTGAAGCCGATCGATTGAAACACCCGGTCGACGGAGAGGAATAAAAACTAGAGTTGCTGTACGAAGCGAACGGACATCGCATCAGTTTGCGGTGGTGGTGGTGTTTACAGGAAACGGGCGGTAGGTGAGATTGACCTCTCAAACG-CGATTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734256" ref_strand="+" ref_description="SGN-E734256 [LB12AG07]">
      <seq>gcactttttaagagatctatacaaacagaaattgtttatatagatcttcactgaaaatggcgaattcctctagaaggccgagtgggccagtgttgcttaaatcggcgtttgagaggtcaatctcacctaccggcaggttctgtaacaccaccaccacagcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgtcgaccggctgtttcaaccgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattcttcgcctagcgttaggttctccattgacagatccatttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcggaagcagatcccgaagaggacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatactccttcgatttcgtattcccctagccgattgaatgcacggagatcggcgatgacaaattcactggtgcgtatctgttctgttgaaggtgatttagtgaaacgagctttggctgctcttattaggccatcgtcgcatcatcagagacgtcgaggtgactttcaaccgcgtcctagccggctttccagaatgtccaaagctgataacctgtgaaatttccgtggtaacaggttggtgattttcatatattaactgaggctcatctcttgagagttttccggcggcggcgtctgatcctggctgcggttcttactactccggtgaaatgaaagctgtagggcaattttgatgcagtatggaagtagtagaattctcccttgtacatatggttttgttgcagtaactgattgcaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21727" stop="20253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21427" g_stop="20553" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E734256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21427" e_stop="20553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTCCGTGGTAACAGGTTGGTGATTTTCATATATTAACTGAGGCTCATCTCTTGAGAGTTTTCCGGCGGCGGCGTCTGATCCTGGCTGCGGTTCTTACTACTCCGGTGAAATGAAAGCTGTAGGGCAATTTTGATGCAGTATGGAAGTAGTAGAATTCTCCCTTGTACATATGGTTTTGTTGCAGTAACTGATTGCAATTGA</genome_strand>
        <mrna_strand>GCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTCCGTGGTAACAGGTTGGTGATTTTCATATATTAACTGAGGCTCATCTCTTGAGAGTTTTCCGGCGGCGGCGTCTGATCCTGGCTGCGGTTCTTACTACTCCGGTGAAATGAAAGCTGTAGGGCAATTTTGATGCAGTATGGAAGTAGTAGAATTCTCCCTTGTACATATGGTTTTGTTGCAGTAACTGATTGCAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731194" ref_strand="+" ref_description="SGN-E731194 [LA26BF10]">
      <seq>atcttctcccacctataaatttacccttcgacactcgctaggtttgccaaactgaaaagccttagggcactttttaagagatctatacaaacagaaattgtttatatagatcttcactgaaaatggcgaattcctctagaaggccgagtgggccagtgttgcttaaatcggcgtttgagaggtcaatctcacctaccggcaggttctgtaacaccaccaccacagcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgtcgaccggctgtttcaaccgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattcttcgcctagcgttaggttctccattgacagatccatttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcggaagcagatcccgaagaggacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatactccttcgatttcgtattcccctagccgattgaatgcacggagatcggcgatgacaaattcactggtgcgtatctgttctgttgaaggtgatttagtgaaacgagctttggctgctcttattaggccatcgtcgcatcatcagagacgtcgaggtgactttcaaccgcgtcctagccggctttccagaatgtccaaagctgataacctgtgaaatttccgtggtaacagggtggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21793" stop="20432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21493" g_stop="20732" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E731194" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21493" e_stop="20732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTCCCACCTATAAATTTACCCTTCGACACTCGCTAGGTTTGCCAAACTGAAAAGCCTTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTCCGTGGTAACAGGTTGGTGA</genome_strand>
        <mrna_strand>ATCTTCTCCCACCTATAAATTTACCCTTCGACACTCGCTAGGTTTGCCAAACTGAAAAGCCTTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTCCGTGGTAACAGGGTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407498" ref_strand="+" ref_description="SGN-E407498 [PPI-7-D11]">
      <seq>actttttaagagatctatacaaacagaaattgtttgtatagatcttcagcgaaaatggcgaattcctctagaaggcctagtgggtcagtgttgcttaaatcggcgtttgagtggtcaatctcacctaccggccggttctgtaacaccaccaccaccgcaactgatgcgatgtcgttcgcttcgtacagcaactctagtttttattcctctccgtcgaccgggtgtttcaatcgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattctacgcctagcgttaggttctccatcgacagatccatttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcgaaagcagattccgaagagaacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatactccttcgatttcgtattcgcctagccgattgaatgcacggagatcggcgatgacgaattcactggtgcgtatctggtctgttgaaggtgatttagtgaaacgagctttggcagctcttattaggccatcgtcgcatcatcagagacgtcgaggtgactttcaaccgcgtcctagccggctttccagaatgtccaaagccgataacctgtgaaatttccgtttccgtggtgtaacagggttggtgattttcatatattaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21725" stop="20416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21425" g_stop="20747" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E407498" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21425" e_stop="20747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTCCGTG</genome_strand>
        <mrna_strand>ACTTTTTAAGAGATCTATACAAACAGAAATTGTTTGTATAGATCTTCAGCGAAAATGGCGAATTCCTCTAGAAGGCCTAGTGGGTCAGTGTTGCTTAAATCGGCGTTTGAGTGGTCAATCTCACCTACCGGCCGGTTCTGTAACACCACCACCACCGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGTTTTTATTCCTCTCCGTCGACCGGGTGTTTCAATCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTACGCCTAGCGTTAGGTTCTCCATCGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGAAAGCAGATTCCGAAGAGAACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCGCCTAGCCGATTGAATGCACGGAGATCGGCGATGACGAATTCACTGGTGCGTATCTGGTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCAGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCCGATAACCTGTGAAATTTCCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395343" ref_strand="+" ref_description="SGN-E395343 [TUS-16-D1]">
      <seq>ccttagggcactttttaagagatctatacaaacagaaattgtttatatagatcttcactgaaaatggcgaattcctctagaaggccgagtgggccagtgttgcttaaatcggcgtttgagaggtcaatctcacctaccggcaggttctgtaacaccaccaccacagcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgtcgaccggctgtttcaaccgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattcttcgcctagcgttaggttctccattgacagatccatttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcggaagcagatcccgaagaggacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatactccttcgatttcgtattcccctagccgattgaatgcacggagatcggcgatgacaaattcactggtgcgtatctgttctgttgaaggtgatttagtgaaacgagctttggctgctcttattaggccatcgtcgcatcatcagagacgtcgaggtgactttncaccgcgtcctagccggctttccagaatgtccaaagctgataacctgtgaaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21734" stop="20451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21434" g_stop="20751" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E395343" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21434" e_stop="20751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTC</genome_strand>
        <mrna_strand>CCTTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTNCACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463574" ref_strand="+" ref_description="SGN-E463574 [cPRO-15-I3]">
      <seq>aagagatctatacaaacagaaattgtttgtatagatcttcagcgaaaatggcgaattcctctagaaggcctagtgggtcagtgttgcttaaatcggcgtttgagtggtcaatctcacctaccggccggttctgtaacaccaccaccaccgcaactgatgcgatgtcgttcgcttcgtacagcaactctagtttttattcctctccgtcgaccgggtgtttcaatcgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattctacgcctagcgttaggttctccatcgacagatccatttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcgaaagcagattccgaagagaacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatactccttcgatttcgtattcgcctaaccgattgaatgcacggagatcggcgatgacgaattcactggtgcgtatctggtctgttgaaagtgatttagtgagacgagctttggcagctcttattatgccatcgtcgcatcatcagagacgtcgaggtgactttcaaccgcgtcctaaccggctttccagaatgtccaaagccgataacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21718" stop="20461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21418" g_stop="20761" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E463574" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21418" e_stop="20761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCT</genome_strand>
        <mrna_strand>AAGAGATCTATACAAACAGAAATTGTTTGTATAGATCTTCAGCGAAAATGGCGAATTCCTCTAGAAGGCCTAGTGGGTCAGTGTTGCTTAAATCGGCGTTTGAGTGGTCAATCTCACCTACCGGCCGGTTCTGTAACACCACCACCACCGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGTTTTTATTCCTCTCCGTCGACCGGGTGTTTCAATCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTACGCCTAGCGTTAGGTTCTCCATCGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGAAAGCAGATTCCGAAGAGAACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCGCCTAACCGATTGAATGCACGGAGATCGGCGATGACGAATTCACTGGTGCGTATCTGGTCTGTTGAAAGTGATTTAGTGAGACGAGCTTTGGCAGCTCTTATTATGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAACCGGCTTTCCAGAATGTCCAAAGCCGATAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466729" ref_strand="+" ref_description="SGN-E466729 [cPRO-25-L20]">
      <seq>ctctagaaggcctagtgggtcagtgttgcttaaatcggcgtttgagtggtcaatctcacctaccggccggttctgtaacaccaccaccaccgcaactgatgcgatgtcgttcgcttcgtacagcaactctagtttttattcctctccgtcgaccgggtgtttcaatcgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattctacgcctagcgttaggttctccatcgacagatccatttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcgaaagcagattccgaagagaacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatactccttcgatttcgtattcgcctagccgattgaatgcacggagatcggcgatgacgaattcactggtgcgtatctggtctgttgaaggtgatttagtgaaacgagctttggcagctcttattaggccatcgtcgcatcatcagagacgtcgaggtgactttncacccgcgtctagccggcttttcagaatgtccaaagccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21660" stop="20468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21360" g_stop="20768" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E466729" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21360" e_stop="20768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTT-CAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTG</genome_strand>
        <mrna_strand>CTCTAGAAGGCCTAGTGGGTCAGTGTTGCTTAAATCGGCGTTTGAGTGGTCAATCTCACCTACCGGCCGGTTCTGTAACACCACCACCACCGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGTTTTTATTCCTCTCCGTCGACCGGGTGTTTCAATCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTACGCCTAGCGTTAGGTTCTCCATCGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGAAAGCAGATTCCGAAGAGAACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCGCCTAGCCGATTGAATGCACGGAGATCGGCGATGACGAATTCACTGGTGCGTATCTGGTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCAGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTNCACCCGCGT-CTAGCCGGCTTTTCAGAATGTCCAAAGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275292" ref_strand="+" ref_description="SGN-E275292 [cLEN-9-J21]">
      <seq>accaccacagcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgtcgaccggctgtttcaaccgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattcttcgcctagcgttaggttctccattgacagatccatttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcggaagcagatcccgaagaggacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatactccttcgatttcgtattcccctagccgattgaatgcacggagatcggcgatgacaaattcactggtgcgtatctgttctgttgaaggtgatttagtgaaacgagctttggctgctcttattaggccatcgtcgcatcatcagagacgtcgaggtgactttcaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21578" stop="20502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21278" g_stop="20802" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E275292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21278" e_stop="20802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCG</genome_strand>
        <mrna_strand>ACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275054" ref_strand="+" ref_description="SGN-E275054 [cLEN-9-C3]">
      <seq>accaccacagcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgtcgaccggctgtttcaaccgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattcttcgcctagcgttaggttctccattgacagatccatttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcggaagcagatcccgaagaggacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatactccttcgatttcgtattcccctagccgattgaatgcacggagatcggcgatgacaaattcactggtgcgtatctgttctgttgaaggtgatttagtgaaacgagctttggctgctcttattaggccatcgtcgcatcatcagagacgtcgaggtgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21578" stop="20509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21278" g_stop="20809" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E275054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21278" e_stop="20809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTT</genome_strand>
        <mrna_strand>ACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366929" ref_strand="+" ref_description="SGN-E366929 [cLPT-6-M15]">
      <seq>tttttaagagatctatacaaacagaaattgtttatatagatcttcactgaaaatggcgaattcctctagaaggcctagtgggccagtgttgctgaaatcggcgtttgagaggtcaatctcacctaccggccggttctgtaacaccaccaccgcagcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgtcgaccggctgtttcaaccgatctgcttctccgacgcgcgtgaatcttcacgctctggcgccggcgaattctacgcctagtgttaggttctccattgacagatccagttctactcggcgttccatggcggtgtctcaacgtgatcaggtggctcggaagcagatcccgaagaggacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatactccttcgatttcgaattcgcccagccgattgaatgcacggagatcagcgatgacgaattcactggggcgtatctgttctgttgaaggtgatttantgaaacgagctttggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21723" stop="20557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21423" g_stop="20856" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E366929" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21423" e_stop="20856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCT</genome_strand>
        <mrna_strand>TTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCTAGTGGGCCAGTGTTGCTGAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCCGGTTCTGTAACACCACCACCGCAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCTGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGCGAATTCTACGCCTAGTGTTAGGTTCTCCATTGACAGATCCAGTTCTACTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGCTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGAATTCGCCCAGCCGATTGAATGCACGGAGATCAGCGATGACGAATTCACTGGGGCGTATCTGTTCTGTTGAAGGTGATTTANTGAAACGAGCTTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282249" ref_strand="+" ref_description="SGN-E282249 [cLES-4-G4]">
      <seq>actttttaagagatctatacaaacagaaattgtttatatagatcttcactgaaaatggcgaattcctctagaaggccgagtgggccagtgttgcttaaatcggcgtttgagaggtcaatctcacctaccggcaggttctgtaacaccaccaccacagcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgtcgaccggctgtttcaaccgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattcttcgcctagcgttaggttctccattgacagatccatttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcggaagcagatcccgaagaggacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatactccttcgatttcgtattcccctagccgattgaatgcacggagatcggcgatgacaaattcactggtgcgtatctgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21725" stop="20589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21425" g_stop="20889" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E282249" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21425" e_stop="20889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCT</genome_strand>
        <mrna_strand>ACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362306" ref_strand="+" ref_description="SGN-E362306 [cLPP-10-D14]">
      <seq>agggcactttttaagagatctatacaaacagaaattgtttatatagatcttcactgaaaatggcgaattcctctagaaggcctagtgggccagtgttgctgaaatcggcgtttgagaggtcaatctcacctaccggccggttctgtaacaccaccaccgcagcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgtcgaccggctgtttcaaccgatctgcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattctacgcctagtgttaggttctccattgacagatccagttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcggaagcagatcccgaagaggacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatactccttcgatttcgtattcgcccagccgattgaatgcacggagatcagcgatgacgaattcactggtgcgtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21730" stop="20594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21430" g_stop="20894" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E362306" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21430" e_stop="20894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCT</genome_strand>
        <mrna_strand>AGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCTAGTGGGCCAGTGTTGCTGAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCCGGTTCTGTAACACCACCACCGCAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCTGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTACGCCTAGTGTTAGGTTCTCCATTGACAGATCCAGTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCGCCCAGCCGATTGAATGCACGGAGATCAGCGATGACGAATTCACTGGTGCGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421242" ref_strand="+" ref_description="SGN-E421242 [STM-32-D19]">
      <seq>actttttaagagatctatacaaacagaaattgtttgtatagatcttcagcgaaaatggcgaattcctctagaaggcctagtgggtcagtgttgcttaaatcggcgtttgagtggtcaatctcacctaccggccggttctgtaacaccaccaccaccgcaactgatgcgatgtcgttcgcttcgtacagcaactctagtttttattcctctccgtcgaccgggtgtttcaatcgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattctacgcctagcgttaggttctccatcgacagatccatttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcgaaagcagattccgaagagaacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatactccttcgatttcgtattcgcctagccgattgaatgcacggagatcggcgatgacgaattcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21725" stop="20605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21425" g_stop="20905" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E421242" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21425" e_stop="20905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACT</genome_strand>
        <mrna_strand>ACTTTTTAAGAGATCTATACAAACAGAAATTGTTTGTATAGATCTTCAGCGAAAATGGCGAATTCCTCTAGAAGGCCTAGTGGGTCAGTGTTGCTTAAATCGGCGTTTGAGTGGTCAATCTCACCTACCGGCCGGTTCTGTAACACCACCACCACCGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGTTTTTATTCCTCTCCGTCGACCGGGTGTTTCAATCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTACGCCTAGCGTTAGGTTCTCCATCGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGAAAGCAGATTCCGAAGAGAACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCGCCTAGCCGATTGAATGCACGGAGATCGGCGATGACGAATTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205024" ref_strand="+" ref_description="SGN-E205024 [cLEC-16-J3]">
      <seq>cttagggctcttttttagagatctatacaaacagaaattgtttatgtagatcttcactgaaaatggcgaattcctctagaaggccgagtgggccagtgttgcttaaatcggcgtttgagaggtcaatctcacctaccggcaggttctgtaacaccaccaccacagcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgtcgaccggctgtttcaaccgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattcttcgcctagcgttaggttctccattgacagatccatttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcggaagcagatcccgaagaggacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatactccttcgatttcctattcccctagccgattgaatgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21733" stop="20630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21433" g_stop="20930" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E205024" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21433" e_stop="20930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCAC</genome_strand>
        <mrna_strand>CTTAGGGCTCTTTTTTAGAGATCTATACAAACAGAAATTGTTTATGTAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCCTATTCCCCTAGCCGATTGAATGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361519" ref_strand="+" ref_description="SGN-E361519 [cLPP-6-I2]">
      <seq>actttttaagagatctatacaaacagaaattgtttatatagatcttcactgaaaatggcgaattcctctagaaggcctagtgggccagtgttgctgaaatcggcgtttgagaggtcaatctcacctaccggccggttctgtaacaccaccaccgcagcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgtcgaccggctgtttcaaccgatctgcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattctacgcctagtgttaggttctccattgacagatccagttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcggaagcagatcccgaagaggacgtgcttatgctcacctacgacgcatcctggttcgttcaggtgtagtatgcataagaatgtgaagaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21725" stop="20668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21425" g_stop="20968" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E361519" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21425" e_stop="20968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATAC</genome_strand>
        <mrna_strand>ACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCTAGTGGGCCAGTGTTGCTGAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCCGGTTCTGTAACACCACCACCGCAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCTGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTACGCCTAGTGTTAGGTTCTCCATTGACAGATCCAGTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571692" ref_strand="+" ref_description="SGN-E571692 [15748]">
      <seq>ccttagggcactttttaagagatctatacaaacagaaattgtttatatagatcttcaggcgaaaatggcgaattcctctagaaggcctagtgggtcggtattgcttaaatcggcgtttgagaggtcaatctcacctaccggccggttctgtaacaccaccaccaccgcaactgatgcgatgtcgttcgcttcgtacagcaactctagtttttattcctctccgtcgaccgggtgtttccaatcgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattctacgcctagcgttaggttctccattgacagatccatttctcctcggcgttccatggtggtgtctcaacgtgatcaggtggttcggaaagcagattccgaagagaacgtgcttatgctcacctacggacgcatcctggttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21734" stop="20702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21434" g_stop="21002" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E571692" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21434" e_stop="21002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCA-CTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTT-CAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGG-AAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTAC-GACGCATCCTGGTTCGT</genome_strand>
        <mrna_strand>CCTTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCAGGCGAAAATGGCGAATTCCTCTAGAAGGCCTAGTGGGTCGGTATTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCCGGTTCTGTAACACCACCACCACCGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGTTTTTATTCCTCTCCGTCGACCGGGTGTTTCCAATCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTACGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGTGGTGTCTCAACGTGATCAGGTGGTTCGGAAAGCAGATTCCGAAGAGAACGTGCTTATGCTCACCTACGGACGCATCCTGGTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393970" ref_strand="+" ref_description="SGN-E393970 [TUS-14-C1]">
      <seq>ccttatggcactttttaagagatctatatcaacagaaattgtttatatagatcttcactgaaaatggcgaattcctctagaaggccgagtgggccagtgttgcttaaatcggcgtttgagaggtcaatctcacctaccggcaggttctgtaacaccaccaccacatcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgccgaccggctgtttcaaccgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattcttcgcctagcgttaggttctccattgacagatccatttctcctcggcattccatggcggtgtctcaacgtgatcaggtggttcggaagcatatcccgaagaggacgtgcttatgctcacctacgacgcatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21734" stop="20709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21434" g_stop="21009" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E393970" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21434" e_stop="21009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCT</genome_strand>
        <mrna_strand>CCTTATGGCACTTTTTAAGAGATCTATATCAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACATCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGCCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCATTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCATATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360946" ref_strand="+" ref_description="SGN-E360946 [cLPP-13-K16]">
      <seq>ttagggcactttttaagagatctatacaaacagaaattgtttatatagatcttcactgaaaatggcgaattcctctagaaggcctagtgggccagtgttgctgaaatcggcgtttgagaggtcaatctcacctaccggccggttctgtaacaccaccaccgcagcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgtcgaccggctgtttcaaccgatctgcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattctacgcctagtgttaggttctccattgacagatccagttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcggaagcagatcccgaagaggacgtgcttatgctcacctacgacgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21732" stop="20713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21432" g_stop="21013" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E360946" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21432" e_stop="21013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCA</genome_strand>
        <mrna_strand>TTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCTAGTGGGCCAGTGTTGCTGAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCCGGTTCTGTAACACCACCACCGCAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCTGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTACGCCTAGTGTTAGGTTCTCCATTGACAGATCCAGTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320691" ref_strand="+" ref_description="SGN-E320691 [cTOB-27-O12]">
      <seq>tttttaagagatctatacaaacagaaattgtttatatagatcttcactgaaaatggcgaattcctctagaaggccgagtgggccagtgttgcttaaatcggcgtttgagaggtcaatctcacctaccggcaggttctgtaacaccaccaccacagcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgtcgaccggctgtttcaaccgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattcttcgcctagcgttaggttctccattgacagatccatttctcctcggcgttccatggcggtgtctcaacgtgatcaggtggttcggaagcagatcccgaagaggacgtgcttatgctcaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21723" stop="20720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21423" g_stop="21020" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E320691" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21423" e_stop="21020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTA</genome_strand>
        <mrna_strand>TTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210225" ref_strand="+" ref_description="SGN-E210225 [cLEC-40-P17]">
      <seq>ctttttaagagatctatacagacagaaattggttatatagatcttcactgaaaatggcgaatttctctataaagccgagtgggccaatgctgcttaaatcggcgtttgagaggtcaatctcacctaccggcaggttctgtgacaccaccaccacagcaactgatgcgatgtcgttcgcttcgtacagcaactctagcttttattcctctccgtcgaccggctgtttcaaccgatcggcttctccgacgcgcgtgaatcttcacgctctggcgccggtgaattcttcgcctagcgttaggttctccattgacagatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="21724" stop="20805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21424" g_stop="21105" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E210225" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21424" e_stop="21105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATT</genome_strand>
        <mrna_strand>CTTTTTAAGAGATCTATACAGACAGAAATTGGTTATATAGATCTTCACTGAAAATGGCGAATTTCTCTATAAAGCCGAGTGGGCCAATGCTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTGACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374771" ref_strand="+" ref_description="SGN-E374771 [TUS-14-D22](-)">
      <seq>taaaggttcagtaaaagctcatgacacgacaccagtagaagtgctggttcgcaataataccaaggaaatgattagagtcagtcttagcatcacatgcagagatatagctggggagaactgtgtcgagggtgataaagcgacagtgctatgggcaggtgttctgaatggtatcaccatggaggtacctccattgaaggaatatagacattcgttctccttgtatttcctggttccaggtgagtacacacttttagctgctgctgtgattgatgatgctaatgaaatgctccgagccagagcaagagctaattcatgtgatgagtccatattttgtcgtgggccaccgttccatatccgagtgaatgggactatgtgatatccttattgaagtgtccatagtttactaaaccaggtgaaactttccagcctcaactatttgtagaacttgttatttgcacttcgtatttcttgtaattcctccttatatagaggtccattttgtttaggagaaaactgtatcactcagtttccaattgatatacaataggattctacagtgatttgtaaagctatattattcaatgaagagctggacatttattcctgcaatttatagctttatgattttgttgcatgggcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="42136" stop="40645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41836" g_stop="41682" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41681" i_stop="41430" i_length="252">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41429" g_stop="40950" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="635" r_length="480" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="651"/>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E374771" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41836" e_stop="41682"/>
          <exon e_start="41429" e_stop="40950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAGGTGCTATTCTAAAACATTACTAGTTTCCATCTCCATGTTCTTTTTAAAGTTAAAATACCACTGTAATTTTGTATCTGCATGTGTATCATTTTAACATTTGCTTTTAGAACAGTATTTTTTGCTTATGTACCGAACACGGAAAAATAAGCCAGAAACACACCCTAAGAGAGCAGCTATACTTATAATGTGTAATTGAAGACCAAACTTACTCTTGATCTGATATGTGTATTGACCTGTCTTGATCTTTTTTAGGTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGTAATTCCTCCTTATATAGAGGTCCATTTTGTTTAGGAGAAAACTGTATCACTCAGTTTCCAATTGATATACAATAGGATTCTACAGTGATTTGTAAAGCTATATTATTCAATGAAGAGCTGGACATTTATTCCTGCAATTTATAGCTTTATGATTTTGTTGCCT</genome_strand>
        <mrna_strand>TAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG............................................................................................................................................................................................................................................................GTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGTAATTCCTCCTTATATAGAGGTCCATTTTGTTTAGGAGAAAACTGTATCACTCAGTTTCCAATTGATATACAATAGGATTCTACAGTGATTTGTAAAGCTATATTATTCAATGAAGAGCTGGACATTTATTCCTGCAATTTATAGCTTTATGATTTTGTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597736" ref_strand="+" ref_description="SGN-E597736 [67608]">
      <seq>cgagggtgataaagcgacagtgctatgggcaggagttctgaatggtgtcaccatggaggtacctccattgaaggaatatagacattcgttctccttgtatttcctggttccaggtgagtacacactattagctgctgctgtgattgatgatgctaatgaaatgctccgagccagagcaagagctacttcatgtgatgagtccatattttgtcgtgggccaccgttccatatccgagtgaatgggactatgtgatgtccttgttgaagtgtccatagtttactaaaccaggtgaaactttccagcctcaactatttgtagaacttgttatttgcactttgtatttcttgtaattcctcctttataagagttccaatttgtttaggagagaactgtatcactcagtttccaattgatatacaataggattcttacggcgatttgtaaagctgtactgttcaatgaagaggtggacatttattcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="42013" stop="40679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41713" g_stop="41682" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41681" i_stop="41430" i_length="252">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41429" g_stop="40979" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="484" r_length="452" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E597736" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41713" e_stop="41682"/>
          <exon e_start="41429" e_stop="40979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTGATAAAGCGACAGTGCTATGGGCAGGTGCTATTCTAAAACATTACTAGTTTCCATCTCCATGTTCTTTTTAAAGTTAAAATACCACTGTAATTTTGTATCTGCATGTGTATCATTTTAACATTTGCTTTTAGAACAGTATTTTTTGCTTATGTACCGAACACGGAAAAATAAGCCAGAAACACACCCTAAGAGAGCAGCTATACTTATAATGTGTAATTGAAGACCAAACTTACTCTTGATCTGATATGTGTATTGACCTGTCTTGATCTTTTTTAGGTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGTAATTCCTCC-TTATATAGAGGTCCATTTTGTTTAGGAGAAAACTGTATCACTCAGTTTCCAATTGATATACAATAGGATTC-TACAGTGATTTGTAAAGCTATATTATTCAATGAAGAGCTGGACATTTATTCCTG</genome_strand>
        <mrna_strand>CGAGGGTGATAAAGCGACAGTGCTATGGGCAG............................................................................................................................................................................................................................................................GAGTTCTGAATGGTGTCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTATTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTACTTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATGTCCTTGTTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTTGTATTTCTTGTAATTCCTCCTTTATA-AGAGTTCCAATTTGTTTAGGAGAGAACTGTATCACTCAGTTTCCAATTGATATACAATAGGATTCTTACGGCGATTTGTAAAGCTGTACTGTTCAATGAAGAGGTGGACATTTATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709896" ref_strand="+" ref_description="SGN-E709896 [FA53CD02]">
      <seq>cgggataggaccagtactagaaaatcaagcttctctgagaaaagtagcaaagctgaacttaatgcttccatcaaaaatttaatttctaaaatcaaagtcaggtggcaatctggccgaaacaattcaggagaactaaacataaaagatgcaatacaggctgcgcttcaatcatccatgatggatgtattactacctgatccattgacctttgggtttaggtgtggcaataatacttcacaaaattcttctgaccttaatatggatgaaggatctaatattcagggtgcgcgtaaaggttcagtaaaagctcatgacacgacaccagtagaagtgctggttcgcaataataccaaggaaatgattagagtcagtcttagcatcacatgcagagatatagctggggagaactgtgtcgagggtgataaagcgacagtgctatgggcaggtgttctgaatggtatcaccatggaggtacctccattgaaggaatatagacattcgttctccttgtatttcctggttccaggtgagtacacacttttagctgctgctgtgattgatgatgctaatgaaatgctccgagccagagcaagagctaattcatgtgatgagtccatattttgtcgtgggccaccgttccatatccgagtgaatgggactatgtgatatccttattgaagtgtccatagtttactaaaccaggtgaaactttccagcctcaactatttgtagaacttgttatttgcccttcgtatttcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="42424" stop="40813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42126" g_stop="41682" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41681" i_stop="41430" i_length="252">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41429" g_stop="41113" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="762" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E709896" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42126" e_stop="41682"/>
          <exon e_start="41429" e_stop="41113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAGGTGCTATTCTAAAACATTACTAGTTTCCATCTCCATGTTCTTTTTAAAGTTAAAATACCACTGTAATTTTGTATCTGCATGTGTATCATTTTAACATTTGCTTTTAGAACAGTATTTTTTGCTTATGTACCGAACACGGAAAAATAAGCCAGAAACACACCCTAAGAGAGCAGCTATACTTATAATGTGTAATTGAAGACCAAACTTACTCTTGATCTGATATGTGTATTGACCTGTCTTGATCTTTTTTAGGTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGT</genome_strand>
        <mrna_strand>CGGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG............................................................................................................................................................................................................................................................GTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCCCTTCGTATTTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574015" ref_strand="+" ref_description="SGN-E574015 [33416]">
      <seq>aaaagacgcaatacaggctgcgcttcaatcatccatgatggatgtattactacctgatccattgacctttgggtttaggtgtggcaataatacttcgcaagattttgctgaccttaatttggatgaaggatctaatgttcagggtgcacgtaaaggttcagtaagagctcatgacacgacaccagtagaagtgctggttcgcaataataccaaggaaatgattagagtcagtcttagcatcacatgtagagatatagctggggagaactgcgtcgagggtgataaagcgacagtgctatgggcaggagttctgaatggtgtcaccatggaggtacctccattgtaggaatatagacattcgttctccttgtatttcctggttccaggtgagtacacactattagctgctgctgtgattgatgatgctaatgaaatgctccgagccagagcaagagctacttcatgtgatgagtccatattttgtcgtggggcaccgttccatatccgagtgaatgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="42286" stop="40916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41986" g_stop="41682" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41681" i_stop="41430" i_length="252">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41429" g_stop="41216" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="519" r_length="214" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E574015" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41986" e_stop="41682"/>
          <exon e_start="41429" e_stop="41216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAGGTGCTATTCTAAAACATTACTAGTTTCCATCTCCATGTTCTTTTTAAAGTTAAAATACCACTGTAATTTTGTATCTGCATGTGTATCATTTTAACATTTGCTTTTAGAACAGTATTTTTTGCTTATGTACCGAACACGGAAAAATAAGCCAGAAACACACCCTAAGAGAGCAGCTATACTTATAATGTGTAATTGAAGACCAAACTTACTCTTGATCTGATATGTGTATTGACCTGTCTTGATCTTTTTTAGGTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGAC</genome_strand>
        <mrna_strand>AAAAGACGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCGCAAGATTTTGCTGACCTTAATTTGGATGAAGGATCTAATGTTCAGGGTGCACGTAAAGGTTCAGTAAGAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGTAGAGATATAGCTGGGGAGAACTGCGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG............................................................................................................................................................................................................................................................GAGTTCTGAATGGTGTCACCATGGAGGTACCTCCATTGTAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTATTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTACTTCATGTGATGAGTCCATATTTTGTCGTGGGGCACCGTTCCATATCCGAGTGAATGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740657" ref_strand="+" ref_description="SGN-E740657 [LC22BE08]">
      <seq>ataatacttcacaaaattcttctgaccttaatatggatgaaggatctaatattcagggtgcgcgtaaaggttcagtaaaagctcatgacacgacaccagtagaagtgctggttcgcaataataccaaggaaatgattagagtcagtcttagcatcacatgcagagatatagctggggagaactgtgtcgagggtgataaagcgacagtgctatgggcaggtgttctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="42200" stop="41375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41900" g_stop="41682" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41681" i_stop="41430" i_length="252">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41429" g_stop="41419" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="230" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E740657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41900" e_stop="41682"/>
          <exon e_start="41429" e_stop="41419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAGGTGCTATTCTAAAACATTACTAGTTTCCATCTCCATGTTCTTTTTAAAGTTAAAATACCACTGTAATTTTGTATCTGCATGTGTATCATTTTAACATTTGCTTTTAGAACAGTATTTTTTGCTTATGTACCGAACACGGAAAAATAAGCCAGAAACACACCCTAAGAGAGCAGCTATACTTATAATGTGTAATTGAAGACCAAACTTACTCTTGATCTGATATGTGTATTGACCTGTCTTGATCTTTTTTAGGTGTTCTGAAT</genome_strand>
        <mrna_strand>ATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG............................................................................................................................................................................................................................................................GTGTTCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740299" ref_strand="+" ref_description="SGN-E740299 [LC20DE03]">
      <seq>ataatacttcacaaaattcttctgaccttaatatggatgaaggatctaatattcagggtgcgcgtaaaggttcagtaaaagctcatgacacgacaccagtagaagtgctggttcgcaataataccaaggaaatgattagagtcagtcttagcatcacatgcagagatatagctggggagaactgtgtcgagggtgataaagcgacagtgctatgggcaggtgttctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="42200" stop="41375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41900" g_stop="41682" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41681" i_stop="41430" i_length="252">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41429" g_stop="41420" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="229" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E740299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41900" e_stop="41682"/>
          <exon e_start="41429" e_stop="41420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAGGTGCTATTCTAAAACATTACTAGTTTCCATCTCCATGTTCTTTTTAAAGTTAAAATACCACTGTAATTTTGTATCTGCATGTGTATCATTTTAACATTTGCTTTTAGAACAGTATTTTTTGCTTATGTACCGAACACGGAAAAATAAGCCAGAAACACACCCTAAGAGAGCAGCTATACTTATAATGTGTAATTGAAGACCAAACTTACTCTTGATCTGATATGTGTATTGACCTGTCTTGATCTTTTTTAGGTGTTCTGAA</genome_strand>
        <mrna_strand>ATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG............................................................................................................................................................................................................................................................GTGTTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419633" ref_strand="+" ref_description="SGN-E419633 [STM-29-P10]">
      <seq>ggaggagatgcatcaacaaatggatctattcctcctggtaggcgcttggtcgttccccttaatatatgtgtttcacaggggttatctcttatgaaggcccgtttgttatcaatggagatccctgctcatgttggtgaggatcattcaaaagttcaggtggaaaccagttctgctgaaggatcccctcgtactgataggttcatgaaaattgatccttacagaggaagttggggcctgcgtttcctcgagcttgagttatccaatccgactgatgttgtctttgagattggtgtgtctgtcaatatggaggattcgaacactgaggagaatcctgagtatgattatcctaaaactaggattgacagagattacactgccagggtgctaataccattagaacattttaagttgccggttcttgatggtactttcctggttaaggagtctcaaatgaatgggaccgctactagaaaatcaagcttctctgagaaaagtagcaaagctgaacttaatgcttccatcaaaaatttaatttctaaaatcaaagtcaggtggcaatctggccgaaacaattcaggagaactaaacataaaagacgcaatacaggctgcgcttcaatcatccatgatggatgtattactacctgatccattgacctttgggtttaagtgtggcaataatacttcgcaagattttgctgaccttaatttggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="42873" stop="41561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42576" g_stop="41861" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E419633" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42576" e_stop="41861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGA</genome_strand>
        <mrna_strand>GGAGGAGATGCATCAACAAATGGATCTATTCCTCCTGGTAGGCGCTTGGTCGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCCCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAAAGTTCAGGTGGAAACCAGTTCTGCTGAAGGATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTTGAGATTGGTGTGTCTGTCAATATGGAGGATTCGAACACTGAGGAGAATCCTGAGTATGATTATCCTAAAACTAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTGCCGGTTCTTGATGGTACTTTCCTGGTTAAGGAGTCTCAAATGAATGGGACCGCTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGACGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAAGTGTGGCAATAATACTTCGCAAGATTTTGCTGACCTTAATTTGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604639" ref_strand="+" ref_description="SGN-E604639 [74776]">
      <seq>tggatgcagtcctgtgctgctgatccactatgcgggtccacttacttatgctggaggagatgcatcaacaaatggatctattcctcctggtaggcgcttggtcgttccccttaatatatgcgtttcacaggggttatctcttatgaaggcccgtttgttatcaatggagatccctgctcatgttggtgaggatcattcaaaagttcaagtggaaaccagttctgctgaaggatcccctcgtactgataggttcatgaaaattgatccttacagaggaagttggggcctgcgtttcctcgagcttgagttatccaatccgactgatgttgtctttgagattggtgtgtctgtcaatatggaggattcgaacactgaggagaatcctgagtatgattatcctaaaactaggattgacagagattacactgccagggtgctaataccattagaacattttaagttgccggttcttgatggtactttcctggttaaggagtctcaaatgaatgggaccgctactagaaaatcaagcttctctgagaaaagtagcaaagctgaacttaatgcttccatcaaaaatttaatttctaaaatcaaagtcaggtggcaatctggccgaaacaattcaggagaactaaacataaaagacgcaatacaggctgcgcttcaatcatccatgatggatgtattactacctgatccattgacctttgggtttaggtgtggcaataatacttcgcaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="43887" stop="41584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43587" g_stop="43553" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43552" i_stop="42591" i_length="962">
            <donor d_prob="0.836" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42590" g_stop="41884" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="745" r_length="710" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E604639" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43587" e_stop="43553"/>
          <exon e_start="42590" e_stop="41884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGCAGTCCTGTGCTGCTGATCCACTATGCGGGTGAGCATTCAAATACTGATTGTTGGAGGTTAGGTGATAGACTAGGAAAATGAAACACTGTGAACTTGGGATGCTGCATCCTGGTTCTACGAACATATATTAGTGCAACAAGCTGGGAAAGTCCCTGCACTCTCTAGGGCCCCTCTTGTTTGTGTTGCTTTCCCATCAATTATGAGGGGTCCTTTCTTTTTTCTTTGTTTCCATATGACTCAGAATGTACACAATGCATGTGGATTTGGATATGGATGTTGATATGACTTTTTTTTAAAATTTTTTTGCATAACCACTTGTTTTTGCAATCTGAAAGAGTCAGTCAGGCTGGTGGTGAGCTTCTGCAACAACATGAGAATCATATTTGTTTAGAATGAAATTGAGAGAGATAAATGTTAGGGACCAAATCAAATATTGGCCATGAAATTGGGAACAAAGATAGAACTTACACCGTGGGTATACATGGAATATTTTTGTACAATACTAAAAGACAATGTAAAATGATGGAAGTGTAGGATGTCAATTAGTTGGTCACTAATCATGACATGATTACGTGCAGAGAGTTTTAGTTAAGAGAACATTCTGCAGCATGGGATGAGATTTTATTTGTTTTGACTTTCCGTTTTGTTTCTGAAATGTATTAGCCTCATGCTTTAGTCAGTCATTTGAGGTTCATGATTTAGACTGTTATTTACCTGCCAATTTTTTTGTTATGATTTATTACTATTTGGATTCTCTAATTGGTTATCAGAAACAGCCTCTCTACCTCATAGGTAGGGGTAAGGCTGCATACTCACCACACTCCCCAGACCCCACTTGTTGGATTTCATGTACATCTAGTTGTATTACATAATGATTTGCTACTCTTGTTGTCCATTAACTCATCCTGGATGTTTAGATTCTCTAACTGGTGTTTGGGGCTGGGTAGCATAGAATTTCTTCTATATTGACTGATCTACTTCTCTTATCAGGTCCACTTACTTATGCT---GGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAAT</genome_strand>
        <mrna_strand>TGGATGCAGTCCTGTGCTGCTGATCCACTATGCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACTTACTTATGCTGGAGGAGATGCATCAACAAATGGATCTATTCCTCCTGGTAGGCGCTTGGTCGTTCCCCTTAATATATGCGTTTCACAGGGGTTATCTCTTATGAAGGCCCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAAAGTTCAAGTGGAAACCAGTTCTGCTGAAGGATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTTGAGATTGGTGTGTCTGTCAATATGGAGGATTCGAACACTGAGGAGAATCCTGAGTATGATTATCCTAAAACTAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTGCCGGTTCTTGATGGTACTTTCCTGGTTAAGGAGTCTCAAATGAATGGGACCGCTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGACGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCGCAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213350" ref_strand="+" ref_description="SGN-E213350 [cLEC-71-E13]">
      <seq>tcctcttactgcatggagtgcagcagcacgtcttcttaggtcctattatcctcttataacacctgctgggcaaaatggtcttgcgagtgcactttcaaatgcgtctgagagacttccctcaggaactcgctgtgctgatcctgcattgccttttataaggtccacttacttatgctggagatgcatcaataaatggatctattcctcccggtaggcgattggttgttccccttaatatatgtgtttcacaggggttatctcttatgaaggctcgtttgttatcaatggagatccctgctcatgttggtgaggatcattcaaatgttcaagtggaaaccagttctgctgaagaatcccctcgtactgataggttcatgaaaattgatccttacagaggaagttggggcctgcgtttcctcgagcttgagttatccaatccgactgatgttgtcttcgagattggcgtgtctgtcaatatggaggattctaacaatgaggagaatcctgagtatgactatcctaaaacaaggattgacagagattacactgccagggtgctaataccattagaacattttaagttacctgttcttgatggtacttacctggttaaggagtctcaaatggatangaccagtactagaaaatcaagcttctctgagaaaagtagcaaagctgaacttaatgcttccatcaaaaattaattttctaaatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="47252" stop="41730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46952" g_stop="46794" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46793" i_stop="42591" i_length="4203">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42590" g_stop="42030" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="719" r_length="560" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E213350" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46952" e_stop="46794"/>
          <exon e_start="42590" e_stop="42030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAGGTATTGTTTGTAAAATATAACAAAGCTTCTTATGTGATGGAGATTCTTATATTTTCTGTTTTAGAGTACTGACTCTTCATAGTTGAGCAAATATTTCAGCTCATCTTGTTTTCTCATCTTGTCTCAAAGCTGAAAATTCTCCTCATTTATAGAGGCAGGGATACAGGAAGCTGGTGTCTTATTCTTTGCCACACACTAGTCAGTTGTTACATTGAACTGTGCGGTTCCAAATACCCAAGCTTCAAAGTAGGAAATAGATTGTTTTGTAAACGGACGGAAACCATGTAAATTACCTTGTTTTGCACTTTGTATTTTGTAGATTTTAGATGGCACATTGCGCAATGCCAGATGGGGAAGCTTGGGGTCCTTGTACTATATGTCATTGCTGGTGTCTAATTTTCACAAAATTCTGCTTTTCCCTGTGTTTGATGTAACATGACGTGCAAAAAAAGAAGTCCGCTTCTTTTAAGTCATGTCACTAAATTGCCAGAGAAGGTTTTGATTCATTTGTTTATTTGGTGTCAAGAAAATGTTCCCTTTTGTATAGATTGCTGAATTGATACTTGTGTATGATTAATGCTATACCTTTTGTAAAGATGATCTCGTTTCAGCGTGACATGAATTAAAATGATTTAATTGTCAGAAGATATTGTTTCACTGGCTTGTGTATGTGCTAGACCATTAGCAGTTGACGAAAGATTTAAGTTGTATGCCAGTGAGTTGATAGACTCATCCTGTGCCCACGTTGAGTAAGGGTAAGTTTGAAAGGCAGACTATAAGGACAGAACAGCTAAGCTAATGATCTGTAGCAGCTATTTCCCTCACCTGGTGGCTATAAGTGGAGACGAGAAACTGAAATGAGGTGTATCAATAGAAAATAGGAGCTGAAAGATGAATTGTGCTTCTAGCTTTTATCTGGGTAATGTTAGACTTAGGTTTGTCATTTGTGGCCATTCAATTATCAATGATGAAGAAAAGGATGAAAGAAATGGTATTTCTATAAAGGATATCTTTCAATAGTGTACTTTTGATATTGTTTGCTTTCCTTGATTCCTACTTTGTTATTCTGTTTGTGGGTTGCGTATGTTGCCCCTTAACTAGATGCTTGGGGTGTGTTCGGTATGATGGAAAATGTTCTCTCGGAAAAGACGTGGGTTTCTTCCTTATTTTCTTGTGTTCAGTATGCAAGCAAAAAATAATATCCTAAAAGCATTTGTTATAATCTAGACATACTCTATAGGAGTTGAAGGTGGAAGGTAGGGGATGTGGGGTGGTGGGGATGGGATGGCGGTGGGGTGAAGATGAGGTGTGTTGGAAGGTGAAGAGGACACTATCAATGTGAAATGTCACTTGTGTAACTTGTTTTCCATACTTTCATTAGGGAAGTCATTTCCTCATTTTTAAGGAACTTATTTTCCTAGGGAAAATGTTCTCCAAAAATTTTGACCTACCAAACATGGGAAAATCAGAATCTTTTCTGGAAAATATTTTCCTTCATACAAAATACATGCTAGAAGTGTTTGGTTCTCCTCTTGCAGTGTTATATCATCTTTTATTGCGTATGAGACGGGCAAAGGAGGAAATAGGTAGAGTAAATGAACTGAGCTTACCAATTCAGAAAGATGTAACGATATGGTAGTTGTCTTTGTTGCTTCATTCTTTTCAGTTTCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTGGTTTTATGGTGTCTGCAATTGCTGACCTTATCATCAGAGTTCTTATTTTTGACAAGAACCTAATTTTCCTTTCCTTGATACATATGCTCCAGGTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAAGTAGGTTCATTAAAAATTCCAGGATGCATTGTTCATTGTTTTGGTGTTATCACTGAACATTATTTTAAGGATGTGGATAATCTTCTAGTGGGAGCAGCTCAAGGACTTGTGCTGTCTGACCCTTTCCGCTGTTGTGGGTCACCAAAGTTGAAAAATGTTACGATTCCAAATATTTCGGTGGTCCCCCCGTTGCCATTGCTTATATCACGTGTTGTGGGTAGTGATGGTGCTATAATTTTATATGAAGGAGAGATTCGTGAAGTACAGATAAGTGTGGCCAATGCAGGTACAGTTCCGATAGAGCAAGCCCACATCTCATTATCTGGGAAAAATCAAGATTCAATCCAGTTAATTGTTTATGAAACCTTGAAGTCATCCCTTCCTTTGAAGCCCGGTGCTGAAGTGAGAATACCTGTCACTTTAAAGACTTGGCAGCTTGGACTTTTGGATCCGGATGCTGCTCCTAGTAAGAACATATCTGGAAGCACCGGGAGGCAAGTCAAGGATGGATGCAGTCCTGTGCTGCTGATCCACTATGCGGGTGAGCATTCAAATACTGATTGTTGGAGGTTAGGTGATAGACTAGGAAAATGAAACACTGTGAACTTGGGATGCTGCATCCTGGTTCTACGAACATATATTAGTGCAACAAGCTGGGAAAGTCCCTGCACTCTCTAGGGCCCCTCTTGTTTGTGTTGCTTTCCCATCAATTATGAGGGGTCCTTTCTTTTTTCTTTGTTTCCATATGACTCAGAATGTACACAATGCATGTGGATTTGGATATGGATGTTGATATGACTTTTTTTTAAAATTTTTTTGCATAACCACTTGTTTTTGCAATCTGAAAGAGTCAGTCAGGCTGGTGGTGAGCTTCTGCAACAACATGAGAATCATATTTGTTTAGAATGAAATTGAGAGAGATAAATGTTAGGGACCAAATCAAATATTGGCCATGAAATTGGGAACAAAGATAGAACTTACACCGTGGGTATACATGGAATATTTTTGTACAATACTAAAAGACAATGTAAAATGATGGAAGTGTAGGATGTCAATTAGTTGGTCACTAATCATGACATGATTACGTGCAGAGAGTTTTAGTTAAGAGAACATTCTGCAGCATGGGATGAGATTTTATTTGTTTTGACTTTCCGTTTTGTTTCTGAAATGTATTAGCCTCATGCTTTAGTCAGTCATTTGAGGTTCATGATTTAGACTGTTATTTACCTGCCAATTTTTTTGTTATGATTTATTACTATTTGGATTCTCTAATTGGTTATCAGAAACAGCCTCTCTACCTCATAGGTAGGGGTAAGGCTGCATACTCACCACACTCCCCAGACCCCACTTGTTGGATTTCATGTACATCTAGTTGTATTACATAATGATTTGCTACTCTTGTTGTCCATTAACTCATCCTGGATGTTTAGATTCTCTAACTGGTGTTTGGGGCTGGGTAGCATAGAATTTCTTCTATATTGACTGATCTACTTCTCTTATCAGGTCCACTTACTTATGCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAG</genome_strand>
        <mrna_strand>TCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACTTACTTATGCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATANGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTAATTTTCT-AAATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444519" ref_strand="+" ref_description="SGN-E444519 [cSTA-43-O17]">
      <seq>ggaggagatgcatcaacaaatggatctattcctcctggtaggcgcttggtcgttccccttaatatatgtgtttcacaggggttatctcttatgaaggcccgtttgttatcaatggagatccctgctcatgttggtgaggatcattcaaaagttcaggtggaaaccagttctgctgaaggatcccctcgtactgataggttcatgaaaattgatccttacagaggaagttggggcctgcgtttcctcgagcttgagttatccaatccgactgatgttgtctttgagattggtgtgtctgtcaatatggaggattcgaacactgaggagaatcctgagtatgattatcctaaaactaggattgacagagattacactgccagggtgctaataccattagaacattttaagttgccggttcttgatggtactttcctggttaaggagtctcaaatgaatgggaccgctactagaaaatcaagcttctctgagaaaagtagcaaagctgaacttaatgcttccatcaaaaatttaatttctaaaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="42873" stop="41732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42576" g_stop="42032" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E444519" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42576" e_stop="42032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAA</genome_strand>
        <mrna_strand>GGAGGAGATGCATCAACAAATGGATCTATTCCTCCTGGTAGGCGCTTGGTCGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCCCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAAAGTTCAGGTGGAAACCAGTTCTGCTGAAGGATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTTGAGATTGGTGTGTCTGTCAATATGGAGGATTCGAACACTGAGGAGAATCCTGAGTATGATTATCCTAAAACTAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTGCCGGTTCTTGATGGTACTTTCCTGGTTAAGGAGTCTCAAATGAATGGGACCGCTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E602617" ref_strand="+" ref_description="SGN-E602617 [55685]">
      <seq>aaagatgtggataatcttctagtgggagcagctcaaggacttgtgctgtctgaccctttccgctgttgtgggtcaccaaagttgaaaaatgttacggttccaaatatttcggtggtccccccgctgccattgcttatatcacgtgttgtgggtagtgatggtgctataattttatatgaaggagagattcgtgaagtagagataagcgtggccaatgcaggtacagttccaatagagcaagcccacatctcattatctgggaaaaatcaagattcaatccagttaattgtttatgaaacgttgaagtcttcccttcctttgaagcccggtgctgaagtgagaatacctgtcactttaaaggcttggcagctcggatttttggatccagctgctgctcctggtaagaacatatctggaagcaccgggaggcaagtcaaggatggatgcagtcctgtgctgctgatccactatgcgggtccacttacttatgctggaggagatgcatcaacaaatggatctattcctcctggtaggcgcttggtcgttccccttaatatatgcgtttcacaggggttatctcttatgaaggcccgtttgttatcaatggagatccctgctcatgttggtgaggatcattcaaaagttcaagtggaaaccagttctgctgaaggatcccctcgtactgataggttcatgaaaattgattccttacagaggaagttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="44327" stop="42044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44027" g_stop="43553" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43552" i_stop="42591" i_length="962">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42590" g_stop="42344" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="726" r_length="251" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E602617" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44027" e_stop="43553"/>
          <exon e_start="42590" e_stop="42344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATGTGGATAATCTTCTAGTGGGAGCAGCTCAAGGACTTGTGCTGTCTGACCCTTTCCGCTGTTGTGGGTCACCAAAGTTGAAAAATGTTACGATTCCAAATATTTCGGTGGTCCCCCCGTTGCCATTGCTTATATCACGTGTTGTGGGTAGTGATGGTGCTATAATTTTATATGAAGGAGAGATTCGTGAAGTACAGATAAGTGTGGCCAATGCAGGTACAGTTCCGATAGAGCAAGCCCACATCTCATTATCTGGGAAAAATCAAGATTCAATCCAGTTAATTGTTTATGAAACCTTGAAGTCATCCCTTCCTTTGAAGCCCGGTGCTGAAGTGAGAATACCTGTCACTTTAAAGACTTGGCAGCTTGGACTTTTGGATCCGGATGCTGCTCCTAGTAAGAACATATCTGGAAGCACCGGGAGGCAAGTCAAGGATGGATGCAGTCCTGTGCTGCTGATCCACTATGCGGGTGAGCATTCAAATACTGATTGTTGGAGGTTAGGTGATAGACTAGGAAAATGAAACACTGTGAACTTGGGATGCTGCATCCTGGTTCTACGAACATATATTAGTGCAACAAGCTGGGAAAGTCCCTGCACTCTCTAGGGCCCCTCTTGTTTGTGTTGCTTTCCCATCAATTATGAGGGGTCCTTTCTTTTTTCTTTGTTTCCATATGACTCAGAATGTACACAATGCATGTGGATTTGGATATGGATGTTGATATGACTTTTTTTTAAAATTTTTTTGCATAACCACTTGTTTTTGCAATCTGAAAGAGTCAGTCAGGCTGGTGGTGAGCTTCTGCAACAACATGAGAATCATATTTGTTTAGAATGAAATTGAGAGAGATAAATGTTAGGGACCAAATCAAATATTGGCCATGAAATTGGGAACAAAGATAGAACTTACACCGTGGGTATACATGGAATATTTTTGTACAATACTAAAAGACAATGTAAAATGATGGAAGTGTAGGATGTCAATTAGTTGGTCACTAATCATGACATGATTACGTGCAGAGAGTTTTAGTTAAGAGAACATTCTGCAGCATGGGATGAGATTTTATTTGTTTTGACTTTCCGTTTTGTTTCTGAAATGTATTAGCCTCATGCTTTAGTCAGTCATTTGAGGTTCATGATTTAGACTGTTATTTACCTGCCAATTTTTTTGTTATGATTTATTACTATTTGGATTCTCTAATTGGTTATCAGAAACAGCCTCTCTACCTCATAGGTAGGGGTAAGGCTGCATACTCACCACACTCCCCAGACCCCACTTGTTGGATTTCATGTACATCTAGTTGTATTACATAATGATTTGCTACTCTTGTTGTCCATTAACTCATCCTGGATGTTTAGATTCTCTAACTGGTGTTTGGGGCTGGGTAGCATAGAATTTCTTCTATATTGACTGATCTACTTCTCTTATCAGGTCCACTTACTTATGCT---GGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGA-TCCTTACAGAGGAAGTTGGGG</genome_strand>
        <mrna_strand>AAAGATGTGGATAATCTTCTAGTGGGAGCAGCTCAAGGACTTGTGCTGTCTGACCCTTTCCGCTGTTGTGGGTCACCAAAGTTGAAAAATGTTACGGTTCCAAATATTTCGGTGGTCCCCCCGCTGCCATTGCTTATATCACGTGTTGTGGGTAGTGATGGTGCTATAATTTTATATGAAGGAGAGATTCGTGAAGTAGAGATAAGCGTGGCCAATGCAGGTACAGTTCCAATAGAGCAAGCCCACATCTCATTATCTGGGAAAAATCAAGATTCAATCCAGTTAATTGTTTATGAAACGTTGAAGTCTTCCCTTCCTTTGAAGCCCGGTGCTGAAGTGAGAATACCTGTCACTTTAAAGGCTTGGCAGCTCGGATTTTTGGATCCAGCTGCTGCTCCTGGTAAGAACATATCTGGAAGCACCGGGAGGCAAGTCAAGGATGGATGCAGTCCTGTGCTGCTGATCCACTATGCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACTTACTTATGCTGGAGGAGATGCATCAACAAATGGATCTATTCCTCCTGGTAGGCGCTTGGTCGTTCCCCTTAATATATGCGTTTCACAGGGGTTATCTCTTATGAAGGCCCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAAAGTTCAAGTGGAAACCAGTTCTGCTGAAGGATCCCCTCGTACTGATAGGTTCATGAAAATTGATTCCTTACAGAGGAAGTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332599" ref_strand="+" ref_description="SGN-E332599 [cTOD-18-O10]">
      <seq>aagcttatcgtgttcaaagtagagcctctactgaccatgctctttatcaggaaagtggacaaaatcatgttgatggtggaaaagcgcatcacaattggatagtatcactatttgaatctcaatggagtagcattcaaatggttgttttgagggaaatacttctatcagctgttcgtggtggagatcctcttactgcatggagtgcagcagcacgtcttcttaggtcctattatcctcttataacacctgctgggcaaaatggtcttgcgagtgcactttcaaatgcgtctgagagacttccctcaggaactcgctgtgctgatcctgcattgccttttataaggttgcattcttttccacttcattcctcccaacaggatatagtaaaacgtaatcatgggagagatgattggtgggcagggtctgctccttcaggaccttttatttacacacctttcagcaaaggggagccaagtcaaagcagtaagcaggagctgatttgggttgtgggtgaagcagtacaagtgtttgttgagttggcaaatccttgtggttttgatttgaaggtcgatagtatatatctatctgtaaattctgggaattttgatgcttttcccatcagtgttagtctgcctcctaattctccaaagtgattgcattatctggaattcctactgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="48921" stop="43793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48621" g_stop="48572" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48571" i_stop="47087" i_length="1485">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47086" g_stop="46794" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="343" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46793" i_stop="44431" i_length="2363">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44430" g_stop="44094" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="679" r_length="336" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E332599" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48621" e_stop="48572"/>
          <exon e_start="47086" e_stop="46794"/>
          <exon e_start="44430" e_stop="44094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAGGTGACTCAAAAATTCATTGTTTTTCATGATGCAACAAACAGCTTACATGCAGGGCTTCACTTTAAGTTGCACCACCCTACAGTCCTGCTCCTTCTGGTTCTACGGGAAGGACACAAACACGTTGTACTGGCTTTTAAAGGAGCAAAAATCTATCTACAGTATGGGTTGGGAACTATTTTTGTTCACATACTTGATCCGATATAATTGGTTGTACAAAGTCTTCATAACTTTTCAAATGAACTGTCTTCTCAAGCTTATGAAACATGTGTTTCAAATGAATTCTTTCTTTGGGCGTGTCAGTTGAAGACTGAATATAGATCTGTCACCACCTGCAATTCCATAATAATTTTGGCAAAAGACTGAGAAAACAATACTCCCTCTGTCCCAATTTATGGGACACCCTTTCCTTTTTAGTCCGTTCCCAAAAAATGTCATCTTACTGTAATTAGAAACAATTTCACTTTCAAATTCCCCTTTTACCCTTGAAGATTAATGAAATGATTTACGACCACACACATATCTTAAGGATTATTTTAGACCACAAGTTAAAGTCTTCCTTTTTTTCTTAAACACTGTGTGGCGCCACATAAAATGGGACGGAGGGAGTAATTTATTTATTCATCAGTAGGAGGTTTCCATGCTAATACAATGAAAATCCAATGGGAAGTCGTTGAATATATGGCAAAAAGGATATAATATTTAATCTACTACCATTGTGTTGTCGCACCAAAGTATAAGGGTAGTGAGAAACTAGACATTCACAGAAGTTCTCATAGAATTGTTCATCGACGGGTTTTGGTTTAGTAGTGTTGTTGACGTGACCCTTGAGAGAAATGTAGTGTCGCAACTATCTACTTGATGGCTTAATCATACCTCAAACATTTAAATTTCAAATGCCCAAGCATTCAGGATAGATTGTATTATTTTTTATTTACAAGGAGGGGGCAACAGAAAATAGATGAAATAGAAAGAATACTGTAAATCCGAGTCCACGGAAATCACTGTGTTTCTGTCTACTGTCTACTGGAATTGGTGCACCTCCTACGGCATGCAGCGTGACTTGGATCCATAACACAATGGAGATTTCATACTGTCATAAAAACTTCTTGAAAATGCATACCAAGATAGGAAGATGCAGTTTCCAAAGGAATTCATGTGGCTTGCTGTGGGAATCTGTAGTTCAGTGCTTCAGTTTTGGAGATATTAGGCTAGATTGAAGTATTGAACAATCATTATCAGTTATGGTACGATATAAGGTGAAAGCTAGAGTCTGTATGCGGATTCATCTTGGCTGTCAGTCATATACATCGGATCAATGGCCTTTTTAGTAGATCCTGTCTGTGCACATTTTAGATTGTTTTGGAGTCAAAATACATGCTAAGTGTGTGTGTCATAAGGCTTCTTTATCATAGTTTCTTTTAACTCATCCTGGTACCAATAAAAGATTTAACATTTATTTTCCATCTCTCTTCATTATATATGAAGGAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAGGTATTGTTTGTAAAATATAACAAAGCTTCTTATGTGATGGAGATTCTTATATTTTCTGTTTTAGAGTACTGACTCTTCATAGTTGAGCAAATATTTCAGCTCATCTTGTTTTCTCATCTTGTCTCAAAGCTGAAAATTCTCCTCATTTATAGAGGCAGGGATACAGGAAGCTGGTGTCTTATTCTTTGCCACACACTAGTCAGTTGTTACATTGAACTGTGCGGTTCCAAATACCCAAGCTTCAAAGTAGGAAATAGATTGTTTTGTAAACGGACGGAAACCATGTAAATTACCTTGTTTTGCACTTTGTATTTTGTAGATTTTAGATGGCACATTGCGCAATGCCAGATGGGGAAGCTTGGGGTCCTTGTACTATATGTCATTGCTGGTGTCTAATTTTCACAAAATTCTGCTTTTCCCTGTGTTTGATGTAACATGACGTGCAAAAAAAGAAGTCCGCTTCTTTTAAGTCATGTCACTAAATTGCCAGAGAAGGTTTTGATTCATTTGTTTATTTGGTGTCAAGAAAATGTTCCCTTTTGTATAGATTGCTGAATTGATACTTGTGTATGATTAATGCTATACCTTTTGTAAAGATGATCTCGTTTCAGCGTGACATGAATTAAAATGATTTAATTGTCAGAAGATATTGTTTCACTGGCTTGTGTATGTGCTAGACCATTAGCAGTTGACGAAAGATTTAAGTTGTATGCCAGTGAGTTGATAGACTCATCCTGTGCCCACGTTGAGTAAGGGTAAGTTTGAAAGGCAGACTATAAGGACAGAACAGCTAAGCTAATGATCTGTAGCAGCTATTTCCCTCACCTGGTGGCTATAAGTGGAGACGAGAAACTGAAATGAGGTGTATCAATAGAAAATAGGAGCTGAAAGATGAATTGTGCTTCTAGCTTTTATCTGGGTAATGTTAGACTTAGGTTTGTCATTTGTGGCCATTCAATTATCAATGATGAAGAAAAGGATGAAAGAAATGGTATTTCTATAAAGGATATCTTTCAATAGTGTACTTTTGATATTGTTTGCTTTCCTTGATTCCTACTTTGTTATTCTGTTTGTGGGTTGCGTATGTTGCCCCTTAACTAGATGCTTGGGGTGTGTTCGGTATGATGGAAAATGTTCTCTCGGAAAAGACGTGGGTTTCTTCCTTATTTTCTTGTGTTCAGTATGCAAGCAAAAAATAATATCCTAAAAGCATTTGTTATAATCTAGACATACTCTATAGGAGTTGAAGGTGGAAGGTAGGGGATGTGGGGTGGTGGGGATGGGATGGCGGTGGGGTGAAGATGAGGTGTGTTGGAAGGTGAAGAGGACACTATCAATGTGAAATGTCACTTGTGTAACTTGTTTTCCATACTTTCATTAGGGAAGTCATTTCCTCATTTTTAAGGAACTTATTTTCCTAGGGAAAATGTTCTCCAAAAATTTTGACCTACCAAACATGGGAAAATCAGAATCTTTTCTGGAAAATATTTTCCTTCATACAAAATACATGCTAGAAGTGTTTGGTTCTCCTCTTGCAGTGTTATATCATCTTTTATTGCGTATGAGACGGGCAAAGGAGGAAATAGGTAGAGTAAATGAACTGAGCTTACCAATTCAGAAAGATGTAACGATATGGTAGTTGTCTTTGTTGCTTCATTCTTTTCAGTTTCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTGGTTTTATGGTGTCTGCAATTGCTGACCTTATCATCAGAGTTCTTATTTTTGACAAGAACCTAATTTTCCTTTCCTTGATACATATGCTCCAGGTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAA</genome_strand>
        <mrna_strand>AAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATT-CTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332851" ref_strand="+" ref_description="SGN-E332851 [cTOD-18-P12]">
      <seq>aagcttatcgtgttcaaagtagagcctctactgaccatgctctttatcaggaaagtggacaaaatcatgttgatggtggaaaagcgcatcacaattggatagtatcactatttgaatctcaatggagtagcattcaaatggttgttttgagggaaatacttctatcagctgttcgtggtggagatcctcttactgcatggagtgcagcagcacgtcttcttaggtcctattatcctcttataacacctgctgggcaaaatggtcttgcgagtgcactttcaaatgcgtctgagagacttccctcaggaactcgctgtgctgatcctgcattgccttttataaggttgcattcttttccacttcattcctcccaacaggatatagtaaaacgtaatcatgggagagatgattggtgggcagggtctgctccttcaggaccttttatttacacacctttcagcaaaggggagccaagtcaaagcagtaagcaggagctgatttgggttgtgggtgaagcagtacaagtgtttgttgagttggcaaatccttgtggttttgatttgaaggtcgatagtatatatctatctgtaaattctggggattttgatgcttttcccatcagtgttagtctgcctcctaattcctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="48921" stop="43827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48621" g_stop="48572" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48571" i_stop="47087" i_length="1485">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47086" g_stop="46794" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="343" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46793" i_stop="44431" i_length="2363">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44430" g_stop="44127" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="647" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E332851" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48621" e_stop="48572"/>
          <exon e_start="47086" e_stop="46794"/>
          <exon e_start="44430" e_stop="44127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAGGTGACTCAAAAATTCATTGTTTTTCATGATGCAACAAACAGCTTACATGCAGGGCTTCACTTTAAGTTGCACCACCCTACAGTCCTGCTCCTTCTGGTTCTACGGGAAGGACACAAACACGTTGTACTGGCTTTTAAAGGAGCAAAAATCTATCTACAGTATGGGTTGGGAACTATTTTTGTTCACATACTTGATCCGATATAATTGGTTGTACAAAGTCTTCATAACTTTTCAAATGAACTGTCTTCTCAAGCTTATGAAACATGTGTTTCAAATGAATTCTTTCTTTGGGCGTGTCAGTTGAAGACTGAATATAGATCTGTCACCACCTGCAATTCCATAATAATTTTGGCAAAAGACTGAGAAAACAATACTCCCTCTGTCCCAATTTATGGGACACCCTTTCCTTTTTAGTCCGTTCCCAAAAAATGTCATCTTACTGTAATTAGAAACAATTTCACTTTCAAATTCCCCTTTTACCCTTGAAGATTAATGAAATGATTTACGACCACACACATATCTTAAGGATTATTTTAGACCACAAGTTAAAGTCTTCCTTTTTTTCTTAAACACTGTGTGGCGCCACATAAAATGGGACGGAGGGAGTAATTTATTTATTCATCAGTAGGAGGTTTCCATGCTAATACAATGAAAATCCAATGGGAAGTCGTTGAATATATGGCAAAAAGGATATAATATTTAATCTACTACCATTGTGTTGTCGCACCAAAGTATAAGGGTAGTGAGAAACTAGACATTCACAGAAGTTCTCATAGAATTGTTCATCGACGGGTTTTGGTTTAGTAGTGTTGTTGACGTGACCCTTGAGAGAAATGTAGTGTCGCAACTATCTACTTGATGGCTTAATCATACCTCAAACATTTAAATTTCAAATGCCCAAGCATTCAGGATAGATTGTATTATTTTTTATTTACAAGGAGGGGGCAACAGAAAATAGATGAAATAGAAAGAATACTGTAAATCCGAGTCCACGGAAATCACTGTGTTTCTGTCTACTGTCTACTGGAATTGGTGCACCTCCTACGGCATGCAGCGTGACTTGGATCCATAACACAATGGAGATTTCATACTGTCATAAAAACTTCTTGAAAATGCATACCAAGATAGGAAGATGCAGTTTCCAAAGGAATTCATGTGGCTTGCTGTGGGAATCTGTAGTTCAGTGCTTCAGTTTTGGAGATATTAGGCTAGATTGAAGTATTGAACAATCATTATCAGTTATGGTACGATATAAGGTGAAAGCTAGAGTCTGTATGCGGATTCATCTTGGCTGTCAGTCATATACATCGGATCAATGGCCTTTTTAGTAGATCCTGTCTGTGCACATTTTAGATTGTTTTGGAGTCAAAATACATGCTAAGTGTGTGTGTCATAAGGCTTCTTTATCATAGTTTCTTTTAACTCATCCTGGTACCAATAAAAGATTTAACATTTATTTTCCATCTCTCTTCATTATATATGAAGGAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAGGTATTGTTTGTAAAATATAACAAAGCTTCTTATGTGATGGAGATTCTTATATTTTCTGTTTTAGAGTACTGACTCTTCATAGTTGAGCAAATATTTCAGCTCATCTTGTTTTCTCATCTTGTCTCAAAGCTGAAAATTCTCCTCATTTATAGAGGCAGGGATACAGGAAGCTGGTGTCTTATTCTTTGCCACACACTAGTCAGTTGTTACATTGAACTGTGCGGTTCCAAATACCCAAGCTTCAAAGTAGGAAATAGATTGTTTTGTAAACGGACGGAAACCATGTAAATTACCTTGTTTTGCACTTTGTATTTTGTAGATTTTAGATGGCACATTGCGCAATGCCAGATGGGGAAGCTTGGGGTCCTTGTACTATATGTCATTGCTGGTGTCTAATTTTCACAAAATTCTGCTTTTCCCTGTGTTTGATGTAACATGACGTGCAAAAAAAGAAGTCCGCTTCTTTTAAGTCATGTCACTAAATTGCCAGAGAAGGTTTTGATTCATTTGTTTATTTGGTGTCAAGAAAATGTTCCCTTTTGTATAGATTGCTGAATTGATACTTGTGTATGATTAATGCTATACCTTTTGTAAAGATGATCTCGTTTCAGCGTGACATGAATTAAAATGATTTAATTGTCAGAAGATATTGTTTCACTGGCTTGTGTATGTGCTAGACCATTAGCAGTTGACGAAAGATTTAAGTTGTATGCCAGTGAGTTGATAGACTCATCCTGTGCCCACGTTGAGTAAGGGTAAGTTTGAAAGGCAGACTATAAGGACAGAACAGCTAAGCTAATGATCTGTAGCAGCTATTTCCCTCACCTGGTGGCTATAAGTGGAGACGAGAAACTGAAATGAGGTGTATCAATAGAAAATAGGAGCTGAAAGATGAATTGTGCTTCTAGCTTTTATCTGGGTAATGTTAGACTTAGGTTTGTCATTTGTGGCCATTCAATTATCAATGATGAAGAAAAGGATGAAAGAAATGGTATTTCTATAAAGGATATCTTTCAATAGTGTACTTTTGATATTGTTTGCTTTCCTTGATTCCTACTTTGTTATTCTGTTTGTGGGTTGCGTATGTTGCCCCTTAACTAGATGCTTGGGGTGTGTTCGGTATGATGGAAAATGTTCTCTCGGAAAAGACGTGGGTTTCTTCCTTATTTTCTTGTGTTCAGTATGCAAGCAAAAAATAATATCCTAAAAGCATTTGTTATAATCTAGACATACTCTATAGGAGTTGAAGGTGGAAGGTAGGGGATGTGGGGTGGTGGGGATGGGATGGCGGTGGGGTGAAGATGAGGTGTGTTGGAAGGTGAAGAGGACACTATCAATGTGAAATGTCACTTGTGTAACTTGTTTTCCATACTTTCATTAGGGAAGTCATTTCCTCATTTTTAAGGAACTTATTTTCCTAGGGAAAATGTTCTCCAAAAATTTTGACCTACCAAACATGGGAAAATCAGAATCTTTTCTGGAAAATATTTTCCTTCATACAAAATACATGCTAGAAGTGTTTGGTTCTCCTCTTGCAGTGTTATATCATCTTTTATTGCGTATGAGACGGGCAAAGGAGGAAATAGGTAGAGTAAATGAACTGAGCTTACCAATTCAGAAAGATGTAACGATATGGTAGTTGTCTTTGTTGCTTCATTCTTTTCAGTTTCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTGGTTTTATGGTGTCTGCAATTGCTGACCTTATCATCAGAGTTCTTATTTTTGACAAGAACCTAATTTTCCTTTCCTTGATACATATGCTCCAGGTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCC</genome_strand>
        <mrna_strand>AAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGGATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202461" ref_strand="+" ref_description="SGN-E202461 [cLEC-6-G4]">
      <seq>tccaatccaagcatccatgtatatgtaaattttgagtgaaatgttctatgctgaatcagaagtatgttggtgatgctggtatttcttcatggtttattgtattagacactgctaactagatcttgcttgaaagataatcaaattgcctttgtaaaggctggttgtacttcagcgtttattgtattgcacattacttactagatcatgcctgaaagatgctcaaattacctgtttgaaggccaatacatgtattgaccatatcttcagcatatagttaggagtttactgataagctcataaaatcagaagaattctaattccatcaggaataaccttttttttatcataagaactattcttttaatgtattcctgtagctaacatactattactaatggtggtaaacttgcaaaagactatttggaacttctttcactagtctctctagaaagaagtaaatttaatctggttcgatcttcatagttccttcagattttactattattagttttgctgtttcagaatgatcttcccgcatactgatactctagattttatggtatctgcagttgctggcttatttctttcctcagactgatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="45425" stop="44223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45125" g_stop="44523" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E202461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45125" e_stop="44523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTG</genome_strand>
        <mrna_strand>TCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374772" ref_strand="+" ref_description="SGN-E374772 [TUS-14-D22]">
      <seq>tccaatccaagcatccatgtatatgtaaattttgagtgaaatgttctatgctgaatcagaagtatgttggtgatgctggtatttcttcatggtttattgtattagacactgctaactagatcttgcttgaaagataatcaaattgcctttgtaaaggctggttgtacttcagcgtttattgtattgcacattacttactagatcatgcctgaaagatgctcaaattacctgtttgaaggccaatacatgtattgaccatatcttcagcatatagttaggagtttactgataagctcataaaatcagaagaattctaattccatcaggaataaccttttttttatcataagaactattcttttaatgtattcctgtagctaacatactattactaatggtggtaaacttgcaaaagactatttggaacttctttcactagtctctctagaaagaagtaaatttaatctggttcgatcttcatagttccttcagattttactattattagttttgctgtttcagaatgactcttcccgcatactgatactctagattttatggtatctgcagtttgctggcttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="45425" stop="44243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45125" g_stop="44543" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E374772" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45125" e_stop="44543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGA-TCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAG-TTGCTGGCTTATTT</genome_strand>
        <mrna_strand>TCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGACTCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTTGCTGGCTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328521" ref_strand="+" ref_description="SGN-E328521 [cTOC-23-C6]">
      <seq>ttcagcggtgcttcgcattttgccccggtgactctcagctagaggatgaaagcttcaaggggagcaacttaattttgtttccccctgctgatcgtcaaactcaagaattccacttgcaaactatgatgcaagatattgctgcctcattgttgatgaaatttgaaaaatcagttcttcaagcagagtctggtggaactattctcaagacacctttagattcccaagcgagtcttagctcagaggaggttcatattttaggtcatcaaggctaaaaaacgaagattgggccgtgcacagaaaactatcggggattactgtctgttggcagggtcacctgttgatgctaatgcccattatacaacttcattggagcttgctagattgactggagacttcttttggtatgctggggcaatggaaggcagtgtttgtgctctgttgatagatcaaatgggtcagagggatcaatttctagatgatgaggtcaagcaccgttacaataatgtcattttgcattacagaaagtcatttattcaagacaatgctcaaagagtttctcctctaagtttcgagcttgaggctactctcaaattagcacgatacctctgcangaangagttggccaangaagtggttgatttgttgactacngctgctgatggagcaaatctttgattgatgctagtgacagattgatattattcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="54978" stop="48460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54678" g_stop="54641" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54640" i_stop="53263" i_length="1378">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53262" g_stop="53043" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="258" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53042" i_stop="52939" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52938" g_stop="52756" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="441" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52755" i_stop="51168" i_length="1588">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51167" g_stop="51058" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="551" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51057" i_stop="49899" i_length="1159">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49898" g_stop="49839" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="611" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49838" i_stop="48858" i_length="981">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48857" g_stop="48760" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="708" r_length="97" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E328521" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54678" e_stop="54641"/>
          <exon e_start="53262" e_stop="53043"/>
          <exon e_start="52938" e_stop="52756"/>
          <exon e_start="51167" e_stop="51058"/>
          <exon e_start="49898" e_stop="49839"/>
          <exon e_start="48857" e_stop="48760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAGGTTCTATTTCTGTTTGATACTATTTGATACATGTAACTGAGTAGGATCTAGCATATAAGCAGCTTATACCAACATAAATTAAACTTGGATATATTTATATGTATCTAGAATAATTTGAAGAAAAGACTGTTTGGGAAAGATTTAATATTTGTAACAATAGGAACTGAATGCCTGTGCTATTTTTTTGAAATTTGTTATAAGGATGAAATCCACTTGTAGAATTAAGGTTTGGGGATATTGAATTTAGAATTGTTACATCTGCTTTAGGACTTGGAGGATCATAAACTAGCTTACTCCAATTTTGCAGCAAATTATAGATACTTTATTGTTTTCACTTCTTTCTCAGTCAATTAATCAACTATGCCTCAAGTCTAAATCATTTGTGGTCAGGTATATGATTTTCTTATATCCATTCAGTTGTTTGACACTGCTTTGTATTTTTCCTGGCTATCTTAGGTTCGAGTTCTGTTTGAGTTCTTTGTTGTATAATTGATGTTTGGAAATGTTCTATTACTGGTAGAGATTGGACTTGAATAGAGGAAATGAATATGGTCATTCAAAAGAAAAAAGTCATACAGAGATTCATGTAATTAACCCAACTTATCTGGGATTCAGACATAGCTGTTTAATTGATTGATAGATATTGGACATGTGAATTTCTGCAATATATATAAAATTGAATTACAGAAAATTTGATTGAATTGAATGTAATTAAATATGCTTTAAGGCTTTGAGGATCATAAGCTAGCAAACCATCTACTCCTTTGTGCAGAAACTGCAGATACTTCAGTCTTGTCCTCTTTGTACCCAAAATAGAGAAAAAGAAAAAAGAAACAGAAGTTATGTCAGTGCATACAATATGATTAGACTCTACTGTTTTATGAATAAATGAATCTTTCAGTTGCTCCACTGTTCCAAACTAATTGGGGTAAGCGATCTGATATGTACCCTCTATGTACTTGCAACTCTATTCATTTGGATACACATTAATGTATTTTCAAAGATAATTTATGGATTACTGGAAATCTAATGTTCTCTAAGTCTACACTTACCCATACTCTCAACACACACATCACTAGCAAAACTGAATAGATCCCTGGTGGATATGAATAGATAAGTATATATATGTGTGTGTGTGTGAATACTCTTTTGAAGGATAGGCTTTTGAAAGCTCATATAACTTAATTTTTTCATTATTTTCTTTTTGAATAATTAAATGCAGTGCTTAAGATACTTCTCTGGGTGCATTCTTGAATGGGTAATCAGTTTGCTCACTGTTAAGTTCGCGATCAAAAGCTCCTGACTGTAGAAGTGTCCTTGTTTTCAAGTTTGCTCTTTTCATGCATGACATGCCTAAACTGCATTTTTTATTGTGCAGCTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAGGTGTTTTGAGGATTGATTTGTATAGTTATCTTGTTTAGTTTCTTGATAGGATTTCATCGTCATTTAAATTATTAACTTCTTGATTGCATTGGAGAACCTTATAGGTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTGGTGAGTATGAACATACTCTTAGTGATGTCAGTGCATCTTATTAGAAATTTAGTTCATAATCCACGAGAAGTCATTTCTTGACACACAACTAAATAAGCTGTACATTTTAGACTACATTTTGGAGTTGGAAACCATATTTGACACCTACACAAATGCCCACATACCATGTCAAAACTATTTTTCAAAATAATGGTAGGAGTTGGAAACCATATTTGACAACTACACACCCACTTATACTTCTTGATTTATTTTATCCACACCGTTTTTGTCTACCAATTGGGAATGCTGTTTACCAGCTAAACATCTTCCAGAGCAAATCCCCGATTTTCTGTTCTTTCTTGTTCCTTTTTCTCCCTTCTTGGGGTGGGTGCAGGGAAATTTTTTCTGGTATGGAGTGTAATTTATTAAATTAATATATTCTCCAGTTTTGTTTGGTATTTTTGAATTCTGTTACCTGCTTGACCCTGCATTCATGTAGGAACATGCATCTTTATTTTTCAAGGGGTTAAAAAAGAAATGTATAATGTCTGTCTTGTACTTTTTGTGTTATGGACCCTCTCAATCTTTCATAGTATTACAGTTTGCTTGTAATGAACACAGTGCCTTTTTAGCTACAGAGATAGATGATTACTGATGATACTGTCTAAGAAAGGGACAGAGAAATTTCTTGTATGAATTTGAGAGGACACCATTAAGAGGGGTTTTTTTCTGTATATTCAAATCATGTTTTATCCTCCCATAAAATTTAATTCTACTGTCAATCATGTGTCGTAATTGAAATGACAGCAATCAGTTAGGTTTATTGATGTTGTTGGCTGGATATAGCTCCAGATAAGTATTGCAAACATACATCTGTTTGCAACTGAAGGCATTTCAGTGAAGTTCATGGATGAATATAGACCTTATGTGTTTGTTTTATCTTGGATGTTTTGGGGTGGTGGAGCACATCTTTAAGATGAGATTAGAACATGGTTGCTAAGGTCCTGAGAAGGATGAGGGAACCTTGAGACTAGTAAAGGTATGGGTTGCTCAATTTTTTTTTTATGACAAGGGAAACCCGCAGCCGCTACCTTTTGGGTGCACACAGGGTGAAACCCCCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGAGGACGAGCTCGACCCAAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGGGTTGCTCAGATTGTTCCAAGGGTTTATGTGTTCTAACCTGTTCTATGTTTCCTGTTGACAATCCATGGATGCCTCTATTACCTTTGATACAAACTAAAGTGGCAGGTACATAAAACTTGAATTAGAAGGAACACTAACTTTTTGTGAAAAATGATGCAGTATTGCAGATGTCAAAGCCATGAGATAGTAATACTTATTAAAGAGTTGAGTGCATTTCTGCATTGTATATTATGTTGCCATTTTGTCTATTTCTTCTCAAGAGCTTATTCATTCTTCAAGTCAAAAGGTCTTAGTTTAATCTCCTTACTTGAATCTCATGGTTATTATTTTGATGATTAGATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAGGTATCTGTGTGTCTTAATCTTTCTGTAGGTGTAGTTACAACTTACATAAGTACCTTTATCATGTCTTTTTTCTTATTGTGATTGGGTATATAATTTGTATTTGCCATCCCTTTCTTTCCGATTCACGCACAAGAGTTTTGAGGGGGAAAACACTATCTTTTTTTTTTCCGATGATGTAAGTGATATCATTAAAAATGAATCAAGAAGATGCAGTTGTTACAAGATATGACATTGAAGCTCTCAAAAAATCTTGTCACCTATACAAAAACTGTCTATGACAGAGTGAGGGAACTATTGAAGTCTAATAGTTGATCTGAACCATTAACTGGGAACAAACTGGACCAGCGATGTAACCCCAGGAATAAAAATGGACTTCAAATTATATTTCCATCTTAATTTTTGTAGTGTCACAGGATTCCTTGATAATGGATATGTAGTAATCATTATGTTAGGAACCTGCAAGTTCTATGAGAGTAAAGTAAAAAGACTAAGTTGCTTATTTTGGTGGTGTGGCTATTTGGAAGTTCTTAATTTTTGTTTTGTTCGTAAAATGACTTAGTTCCCAGCCCCATTTTTGGCAGTTTAGCAGATCACAGAACAATTTAGTCACTTGTTCAGGAAGTCTAGAACTCCTTGATACAGGGCAAGTTACTGTGAAATCCATCATAATTTGCATGTTGAACAACTTTGACTGATCGGTAGATGAAGTAATAGTTGGAGGCTGACTCAGATAAACTTATATGACTGAAGTGTGGGAAAACTATGTTGCTGTGTGAGGAATTGCCACCTTTCTATATTGAAGAAAAGCTTGAATTACAAGCCTTTTTGTCAAAAATAAAAAAGAAGAAAAGTTAGCATGACATAACACTAGTGATATGGATCTTTATCCTATGACCAAACTATTTAACGATTTAAATTGTTCATGTATAACAAAGAGCCATCGCTATGTCTTTTCTCTGTGTGGCTCAGTTGTTGGACTGTTGATTAAGATAATCCTCATTTTGGTAGGGGTTCAAAATGGATTTATTCTTCTTATCTTCTTTGTGGTATAAACTAGATGATTTCCCTTTTCAACTAGCAATAGGTATATTGCTGAATCTAGATTTCTGATTATTTTCTTTTTCAGCATATATAACTGTAAATATTGTTTTTGGTGCAGAGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAGGTACTCTTTGTAAAGATCAAATATAATTCTGGAATGATCTTCTTTGTAACCCGTTTAGTTATGTTCTTTTCTTGATAAAAACCAGTTTAATAATGACTTGCAGCTATATTCTCAAAAAATAATGACTGGCAGCTACACTGTAAACTTGCTGTGTTCTCTCTGTTCTTTCCTTTTGACGTACTTATATGTTAATTGAAATCCTTTTGGGAAGATATGTAAGTTGAGGTTTAACTTCTGAATGATAATAATTTGGTGGGATTTAATTGAGTATAGACGTATGATGCTGTGCTTATGATTTACTGGCTACAGACTAAGACCACAGCCCTCCAATAACTATGTGGAGTGGGGTGAAGAGGAGAAGGTTTGACGGAAAGTGAAAAAGAAGTAAACTAAGAAATTTCAATATTCCAATTTTTCTTTTAGTGTTAAAAAAGTAAACTATCAAATTTCCACATTTAGCAAACAGCAGATTTTGTTTCCCCCCAATATGCTTCTGCTTGTGATTAATCTAGGTTACTCATTAAGTCTAAGCTACAGAAATATGTTCCTCAGCAGTTATGGACTTCAGTTTTTGTAGAAAATGAGAAACTATAAAACTGATGATGTATCTGTCTATCTGAATTCAAATCAAATTGCCCTTACAAAAAATGTTCAAATCAATGGTAAAAACAGAAAATAGCATAAATATTAGTACTAGTTTCAAAAGAATAAATATTAGTACCTAAATCTGCAACGTACAGTATCTTCATTTCGTTAGACTTCAATAATGCCTACTGTATATCTTTTGCTTATATGATGTAGTTCATCAAAGAGAAGCCAATGATACCTCGCCTTTTCAAAATGCATCTTGTTACCGATCACTTCAAACTTTTTGGCTGAAATCTGGAAGATCTTGATGTAACATTACTTAGAAGAAGAGCTACTTCTGTCATATATATATCTTCTTGAGCAGTTTTTGACTTATACTTCTTGGTTTGGCAGGAAGGAGTTGGCCAAGGAAGTGGTTGATTTGTTGACTACGGCTGCTGATGGAGCAAAATCTTTGATTGATGCTAGTGACAGATTGATATTATTCATTG</genome_strand>
        <mrna_strand>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAG........................................................................................................GTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAN.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAANGAGTTGGCCAANGAAGTGGTTGATTTGTTGACTACNGCTGCTGATGGAGC-AAATCTTTGATTGATGCTAGTGACAGATTGATATTATTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329093" ref_strand="+" ref_description="SGN-E329093 [cTOC-24-P5]">
      <seq>ttcagcggtgcttcgcattttgccccggtgactctcagctagaggatgaaagcttcaaggggagcaacttaattttgtttccccctgctgatcgtcaaactcaagaattccacttgcaaactatgatgcaagatattgctgcctcattgttgatgaaatttgaaaaatcagttcttcaagcagagtctggtggaactattctcaagacacctttagattcccaagcgagtcttagctcagaggaggttcatattttaggtcatcaaggctaaaaaacgaagattgggccgtgcacagaaaactatcggggattactgtctgttggcagggtcacctgttgatgctaatgcccattatacaacttcattggagcttgctagattgactggagacttcttttggtatgctggggcaatggaaggcagtgtttgtgctctgttgatagatcaaatgggtcagagggatcaatttctagatgatgaggtcaagcaccgttacaataatgtcattttgcattacagaaagtcatttattcaagacaatgctcaaagagtttctcctctaagtttcgagcttgaggctactctcaaattagcacgatacctctgcaggaaggagttggccaaggaagtggttgatttgttgactacggctgctgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="54978" stop="48507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54678" g_stop="54641" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54640" i_stop="53263" i_length="1378">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53262" g_stop="53043" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="258" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53042" i_stop="52939" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52938" g_stop="52756" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="441" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52755" i_stop="51168" i_length="1588">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51167" g_stop="51058" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="551" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51057" i_stop="49899" i_length="1159">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49898" g_stop="49839" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="611" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49838" i_stop="48858" i_length="981">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48857" g_stop="48807" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="662" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E329093" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54678" e_stop="54641"/>
          <exon e_start="53262" e_stop="53043"/>
          <exon e_start="52938" e_stop="52756"/>
          <exon e_start="51167" e_stop="51058"/>
          <exon e_start="49898" e_stop="49839"/>
          <exon e_start="48857" e_stop="48807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAGGTTCTATTTCTGTTTGATACTATTTGATACATGTAACTGAGTAGGATCTAGCATATAAGCAGCTTATACCAACATAAATTAAACTTGGATATATTTATATGTATCTAGAATAATTTGAAGAAAAGACTGTTTGGGAAAGATTTAATATTTGTAACAATAGGAACTGAATGCCTGTGCTATTTTTTTGAAATTTGTTATAAGGATGAAATCCACTTGTAGAATTAAGGTTTGGGGATATTGAATTTAGAATTGTTACATCTGCTTTAGGACTTGGAGGATCATAAACTAGCTTACTCCAATTTTGCAGCAAATTATAGATACTTTATTGTTTTCACTTCTTTCTCAGTCAATTAATCAACTATGCCTCAAGTCTAAATCATTTGTGGTCAGGTATATGATTTTCTTATATCCATTCAGTTGTTTGACACTGCTTTGTATTTTTCCTGGCTATCTTAGGTTCGAGTTCTGTTTGAGTTCTTTGTTGTATAATTGATGTTTGGAAATGTTCTATTACTGGTAGAGATTGGACTTGAATAGAGGAAATGAATATGGTCATTCAAAAGAAAAAAGTCATACAGAGATTCATGTAATTAACCCAACTTATCTGGGATTCAGACATAGCTGTTTAATTGATTGATAGATATTGGACATGTGAATTTCTGCAATATATATAAAATTGAATTACAGAAAATTTGATTGAATTGAATGTAATTAAATATGCTTTAAGGCTTTGAGGATCATAAGCTAGCAAACCATCTACTCCTTTGTGCAGAAACTGCAGATACTTCAGTCTTGTCCTCTTTGTACCCAAAATAGAGAAAAAGAAAAAAGAAACAGAAGTTATGTCAGTGCATACAATATGATTAGACTCTACTGTTTTATGAATAAATGAATCTTTCAGTTGCTCCACTGTTCCAAACTAATTGGGGTAAGCGATCTGATATGTACCCTCTATGTACTTGCAACTCTATTCATTTGGATACACATTAATGTATTTTCAAAGATAATTTATGGATTACTGGAAATCTAATGTTCTCTAAGTCTACACTTACCCATACTCTCAACACACACATCACTAGCAAAACTGAATAGATCCCTGGTGGATATGAATAGATAAGTATATATATGTGTGTGTGTGTGAATACTCTTTTGAAGGATAGGCTTTTGAAAGCTCATATAACTTAATTTTTTCATTATTTTCTTTTTGAATAATTAAATGCAGTGCTTAAGATACTTCTCTGGGTGCATTCTTGAATGGGTAATCAGTTTGCTCACTGTTAAGTTCGCGATCAAAAGCTCCTGACTGTAGAAGTGTCCTTGTTTTCAAGTTTGCTCTTTTCATGCATGACATGCCTAAACTGCATTTTTTATTGTGCAGCTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAGGTGTTTTGAGGATTGATTTGTATAGTTATCTTGTTTAGTTTCTTGATAGGATTTCATCGTCATTTAAATTATTAACTTCTTGATTGCATTGGAGAACCTTATAGGTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTGGTGAGTATGAACATACTCTTAGTGATGTCAGTGCATCTTATTAGAAATTTAGTTCATAATCCACGAGAAGTCATTTCTTGACACACAACTAAATAAGCTGTACATTTTAGACTACATTTTGGAGTTGGAAACCATATTTGACACCTACACAAATGCCCACATACCATGTCAAAACTATTTTTCAAAATAATGGTAGGAGTTGGAAACCATATTTGACAACTACACACCCACTTATACTTCTTGATTTATTTTATCCACACCGTTTTTGTCTACCAATTGGGAATGCTGTTTACCAGCTAAACATCTTCCAGAGCAAATCCCCGATTTTCTGTTCTTTCTTGTTCCTTTTTCTCCCTTCTTGGGGTGGGTGCAGGGAAATTTTTTCTGGTATGGAGTGTAATTTATTAAATTAATATATTCTCCAGTTTTGTTTGGTATTTTTGAATTCTGTTACCTGCTTGACCCTGCATTCATGTAGGAACATGCATCTTTATTTTTCAAGGGGTTAAAAAAGAAATGTATAATGTCTGTCTTGTACTTTTTGTGTTATGGACCCTCTCAATCTTTCATAGTATTACAGTTTGCTTGTAATGAACACAGTGCCTTTTTAGCTACAGAGATAGATGATTACTGATGATACTGTCTAAGAAAGGGACAGAGAAATTTCTTGTATGAATTTGAGAGGACACCATTAAGAGGGGTTTTTTTCTGTATATTCAAATCATGTTTTATCCTCCCATAAAATTTAATTCTACTGTCAATCATGTGTCGTAATTGAAATGACAGCAATCAGTTAGGTTTATTGATGTTGTTGGCTGGATATAGCTCCAGATAAGTATTGCAAACATACATCTGTTTGCAACTGAAGGCATTTCAGTGAAGTTCATGGATGAATATAGACCTTATGTGTTTGTTTTATCTTGGATGTTTTGGGGTGGTGGAGCACATCTTTAAGATGAGATTAGAACATGGTTGCTAAGGTCCTGAGAAGGATGAGGGAACCTTGAGACTAGTAAAGGTATGGGTTGCTCAATTTTTTTTTTATGACAAGGGAAACCCGCAGCCGCTACCTTTTGGGTGCACACAGGGTGAAACCCCCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGAGGACGAGCTCGACCCAAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGGGTTGCTCAGATTGTTCCAAGGGTTTATGTGTTCTAACCTGTTCTATGTTTCCTGTTGACAATCCATGGATGCCTCTATTACCTTTGATACAAACTAAAGTGGCAGGTACATAAAACTTGAATTAGAAGGAACACTAACTTTTTGTGAAAAATGATGCAGTATTGCAGATGTCAAAGCCATGAGATAGTAATACTTATTAAAGAGTTGAGTGCATTTCTGCATTGTATATTATGTTGCCATTTTGTCTATTTCTTCTCAAGAGCTTATTCATTCTTCAAGTCAAAAGGTCTTAGTTTAATCTCCTTACTTGAATCTCATGGTTATTATTTTGATGATTAGATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAGGTATCTGTGTGTCTTAATCTTTCTGTAGGTGTAGTTACAACTTACATAAGTACCTTTATCATGTCTTTTTTCTTATTGTGATTGGGTATATAATTTGTATTTGCCATCCCTTTCTTTCCGATTCACGCACAAGAGTTTTGAGGGGGAAAACACTATCTTTTTTTTTTCCGATGATGTAAGTGATATCATTAAAAATGAATCAAGAAGATGCAGTTGTTACAAGATATGACATTGAAGCTCTCAAAAAATCTTGTCACCTATACAAAAACTGTCTATGACAGAGTGAGGGAACTATTGAAGTCTAATAGTTGATCTGAACCATTAACTGGGAACAAACTGGACCAGCGATGTAACCCCAGGAATAAAAATGGACTTCAAATTATATTTCCATCTTAATTTTTGTAGTGTCACAGGATTCCTTGATAATGGATATGTAGTAATCATTATGTTAGGAACCTGCAAGTTCTATGAGAGTAAAGTAAAAAGACTAAGTTGCTTATTTTGGTGGTGTGGCTATTTGGAAGTTCTTAATTTTTGTTTTGTTCGTAAAATGACTTAGTTCCCAGCCCCATTTTTGGCAGTTTAGCAGATCACAGAACAATTTAGTCACTTGTTCAGGAAGTCTAGAACTCCTTGATACAGGGCAAGTTACTGTGAAATCCATCATAATTTGCATGTTGAACAACTTTGACTGATCGGTAGATGAAGTAATAGTTGGAGGCTGACTCAGATAAACTTATATGACTGAAGTGTGGGAAAACTATGTTGCTGTGTGAGGAATTGCCACCTTTCTATATTGAAGAAAAGCTTGAATTACAAGCCTTTTTGTCAAAAATAAAAAAGAAGAAAAGTTAGCATGACATAACACTAGTGATATGGATCTTTATCCTATGACCAAACTATTTAACGATTTAAATTGTTCATGTATAACAAAGAGCCATCGCTATGTCTTTTCTCTGTGTGGCTCAGTTGTTGGACTGTTGATTAAGATAATCCTCATTTTGGTAGGGGTTCAAAATGGATTTATTCTTCTTATCTTCTTTGTGGTATAAACTAGATGATTTCCCTTTTCAACTAGCAATAGGTATATTGCTGAATCTAGATTTCTGATTATTTTCTTTTTCAGCATATATAACTGTAAATATTGTTTTTGGTGCAGAGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAGGTACTCTTTGTAAAGATCAAATATAATTCTGGAATGATCTTCTTTGTAACCCGTTTAGTTATGTTCTTTTCTTGATAAAAACCAGTTTAATAATGACTTGCAGCTATATTCTCAAAAAATAATGACTGGCAGCTACACTGTAAACTTGCTGTGTTCTCTCTGTTCTTTCCTTTTGACGTACTTATATGTTAATTGAAATCCTTTTGGGAAGATATGTAAGTTGAGGTTTAACTTCTGAATGATAATAATTTGGTGGGATTTAATTGAGTATAGACGTATGATGCTGTGCTTATGATTTACTGGCTACAGACTAAGACCACAGCCCTCCAATAACTATGTGGAGTGGGGTGAAGAGGAGAAGGTTTGACGGAAAGTGAAAAAGAAGTAAACTAAGAAATTTCAATATTCCAATTTTTCTTTTAGTGTTAAAAAAGTAAACTATCAAATTTCCACATTTAGCAAACAGCAGATTTTGTTTCCCCCCAATATGCTTCTGCTTGTGATTAATCTAGGTTACTCATTAAGTCTAAGCTACAGAAATATGTTCCTCAGCAGTTATGGACTTCAGTTTTTGTAGAAAATGAGAAACTATAAAACTGATGATGTATCTGTCTATCTGAATTCAAATCAAATTGCCCTTACAAAAAATGTTCAAATCAATGGTAAAAACAGAAAATAGCATAAATATTAGTACTAGTTTCAAAAGAATAAATATTAGTACCTAAATCTGCAACGTACAGTATCTTCATTTCGTTAGACTTCAATAATGCCTACTGTATATCTTTTGCTTATATGATGTAGTTCATCAAAGAGAAGCCAATGATACCTCGCCTTTTCAAAATGCATCTTGTTACCGATCACTTCAAACTTTTTGGCTGAAATCTGGAAGATCTTGATGTAACATTACTTAGAAGAAGAGCTACTTCTGTCATATATATATCTTCTTGAGCAGTTTTTGACTTATACTTCTTGGTTTGGCAGGAAGGAGTTGGCCAAGGAAGTGGTTGATTTGTTGACTACGGCTGCTGATGG</genome_strand>
        <mrna_strand>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAG........................................................................................................GTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTTGGCCAAGGAAGTGGTTGATTTGTTGACTACGGCTGCTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327242" ref_strand="+" ref_description="SGN-E327242 [cTOC-19-O5]">
      <seq>ttcagcggtgcttcgcattttgccccggtgactctcagctagaggatgaaagcttcaaggggagcaacttaattttgtttccccctgctgatcgtcaaactcaagaattccacttgcaaactatgatgcaagatattgctgcctcattgttgatgaaatttgaaaaatcagttcttcaagcagagtctggtggaactattctcaagacacctttagattcccaagcgagtcttagctcagaggaggttcatattttaggtcatcaaggctaaaaaacgaagattgggccgtgcacagaaaactatcggggattactgtctgttggcagggtcacctgttgatgctaatgcccattatacaacttcattggagcttgctagattgactggagacttcttttggtatgctggggcaatggaaggcagtgtttgtgctctgttgatagatcaaatgggtcagagggatcaatttctagatgatgaggtcaagcaccgttacaataatgtcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="54978" stop="50797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54678" g_stop="54641" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54640" i_stop="53263" i_length="1378">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53262" g_stop="53043" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="258" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53042" i_stop="52939" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52938" g_stop="52756" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="441" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52755" i_stop="51168" i_length="1588">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51167" g_stop="51097" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="512" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E327242" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54678" e_stop="54641"/>
          <exon e_start="53262" e_stop="53043"/>
          <exon e_start="52938" e_stop="52756"/>
          <exon e_start="51167" e_stop="51097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAGGTTCTATTTCTGTTTGATACTATTTGATACATGTAACTGAGTAGGATCTAGCATATAAGCAGCTTATACCAACATAAATTAAACTTGGATATATTTATATGTATCTAGAATAATTTGAAGAAAAGACTGTTTGGGAAAGATTTAATATTTGTAACAATAGGAACTGAATGCCTGTGCTATTTTTTTGAAATTTGTTATAAGGATGAAATCCACTTGTAGAATTAAGGTTTGGGGATATTGAATTTAGAATTGTTACATCTGCTTTAGGACTTGGAGGATCATAAACTAGCTTACTCCAATTTTGCAGCAAATTATAGATACTTTATTGTTTTCACTTCTTTCTCAGTCAATTAATCAACTATGCCTCAAGTCTAAATCATTTGTGGTCAGGTATATGATTTTCTTATATCCATTCAGTTGTTTGACACTGCTTTGTATTTTTCCTGGCTATCTTAGGTTCGAGTTCTGTTTGAGTTCTTTGTTGTATAATTGATGTTTGGAAATGTTCTATTACTGGTAGAGATTGGACTTGAATAGAGGAAATGAATATGGTCATTCAAAAGAAAAAAGTCATACAGAGATTCATGTAATTAACCCAACTTATCTGGGATTCAGACATAGCTGTTTAATTGATTGATAGATATTGGACATGTGAATTTCTGCAATATATATAAAATTGAATTACAGAAAATTTGATTGAATTGAATGTAATTAAATATGCTTTAAGGCTTTGAGGATCATAAGCTAGCAAACCATCTACTCCTTTGTGCAGAAACTGCAGATACTTCAGTCTTGTCCTCTTTGTACCCAAAATAGAGAAAAAGAAAAAAGAAACAGAAGTTATGTCAGTGCATACAATATGATTAGACTCTACTGTTTTATGAATAAATGAATCTTTCAGTTGCTCCACTGTTCCAAACTAATTGGGGTAAGCGATCTGATATGTACCCTCTATGTACTTGCAACTCTATTCATTTGGATACACATTAATGTATTTTCAAAGATAATTTATGGATTACTGGAAATCTAATGTTCTCTAAGTCTACACTTACCCATACTCTCAACACACACATCACTAGCAAAACTGAATAGATCCCTGGTGGATATGAATAGATAAGTATATATATGTGTGTGTGTGTGAATACTCTTTTGAAGGATAGGCTTTTGAAAGCTCATATAACTTAATTTTTTCATTATTTTCTTTTTGAATAATTAAATGCAGTGCTTAAGATACTTCTCTGGGTGCATTCTTGAATGGGTAATCAGTTTGCTCACTGTTAAGTTCGCGATCAAAAGCTCCTGACTGTAGAAGTGTCCTTGTTTTCAAGTTTGCTCTTTTCATGCATGACATGCCTAAACTGCATTTTTTATTGTGCAGCTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAGGTGTTTTGAGGATTGATTTGTATAGTTATCTTGTTTAGTTTCTTGATAGGATTTCATCGTCATTTAAATTATTAACTTCTTGATTGCATTGGAGAACCTTATAGGTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTGGTGAGTATGAACATACTCTTAGTGATGTCAGTGCATCTTATTAGAAATTTAGTTCATAATCCACGAGAAGTCATTTCTTGACACACAACTAAATAAGCTGTACATTTTAGACTACATTTTGGAGTTGGAAACCATATTTGACACCTACACAAATGCCCACATACCATGTCAAAACTATTTTTCAAAATAATGGTAGGAGTTGGAAACCATATTTGACAACTACACACCCACTTATACTTCTTGATTTATTTTATCCACACCGTTTTTGTCTACCAATTGGGAATGCTGTTTACCAGCTAAACATCTTCCAGAGCAAATCCCCGATTTTCTGTTCTTTCTTGTTCCTTTTTCTCCCTTCTTGGGGTGGGTGCAGGGAAATTTTTTCTGGTATGGAGTGTAATTTATTAAATTAATATATTCTCCAGTTTTGTTTGGTATTTTTGAATTCTGTTACCTGCTTGACCCTGCATTCATGTAGGAACATGCATCTTTATTTTTCAAGGGGTTAAAAAAGAAATGTATAATGTCTGTCTTGTACTTTTTGTGTTATGGACCCTCTCAATCTTTCATAGTATTACAGTTTGCTTGTAATGAACACAGTGCCTTTTTAGCTACAGAGATAGATGATTACTGATGATACTGTCTAAGAAAGGGACAGAGAAATTTCTTGTATGAATTTGAGAGGACACCATTAAGAGGGGTTTTTTTCTGTATATTCAAATCATGTTTTATCCTCCCATAAAATTTAATTCTACTGTCAATCATGTGTCGTAATTGAAATGACAGCAATCAGTTAGGTTTATTGATGTTGTTGGCTGGATATAGCTCCAGATAAGTATTGCAAACATACATCTGTTTGCAACTGAAGGCATTTCAGTGAAGTTCATGGATGAATATAGACCTTATGTGTTTGTTTTATCTTGGATGTTTTGGGGTGGTGGAGCACATCTTTAAGATGAGATTAGAACATGGTTGCTAAGGTCCTGAGAAGGATGAGGGAACCTTGAGACTAGTAAAGGTATGGGTTGCTCAATTTTTTTTTTATGACAAGGGAAACCCGCAGCCGCTACCTTTTGGGTGCACACAGGGTGAAACCCCCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGAGGACGAGCTCGACCCAAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGGGTTGCTCAGATTGTTCCAAGGGTTTATGTGTTCTAACCTGTTCTATGTTTCCTGTTGACAATCCATGGATGCCTCTATTACCTTTGATACAAACTAAAGTGGCAGGTACATAAAACTTGAATTAGAAGGAACACTAACTTTTTGTGAAAAATGATGCAGTATTGCAGATGTCAAAGCCATGAGATAGTAATACTTATTAAAGAGTTGAGTGCATTTCTGCATTGTATATTATGTTGCCATTTTGTCTATTTCTTCTCAAGAGCTTATTCATTCTTCAAGTCAAAAGGTCTTAGTTTAATCTCCTTACTTGAATCTCATGGTTATTATTTTGATGATTAGATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTT</genome_strand>
        <mrna_strand>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAG........................................................................................................GTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344312" ref_strand="+" ref_description="SGN-E344312 [cTOF-16-O12]">
      <seq>attttgatagaataagttagtcattaacattttacattgactgcaccattattcatattggagtattcgtggaactatcttcttttttcttatgcctttaaaaataataattctaatgtacttcattctaacctagctaatatattttagacattttttatctagacttgctcctcctctcggaagaggaacataattaatgtactataacactttgaccataacctaacctagccaatattttaagacatactctgctaagtctttatttagatttgctctttctcttgaatgagggacatagttaatgctctaaaacactttgacggtagcattgctactataacattacttctgccttctggcacagttctgcacccaacttagctgtttatatcatggtatttctcactatttataacataagcagaacatgtcgactgagaagagtccgcttgagcaaacgtcacctgctgttgcatcatcatgccgaaaaaagaagtctgaaagtgccacatttttggaggatgtgaaggatcatattgatgagtttatacatgcctcaatggatgaacacgcatcttgctttaagaagaccatcaataagatgtttgggatgtctaaaattgtcgctgaaagaaatgctgaagcaaaaggagttgagagctcacttcctctccaactgttgtatctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="60929" stop="62315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61229" g_stop="61835" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61836" i_stop="61925" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61926" g_stop="62015" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="696" r_length="89" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E344312" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61229" e_stop="61835"/>
          <exon e_start="61926" e_stop="62015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGATAGAATAAGTTAGTCATTAACATTTTACATTGACTGCACCATTATTCATATTGGAGTATTCGTGGAACTATCTTCTTTTTTCTTATGCCTTTAAAAATAATAATTCTAATGTACTTCATTCTAACCTAGCTAATATATTTTAGACATTTTTTATCTAGACTTGCTCCTCCTCTCGGAAGAGGAACATAATTAATGTACTATAACACTTTGACCATAACCTAACCTAGCCAATATTTTAAGACATACTCTGCTAAGTCTTTATTTAGATTTGCTCTTTCTCTTGAATGAGGGACATAGTTAATGCTCTAAAACACTTTGACGGTAGCATTGCTACTATAACATTACTTCTGCCTTCTGGCACAGTTCTGCACCCAACTTAGCTGTTTATATCATGGTATTTCTCACTATTTATAACATAAGCAGAACATGTCGACTGAGAAGAGTCCGCTTGAGCAAACGTCACCTGCTGTTGCATCATCATGCCGAAAAAAGAAGTCTGAAAGTGCCACATTTTTGGAGGATGTGAAGGATCATATTGATGAGTTTATACATGCCTCAATGGATGAACACGCATCTTGCTTTAAGAAGACCATCAATAAGGTTAGTTCCAAATCAAAATAGCATTATTGATCGTTCCTTTCTTAATGAGGCATTATGATTTATTCTTAACAGCTGTGGTTATGCCTTCAGATGTTTGGGATGTCTAAAATTGTCGCTGAAAGAAATGCTGAAGCAAAGGAGGTTGAGAGCTCACTTCCTCTCCAAACTGTTGTATCTGAG</genome_strand>
        <mrna_strand>ATTTTGATAGAATAAGTTAGTCATTAACATTTTACATTGACTGCACCATTATTCATATTGGAGTATTCGTGGAACTATCTTCTTTTTTCTTATGCCTTTAAAAATAATAATTCTAATGTACTTCATTCTAACCTAGCTAATATATTTTAGACATTTTTTATCTAGACTTGCTCCTCCTCTCGGAAGAGGAACATAATTAATGTACTATAACACTTTGACCATAACCTAACCTAGCCAATATTTTAAGACATACTCTGCTAAGTCTTTATTTAGATTTGCTCTTTCTCTTGAATGAGGGACATAGTTAATGCTCTAAAACACTTTGACGGTAGCATTGCTACTATAACATTACTTCTGCCTTCTGGCACAGTTCTGCACCCAACTTAGCTGTTTATATCATGGTATTTCTCACTATTTATAACATAAGCAGAACATGTCGACTGAGAAGAGTCCGCTTGAGCAAACGTCACCTGCTGTTGCATCATCATGCCGAAAAAAGAAGTCTGAAAGTGCCACATTTTTGGAGGATGTGAAGGATCATATTGATGAGTTTATACATGCCTCAATGGATGAACACGCATCTTGCTTTAAGAAGACCATCAATAAG..........................................................................................ATGTTTGGGATGTCTAAAATTGTCGCTGAAAGAAATGCTGAAGCAAAAGGAGTTGAGAGCTCACTTCCTCTCC-AACTGTTGTATCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393922" ref_strand="+" ref_description="SGN-E393922 [TUS-14-K12](-)">
      <seq>ttattcctgttcttgttgagttaagggacctggtccgttgactgatcgtggacgcatacatcttatcagggcaccattacaagcgtattttgaaaactccaccatccaagcctggatcaaaccctcggatgatatctctaaatacgcatgtaactagagaacaagcatagagtatggtccaaagctaaagctagttagatgtcgacagaaaaggaagagcacaaaccataaaacaaaggatccaacaatcactatgaggattcatcaggttattgtaatgcccattagttttttttttaaaaaaaaaatctagacatgtctaatgtgtggcaaaaccaacagacataaaaagcagcataacttcttaggcaagagcctctcaaattgttgtacccatttattttgtttatctagacatgtctaatgtgtggtaaaacagacagatgtaaaaagcagcaagacttcttaggcaagagcatctcaaattgttgtgcccatttattttgtttatctagacatgtctaatgtttggtaaaaccaacagatgtaaaaagcagcacaacttctcaggcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="63028" stop="61853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62728" g_stop="62146" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E393922" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62728" e_stop="62146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCCTGTTCTTGTTGAGTTAAGGGACCTGGTCCGTTGACTGATCGTGGACGCATACATCTTATCAGGGCACCATTACAAGCGTATTTTGAAAACTCCACCATCCAAGCCTGGATCAAACCCTCGGATGATATCTCTAAATACGCATGTAACTAGAGAACAAGCATAGAGTATGGTCCAAAGCTAAAGCTAGTTAGATGTCGACAGAAAAGGAAGAGCACAAACCATAAAACAAAGGATCCAACAATCACTATGAGGATTCATCAGGTTATTGTAATGCCCATTAGTTTTTTTTTTAAAAAAAAAATCTAGACATGTCTAATGTGTGGCAAAACCAACAGACATAAAAAGCAGCATAACTTCTTAGGCAAGAGCCTCTCAAATTGTTGTACCCATTTATTTTGTTTATCTAGACATGTCTAATGTGTGGTAAAACAGACAGATGTAAAAAGCAGCAAGACTTCTTAGGCAAGAGCATCTCAAATTGTTGTGCCCATTTATTTTGTTTATCTAGACATGTCTAATGTTTGGTAAAACCAACAGATGTAAAAAGCAGCACAACTTCTCAGGCAAGAGCATCTC</genome_strand>
        <mrna_strand>TTATTCCTGTTCTTGTTGAGTTAAGGGACCTGGTCCGTTGACTGATCGTGGACGCATACATCTTATCAGGGCACCATTACAAGCGTATTTTGAAAACTCCACCATCCAAGCCTGGATCAAACCCTCGGATGATATCTCTAAATACGCATGTAACTAGAGAACAAGCATAGAGTATGGTCCAAAGCTAAAGCTAGTTAGATGTCGACAGAAAAGGAAGAGCACAAACCATAAAACAAAGGATCCAACAATCACTATGAGGATTCATCAGGTTATTGTAATGCCCATTAGTTTTTTTTTTAAAAAAAAAATCTAGACATGTCTAATGTGTGGCAAAACCAACAGACATAAAAAGCAGCATAACTTCTTAGGCAAGAGCCTCTCAAATTGTTGTACCCATTTATTTTGTTTATCTAGACATGTCTAATGTGTGGTAAAACAGACAGATGTAAAAAGCAGCAAGACTTCTTAGGCAAGAGCATCTCAAATTGTTGTGCCCATTTATTTTGTTTATCTAGACATGTCTAATGTTTGGTAAAACCAACAGATGTAAAAAGCAGCACAACTTCTCAGGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398229" ref_strand="+" ref_description="SGN-E398229 [TUS-14-K12]">
      <seq>tttttgcgacttgaaaattctcaagtatacaagcaaagactaccttggtgaaatattctccagcaagcacaacaaggtcccgaggagctgcaagcgtcagagtgtgtcttaagagttatactttcgtggttatattataaatttgttcctaatttataaaggattcagatagtttgtttttggtttgtaaaagtataaatcagttaaccctaactgatttagtgggcaacattgttttgttgcttagtcaaattctaagtcatctaggtgggatggtttagtggtcagtgttgtacctgcttagtcaaattctaaatcatctagagttaggtggtttagcgagcgatggggtctccgtttagcaaaatctaagttatctaggggtaatagcttagtgggcagtgttgtatctgcttaggcttttcaagtaatagagttattacatggtcatatgatcaataacttcttctcacattggttgtaactgggttcacttttgcttaaaaaagattagagaaacagttgaaaatcctgtgcaacaggtcgtggttttactcccttgagcaaggaggtttccacgtaaactgcttgtgtcgtcttctgttcatcgtttactctttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="63646" stop="62423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63346" g_stop="62723" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E398229" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63346" e_stop="62723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGATCAATAACTTCTTCTCACATTGGTTGTAACTGGGTTCACTTTTGCTTAAGAAAGATTAGAGAAACAGTTGAAAATCCTGTGCAACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAACTGCTTGTGTCGTCTTCTGTTCATCGTTTACTCTTTATTC</genome_strand>
        <mrna_strand>TTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGATCAATAACTTCTTCTCACATTGGTTGTAACTGGGTTCACTTTTGCTTAAAAAAGATTAGAGAAACAGTTGAAAATCCTGTGCAACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAACTGCTTGTGTCGTCTTCTGTTCATCGTTTACTCTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202132" ref_strand="+" ref_description="SGN-E202132 [cLEC-7-C14]">
      <seq>ttttgcgacttgaaaattctcaagtatacaagcaaagactaccttggtgaaatattctccagcaagcacaacaaggtcccgaggagctgcaagcgtcagagtgtgtcttaagagttatactttcgtggttatattataaatttgttcctaatttataaaggattcagatagtttgtttttggtttgtaaaagtataaatcagttaaccctaactgatttagtgggcaacattgttttgttgcttagtcaaattctaagtcatctaggtgggatggtttagtggtcagtgttgtacctgcttagtcaaattctaaatcatctagagttaggtggtttagcgagcgatggggtctccgtttagcaaaatctaagttatctaggggtaatagcttagtgggcagtgttgtatctgcttaggcttttcaagtaatagagttattacatggtcatatgaacaataactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="63645" stop="62582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63345" g_stop="62882" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E202132" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63345" e_stop="62882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGATCAATAACTT</genome_strand>
        <mrna_strand>TTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGAACAATAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206218" ref_strand="+" ref_description="SGN-E206218 [cLEC-29-H5]">
      <seq>agctcaagcatcaaagaactcagcaagggacctgatcccgaaaagtctgcatacgaaggacgtaaagatagctgtcaaaaagctgtcaattctgatgtggtaggtgcacaacttttcatgacagcagactcttagccgatagcttcgtcccaagtgtttgtgtacatggtgatatagtctcttatcctaaaacacaaacacaagattttgacaaacaaaaactcacaagcttaaaaagaaaaagtcatcttcaaggaagaataataatcatactcaacaaaaagatttgatgaagtgttgaagcatctttgttgagtttgagttttgtgtctatcattttataggtttttgcgacttgaaaattctcaagtatacaagcaaagactaccttggtgaaatattctccagcaagcacaacaaggtcccgaggagctgcaagcgtcagagtgtgtcttaagagttatactttcgtggttatattataaatttgttcctaatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="63991" stop="62890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63691" g_stop="63190" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E206218" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63691" e_stop="63190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGGGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTAT</genome_strand>
        <mrna_strand>AGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGTGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206714" ref_strand="+" ref_description="SGN-E206714 [cLEC-31-G6]">
      <seq>agctcaagcatcaaagaactcagcaagggacctgatcccgaaaagtctgcatacgaaggacgtaaagatagctgtcaaaaagctgtcaattctgatgtggtaggtgcacaacttttcatgacagcagactcttagccgatagcttcgtcccaagtgtttgtgtacatggtgatatagtctcttatcctaaaacacaaacacaagattttgacaaacaaaaactcacaagcttaaaaagaaaaagtcatcttcaaggaagaataataatcatactcaacaaaaagatttgatgaagtgttgaagcatctttgttgagtttgagttttgtgtctatcattttataggtttttgcgacttgaaaattctcaagtatacaagcaaagactaccttggtgaaatattctccagcaagcacaacaaggtcccgaggagctgcaagcgtcagagtgtgtcttaagagttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="63991" stop="62928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63691" g_stop="63228" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E206714" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63691" e_stop="63228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGGGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTAT</genome_strand>
        <mrna_strand>AGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGTGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394284" ref_strand="+" ref_description="SGN-E394284 [TUS-14-O15]">
      <seq>cctcaaccaatttcattttctatctcattcaggcatttcaacaaacacttttttgcgaacacacacacttcaattaactacatttgtaagattgtcaatattatggctagggcacaacaaagatatcgaggagttcgacagagacattggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattaggaaagttgaagatcaagtacttgagggtataccacaatttgtcaagccacttgaagatgatcacattgaacaaatgattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="69315" stop="71000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69615" g_stop="69799" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69800" i_stop="70235" i_length="436">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70236" g_stop="70700" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="650" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E394284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69615" e_stop="69799"/>
          <exon e_start="70236" e_stop="70700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGA</genome_strand>
        <mrna_strand>CCTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394928" ref_strand="+" ref_description="SGN-E394928 [TUS-43-I13]">
      <seq>cctcatccaatttcattttctatctcattcaggcatttcaacaaacacttttttgcgaacacacacacttcaattaactacatttgtaagattgtcaatattatggctagggcacaacaaagatatcgaggagttcgacagagacattggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="69315" stop="70920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69615" g_stop="69799" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69800" i_stop="70235" i_length="436">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70236" g_stop="70620" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="570" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E394928" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69615" e_stop="69799"/>
          <exon e_start="70236" e_stop="70620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGG</genome_strand>
        <mrna_strand>CCTCATCCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202114" ref_strand="+" ref_description="SGN-E202114 [cLEC-7-M1]">
      <seq>ctcaaccaatttcattttctatctcattcaggcatttcaacaaacacttttttgcgaacacacacacttcaattaactacatttgtaagattgtcaatattatggctagggcacaacaaagatatcgaggagttcgacagagacctttggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="69316" stop="70919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69616" g_stop="69799" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69800" i_stop="70235" i_length="436">
            <donor d_prob="0.906" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70236" g_stop="70619" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="569" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E202114" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69616" e_stop="69799"/>
          <exon e_start="70236" e_stop="70619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGA-CATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAG</genome_strand>
        <mrna_strand>CTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACCTTTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203950" ref_strand="+" ref_description="SGN-E203950 [cLEC-22-K23]">
      <seq>ctcaaccaatttcattttctatctcattcaagcatttcaacaaacacttttttgcgaacacacacacttcaattaactacatttgtaagattgtcaatattatggctagggcacaacaaagatatcgaggagttcgacagagacattggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="69316" stop="70875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69616" g_stop="69799" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69800" i_stop="70235" i_length="436">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70236" g_stop="70575" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="524" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E203950" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69616" e_stop="69799"/>
          <exon e_start="70236" e_stop="70575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCAT</genome_strand>
        <mrna_strand>CTCAACCAATTTCATTTTCTATCTCATTCAAGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214492" ref_strand="+" ref_description="SGN-E214492 [cLEC-77-H14]">
      <seq>aacaaacacttttttgcgaacacacacacttcaattaactacatttgtaagattgtcaatattatggctagggcacaacaaagatatcgaggagttcgacagagacattggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattaggaaagttgaagatcaagtacttgagggtataccacaatttgtcaagccacttgaagatgatcacattgaacaaatgattgaagaattgttggattatggatccattgagctttgctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="69354" stop="71038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69654" g_stop="69799" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69800" i_stop="70235" i_length="436">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70236" g_stop="70738" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="649" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E214492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69654" e_stop="69799"/>
          <exon e_start="70236" e_stop="70738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTA</genome_strand>
        <mrna_strand>AACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747006" ref_strand="+" ref_description="SGN-E747006 [GI|18650661]">
      <seq>tacttttttgcgaacacacacacttcaattaactacatttgtaagattgtcaatattatggctagggcacaacaaagatatcgaggagttcgacagagacattggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattaggaaagttgaagatcaagtacttgagggtataccacaatttgtcaagccacttgaagatgatcacattgaacaaatgattgaagaattgttggattatggatccattgagctttgctctaatgttgttccttctcaccaaatccagtgagcttgctcgtaaatcgactattgcctaatacttgctacatttgatcagtgcaggtattagataactcttctactgatgttctctctcagtaattgtctctttttgggtcctacattgttctgtactagaaagatactcattttgctaatttaaccccatttgtatagccgttcccgatttgtttgggactgaagcttagttattgttgtattaagtcttttaagtagtctccctctgtttaaaatctatgtatcgttagtaggtctaggcattttctctttttggttcctagagtttttactctaagagaaccttctactagttgtaaaattccattataatataatcttttctctcttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="69361" stop="71431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69660" g_stop="69799" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69800" i_stop="70235" i_length="436">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70236" g_stop="71136" g_length="901"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="1041" r_length="901" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E747006" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1041</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69660" e_stop="69799"/>
          <exon e_start="70236" e_stop="71136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAGAGCTCT</genome_strand>
        <mrna_strand>TACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337331" ref_strand="+" ref_description="SGN-E337331 [cTOE-7-P22]">
      <seq>agggcacaacaaagatatcgaggagttcgacagagacattggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattaggaaagttgaagatcaagtacttgagggtataccacaatttgtcaagccacttgaagatgatcacattgaacaaatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="69423" stop="70999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69723" g_stop="69799" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69800" i_stop="70235" i_length="436">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70236" g_stop="70699" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="541" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E337331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69723" e_stop="69799"/>
          <exon e_start="70236" e_stop="70699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTG</genome_strand>
        <mrna_strand>AGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418322" ref_strand="+" ref_description="SGN-E418322 [STM-27-C22]">
      <seq>tggggttcttgggtctccgaaattcgccatccattaatgaaaaacagactttggttaggcacatttgaagacagcagaagatgcagcaagagcatatgatgaagcagcaaggcttatgtgtggtccaagaactagaaccaatttcccctaccaacccaaacatgccacaaacatcttcctctaagcttctctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaaccaaaacctcaccacaagaacaaaaaagagcaaaaaatgcaaccaatgttcaaaaagtgttattaattcctataaataaacaacaatgttggtaccaatgcatagtacaattgactatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="69462" stop="70869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69762" g_stop="69799" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69800" i_stop="70235" i_length="436">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70236" g_stop="70563" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="363" r_length="325" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E418322" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69762" e_stop="69799"/>
          <exon e_start="70236" e_stop="70563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTG-AGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATA-CAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATG-ACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACT</genome_strand>
        <mrna_strand>TGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAACAGACTTTGGTTAGGCACATTTGAAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTTATGTGTGGTCCAAGAACTAGAACCAATTTCCCCTACCAACCCAAACATGCCACAAACATCTTCCTCTAAGCTTCTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGAACCAAAACCTCACCACAAGAACAAAAAAGAGCAAAAAATGCAACCAATGTTCAA-AAAGTGTTATTAATTCCTAT-AAAT-AAACAAC-AATGTTGGTACCAATG-CAT-AGTACAATTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211671" ref_strand="+" ref_description="SGN-E211671 [cLEC-67-H4]">
      <seq>aaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattaggaaagttgaagatcaagtacttgagggtataccacaatttgtcaagccacttgaagatgatcacattgaacaaatgattgaagaattgttggattatggatccattgagctttgctctaatgttgttccttctcaccaaatccagtgagcttgctcgtaaatcgactattgcctaatacttgctacatttgatcagtgcaggtattagataactcttctactgatgttctctctcagnaattgtctctttttgggtcctacattgttctgtactagaaagatactcattttgctaatttaaccccatttgtatagccgttcccgatttgtttgggactgaagcttagttattgttgtattaagtcttttaagtagtctccctctgttttaaatctatgtatcgttagtaggtctaggcattttctctttttggttcctagagtttttactctaagagaccttctactagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="70145" stop="71391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70445" g_stop="71091" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E211671" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70445" e_stop="71091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTT</genome_strand>
        <mrna_strand>AAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGNAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTTAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAG-ACCTTCTACTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393830" ref_strand="+" ref_description="SGN-E393830 [TUS-14-O15](-)">
      <seq>aggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattaggaaagttgaagatcaagtacttgagggtataccacaatttgtcaagccacttgaagatgatcacattgaacaaatgattgaagaattgttggattatggatccattgagctttgctctaatgttgttccttctcaccaaatccagtgagcttgctcgtaaatcgactattgcctaatacttgctacatttgatcagtgcaggtattagataactcttctactgatgttctctctcagtaattgtctctttttgggtcctacattgttctgtactagaaagatactcattttgctaatttaaccccatttgtatagccgttcccgatttgtttgggacttaagcttagttattgttgtattaagtcttttaagtagtctccctctgtttaaaatctatgtatcgttagtaggtctaggcattttctctttttggttcctagagtttttactctaagagaaccttctactagttgtaaaattccattataatataatcttttctctcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="70158" stop="71431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70458" g_stop="71131" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E393830" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70458" e_stop="71131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAGA</genome_strand>
        <mrna_strand>AGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTTAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394927" ref_strand="+" ref_description="SGN-E394927 [TUS-43-I13](-)">
      <seq>aatttaaccccatttgtatacccgttcccgatttgtttgggacttaagcttagttattgttgtattaagtcttttaagtagtctccctctgtttaaaatctatgtatcgttagtaggtctaggcattttctctttttggttcctagagtttttactctaagaaaaccttctactagttgtaaaattccattataatataatctattgtctcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="70614" stop="71431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70914" g_stop="71131" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E394927" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70914" e_stop="71131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAGA</genome_strand>
        <mrna_strand>AATTTAACCCCATTTGTATACCCGTTCCCGATTTGTTTGGGACTTAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAAAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTATTGTCTCTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547123" ref_strand="+" ref_description="SGN-E547123 [TUS-70-N12](-)">
      <seq>cttgagcggaaagtatgttcttgtggtagatttcaactagatgagataccttgttcacatgcaatcgctgtattgaaaaaaaagaatgtcaccgatatgaatccgtattgctctgattattacaagcctgatgcattggcaaaaacatatgaaatttcaatggtaccaatgccagataaggaagattggtcagatcctaataatgtggtagctgaaactgtgtatccacctagatacagaagatcatctggacgaccaagaaaaagaagaagaaagaatgcagatgaaaagatttcggtgaacacaaactgttgtggacaatgtggacaagaaggaaacaacggaagaacttgtactttctacccaaaagagaagtgaattagtcgtaatgtttttatgatatcaagaataatttataacgtaaatattttaatgaatttcagttttcattacagttgaaaattgaacactttttgtttagataaataaacttaataacatgtgataattaaattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="88643" stop="89760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88942" g_stop="89460" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="529"/>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E547123" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88942" e_stop="89460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGCGGAAAGTATGTTGTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATAGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTGCCAATGCCAGATAAGAAAGATTGGTCAGATCCTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAATTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTTGTCGTAATGTTTCTATGATATAAAGAATAATTTATCACGTAAACATTTAAATGAATTTCAGTTTTAATTACGACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACGTACAAACATGTGGTAATTACATTTGAA</genome_strand>
        <mrna_strand>CTTGAGCGGAAAGTATGTTCTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATCGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCATTGGCAAAAACATATGAAATTTCAATGGTACCAATGCCAGATAAGGAAGATTGGTCAGATCCTAATAATGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGAAACAACGGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCGTAATGTTTTTATGATATCAAGAATAATTTATAACGTAAATATTTTAATGAATTTCAGTTTTCATTACAGTTGAAAATTGAACACTTTTTGTTTAGATAAATAAACTTAATAACATGTGATAATTA-AATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245630" ref_strand="+" ref_description="SGN-E245630 [cLEF-43-P3]">
      <seq>tcgtgccgattttgataaaagcaaatcactcccagctgatgcaatctattagcaaagagaacatcaattttcaggctgatacaagcacatttcagtctgacaaacaaacatctcagcaaataccggttgatctcgatgatatgggtggtgtagctgaggatggtggtggtttttctggtaaaaatggtgagcatcatatcgtcgacgatgcaggggatgtcgatgtggatggtgttggtgttgccgtaaatgagggtgaaccaatagtcactgatccaaaggatggtgacgcacatcagtcgcaccaagatttaaatgaacatatcatggaccaagccgttgacgacaatgttcatcacaacatccctcatatgttgcccgaaaaaacaacaacagattcatcggattcttcaacttcaacaacaatatcgccatcaactcaagcagcaatagaagcacttatcaaagatttgggtaaagatgctaccaatgctagaccattatattcttacgatccaaagaatataactagcagccagtacttgttgaccgacagtcaattacccactgaaattccaataacggagattgctgttaaaactgatgcagtcactcctgcgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="93142" stop="91644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92850" g_stop="92570" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92569" i_stop="92369" i_length="201">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92368" g_stop="92246" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="404" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92245" i_stop="92163" i_length="83">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92162" g_stop="91944" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="623" r_length="219" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E245630" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92850" e_stop="92570"/>
          <exon e_start="92368" e_stop="92246"/>
          <exon e_start="92162" e_stop="91944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCTGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAGGTAATGTTTATGATACAGTGGGTATGTTGTGTATCATGCACATATAGTCAATGCTTTGTATCATGATCATTTTTTTCTCATTTTATATTCTGTCATGTATCATTCATATTTAATCAATACTATGTATCATGTGATTGTTATCAATGTTACGTATCAGCACAAATTATATTAACAGTTTTTATTTCAAAACTGCATATTCAGGATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAACCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAACAGATTCATCGGTACATTTTTCAATTTTGATTTATGACACACAATTTCATTACACACAAATTTATTCTAAAAATCATTACATCATATTATACAGGATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGGGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</genome_strand>
        <mrna_strand>TCGTGCCGATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAG.........................................................................................................................................................................................................GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGCCGTTGACGACAATGTTCATCACAACATCCCTCATATGTTGCCCGAAAAAACAACAACAGATTCATCG...................................................................................GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCACTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGAGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543213" ref_strand="+" ref_description="SGN-E543213 [TUS-64-O16](-)">
      <seq>aatttggtatagatgattttgcattattaacaggacttaaggtcagaggaaataccaatgatttcaaatacccagaacaaactaattgtatgctttttaaaaagtatttccctggtgcagtcaatagtgttacaaagcatcaactagttcaaaggtttaagatgggtaattgggagagcaatcaggatgcactccaaatgtctatactgttctttattcatacatttgtattagcttctattgataacacagcgatatctattgtcgactttctaatggttgaagatggtagatatcaacattttccttggggtcagctatcattttccaaactaattggttcacttagacaggattttgacgttagtaaaaagttgtaccgattatatgggatgccatatgcactaaatgtttggatatacgaatgtgcatccaatttaaattcagaaatagttgtgagagaacgcaatgtcatcccaagaatatgcaattggagagttgtgtctgaaaaggcaaagtttgaaatgcttatgtccaccattttccaaaagttagaatgcatgttcaaacattgtcccaacagcagaggaaattgaagcttttgatattgctcaagttgaacatgctcattctacatcaataccattagtacaaccaaacgagcaagatgatttagatgatttctccacaagaccgccagaacagttattgaggacatattctagagtgtctgatacatctcctccaccaccgccaaaaaagaaaaaaaaaaactcgagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="94411" stop="32218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94111" g_stop="93561" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93560" i_stop="93453" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93452" g_stop="93221" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="782" r_length="231" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E543213" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94111" e_stop="93561"/>
          <exon e_start="93452" e_stop="93221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTTCTATTGATAACAGAGCGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGCTGTGAGAGAACGCAATGTCATCCCAAGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTCCAAAAGGTAAAATTTTATTTTTGTATATGGAATATCGTTATTTATGTCTTTGTGATACATTATGAATTATTACTGTATCTAACAGTTAAATTATCTTATGTGCTTGTGATACATTTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCACAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTAGATGATTTCTCCACAAAACCGCCAGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAAGAAGAAAAAAATCGATTATTCAAA</genome_strand>
        <mrna_strand>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTTCTATTGATAACACAGCGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGTTGTGAGAGAACGCAATGTCATCCCAAGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTCCAAAAG............................................................................................................TTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCTCAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTAGATGATTTCTCCACAAGACCGCCAGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAA-AAGAAAAAAAAAAACTCGAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539930" ref_strand="+" ref_description="SGN-E539930 [TUS-59-P4](-)">
      <seq>ggatccgttcaagttacagagccaagaaagagcatgcttcattgcttgaagattttagagagttcgaccggaccaggttagatctggaagatggtagtgggtctcatgaccaagcactccttaacgaacgtgctactctccataggactactggacagatggatggtgtgatttctcaagctcaagaaacaataaagacacttatgtttcaaagatcaacatttggtggcattaattcaaaactcagcaatatcagcagtcgcctcccaacggttaaccatattctttcagcaataaagaagaaaaagtctatggatacgatcattctttcattagttgcctctgtatgcatgtttctcattttggtttactggatgacgaaatgagacagtaattaattggactcctgatggagctttgagcaccatctttgcttgtttgtatctttttgtatattcaccagtgaattttgtgactcttcatttttatacatgtaagaaggtatcttgaattggttttgatgcacgcggttgctatgccaatccaagtatcaacatgatttagaatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="107515" stop="104576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107215" g_stop="107058" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107057" i_stop="106452" i_length="606">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106451" g_stop="106338" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="272" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106337" i_stop="105172" i_length="1166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105171" g_stop="104875" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="569" r_length="297" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="570" polyA_stop="583"/>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E539930" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107215" e_stop="107058"/>
          <exon e_start="106451" e_stop="106338"/>
          <exon e_start="105171" e_stop="104875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAGGTAAAAAATATAAAGTTCCTTTGATATATTGATGTTGGTTAACTTTCCTTGTCATGTGAAGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACGGTGAGTAAACTATGTTATAAGCACCCTATTTTTTTCAATTCAATTTCTAGAGCTGAGCTGAAGCAGGAGAGCTTAAATTTTCATTCTAAATAGTGATGACATTTGCCACAAGCTGCTTTATTGATCTGATCAAGATGAGTCATCTCTTTACTGGTTGTTTGAGTATTTTATCCTTCCAAGTGTCCTCAAGGGGATTGCTTGGTATTGAGGCTTAGGAGCACCAACCTGGAGATTCAGTTTGGATCCCAGGCAGAATACCGAATACATTTTGGTGAACAGATTTACTTGAGTAATAGGTCCCCGCTTATTAATTGGAGTTACTTGCAAGTTAATCCAGACATCACTGCCATAAAGAAAAAAGAGGGAAGGTTCAAAGTTATCCTTGTACTATGTGTAATTTCTTGCACTTTGTTAGACTTCTGGTCCATTTATACCCTTCTCGATTAACTTATCGTTTCATATTTTCCATCACCGTTAATGTAGCTTCAAAGTGAATTTGATGGACTCTAATACGTGTTCTACACGTCTAAATGCTTTGAGAAAAATCATGTCCAAATTTAACCCTCGACTTTTGACTATGGTTGAAAAGTTGACCCTCAGGTTGGAGTTCTGGTAGAGGTTAAGAGCAAAATAAGACTTTTTCCTCTGTGGGCTGATATAAGACAGTTTAATAGAGGACACACTTGCTCAATGGTTAGTACATGGGCAAATTTGACCATTTTCCCAAGGTAAAATAAAATTAGATAATCAAAAAGGAATACGATCGTCAGTGTAAAGTACTTTGAGATCTTGTATTTTTGTATGTTACCTTTCTCAAAAAGAAAATCTTGTATTTTTGTGCTGTAGAGGTGTCTGTAGACTTCTGCAAGTTCTAGATTATTTGAGAGAAAAGTGACCCTGTAAGTGGGATACTTTTTCGCCTTTTCTTTTAGAAACACTTCTTTAGATCTTTCTTTTATTATTATAGAAGTAGAAGCTTCTTTTAATCATAGAAGATCTAGTGAAGTACCAAAGTTAAACAGGGCCTGCTCCCAGGTGGGGATGTCTGCCCCCTCTCTGTTATAAAGAGTGCCAGTGAGATCACATTGTTACATATTTGTGGAAAACTTCTGTTACATATGGGATCTATATCCTTTTTTCTTATTTGCTCTTTCTCAATTTTGCAGGTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGAATCC</genome_strand>
        <mrna_strand>GGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539933" ref_strand="+" ref_description="SGN-E539933 [TUS-59-P4]">
      <seq>cttcaacaagtaaattcacaaatgcaagcatgggtttcatcgggaggatctgagatcttctctcatacactgactcgccatcaagaaattcttcaagatctttttcaggagtttaaccggatccgttcaagttacagagccaagaaagagcatgcttcattgcttgaagattttagagagttcgaccggaccaggttagatctggaagatggtagtgggtctcatgaccaagcactccttaacgaacgtgctactctccataggactactggacagatggatggtgtgatttctcaagctcaagaaacaataaagacacttatgtttcaaagatcaacatttggtggcattaattcaaaactcagcaatatcagcagtcgcctcccaacggttaaccatattctttcagcaataaagaagaaaaagtctatggatacgatcattctttcattagttgcctctgtatgcatgtttctcattttggtttactggatgacgaaatgagacagtaattaattggactcctgatggagctttgagcaccatctttgcttgtttgtatctttttgtatattcaccagtgaattttgtgactcttcatttttatacatgtaagaaggtatcttgaattggttttgatgcacgcggttgctatgccaatccaagtatcaacatgatttagaaatcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="108817" stop="104576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108517" g_stop="108410" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108409" i_stop="107226" i_length="1184">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107225" g_stop="107058" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="276" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107057" i_stop="106452" i_length="606">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106451" g_stop="106338" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="390" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106337" i_stop="105172" i_length="1166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105171" g_stop="104879" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="683" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="700"/>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E539933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108517" e_stop="108410"/>
          <exon e_start="107225" e_stop="107058"/>
          <exon e_start="106451" e_stop="106338"/>
          <exon e_start="105171" e_stop="104879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAGGTTCTTTAAATTATTTTTTCCCGCTTGATCTTGACGCAACTCTATTTTATACAGATTCTGTAACTACAAGCCATGGATATTTTGTAGTAATGGAAATATGCGCCAAGCAAAATGCTAATGCCTTGTTGCATAGGCCTATGGTTCAAAGGCAATGGTAGTAGAATATAAAATGTATGATAGATTTACACATGACTTTGAAACCTCACTCTTGCATCAGATCTGGTATTTAAGTAGAGAATGGTACAAGGGCTAGCCCACTATTCCCGAGTTTCAAAGCTGAAGCAACTAATTTCTTAGTCATCACATAAAAAAAATGGCTTACTAGAAGCTCAGCATTGGTTGTGAAGCTAGACCTTTTTTTGTGGTATGTTGGGGAAGCTAGTATTCGGTGTTCCTAAGGCAAACATTCCCTTGAAAATTAGTTTTATATTTAATGGGGTCTATTTCACCTTATAGTTGTTCTTGAACCACTGACAGGGTTCCTTGTCACTTGTCAGTATTGTCATGGCTATCAGCACCCATTACAACTATTGGACTAATAAAGAGTATGGGCTCTATGTTGTATCATCATTTAGAAAGCTGAATGGCCAAATAAGTCCAAGATGAACTTTGATAAGTGGAGGAATTTGCTGAACATGCTAAGTTTGATGAGATCCAAAATTCATAAGATGGTCGTTGAGAATCAGTTTTATTCACAGTGAGAACTAAGGGGAAGAATGAGTTTTATGCTTGTAGAATCATCTCTTGACAATTTCTTGTTCTAGCAAATTGTCTGAGTATGGAGTAAACTCTTTAGTTGTGTGAAGAACAGTTGCAACTAACCAATGATTCTGTGGGTAAATGATGATTTGCAATGCAGTAACTTCTTTAATTGTGTTGCTGAGAACAGTTGGAATTAACAGAGATCAGTGATTTCATTGCCAAAGTAAACCAGGGTAGCCTGAACAGTGAAAATTTTCAAGTATGATATGCAATTTTGGTAATGGGAATCAGTGAATATCTGATCATGGAATCATACTTTTTAAAGAGATGCATGTGTCATCGGACAACTCCCAAATATTTAATAGCAGTTTGTTTCCATGTCCCAATGGACAATTTCTGATATTTATAATAGCATGATTAGTAAAACATCCTCTTATCAAATAAGGTAATGATACTTGAAAAATTTTCTTGTTGGACTGTAGGAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAGGTAAAAAATATAAAGTTCCTTTGATATATTGATGTTGGTTAACTTTCCTTGTCATGTGAAGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACGGTGAGTAAACTATGTTATAAGCACCCTATTTTTTTCAATTCAATTTCTAGAGCTGAGCTGAAGCAGGAGAGCTTAAATTTTCATTCTAAATAGTGATGACATTTGCCACAAGCTGCTTTATTGATCTGATCAAGATGAGTCATCTCTTTACTGGTTGTTTGAGTATTTTATCCTTCCAAGTGTCCTCAAGGGGATTGCTTGGTATTGAGGCTTAGGAGCACCAACCTGGAGATTCAGTTTGGATCCCAGGCAGAATACCGAATACATTTTGGTGAACAGATTTACTTGAGTAATAGGTCCCCGCTTATTAATTGGAGTTACTTGCAAGTTAATCCAGACATCACTGCCATAAAGAAAAAAGAGGGAAGGTTCAAAGTTATCCTTGTACTATGTGTAATTTCTTGCACTTTGTTAGACTTCTGGTCCATTTATACCCTTCTCGATTAACTTATCGTTTCATATTTTCCATCACCGTTAATGTAGCTTCAAAGTGAATTTGATGGACTCTAATACGTGTTCTACACGTCTAAATGCTTTGAGAAAAATCATGTCCAAATTTAACCCTCGACTTTTGACTATGGTTGAAAAGTTGACCCTCAGGTTGGAGTTCTGGTAGAGGTTAAGAGCAAAATAAGACTTTTTCCTCTGTGGGCTGATATAAGACAGTTTAATAGAGGACACACTTGCTCAATGGTTAGTACATGGGCAAATTTGACCATTTTCCCAAGGTAAAATAAAATTAGATAATCAAAAAGGAATACGATCGTCAGTGTAAAGTACTTTGAGATCTTGTATTTTTGTATGTTACCTTTCTCAAAAAGAAAATCTTGTATTTTTGTGCTGTAGAGGTGTCTGTAGACTTCTGCAAGTTCTAGATTATTTGAGAGAAAAGTGACCCTGTAAGTGGGATACTTTTTCGCCTTTTCTTTTAGAAACACTTCTTTAGATCTTTCTTTTATTATTATAGAAGTAGAAGCTTCTTTTAATCATAGAAGATCTAGTGAAGTACCAAAGTTAAACAGGGCCTGCTCCCAGGTGGGGATGTCTGCCCCCTCTCTGTTATAAAGAGTGCCAGTGAGATCACATTGTTACATATTTGTGGAAAACTTCTGTTACATATGGGATCTATATCCTTTTTTCTTATTTGCTCTTTCTCAATTTTGCAGGTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGA</genome_strand>
        <mrna_strand>CTTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296250" ref_strand="+" ref_description="SGN-E296250 [cLET-24-F20]">
      <seq>tgagcttgagaaataataaagacacttatgtttcaaagatcaacatttggtggcattaattcaaaactcagcaatatcagcagtcgcctcccaacggttaaccatattctttcagcaataaagaagaaaaagtctatggatacgatcattctttcattagttgcctctgtatgcatgtttctcattttggtttactggatgacgaaatgagacagtaattaattggactcctgatggagctttgagcaccatctttgcttgtttgtatctttttgtatattcaccagtgaattttgtgactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="106731" stop="104667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106433" g_stop="106338" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106337" i_stop="105172" i_length="1166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105171" g_stop="104967" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="301" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="302" polyA_stop="311"/>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E296250" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106433" e_stop="106338"/>
          <exon e_start="105171" e_stop="104967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACGGTGAGTAAACTATGTTATAAGCACCCTATTTTTTTCAATTCAATTTCTAGAGCTGAGCTGAAGCAGGAGAGCTTAAATTTTCATTCTAAATAGTGATGACATTTGCCACAAGCTGCTTTATTGATCTGATCAAGATGAGTCATCTCTTTACTGGTTGTTTGAGTATTTTATCCTTCCAAGTGTCCTCAAGGGGATTGCTTGGTATTGAGGCTTAGGAGCACCAACCTGGAGATTCAGTTTGGATCCCAGGCAGAATACCGAATACATTTTGGTGAACAGATTTACTTGAGTAATAGGTCCCCGCTTATTAATTGGAGTTACTTGCAAGTTAATCCAGACATCACTGCCATAAAGAAAAAAGAGGGAAGGTTCAAAGTTATCCTTGTACTATGTGTAATTTCTTGCACTTTGTTAGACTTCTGGTCCATTTATACCCTTCTCGATTAACTTATCGTTTCATATTTTCCATCACCGTTAATGTAGCTTCAAAGTGAATTTGATGGACTCTAATACGTGTTCTACACGTCTAAATGCTTTGAGAAAAATCATGTCCAAATTTAACCCTCGACTTTTGACTATGGTTGAAAAGTTGACCCTCAGGTTGGAGTTCTGGTAGAGGTTAAGAGCAAAATAAGACTTTTTCCTCTGTGGGCTGATATAAGACAGTTTAATAGAGGACACACTTGCTCAATGGTTAGTACATGGGCAAATTTGACCATTTTCCCAAGGTAAAATAAAATTAGATAATCAAAAAGGAATACGATCGTCAGTGTAAAGTACTTTGAGATCTTGTATTTTTGTATGTTACCTTTCTCAAAAAGAAAATCTTGTATTTTTGTGCTGTAGAGGTGTCTGTAGACTTCTGCAAGTTCTAGATTATTTGAGAGAAAAGTGACCCTGTAAGTGGGATACTTTTTCGCCTTTTCTTTTAGAAACACTTCTTTAGATCTTTCTTTTATTATTATAGAAGTAGAAGCTTCTTTTAATCATAGAAGATCTAGTGAAGTACCAAAGTTAAACAGGGCCTGCTCCCAGGTGGGGATGTCTGCCCCCTCTCTGTTATAAAGAGTGCCAGTGAGATCACATTGTTACATATTTGTGGAAAACTTCTGTTACATATGGGATCTATATCCTTTTTTCTTATTTGCTCTTTCTCAATTTTGCAGGTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACT</genome_strand>
        <mrna_strand>TGAGCTTGAGAAATAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287948" ref_strand="+" ref_description="SGN-E287948 [cLES-7-K13]">
      <seq>ttcaacaagtaaattcacaaatgcaagcatgggtttcatcgggaggatctgagatcttctctcatacactgactcgccatcaagaaattcttcaagatctttttcaggagtttaaccggatccgttcaagttacagagccaagaaagagcatgcttcattgcttgaagattttagagagttcgaccggaccaggttagatctggaagatggtagtgggtctcatgaccaagcactccttaacgaacgtgctactctccataggactactggacagatggatggtgtgatttctcaagctcaagaaacaataaagacacttatgtttcaaagatcaacatttggtggcattaattcaaaactcagcaatatcagcagtcgcctcccaacggttaaccatattctttcagcaataaagaagaaaaagtctatggatacgatcattctttcattagttgcctctgtatgcatgtttctcattttggtttactggatgacgaaatgagacagtaattaattggactcctgatggagctttgagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="108816" stop="104720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108516" g_stop="108410" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108409" i_stop="107226" i_length="1184">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107225" g_stop="107058" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="275" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107057" i_stop="106452" i_length="606">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106451" g_stop="106338" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="389" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106337" i_stop="105172" i_length="1166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105171" g_stop="105020" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="541" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E287948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108516" e_stop="108410"/>
          <exon e_start="107225" e_stop="107058"/>
          <exon e_start="106451" e_stop="106338"/>
          <exon e_start="105171" e_stop="105020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAGGTTCTTTAAATTATTTTTTCCCGCTTGATCTTGACGCAACTCTATTTTATACAGATTCTGTAACTACAAGCCATGGATATTTTGTAGTAATGGAAATATGCGCCAAGCAAAATGCTAATGCCTTGTTGCATAGGCCTATGGTTCAAAGGCAATGGTAGTAGAATATAAAATGTATGATAGATTTACACATGACTTTGAAACCTCACTCTTGCATCAGATCTGGTATTTAAGTAGAGAATGGTACAAGGGCTAGCCCACTATTCCCGAGTTTCAAAGCTGAAGCAACTAATTTCTTAGTCATCACATAAAAAAAATGGCTTACTAGAAGCTCAGCATTGGTTGTGAAGCTAGACCTTTTTTTGTGGTATGTTGGGGAAGCTAGTATTCGGTGTTCCTAAGGCAAACATTCCCTTGAAAATTAGTTTTATATTTAATGGGGTCTATTTCACCTTATAGTTGTTCTTGAACCACTGACAGGGTTCCTTGTCACTTGTCAGTATTGTCATGGCTATCAGCACCCATTACAACTATTGGACTAATAAAGAGTATGGGCTCTATGTTGTATCATCATTTAGAAAGCTGAATGGCCAAATAAGTCCAAGATGAACTTTGATAAGTGGAGGAATTTGCTGAACATGCTAAGTTTGATGAGATCCAAAATTCATAAGATGGTCGTTGAGAATCAGTTTTATTCACAGTGAGAACTAAGGGGAAGAATGAGTTTTATGCTTGTAGAATCATCTCTTGACAATTTCTTGTTCTAGCAAATTGTCTGAGTATGGAGTAAACTCTTTAGTTGTGTGAAGAACAGTTGCAACTAACCAATGATTCTGTGGGTAAATGATGATTTGCAATGCAGTAACTTCTTTAATTGTGTTGCTGAGAACAGTTGGAATTAACAGAGATCAGTGATTTCATTGCCAAAGTAAACCAGGGTAGCCTGAACAGTGAAAATTTTCAAGTATGATATGCAATTTTGGTAATGGGAATCAGTGAATATCTGATCATGGAATCATACTTTTTAAAGAGATGCATGTGTCATCGGACAACTCCCAAATATTTAATAGCAGTTTGTTTCCATGTCCCAATGGACAATTTCTGATATTTATAATAGCATGATTAGTAAAACATCCTCTTATCAAATAAGGTAATGATACTTGAAAAATTTTCTTGTTGGACTGTAGGAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAGGTAAAAAATATAAAGTTCCTTTGATATATTGATGTTGGTTAACTTTCCTTGTCATGTGAAGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACGGTGAGTAAACTATGTTATAAGCACCCTATTTTTTTCAATTCAATTTCTAGAGCTGAGCTGAAGCAGGAGAGCTTAAATTTTCATTCTAAATAGTGATGACATTTGCCACAAGCTGCTTTATTGATCTGATCAAGATGAGTCATCTCTTTACTGGTTGTTTGAGTATTTTATCCTTCCAAGTGTCCTCAAGGGGATTGCTTGGTATTGAGGCTTAGGAGCACCAACCTGGAGATTCAGTTTGGATCCCAGGCAGAATACCGAATACATTTTGGTGAACAGATTTACTTGAGTAATAGGTCCCCGCTTATTAATTGGAGTTACTTGCAAGTTAATCCAGACATCACTGCCATAAAGAAAAAAGAGGGAAGGTTCAAAGTTATCCTTGTACTATGTGTAATTTCTTGCACTTTGTTAGACTTCTGGTCCATTTATACCCTTCTCGATTAACTTATCGTTTCATATTTTCCATCACCGTTAATGTAGCTTCAAAGTGAATTTGATGGACTCTAATACGTGTTCTACACGTCTAAATGCTTTGAGAAAAATCATGTCCAAATTTAACCCTCGACTTTTGACTATGGTTGAAAAGTTGACCCTCAGGTTGGAGTTCTGGTAGAGGTTAAGAGCAAAATAAGACTTTTTCCTCTGTGGGCTGATATAAGACAGTTTAATAGAGGACACACTTGCTCAATGGTTAGTACATGGGCAAATTTGACCATTTTCCCAAGGTAAAATAAAATTAGATAATCAAAAAGGAATACGATCGTCAGTGTAAAGTACTTTGAGATCTTGTATTTTTGTATGTTACCTTTCTCAAAAAGAAAATCTTGTATTTTTGTGCTGTAGAGGTGTCTGTAGACTTCTGCAAGTTCTAGATTATTTGAGAGAAAAGTGACCCTGTAAGTGGGATACTTTTTCGCCTTTTCTTTTAGAAACACTTCTTTAGATCTTTCTTTTATTATTATAGAAGTAGAAGCTTCTTTTAATCATAGAAGATCTAGTGAAGTACCAAAGTTAAACAGGGCCTGCTCCCAGGTGGGGATGTCTGCCCCCTCTCTGTTATAAAGAGTGCCAGTGAGATCACATTGTTACATATTTGTGGAAAACTTCTGTTACATATGGGATCTATATCCTTTTTTCTTATTTGCTCTTTCTCAATTTTGCAGGTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCA</genome_strand>
        <mrna_strand>TTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340839" ref_strand="+" ref_description="SGN-E340839 [cTOF-5-P1]">
      <seq>agaaaatttcaccacagttatgatgttgaatccgtcttttcatatgtggaagtatttctcaaacacttggagctgcctaaaaaacttacttttgtttcttgcttctctttcaatgcggatctattgttttcctcatattatagctggggtgatgtgctaaacatgagatatatacatttaaataaagtaaaaatttaagacttggtcagcgtaatatatgttaatcttaaaatgaatgtgcagtcgttatggacttgaaaccaaaacaatatgcaactatatacttatcttcaaatcattgcacccaaactattacgcttaatgttttttgagtaacagctgtaaaggaaggaaaaactataagagtacaaagctctgtctagatggccacagattttccatggacattgtaatttttaagagtacttattttattgtagtaatcaggtgctgctctttctgttagttttatagccgtgtgtattgttgtatttaattgccgactcttgataatatatcagaagaaattactgacttcttgatatagatggatggntgtgatttctcaagctcaagaaacaataaagacacttatgtttcaaagatcaacatttggntggcattaattcaaaaactcagcatatcagcagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="107298" stop="106048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106998" g_stop="106348" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E340839" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106998" e_stop="106348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGG-TGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGG-TGGCATTAATTC-AAAACTCAGCAATATCAGCAGTCG</genome_strand>
        <mrna_strand>AGAAAATTTCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGNTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGNTGGCATTAATTCAAAAACTCAGC-ATATCAGCAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690206" ref_strand="+" ref_description="SGN-E690206 [LH_Ea02O12]">
      <seq>cgttttttttttttatttgaaagaaattagatagtgactcaccttacgctaaggtgaaaaatactgaagttacagttttacaatttatatgtggcatgttgtcaatagattaaagttacaatttcacagtatggtcccttacatatacaagggatgcttacaggaaaatgagtccagcataaatgcacacttgccctgcatctatccctacatatacatgggatgcttacaggaaaatgagtccagtacaaatgaacacttgccctgcatctatccctacagacttgtgatcactttttcatactttgattcgatcaatcaatcaagatgttaacgcttttgcttatgcaggttagtaaagtatgtttttgcgtttcaaagggagtacttgacgagtggaaaacacaaataagaaaaaaggaaaacagtcgctctcaggtagtcattctataatggtttctaggagatgtcatttccctacagaatttactttcagtcagcaagtggaacgccctaaaaaacagtttcattctgctatatccatcacaacattggtggtgctaacatcagtatcgtcctgcttctccaccatctctatatcagtatctccgtttaaactgcagtgttttatctactctccaggaatctccgaagggataatatcatgggatatattgttttctgttgtccttaaattgttagtaccctcggacacaaattctgtacctgttggaaaattgtcatgtttttcctcagcactgtgaagcctaccatcccttagaaatgatggccctggagaggggtttccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="111684" stop="113089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111979" g_stop="112789" g_length="811"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="811" r_length="803" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E690206" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111979" e_stop="112789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATTTGAAAGAAATTAGATAGCGACTCACCTTACGCTAAGGTGAAAAATACTGAAGTTACAATTTTACAACATGTCCATTTATATGTGGCATGTTGTCAATAGATTAAAGTTACAATTTCACAGTATGGTCCCTTACTTATACATGGGATGCTTACAGGAAAATGAGTCCAGCACAAATGAACAATTGCCCTGCATCTATCCCTACATATACATGGGGTGCTTACAGGAAAATGAGTCCAGTACAAATGAACACTTGCCCTGCATCTATCCCTACAGACTTGTGATCACTTTTTCATACTTTGATTCGATCAATCAATCAAGATGTTAACGCTTTTGCTTATGCAGGTTAGTAAAGTATGTTTTCGCGTTTCAAAGGGAGTACTTGACGAGTGGAAAACACAAATAAGAAAAAAGGAAAACAGTCGCTCTTGTGTAGTCATTCTATAATGGTTTCTAGGAGATGTCATTTCCCTACAGAATTTACTTTCAGTCAGCAAGTGGAACGCCCTAAAAAACAGTTTCATTCTGCTATATCCATCACAACATTGGTGGTGCTAACGTAAGTATCATCCTGCTTCTCCACCATCTCTATATCAGTATCTCCGTTTAAACTGCAGTGTTTTATCTCCTCTCCAGGAATCTCTGAAGGGCTAATGTCATGGGATATATTGCTTTCTGTTGTCCTTAAATTGCTAGTACCCTCGGACACAAATTCTGTACCTGTTGGAAAATTGTCATGTTTTCCCTCAGTAGTGTGAAGCCTACCATCCCTTAGAAATGATGGCACTGGAGAGGGGTTTCCACC</genome_strand>
        <mrna_strand>TTTTTTATTTGAAAGAAATTAGATAGTGACTCACCTTACGCTAAGGTGAAAAATACTGAAGTTACAGTTTT---ACA-----ATTTATATGTGGCATGTTGTCAATAGATTAAAGTTACAATTTCACAGTATGGTCCCTTACATATACAAGGGATGCTTACAGGAAAATGAGTCCAGCATAAATGCACACTTGCCCTGCATCTATCCCTACATATACATGGGATGCTTACAGGAAAATGAGTCCAGTACAAATGAACACTTGCCCTGCATCTATCCCTACAGACTTGTGATCACTTTTTCATACTTTGATTCGATCAATCAATCAAGATGTTAACGCTTTTGCTTATGCAGGTTAGTAAAGTATGTTTTTGCGTTTCAAAGGGAGTACTTGACGAGTGGAAAACACAAATAAGAAAAAAGGAAAACAGTCGCTCTCAGGTAGTCATTCTATAATGGTTTCTAGGAGATGTCATTTCCCTACAGAATTTACTTTCAGTCAGCAAGTGGAACGCCCTAAAAAACAGTTTCATTCTGCTATATCCATCACAACATTGGTGGTGCTAACATCAGTATCGTCCTGCTTCTCCACCATCTCTATATCAGTATCTCCGTTTAAACTGCAGTGTTTTATCTACTCTCCAGGAATCTCCGAAGGGATAATATCATGGGATATATTGTTTTCTGTTGTCCTTAAATTGTTAGTACCCTCGGACACAAATTCTGTACCTGTTGGAAAATTGTCATGTTTTTCCTCAGCACTGTGAAGCCTACCATCCCTTAGAAATGATGGCCCTGGAGAGGGGTTTCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320339" ref_strand="+" ref_description="SGN-E320339 [cTOB-22-G11]">
      <seq>tgaaattgcttgtgatggtgaagtggatcgtttgagtgttgctcagctctacaataagtagcaagtcagccagctagtctggcgttaaaaaggaacctccttccactggaggcctttttccaagagatgaaacgagtactttcttccgcgcatcagaatcctggtaatgctccagggagtgaacttcaagaagattggaagcccgaaggtggaaacccctctccagtgccatcatttctaagggatggtaggcttcacactactgagggaaaacatgacaattttccaacaggtacagaatttgtgtccgagggtactagcaatttaaggacaacagaaagcaatatatcccatgacattagcccttcagagattcctggagaggagataaaacactgcagtttaaacggagatactgatatagagatggtggagaagcaggatgatacttacgttagcaccaccaatgttgtgatggatatagcagaatgaaactgttttttagggcgttccacttgctgactgaaagtaaattctgtagggaaatgacatctcctagaaaccattatagaatgactacacaagagcgactggtttccttttttcttatttgtgttttccactcgtcaagtactccctttgaaacgcgaaaacatactttactaacctgcataagcaaaagcgttaacatcttgattgattgatcgaatcaaagtatgaaaaagtgatcacnagtctgtagggataaatgcagggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="115124" stop="111938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114824" g_stop="114767" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114766" i_stop="112939" i_length="1828">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112938" g_stop="112238" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="759" r_length="701" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E320339" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114824" e_stop="114767"/>
          <exon e_start="112938" e_stop="112238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAGGTGAATATTCTGCTCCCATACATATCTCAGGATTTAAGCTTATATGCACGTGTATCCCATCTTTTTTTTAATAAATTCGTTAGAATGATTAAAATTTTATGAAGACGTGTGTAATGATTAGTATAAAAATGCAACAATCTCAAATAAATGTTCCGATAATATAATCTTTTCCTAGAAAATTAAATTAAAGAAGAATGATAGAGAGAAAATATAAAAAATAAAATATAGAAGGAAAAGACAACATACAATAATCTTTGCATGCCAAATTTATTTTTTACAACCATACCTTAACTCCAAAAAATCGAAGAAATAAATTTCAGAACAATGTCAAATGATACAATATTATATTATAGATGAGTTGCATACTAAGTTTATTTTGGACAATCATACCTACTCCAAAATGAAAAAGAAAAACTCAAATCATAAGCTAACATAAAAAAGATCTAAAGAATATATATGTCATATCTTATACTTCTAAACTTAACACTTGAACTATATTGTAAGAAAACTTCTCCCTTTAATTTCATAATGAAGCTATCTGTTATTTCCTTTAGTTAGTTTTTGACGATATGTATCTATATCATTATCTGGGAAGAAGAAAAGAGACCAGTAAATGATGATGAATATGATGATATCAAGAACAATTTACTGATATTTAGTTGTCTTTTCACCTACCAAACTAATAGAGAACATTGAATTATAATACATAAAATTTATTTTAGTTTCAAAATTCAAAGAGTCACTGAATTGGAAGAGTCATTTATTATTAAAGTGAAGTTGTTGAACTTCATATTCCATCATTATGTAATTAAAATATTAGTATTTAATAAATTAATGAAATTTTATTTTTATTTAGTGAAAGGGTAAAATGGTAATCCAACTTTGAATATTGGAGCTTCCCATTTATAATAATATATAATATAATAAAATAATAATAATAATAATAATATGATATGATGATGATATATGATATGATGATAAGTAGTAAAGACTAGCCTATGCAGTGCACAGGCCCATTCCCAATGAATTTTTTTTGAATAAAATTGAAGAATGAGTACTTTTTCCTAAAATTGACTCTTAATACCTGCTTGAATATCTCATAATTTTCTGAAGAGAAATTGACAATTTCCAATCAAAATATATTCTGCTTTTACTCATAATAGAGAAACTTATTAAAGAAGAAGCTGACATTATGAAATGACGAGAGATAGCCAACTTTAAGGTCAAGACTAAGGGTGTATTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCATGGAAAACAAGTAGATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTATAAAATATTTTCCGGAAATGATTTTTAGTGTTGGGATGGGTGGGGGCTGGTAGGGGGGCTGGCCGGTGGAGGGGAGTAGGAGTTTAAAAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTACGTTAGCACCACCAATGTTGTGATGGATATAGCAGAATGAAACTGTTTTTTAGGGCGTTCCACTTGCTGACTGAAAGTAAATTCTGTAGGGAAATGACATCTCCTAGAAACCATTATAGAATGACTACACAAGAGCGACTGTTTTCCTTTTTTCTTATTTGTGTTTTCCACTCGTCAAGTACTCCCTTTGAAACGCGAAAACATACTTTACTAACCTGCATAAGCAAAAGCGTTAACATCTTGATTGATTGATCGAATCAAAGTATGAAAAAGTGATCACAAGTCTGTAGGGATAGATGCAGGGCAA</genome_strand>
        <mrna_strand>TGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTACGTTAGCACCACCAATGTTGTGATGGATATAGCAGAATGAAACTGTTTTTTAGGGCGTTCCACTTGCTGACTGAAAGTAAATTCTGTAGGGAAATGACATCTCCTAGAAACCATTATAGAATGACTACACAAGAGCGACTGGTTTCCTTTTTTCTTATTTGTGTTTTCCACTCGTCAAGTACTCCCTTTGAAACGCGAAAACATACTTTACTAACCTGCATAAGCAAAAGCGTTAACATCTTGATTGATTGATCGAATCAAAGTATGAAAAAGTGATCACNAGTCTGTAGGGATAAATGCAGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320548" ref_strand="+" ref_description="SGN-E320548 [cTOB-22-G12]">
      <seq>tgaaattgcttgtgatggtgaagtggatcgtttgagtgttgctcagctctacaataagtagcaagtcagccagctagtctggcgttaaaaaggaacctccttccactggaggcctttttccaagagatgaaacgagtactttcttccgcgcatcagaatcctggtaatgctccagggagtgaacttcaagaagattggaagcccgaaggtggaaacccctctccagtgccatcatttctaagggatggtaggcttcacactactgagggaaaacatgacaattttccaacaggtacagaatttgtgtccgagggtactagcaatttaaggacaacagaaagcaatatatcccatgacattagcccttcagagattcctggagaggagataaaacactgcagtttaaacggagatactgatatagagatggtggagaagcaggatgatacttacgttagcaccaccaatgttgtgatggatatagcagaatgaaactgttttttagggcgttccacttgctgactgaaagtaaattctgtagggaaatgacatctcctagaaaccattatagaatgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="115124" stop="112118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114824" g_stop="114767" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114766" i_stop="112939" i_length="1828">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112938" g_stop="112418" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="579" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E320548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114824" e_stop="114767"/>
          <exon e_start="112938" e_stop="112418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAGGTGAATATTCTGCTCCCATACATATCTCAGGATTTAAGCTTATATGCACGTGTATCCCATCTTTTTTTTAATAAATTCGTTAGAATGATTAAAATTTTATGAAGACGTGTGTAATGATTAGTATAAAAATGCAACAATCTCAAATAAATGTTCCGATAATATAATCTTTTCCTAGAAAATTAAATTAAAGAAGAATGATAGAGAGAAAATATAAAAAATAAAATATAGAAGGAAAAGACAACATACAATAATCTTTGCATGCCAAATTTATTTTTTACAACCATACCTTAACTCCAAAAAATCGAAGAAATAAATTTCAGAACAATGTCAAATGATACAATATTATATTATAGATGAGTTGCATACTAAGTTTATTTTGGACAATCATACCTACTCCAAAATGAAAAAGAAAAACTCAAATCATAAGCTAACATAAAAAAGATCTAAAGAATATATATGTCATATCTTATACTTCTAAACTTAACACTTGAACTATATTGTAAGAAAACTTCTCCCTTTAATTTCATAATGAAGCTATCTGTTATTTCCTTTAGTTAGTTTTTGACGATATGTATCTATATCATTATCTGGGAAGAAGAAAAGAGACCAGTAAATGATGATGAATATGATGATATCAAGAACAATTTACTGATATTTAGTTGTCTTTTCACCTACCAAACTAATAGAGAACATTGAATTATAATACATAAAATTTATTTTAGTTTCAAAATTCAAAGAGTCACTGAATTGGAAGAGTCATTTATTATTAAAGTGAAGTTGTTGAACTTCATATTCCATCATTATGTAATTAAAATATTAGTATTTAATAAATTAATGAAATTTTATTTTTATTTAGTGAAAGGGTAAAATGGTAATCCAACTTTGAATATTGGAGCTTCCCATTTATAATAATATATAATATAATAAAATAATAATAATAATAATAATATGATATGATGATGATATATGATATGATGATAAGTAGTAAAGACTAGCCTATGCAGTGCACAGGCCCATTCCCAATGAATTTTTTTTGAATAAAATTGAAGAATGAGTACTTTTTCCTAAAATTGACTCTTAATACCTGCTTGAATATCTCATAATTTTCTGAAGAGAAATTGACAATTTCCAATCAAAATATATTCTGCTTTTACTCATAATAGAGAAACTTATTAAAGAAGAAGCTGACATTATGAAATGACGAGAGATAGCCAACTTTAAGGTCAAGACTAAGGGTGTATTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCATGGAAAACAAGTAGATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTATAAAATATTTTCCGGAAATGATTTTTAGTGTTGGGATGGGTGGGGGCTGGTAGGGGGGCTGGCCGGTGGAGGGGAGTAGGAGTTTAAAAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTACGTTAGCACCACCAATGTTGTGATGGATATAGCAGAATGAAACTGTTTTTTAGGGCGTTCCACTTGCTGACTGAAAGTAAATTCTGTAGGGAAATGACATCTCCTAGAAACCATTATAGAATGACTA</genome_strand>
        <mrna_strand>TGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTACGTTAGCACCACCAATGTTGTGATGGATATAGCAGAATGAAACTGTTTTTTAGGGCGTTCCACTTGCTGACTGAAAGTAAATTCTGTAGGGAAATGACATCTCCTAGAAACCATTATAGAATGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290079" ref_strand="+" ref_description="SGN-E290079 [cLET-5-O12]">
      <seq>aaacgagtactttcttccgcgcatcagaatcctggtaatgctccagggagtgaacttcaagaagattggaagcccgaaggtggaaacccctctccagtgccatcatttctaagggatggtaggcttcacactactgagggaaaacatgacaattttccaacaggtacagaatttgtgtccgagggtactagcaatttaaggacaacagaaagcaatatatcccatgacattagcccttcagagattcctggagaggagataaaacactgcagtttaaacggagatactgatatagagatggtggagaagcaggatgatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="113167" stop="112245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112867" g_stop="112545" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E290079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112867" e_stop="112545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTA</genome_strand>
        <mrna_strand>AAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244716" ref_strand="+" ref_description="SGN-E244716 [cLED-38-O22]">
      <seq>tgaaacgagtactttcttccgcgcatcagaatcctggtaatgctccagggagtgaacttcaagaagattggaagcccgaaggtggaaacccctctccagtgccatcatttctaagggatggtaggcttcacactactgagggaaaacatgacaattttccaacaggtacagaatttgtgtccgagggtgctagcaatttaaggacaacagaaagcaatatatcccatgacattagcccttcagagattcctggagaggagataaaacactgcagtttaaacggagatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="113169" stop="112278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112869" g_stop="112578" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E244716" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112869" e_stop="112578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGA</genome_strand>
        <mrna_strand>TGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTGCTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303455" ref_strand="+" ref_description="SGN-E303455 [cLEX-2-G5]">
      <seq>agagagacgttgttggttgcggaaaacctcatgaactgccagggaaagagatggagcgtgacaccaagattgtagacgaactaagtcgaagtgttgaggcagctggcactgaaatggttgataatttcccaaaacttattgcaatttctccacagggaatctctgaaattgcttgtgatggtgaagtggatcgtttgagtgttgctcagctctacaataagatgtgcaaggtactttctgactctggtgaagattcatttaatgcagtagcaagtcagccagctagtctggcgttaaaaaggaacctccttccactggaggcctttttccaagagatgaaacgagtactttcttccgcgcatcagaatcctggtaatgctccagggagtgaacttcaagaagattggaagcccgaaggtggaaacccctctccagtgccatcatttctaagggatggtaggcttcacactactgagggaaaacatgacaattttccaacaggtacagaatttgtgtccgagggtactagcaatttaaggacaacagaaagcaatatatcccatgacattagcccttcagagattcctggagaggagataaaacactgcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="115357" stop="112293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115057" g_stop="114925" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="147" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114924" i_stop="114841" i_length="84">
            <donor d_prob="0.675" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114840" g_stop="114767" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="221" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114766" i_stop="112985" i_length="1782">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112984" g_stop="112593" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="613" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E303455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115057" e_stop="114925"/>
          <exon e_start="114840" e_stop="114767"/>
          <exon e_start="112984" e_stop="112593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTTGTAAGTATAGCCATTCATTGCTTGAAGCTTCTCTAGTGCATCAAGAAGCTACTGACTAGCATGCTATCATACTTCTGAACGCAGCTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAGGTGAATATTCTGCTCCCATACATATCTCAGGATTTAAGCTTATATGCACGTGTATCCCATCTTTTTTTTAATAAATTCGTTAGAATGATTAAAATTTTATGAAGACGTGTGTAATGATTAGTATAAAAATGCAACAATCTCAAATAAATGTTCCGATAATATAATCTTTTCCTAGAAAATTAAATTAAAGAAGAATGATAGAGAGAAAATATAAAAAATAAAATATAGAAGGAAAAGACAACATACAATAATCTTTGCATGCCAAATTTATTTTTTACAACCATACCTTAACTCCAAAAAATCGAAGAAATAAATTTCAGAACAATGTCAAATGATACAATATTATATTATAGATGAGTTGCATACTAAGTTTATTTTGGACAATCATACCTACTCCAAAATGAAAAAGAAAAACTCAAATCATAAGCTAACATAAAAAAGATCTAAAGAATATATATGTCATATCTTATACTTCTAAACTTAACACTTGAACTATATTGTAAGAAAACTTCTCCCTTTAATTTCATAATGAAGCTATCTGTTATTTCCTTTAGTTAGTTTTTGACGATATGTATCTATATCATTATCTGGGAAGAAGAAAAGAGACCAGTAAATGATGATGAATATGATGATATCAAGAACAATTTACTGATATTTAGTTGTCTTTTCACCTACCAAACTAATAGAGAACATTGAATTATAATACATAAAATTTATTTTAGTTTCAAAATTCAAAGAGTCACTGAATTGGAAGAGTCATTTATTATTAAAGTGAAGTTGTTGAACTTCATATTCCATCATTATGTAATTAAAATATTAGTATTTAATAAATTAATGAAATTTTATTTTTATTTAGTGAAAGGGTAAAATGGTAATCCAACTTTGAATATTGGAGCTTCCCATTTATAATAATATATAATATAATAAAATAATAATAATAATAATAATATGATATGATGATGATATATGATATGATGATAAGTAGTAAAGACTAGCCTATGCAGTGCACAGGCCCATTCCCAATGAATTTTTTTTGAATAAAATTGAAGAATGAGTACTTTTTCCTAAAATTGACTCTTAATACCTGCTTGAATATCTCATAATTTTCTGAAGAGAAATTGACAATTTCCAATCAAAATATATTCTGCTTTTACTCATAATAGAGAAACTTATTAAAGAAGAAGCTGACATTATGAAATGACGAGAGATAGCCAACTTTAAGGTCAAGACTAAGGGTGTATTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCATGGAAAACAAGTAGATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTATAAAATATTTTCCGGAAATGATTTTTAGTGTTGGGATGGGTGGGGGCTGGTAGGGGGGCTGGCCGGTGGAGGGGAGTAGGAGTTTAAAAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTT</genome_strand>
        <mrna_strand>GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTT....................................................................................CTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244972" ref_strand="+" ref_description="SGN-E244972 [cLEF-2-D3]">
      <seq>aaataaaaatttaaagttgaaaatatttttaaaaagcataattaattttttggggagggggtggggctgaaagacagaaaaattccatggcagtagatatttgaagtatcagcacatataaaatctaatctatcatgcataacagaaacattaggccgaagcatgtccctacttgcatttctttttgcatatgggacaaaatagtcgatacatgtagaactgtaaggtgcagctacaacaactcatatctttaatcaatcatatttgccggaatacgagataaaacatattttcacaggaagggttgtgaagtaggtgttttgtgctttactttttttggttttgcagatgtgcaaggtactttctgactctggtgaagattcatttaatgcagtagcaagtcagccagctagtctggcgttaaaaaggaacctccttccactggaggcctttttccaagagatgaaacgagtactttcttccgcgcatcagaatcctggtaatgctccagggagtgaacttcaagaagattggaagcccgaaggtggaaacccctctccagtgccatcatttctaagggatggtaggcttcacactactgagggaaaacatgacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="113632" stop="112413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113332" g_stop="112713" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E244972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113332" e_stop="112713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTT</genome_strand>
        <mrna_strand>AAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312394" ref_strand="+" ref_description="SGN-E312394 [cTOA-5-H8]">
      <seq>acaagtttctgctccaggagtctatcaagcaccaaatgggctgaatgcggctaatgctgggacttctggaaatcaggtgaaggctgctgatgagactaaccatgaagtctcacatggtacaagcgatccttcaaacagaacccaacttcatcaagattcgtctttgttatatcattttagagagatgcagagaagacaagttgaatttataaggaaaagggtgatgcttcttgagaatgcaattaatgctgagtatcagagagacgttgttggttgcggaaaacctcatgaactgccagggaaagagatggagcgtgacaccaagattgtagacgaactaagtcgaagtgttgaggcagctggcactgaaatggttgataatttcccaaaacttattgcaatttctccacagggaatctctgaaattgcttgtgatggtgaagtggatcgtttgagtgttgctcagctctacaataagtagcaagtcagccagctagtctggcgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="116416" stop="112608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116116" g_stop="115846" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115845" i_stop="115058" i_length="788">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115057" g_stop="114925" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="404" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114924" i_stop="114841" i_length="84">
            <donor d_prob="0.675" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114840" g_stop="114767" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="478" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114766" i_stop="112939" i_length="1828">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112938" g_stop="112908" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="509" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E312394" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116116" e_stop="115846"/>
          <exon e_start="115057" e_stop="114925"/>
          <exon e_start="114840" e_stop="114767"/>
          <exon e_start="112938" e_stop="112908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGTCTGAATACAGCTAATGCTGGGACTTCTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGTACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTTGTAAGTCATCTTAAATTTTCAAAAATATCTGATGTTGGAGTTCATTAGATTATACTTGGAAGTCTATAAGTCATTGATATGTATCCAAAGAGGGTACTAACAAACCTGGTTTCGTCGTCTTTCCTTCTTTTTTTCTCTCCTGGTGTCACGTCGTCTCAGAAGAAAAACTAAGACTTGTAGATCGAGTGTTATGCTCTTTCCTTAAGAGCCATAGGACTACGAACCTGGTTTGATTGGGGTCCTGTAGACTCTAGGTATATTTCCGTTGTCATTCCATGTTAGCAGGCTAGCCTTGGAACTTCATGTTCCGGCTAGTTCTTAATCATTGAATATGTAACCTTGTGGTGTCCCAAACTATGTAAAAGGCTACATTTCTCTATGATTGATAGAGCCTGTGAAATTTGATGTTCTCTTGAGAAAGAACCTTTGGTGTGTTAGATATATACATTCTGCGGACTTTTTTCTGTGAAGCTTAAAGGAATAGAATTTCATGTGTTACTTAGTCTTTGTTTTCTCGTTGTCAAGGGACAGACGAGTCTTTATTCCTTCTACCTGTCTTGGCAGATAAATCATGACTTATCCCAAATATATGTTGTTGAGAACAGCTTTTGACCTTGGTAATTTCACTTTGCTCATTTTCATGTTTTGTGATTTTTGTTTCTCATTTTGTTCCTATATGACTTATGTTTTAATTGTTGGGATTTGCACCCGCATTGATTGATTTGATCATTTGAGGGCAATTAAACCTGTATTCATGTGGTTTATTTGTATCCATGTGCTTCCCTCAGGGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTTGTAAGTATAGCCATTCATTGCTTGAAGCTTCTCTAGTGCATCAAGAAGCTACTGACTAGCATGCTATCATACTTCTGAACGCAGCTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAGGTGAATATTCTGCTCCCATACATATCTCAGGATTTAAGCTTATATGCACGTGTATCCCATCTTTTTTTTAATAAATTCGTTAGAATGATTAAAATTTTATGAAGACGTGTGTAATGATTAGTATAAAAATGCAACAATCTCAAATAAATGTTCCGATAATATAATCTTTTCCTAGAAAATTAAATTAAAGAAGAATGATAGAGAGAAAATATAAAAAATAAAATATAGAAGGAAAAGACAACATACAATAATCTTTGCATGCCAAATTTATTTTTTACAACCATACCTTAACTCCAAAAAATCGAAGAAATAAATTTCAGAACAATGTCAAATGATACAATATTATATTATAGATGAGTTGCATACTAAGTTTATTTTGGACAATCATACCTACTCCAAAATGAAAAAGAAAAACTCAAATCATAAGCTAACATAAAAAAGATCTAAAGAATATATATGTCATATCTTATACTTCTAAACTTAACACTTGAACTATATTGTAAGAAAACTTCTCCCTTTAATTTCATAATGAAGCTATCTGTTATTTCCTTTAGTTAGTTTTTGACGATATGTATCTATATCATTATCTGGGAAGAAGAAAAGAGACCAGTAAATGATGATGAATATGATGATATCAAGAACAATTTACTGATATTTAGTTGTCTTTTCACCTACCAAACTAATAGAGAACATTGAATTATAATACATAAAATTTATTTTAGTTTCAAAATTCAAAGAGTCACTGAATTGGAAGAGTCATTTATTATTAAAGTGAAGTTGTTGAACTTCATATTCCATCATTATGTAATTAAAATATTAGTATTTAATAAATTAATGAAATTTTATTTTTATTTAGTGAAAGGGTAAAATGGTAATCCAACTTTGAATATTGGAGCTTCCCATTTATAATAATATATAATATAATAAAATAATAATAATAATAATAATATGATATGATGATGATATATGATATGATGATAAGTAGTAAAGACTAGCCTATGCAGTGCACAGGCCCATTCCCAATGAATTTTTTTTGAATAAAATTGAAGAATGAGTACTTTTTCCTAAAATTGACTCTTAATACCTGCTTGAATATCTCATAATTTTCTGAAGAGAAATTGACAATTTCCAATCAAAATATATTCTGCTTTTACTCATAATAGAGAAACTTATTAAAGAAGAAGCTGACATTATGAAATGACGAGAGATAGCCAACTTTAAGGTCAAGACTAAGGGTGTATTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCATGGAAAACAAGTAGATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTATAAAATATTTTCCGGAAATGATTTTTAGTGTTGGGATGGGTGGGGGCTGGTAGGGGGGCTGGCCGGTGGAGGGGAGTAGGAGTTTAAAAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAA</genome_strand>
        <mrna_strand>ACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGGCTGAATGCGGCTAATGCTGGGACTTCTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGTACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTT....................................................................................CTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAAGTCAGCCAGCTAGTCTGGCGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402609" ref_strand="+" ref_description="SGN-E402609 [PPC-8-O13]">
      <seq>ctcggaagagacaactagtcctctttttgccaaggacattgtgtcttggtttcctggattaaaaggtggacgtgtttggaaggaagatcatgatttgctgctgctacgggcagtgctaaagcatggttatggaagatggcaagctattatagatgacaaagagttgagaatccaagaagttgtctgtaaagagctgaatcttccttccataactttacctgtgcctggagcttctcagccgcaagttcctcctgctcctggagcttctcaggcgcttcccgcttcaggggtttcacaagtttctgctccaggagtctatcaagcaccaaatggtctgaatacagttaatgctggaactactggaaatcaggtgaaggctgctgatgagactaaccatgaagtctcacatggcacaagcgatccttcaaacagaacccaacttcatcaagattcgtctttgttatatcattttagagagatgcagagaagacaagttgaatttataaggaaaagggtgatgcttcttgagaatgcaattaatgctgaatatcagagagaagttgttggttgcggaaaacctcatgaactgcctgggaaagagatggagtgtgacaccaagattgtagacgaaccaagtcgaagtgttgaggcagctggcactgaaatggttgataatttccaaaacttattgcaatttctcacagggaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="119308" stop="114620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119008" g_stop="118889" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118888" i_stop="116291" i_length="2598">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116290" g_stop="115846" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="565" r_length="445" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115845" i_stop="115058" i_length="788">
            <donor d_prob="0.924" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115057" g_stop="114925" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="697" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114924" i_stop="114841" i_length="84">
            <donor d_prob="0.675" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114840" g_stop="114825" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="712" r_length="15" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E402609" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119008" e_stop="118889"/>
          <exon e_start="116290" e_stop="115846"/>
          <exon e_start="115057" e_stop="114925"/>
          <exon e_start="114840" e_stop="114825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGAAGAGACAACTAGTCCTCTTTTTGCCAAGGACATCGTATCTTGGTTTCCTGGATTGAAAGGTGGACGTGTTTGGAAGGAAGATCATGATTTGCTGCTGCTACGAGCAGTACTAAAGTATGCAATCTTTTCTTTTTCTTTTTCTTTTTTCCCTCTGATCTGTCATGAAGTTAGAAAGTGATGAGCCACTTTGGAGTAACTTCTTAGATGTGACTAAAGTGACATTTTTGTCATGGATGCTCACTAGGAGAACACCAGTGCTACACACAGTTTACAGAGGGGTGGATGGGTTCACGTGAACCCATACTCCTCCACGTGGATCTGCCCCTGTATGAAGGGTTTTATTAGAAAATATGTTAATAGATCTTTTCTGGATAGTTCCATGAAGAGTCTTCTCTGTTTGTGAAAAGGAATCAAATTGCACATCAAGTTGCTTATTAGATTAATTCTAACAAAGGACAGAAAAATATGAACCTATTTTGTTTCATAATGAGTAGGAACGAGTTCTTGATTAACTCAAAGTATAAGGAAATAATGGACAAATTATGTTTAGTTCTAAAGCTTATTTTCATAATTGTATTTTTTTTTTTGAAATTGGTAAATTGTATTCCTTCAGCATTAAGGCTATTCTGGCCACCTCCAAATAGTTTACAAAAAAGAAAAGAGAGATACTTAGCCTATAAAATCCACTAATTGGATTTCCTCTTCTATACTCTGTTCTTTACACCAAAAACCTAGTGAAGTAATTACTTTCCACTTAATCTTCAAAATAGAGGATTCTTTTCCCTCAAAGATCCTCTGGTTCCTCTCCTTCCAAATGGTCCACCAGATGCAGGCTGGGACTGTCCTCCACCATATTTTTGGCTTTTGCTTCCTCCTCTTCTAATCCAACAGCTAAGCAAGTCTGCAGTATGTTCAGGCATGATCCAATTAATTCCAGCAATGGCAGTGAACATAGCCCAAATTTGTGTCGTTACTTCACAATGCATGAAAAGGTGTTTGTTGGTTTCTAGTGCCTCCTTGCAGAGGAGGCATCTAGATGCTATGATCAAGGGAAAACATGAGATATTTTCCTTATGGAAGGGTATATTAGACCAAAAGTTTAATAGAGCATAACATTGCTCAATTTTGGATAATATTAACATAGCATAGCGTTGCTCAATGGTTTCAAGAAAGAACAGAGATTACTCCATTGCATTTGCATACTTGAAAGAGTACTTAATGGTCTTCATTATACTCTGACAATGTCTATGGAAAGAAAATTCAGAAACTTCCCTGACATGATTTCTAAAACGAGCAGGATTTGGATTCATCATCAAAAAGGAGAGAGCAGGGTTTGGAATGAAATATTATAAACACACATGAGAAATATAGATATACTACCAAATCGTATGATACCCTTGATTCCACTTTTTTATGGAAAAAGTACCCATATTGCCCAGTACTATCTGACATTACCCGATTTCCCCCTTCCGTTTGCCTTTTGGTCCATTGATATCCTTACTATTAGCAAAGTGTCTCGTATTGTGCTTGTCAGTACAAGAGCTCCAATGTAAAATGGGGGATTTCATGTCTCCAGCTTTGTCGAGAGAAGCCTAAATTCAGCTTACATCTTTTGTTTTTGGTTTAGAATTACCGTCAGGTTAGGCTCCCTTATAAGGGTGAAAACCAGAGTTTTTTCTAATGGTAGGGGTCTACCAGAGGGAAAAGTTGCTCAATTTCGGATAGTGCAGGGGCAAGTTTGACCTTTTTGGCTTTTTTTTAAAATATAGAAAGGTAATTTTATTTGAATACAACAATGCTAAGATGGTGCTAGCTATGTTCAACTAGGTGTGCTGTACTCTTTCTATACTTAAAAGGGCTCCATACTCCAGGATTTCTTCTCCGTCATTTATTATGTCCCTCTCATCCCTTAAGTGTAAACGTGAAGACATCTAAACTTTTTTTTTTTATAAATTTTTTTGACATCTAAACTTTGCACGAGAAAGATGAAAGATGATCCTTTTTTCCCATTAGAGATCTTATGATTTCCTTCCATCTTGTCCACCATATACAGCATGTATAGTGTGATAATTGAAATATAATAAACAACATATTTTCTTATCAACTGTTATTCATTATTTCTTCTTCTTTTTACTTTGATTTGATGCACTTGAGCCGAGTGTCTTTCAGAAACAGCCTCTCTACCTCTACGAAGTAGTGATGAAGTCTGCATACGCTCTACCCTCCCTAGATCCCACATAGTGGGGTTTCACTGGCTATGTTGTTGTTTTTGCCTCTTCCACATCATTCTGCCAAAGCTAATCAGTGCTTGCTTCAGATCTTCAGTCACTACCCAACATAGTGCATATCTACCTAGCAAATCCATAATGAATGAACAAACGCCTGAGATTCCGTTGCCTCCTCCAAATGTGAAGTTACTAAACGATAAAAGATTGATAAGATCTCTTGCATAATTGGAGCCTAATGTAGGGATGATCTATGTTTATTCATTTAGTTATGCCAGAGTTTTTGTGGTCATTCAACCATCATCCTCTACTTCTTTCTCCGCCAATGCAAATTGTCTGGGTGTACATAGTGTTGCAGCAATTTTTCATTGTGCCTTTCTTTTTGAATGCATCATTGGTCATTTCGGCTGTTGAAATTCCGGGGCAGTAATCTAAATGTTTAGTTCAATTATTGTGCAGAAGATGCTAATTGTTCTATTTTTTGCAGGCATGGTTATGGAAGATGGCAAGCTATTATCGATGACAAAGAGTTGAGAATCCAAGAAGTTGTCTGTAAAGAGCTGAATCTTCCTTCTATAACTTTACCAGTTCCTGGAGCTTCTCAGCCACAAGTTCCTCCTGCTCCTGGAGCTTCTCAGGCGCTTCCCGCTTCAGGGGTTTCACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGTCTGAATACAGCTAATGCTGGGACTTCTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGTACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTTGTAAGTCATCTTAAATTTTCAAAAATATCTGATGTTGGAGTTCATTAGATTATACTTGGAAGTCTATAAGTCATTGATATGTATCCAAAGAGGGTACTAACAAACCTGGTTTCGTCGTCTTTCCTTCTTTTTTTCTCTCCTGGTGTCACGTCGTCTCAGAAGAAAAACTAAGACTTGTAGATCGAGTGTTATGCTCTTTCCTTAAGAGCCATAGGACTACGAACCTGGTTTGATTGGGGTCCTGTAGACTCTAGGTATATTTCCGTTGTCATTCCATGTTAGCAGGCTAGCCTTGGAACTTCATGTTCCGGCTAGTTCTTAATCATTGAATATGTAACCTTGTGGTGTCCCAAACTATGTAAAAGGCTACATTTCTCTATGATTGATAGAGCCTGTGAAATTTGATGTTCTCTTGAGAAAGAACCTTTGGTGTGTTAGATATATACATTCTGCGGACTTTTTTCTGTGAAGCTTAAAGGAATAGAATTTCATGTGTTACTTAGTCTTTGTTTTCTCGTTGTCAAGGGACAGACGAGTCTTTATTCCTTCTACCTGTCTTGGCAGATAAATCATGACTTATCCCAAATATATGTTGTTGAGAACAGCTTTTGACCTTGGTAATTTCACTTTGCTCATTTTCATGTTTTGTGATTTTTGTTTCTCATTTTGTTCCTATATGACTTATGTTTTAATTGTTGGGATTTGCACCCGCATTGATTGATTTGATCATTTGAGGGCAATTAAACCTGTATTCATGTGGTTTATTTGTATCCATGTGCTTCCCTCAGGGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTTGTAAGTATAGCCATTCATTGCTTGAAGCTTCTCTAGTGCATCAAGAAGCTACTGACTAGCATGCTATCATACTTCTGAACGCAGCTCCACAGGGAATCTC</genome_strand>
        <mrna_strand>CTCGGAAGAGACAACTAGTCCTCTTTTTGCCAAGGACATTGTGTCTTGGTTTCCTGGATTAAAAGGTGGACGTGTTTGGAAGGAAGATCATGATTTGCTGCTGCTACGGGCAGTGCTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGTTATGGAAGATGGCAAGCTATTATAGATGACAAAGAGTTGAGAATCCAAGAAGTTGTCTGTAAAGAGCTGAATCTTCCTTCCATAACTTTACCTGTGCCTGGAGCTTCTCAGCCGCAAGTTCCTCCTGCTCCTGGAGCTTCTCAGGCGCTTCCCGCTTCAGGGGTTTCACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGTCTGAATACAGTTAATGCTGGAACTACTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGCACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAATATCAGAGAGAAGTTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCGGAAAACCTCATGAACTGCCTGGGAAAGAGATGGAGTGTGACACCAAGATTGTAGACGAACCAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTT-CCAAAACTTATTGCAATTT....................................................................................CT-CACAGGGAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433021" ref_strand="+" ref_description="SGN-E433021 [STM-57-L14]">
      <seq>ctcgtaagagacaactagtcctctttttgccaggacattgtgtcttggtttcctggattaaaaggtggacgtgtttggaaggaagatcatgatttgctgctgctacgggcagtgctaaagcatggttatggaagatggcaagctattatcgatgacaaagagttgagaatccaagaagttgtctgtaaagagctgaatcttccttccataactttacctgtgcctggagcttctcagccgcaagttcctcctgctcctggagcttctcaggcgcttcccgcttcaggggtttcacaagtttctgctccaggagtctatcaagcaccaaatggtctgaatacagttaatgctggaactactggaaatcaggtgaaggctgctgatgagactaaccatgaagtctcacatggcacaagcgatccttcaaacagaacccaacttcatcaagattcgtctttgttatatcattttagagagatgcagagaagacaagttgaatttataaggaaaagggtgatgcttcttgagaatgcaattaatgctgaatatcagagagaagttgttggttgcggaaaacctcatgaactgcctgggaaagagatggagtgtgacaccaagattgtagacgaaccaagtcgaagtgttgaggcagctggcactgaaatggttgataatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="119308" stop="114643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119008" g_stop="118889" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118888" i_stop="116291" i_length="2598">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116290" g_stop="115846" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="564" r_length="445" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115845" i_stop="115058" i_length="788">
            <donor d_prob="0.924" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115057" g_stop="114943" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="679" r_length="115" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E433021" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119008" e_stop="118889"/>
          <exon e_start="116290" e_stop="115846"/>
          <exon e_start="115057" e_stop="114943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGAAGAGACAACTAGTCCTCTTTTTGCCAAGGACATCGTATCTTGGTTTCCTGGATTGAAAGGTGGACGTGTTTGGAAGGAAGATCATGATTTGCTGCTGCTACGAGCAGTACTAAAGTATGCAATCTTTTCTTTTTCTTTTTCTTTTTTCCCTCTGATCTGTCATGAAGTTAGAAAGTGATGAGCCACTTTGGAGTAACTTCTTAGATGTGACTAAAGTGACATTTTTGTCATGGATGCTCACTAGGAGAACACCAGTGCTACACACAGTTTACAGAGGGGTGGATGGGTTCACGTGAACCCATACTCCTCCACGTGGATCTGCCCCTGTATGAAGGGTTTTATTAGAAAATATGTTAATAGATCTTTTCTGGATAGTTCCATGAAGAGTCTTCTCTGTTTGTGAAAAGGAATCAAATTGCACATCAAGTTGCTTATTAGATTAATTCTAACAAAGGACAGAAAAATATGAACCTATTTTGTTTCATAATGAGTAGGAACGAGTTCTTGATTAACTCAAAGTATAAGGAAATAATGGACAAATTATGTTTAGTTCTAAAGCTTATTTTCATAATTGTATTTTTTTTTTTGAAATTGGTAAATTGTATTCCTTCAGCATTAAGGCTATTCTGGCCACCTCCAAATAGTTTACAAAAAAGAAAAGAGAGATACTTAGCCTATAAAATCCACTAATTGGATTTCCTCTTCTATACTCTGTTCTTTACACCAAAAACCTAGTGAAGTAATTACTTTCCACTTAATCTTCAAAATAGAGGATTCTTTTCCCTCAAAGATCCTCTGGTTCCTCTCCTTCCAAATGGTCCACCAGATGCAGGCTGGGACTGTCCTCCACCATATTTTTGGCTTTTGCTTCCTCCTCTTCTAATCCAACAGCTAAGCAAGTCTGCAGTATGTTCAGGCATGATCCAATTAATTCCAGCAATGGCAGTGAACATAGCCCAAATTTGTGTCGTTACTTCACAATGCATGAAAAGGTGTTTGTTGGTTTCTAGTGCCTCCTTGCAGAGGAGGCATCTAGATGCTATGATCAAGGGAAAACATGAGATATTTTCCTTATGGAAGGGTATATTAGACCAAAAGTTTAATAGAGCATAACATTGCTCAATTTTGGATAATATTAACATAGCATAGCGTTGCTCAATGGTTTCAAGAAAGAACAGAGATTACTCCATTGCATTTGCATACTTGAAAGAGTACTTAATGGTCTTCATTATACTCTGACAATGTCTATGGAAAGAAAATTCAGAAACTTCCCTGACATGATTTCTAAAACGAGCAGGATTTGGATTCATCATCAAAAAGGAGAGAGCAGGGTTTGGAATGAAATATTATAAACACACATGAGAAATATAGATATACTACCAAATCGTATGATACCCTTGATTCCACTTTTTTATGGAAAAAGTACCCATATTGCCCAGTACTATCTGACATTACCCGATTTCCCCCTTCCGTTTGCCTTTTGGTCCATTGATATCCTTACTATTAGCAAAGTGTCTCGTATTGTGCTTGTCAGTACAAGAGCTCCAATGTAAAATGGGGGATTTCATGTCTCCAGCTTTGTCGAGAGAAGCCTAAATTCAGCTTACATCTTTTGTTTTTGGTTTAGAATTACCGTCAGGTTAGGCTCCCTTATAAGGGTGAAAACCAGAGTTTTTTCTAATGGTAGGGGTCTACCAGAGGGAAAAGTTGCTCAATTTCGGATAGTGCAGGGGCAAGTTTGACCTTTTTGGCTTTTTTTTAAAATATAGAAAGGTAATTTTATTTGAATACAACAATGCTAAGATGGTGCTAGCTATGTTCAACTAGGTGTGCTGTACTCTTTCTATACTTAAAAGGGCTCCATACTCCAGGATTTCTTCTCCGTCATTTATTATGTCCCTCTCATCCCTTAAGTGTAAACGTGAAGACATCTAAACTTTTTTTTTTTATAAATTTTTTTGACATCTAAACTTTGCACGAGAAAGATGAAAGATGATCCTTTTTTCCCATTAGAGATCTTATGATTTCCTTCCATCTTGTCCACCATATACAGCATGTATAGTGTGATAATTGAAATATAATAAACAACATATTTTCTTATCAACTGTTATTCATTATTTCTTCTTCTTTTTACTTTGATTTGATGCACTTGAGCCGAGTGTCTTTCAGAAACAGCCTCTCTACCTCTACGAAGTAGTGATGAAGTCTGCATACGCTCTACCCTCCCTAGATCCCACATAGTGGGGTTTCACTGGCTATGTTGTTGTTTTTGCCTCTTCCACATCATTCTGCCAAAGCTAATCAGTGCTTGCTTCAGATCTTCAGTCACTACCCAACATAGTGCATATCTACCTAGCAAATCCATAATGAATGAACAAACGCCTGAGATTCCGTTGCCTCCTCCAAATGTGAAGTTACTAAACGATAAAAGATTGATAAGATCTCTTGCATAATTGGAGCCTAATGTAGGGATGATCTATGTTTATTCATTTAGTTATGCCAGAGTTTTTGTGGTCATTCAACCATCATCCTCTACTTCTTTCTCCGCCAATGCAAATTGTCTGGGTGTACATAGTGTTGCAGCAATTTTTCATTGTGCCTTTCTTTTTGAATGCATCATTGGTCATTTCGGCTGTTGAAATTCCGGGGCAGTAATCTAAATGTTTAGTTCAATTATTGTGCAGAAGATGCTAATTGTTCTATTTTTTGCAGGCATGGTTATGGAAGATGGCAAGCTATTATCGATGACAAAGAGTTGAGAATCCAAGAAGTTGTCTGTAAAGAGCTGAATCTTCCTTCTATAACTTTACCAGTTCCTGGAGCTTCTCAGCCACAAGTTCCTCCTGCTCCTGGAGCTTCTCAGGCGCTTCCCGCTTCAGGGGTTTCACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGTCTGAATACAGCTAATGCTGGGACTTCTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGTACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTTGTAAGTCATCTTAAATTTTCAAAAATATCTGATGTTGGAGTTCATTAGATTATACTTGGAAGTCTATAAGTCATTGATATGTATCCAAAGAGGGTACTAACAAACCTGGTTTCGTCGTCTTTCCTTCTTTTTTTCTCTCCTGGTGTCACGTCGTCTCAGAAGAAAAACTAAGACTTGTAGATCGAGTGTTATGCTCTTTCCTTAAGAGCCATAGGACTACGAACCTGGTTTGATTGGGGTCCTGTAGACTCTAGGTATATTTCCGTTGTCATTCCATGTTAGCAGGCTAGCCTTGGAACTTCATGTTCCGGCTAGTTCTTAATCATTGAATATGTAACCTTGTGGTGTCCCAAACTATGTAAAAGGCTACATTTCTCTATGATTGATAGAGCCTGTGAAATTTGATGTTCTCTTGAGAAAGAACCTTTGGTGTGTTAGATATATACATTCTGCGGACTTTTTTCTGTGAAGCTTAAAGGAATAGAATTTCATGTGTTACTTAGTCTTTGTTTTCTCGTTGTCAAGGGACAGACGAGTCTTTATTCCTTCTACCTGTCTTGGCAGATAAATCATGACTTATCCCAAATATATGTTGTTGAGAACAGCTTTTGACCTTGGTAATTTCACTTTGCTCATTTTCATGTTTTGTGATTTTTGTTTCTCATTTTGTTCCTATATGACTTATGTTTTAATTGTTGGGATTTGCACCCGCATTGATTGATTTGATCATTTGAGGGCAATTAAACCTGTATTCATGTGGTTTATTTGTATCCATGTGCTTCCCTCAGGGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCC</genome_strand>
        <mrna_strand>CTCGTAAGAGACAACTAGTCCTCTTTTTGCC-AGGACATTGTGTCTTGGTTTCCTGGATTAAAAGGTGGACGTGTTTGGAAGGAAGATCATGATTTGCTGCTGCTACGGGCAGTGCTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGTTATGGAAGATGGCAAGCTATTATCGATGACAAAGAGTTGAGAATCCAAGAAGTTGTCTGTAAAGAGCTGAATCTTCCTTCCATAACTTTACCTGTGCCTGGAGCTTCTCAGCCGCAAGTTCCTCCTGCTCCTGGAGCTTCTCAGGCGCTTCCCGCTTCAGGGGTTTCACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGTCTGAATACAGTTAATGCTGGAACTACTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGCACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAATATCAGAGAGAAGTTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCGGAAAACCTCATGAACTGCCTGGGAAAGAGATGGAGTGTGACACCAAGATTGTAGACGAACCAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392586" ref_strand="+" ref_description="SGN-E392586 [TUS-35-B13]">
      <seq>ctcccacaagggagaaggtgaagtatcaacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcaagcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctaaagcattagccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatgcatcgagagcggcttctaacggttcaaggaacattagatccttttaaccccgctggtccaataatacaacgtaaatataataaggaattagatcgggaaaatttagctaaaatggtttctgtttgtggtttgccttatagttttccttcaaatcccggttttgtcgaatatattcaacaaacttataatccggattatagaggcttttcaagaaatactgtcaaaactgatgtttttgaacatcaaggtaaacattgtcaatttcttcgttgtctatttagcatagtaaatagtagagtgtctattacttcggacatgggtcgtagtgttaatggaaatgatcatttaacagtaactgcacattggattgatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="139316" stop="140556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139616" g_stop="140256" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E392586" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139616" e_stop="140256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACAAGGGAGAAGGTGAAGTATCAACGCCCTAAAACTTATATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAGTGTTGCTATTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGGAC-GGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAAGGAATTTCAATTGATGAATTTGATATTACCGGTAGTGCATCGGTAGGGGCTTCTCACATAGTTCAAGGAACATTAGATCTTTCTAGCCCCGGTGGTCCAATAACACAACGTAAATATAATAAGGAATTTGATCGCGAAAATTTAGCTAAAATGGTTTCTGTTTGTAGTTTGCCTTATAGTTTTACTTCATATCCCGATTTTATTGAATAAATTTAACAAACTTATAATCCGAATTATAGAGG-TTTTCAAGAAATACTGTTAAACATGATGTTTTTGAATTTCAAGGTAAACATTGTTAATTTCTTCGTTGTATATTTAGCATATTATATAGTAGAGTGTCTATAACTACGGATATGGGTCGTAGTGTCAATGGAAATGATTATTTAACTGTTTCAACTCATTGGATTGATCATA</genome_strand>
        <mrna_strand>CTCCCACAAGGGAGAAGGTGAAGTATCAACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTA-TTTGTAATAAGTGTAAGCAAGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAATGAATTAGATATTACCGGTAATGCATCGAGAGCGGCTTCT-A-ACGGTTCAAGGAACATTAGATCCTTTTAACCCCGCTGGTCCAATAATACAACGTAAATATAATAAGGAATTAGATCGGGAAAATTTAGCTAAAATGGTTTCTGTTTGTGGTTTGCCTTATAGTTTTCCTTCAAATCCCGGTTTTGTCGAATATATTCAACAAACTTATAATCCGGATTATAGAGGCTTTTCAAGAAATACTGTCAAAACTGATGTTTTTGAACATCAAGGTAAACATTGTCAATTTCTTCGTTGTCTATTTAGCATAGTAAATAGTAGAGTGTCTATTACTTCGGACATGGGTCGTAGTGTTAATGGAAATGATCATTTAACAGTAACTGCACATTGGATTGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392581" ref_strand="+" ref_description="SGN-E392581 [TUS-35-B7]">
      <seq>ctcccacaagggagaaggtgaagtatcaacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcaagcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctaaagcattagccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatgcatcgagagcggcttctaacggttcaaggaacattagatccttttaaccccgctggtccaataatacaacgtaaatataataaggaattagatcgggaaaatttagctaaaatggtttctgtttgtggtttgccttatagttttccttcaaatcccggttttgtcgaatatattcaacaaacttataatccggattatagaggcttttcaagaaatactgtcaaaactgatgtttttgaacatcaaggtaaacattgtcaatttcttcgttgtctatttagcataatagatagtaaagtgtctattacttcggacatgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="139316" stop="140502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139616" g_stop="140202" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E392581" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139616" e_stop="140202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACAAGGGAGAAGGTGAAGTATCAACGCCCTAAAACTTATATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAGTGTTGCTATTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGGAC-GGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAAGGAATTTCAATTGATGAATTTGATATTACCGGTAGTGCATCGGTAGGGGCTTCTCACATAGTTCAAGGAACATTAGATCTTTCTAGCCCCGGTGGTCCAATAACACAACGTAAATATAATAAGGAATTTGATCGCGAAAATTTAGCTAAAATGGTTTCTGTTTGTAGTTTGCCTTATAGTTTTACTTCATATCCCGATTTTATTGAATAAATTTAACAAACTTATAATCCGAATTATAGAGG-TTTTCAAGAAATACTGTTAAACATGATGTTTTTGAATTTCAAGGTAAACATTGTTAATTTCTTCGTTGTATATTTAGCATATTATATAGTAGAGTGTCTATAACTACGGATATGGGTC</genome_strand>
        <mrna_strand>CTCCCACAAGGGAGAAGGTGAAGTATCAACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTA-TTTGTAATAAGTGTAAGCAAGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAATGAATTAGATATTACCGGTAATGCATCGAGAGCGGCTTCT-A-ACGGTTCAAGGAACATTAGATCCTTTTAACCCCGCTGGTCCAATAATACAACGTAAATATAATAAGGAATTAGATCGGGAAAATTTAGCTAAAATGGTTTCTGTTTGTGGTTTGCCTTATAGTTTTCCTTCAAATCCCGGTTTTGTCGAATATATTCAACAAACTTATAATCCGGATTATAGAGGCTTTTCAAGAAATACTGTCAAAACTGATGTTTTTGAACATCAAGGTAAACATTGTCAATTTCTTCGTTGTCTATTTAGCATAATAGATAGTAAAGTGTCTATTACTTCGGACATGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274195" ref_strand="+" ref_description="SGN-E274195 [cLEN-8-D4]">
      <seq>tcccacaagggagaaggtgaagtatccacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcatgcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctgaagcattatccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatgcatcgagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="139317" stop="140188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139617" g_stop="139889" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E274195" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139617" e_stop="139889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACAAGGGAGAAGGTGAAGTATCAACGCCCTAAAACTTATATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAGTGTTGCTATTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGGAC-GGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAAGGAATTTCAATTGATGAATTTGATATTACCGGTAGTGCATCGGTAGG</genome_strand>
        <mrna_strand>TCCCACAAGGGAGAAGGTGAAGTATCCACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTA-TTTGTAATAAGTGTAAGCATGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTGAAGCATTATCCAATAGAAAAAAGGGAATTTCAATTAATGAATTAGATATTACCGGTAATGCATCGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274025" ref_strand="+" ref_description="SGN-E274025 [cLEN-8-D3]">
      <seq>tcccacaagggagaaggtgaagtatcaacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcaagcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctaaagcattagccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="139317" stop="140179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139617" g_stop="139879" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E274025" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139617" e_stop="139879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACAAGGGAGAAGGTGAAGTATCAACGCCCTAAAACTTATATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAGTGTTGCTATTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGGAC-GGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAAGGAATTTCAATTGATGAATTTGATATTACCGGTAGTG</genome_strand>
        <mrna_strand>TCCCACAAGGGAGAAGGTGAAGTATCAACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTA-TTTGTAATAAGTGTAAGCAAGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAATGAATTAGATATTACCGGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378787" ref_strand="+" ref_description="SGN-E378787 [TUS-35-B7]">
      <seq>caacgacctaaaacttctattgtgtggcaatttatgacttacgataaagaaaatagtgttgctatttgtaataagtgtaagcaagcttttaaacataaacaaggtgggggtcaaggtggaacggggggattaaatagacatttgttatcttgtgtgccgattcaatataaagaagctaaagcattagccaatagaaaaaagggaatttcaattaatgaattagatattaccggtaatgcatcgagagcggcttctaacggttcaaggaacattagatccttttaaccccgctggtccaataatacaacgtaaatataataaggaattagatcgggaaaatttagctaaaatggtttctgtttgtggtttgccttatagttttccttcaaatcccggttttgtcgaatatattcaacaaacttataatccggattatagaggcttttcaagaaatactgtcaaaactgatgtttttgaacatcaaggtaaacattgtcaatttcttcgttgtctatttagcatagtagatagtagagtgtctattacttcggacatgggtcgtagtgttaatggaaatgatcatttaacagtaactgcacattggattgatcataattggaatttgcaaaaaagaattatatgttataaactatgtatagagaaaaaaactggtgcatatttagcttcaaatattttaagtgttttagattattacatgattatagataaaataatgtctgtcgcattagataatgcatctaataatacaaatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="139342" stop="140718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139642" g_stop="140418" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E378787" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139642" e_stop="140418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCCCTAAAACTTATATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAGTGTTGCTATTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGGAC-GGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAAGGAATTTCAATTGATGAATTTGATATTACCGGTAGTGCATCGGTAGGGGCTTCTCACATAGTTCAAGGAACATTAGATCTTTCTAGCCCCGGTGGTCCAATAACACAACGTAAATATAATAAGGAATTTGATCGCGAAAATTTAGCTAAAATGGTTTCTGTTTGTAGTTTGCCTTATAGTTTTACTTCATATCCCGATTTTATTGAATAAATTTAACAAACTTATAATCCGAATTATAGAGG-TTTTCAAGAAATACTGTTAAACATGATGTTTTTGAATTTCAAGGTAAACATTGTTAATTTCTTCGTTGTATATTTAGCATATTATATAGTAGAGTGTCTATAACTACGGATATGGGTCGTAGTGTCAATGGAAATGATTATTTAACTGTTTCAACTCATTGGATTGATCATAATTGGAATTTGCAAAAAAGAATATTAAGTTATACACTATGTGTAGAG-AAAAAACTGGTGCATACTTAGCTTCAAAAATTTTAAGTGTTTTAGATTATTACATGGTTACAGATAAAGTAATGTCTGTTGCATTAGATAATGCATCTAACAATACAAACGCTTC</genome_strand>
        <mrna_strand>CAACGACCTAAAACTTCTATTGTGTGGCAATTTATGACTTACGATAAAGAAAATAGTGTTGCTA-TTTGTAATAAGTGTAAGCAAGCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAGGGAATTTCAATTAATGAATTAGATATTACCGGTAATGCATCGAGAGCGGCTTCT-A-ACGGTTCAAGGAACATTAGATCCTTTTAACCCCGCTGGTCCAATAATACAACGTAAATATAATAAGGAATTAGATCGGGAAAATTTAGCTAAAATGGTTTCTGTTTGTGGTTTGCCTTATAGTTTTCCTTCAAATCCCGGTTTTGTCGAATATATTCAACAAACTTATAATCCGGATTATAGAGGCTTTTCAAGAAATACTGTCAAAACTGATGTTTTTGAACATCAAGGTAAACATTGTCAATTTCTTCGTTGTCTATTTAGCATAGTAGATAGTAGAGTGTCTATTACTTCGGACATGGGTCGTAGTGTTAATGGAAATGATCATTTAACAGTAACTGCACATTGGATTGATCATAATTGGAATTTGCAAAAAAGAATTATATGTTATAAACTATGTATAGAGAAAAAAACTGGTGCATATTTAGCTTCAAATATTTTAAGTGTTTTAGATTATTACATGATTATAGATAAAATAATGTCTGTCGCATTAGATAATGCATCTAATAATACAAATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262684" ref_strand="+" ref_description="SGN-E262684 [cLEG-63-K3]">
      <seq>tattatcctactatttcatccgtattaataaatatttgtgctctttcaattcaattttctaaatataaaaaaatagatcactttagagttgcaattgaaggtatgattgaaaaatttaaaaaatatttttttcctattcctcaagtttttttaacggctactttacttcatcctgcttataaattacaaggtgtgaaaggccttgtcgacactttttatgaaactttagaagttttaccggaagaaactccagattgtgaaacgtgtaagtatagcataaaaatagaagcaaaaattttgtatgaaaaatatagaactagtgaaaattttgaaggagaagttgctcaaacttctaatgttgagattgatttgtcagttccaatttcatgttatatgcgaggttttcttggtcttaattctactaaccgtgatgattttgaagaatatcttaatcaatctttagaaaacttggaaatcaaagatggcaatgaagatttattaggatggtggagtagacgaagcgatgcatttccaactttgagcaaaatggttcgtgatattctagctattcaagcttcatcagttgcatcagaggctgctttcagtgcggcaaggtttcaaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="140548" stop="141772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140848" g_stop="141472" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E262684" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140848" e_stop="141472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATCCTACTATTTTATCAGTATTAATAAATATTTGTGCTCTTACAATTCAATTTTCTAAATATAAAAAAATAGATAAATTTAAAGTTGCAATTGAAGGTATGATTGAAAAATTAAAAAAATATTTTTTTCTTATTCCTCAAATTTATTTAACTGCTACTTTACTTTCATCCTGATTATAAATTACGAGGTGTGCAGGGCCTTATTGACACTTTTTGTGAAACTTAAGAAATTTTACCTAAAGAAATTCCAAATTGTGAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAAATTTTGTATAAAAAATATAGAACTAGTGAAAATATTGAAGGAGAAGTTGGTCAAACTTCTAATCAAGATATTGATTTTGAAGTTCGAATTTCAACTTATATGAGAGGTTTTCTTTGTCTTAATTCTACTAACCGTGATGATTTAGAAGAATATATTAATCAATCTTTAGAAGTATTTGAAATCAAAGATGGCAATGAAGATTTATTAGGAT-GTGTAGTAGGCGAACCGTTGCATTTCCAACTTTGAGCAAAATGATTTGTGATGTTCTAGTTATTCAAGCTTCATCAGTTGCATTGGATGCTGCTTTCAGTGCGGCAAGGTTTCAAATTG</genome_strand>
        <mrna_strand>TATTATCCTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTTCAATTCAATTTTCTAAATATAAAAAAATAGATCACTTTAGAGTTGCAATTGAAGGTATGATTGAAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAGTTTTTTTAACGGCTACTTTAC-TTCATCCTGCTTATAAATTACAAGGTGTGAAAGGCCTTGTCGACACTTTTTATGAAACTTTAGAAGTTTTACCGGAAGAAACTCCAGATTGTGAAACGTGTAAGTATAGCATAAAAATAGAAGCAAAAATTTTGTATGAAAAATATAGAACTAGTGAAAATTTTGAAGGAGAAGTTGCTCAAACTTCTAATGTTGAGATTGATTTGTCAGTTCCAATTTCATGTTATATGCGAGGTTTTCTTGGTCTTAATTCTACTAACCGTGATGATTTTGAAGAATATCTTAATCAATCTTTAGAAAACTTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGACGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATATTCTAGCTATTCAAGCTTCATCAGTTGCATCAGAGGCTGCTTTCAGTGCGGCAAGGTTTCAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472295" ref_strand="+" ref_description="SGN-E472295 [cSTB-28-A20]">
      <seq>ggccagtgttagctgtacatgggtttatgatgtttctggcttggggaatattgctgccaggtggtattttagctgctagatatttgaaacatatcaagggagatgggtggtttcagattcatgtttatctacagtattctggattatcgatcgtcttccttggctttctctttgctgtagccgaacttcgcggtttgagtttcagctcccttcatgttaagtttggaatgctggccatagttcttgctattgcacagcctatcaatgcatacctacgacctaagaaacctggagcaggggaggaggtttcttcaaaaaggcgtgtttgggagtatatccatgtcattgtgggcaggggtgccattgttgttgggattgcagctcttataactggaatgaagcatttaggagagaggtatggtgacgaagatgttcataggctgatgtgggctttaattctgtggattcttgttggcgttttgacagtgatatatctggagtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="157414" stop="156311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157114" g_stop="156611" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E472295" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157114" e_stop="156611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCAGTGTTAGCTGTACACGGGTTTATGATGTTTCTGGCTTGGGGAATATTGCTGCCAGGTGGTATTTTAGCTGCTAGATATTTGAAACATATCAAGGGAGATGGGTGGTTTCAGATTCATGTTTATCTACAGTATTCCGGATTATCGATTGTCTTCCTTGGTTTTCTCTTTGCTGTAGCCGAACTTCGCGGTTTGAGTTTCAGCTCCCTTCATGTTAAGTTTGGAATGCTGGCCATAGTTCTTGCTATTGCACAACCCATTAATGCATACCTACGACCTAAGAAACCTGGAGCAGGAGAGGAGGTTTCTTCAAACCGGCGTGTTTGGGAGTATATCCATGTCATTGTGGGCAGGGGTGCCATTGTTGTCGGCATTGCAGCTCTTATAACAGGAATGAAGCATCTAGGAGAGAGGTACGGTGATGAAGATGTTCATAGGCTGATGTGGGCTCTAATTCTGTGGATTCTTGTTGGCGTTTTGACAGTGATGTATCTGGAGTATC</genome_strand>
        <mrna_strand>GGCCAGTGTTAGCTGTACATGGGTTTATGATGTTTCTGGCTTGGGGAATATTGCTGCCAGGTGGTATTTTAGCTGCTAGATATTTGAAACATATCAAGGGAGATGGGTGGTTTCAGATTCATGTTTATCTACAGTATTCTGGATTATCGATCGTCTTCCTTGGCTTTCTCTTTGCTGTAGCCGAACTTCGCGGTTTGAGTTTCAGCTCCCTTCATGTTAAGTTTGGAATGCTGGCCATAGTTCTTGCTATTGCACAGCCTATCAATGCATACCTACGACCTAAGAAACCTGGAGCAGGGGAGGAGGTTTCTTCAAAAAGGCGTGTTTGGGAGTATATCCATGTCATTGTGGGCAGGGGTGCCATTGTTGTTGGGATTGCAGCTCTTATAACTGGAATGAAGCATTTAGGAGAGAGGTATGGTGACGAAGATGTTCATAGGCTGATGTGGGCTTTAATTCTGTGGATTCTTGTTGGCGTTTTGACAGTGATATATCTGGAGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706298" ref_strand="+" ref_description="SGN-E706298 [FA29CC09]">
      <seq>cattgaagtccatggatactaagtatgatttgcaattgaatcaaaatgctacaatgagagtgatatgggctttaggtttgataaaacctccggatagtcttcggcctttttatctcccacaaaatcatggtggtagctatgggcacttgacactgaatgtctcggaacatattgatgattgcttggggccgctggatgcagaagataaacaagatcaagaccttgtcattgcagataaaaaaggaccacttgttgtttcaacaggtccagctgtgttctacccaaatcctccaaacccttctaaagttctctacattaacaagaaagaggcaccccttctcagggtagagaggggtgttcaagtaaagttttcaattcaggctgggcatgatgttgccttctatataacctcagatccacttggtggaaatgctacattgaggaatatgtcagagaccatctactttgggggacctgaagcacaaggagttcaagccactcccacagaattagtttgggctcctgaccggaacacgccagatttagtttactatcagtctctatatgctcagaaaatggggtggaaagttcaagtggttgatgcaggcttacctgatatgtataacagcagcgtagttctggatgatcagcaggttacttcttttggacgttggctgaaaattcaatctccattgcagctcgaggggagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="-" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="158539" stop="157226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="158239" g_stop="157526" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="-" ref_id="SGN-E706298" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="158239" e_stop="157526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGAAGTCCATGGATACTAAGTATGATTTGCAATTGAATCAAAATGCTACAATGAGAGTGATATGGGCTTTAGGTTTGATAAAACCTCCGGATAGTCTTCGGCCTTTTTATCTCCCACAAAATCATGGTGGTAGCTATGGGCACTTGACACTGAATGTCTCGGAACATATTGATGATTGCTTGGGGCCGCTGGATGCAGAAGATAAACAAGATCAAGACCTTGTCATTGCAGATAAAAAAGGACCACTTGTTGTTTCAACAGGTCCAGCTGTGTTCTACCCAAATCCTCCAAACCCTTCTAAAGTTCTCTACATTAACAAGAAAGAGGCACCCCTTCTCAGGGTAGAGAGGGGTGTTCAAGTAAAGTTTTCAATTCAGGCTGGGCATGATGTTGCCTTCTATATAACCTCAGATCCACTTGGTGGAAATGCTACATTGAGGAATATGTCAGAGACCATCTACTTTGGGGGACCTGAAGCACAAGGAGTTCAAGCCACTCCCACAGAATTAGTTTGGGCTCCTGACCGGAACACGCCAGATTTAGTTTACTATCAGTCTCTATATGCTCAGAAAATGGGGTGGAAAGTTCAAGTGGTTGATGCAGGCTTACCTGATATGTATAACAGCAGCGTAGTTCTGGATGATCAGCAGGTTACTTTCTTTTGGACGTTGGCTGAAAATTCAATCTCCATTGCAGCTCGAGGGGAGAAAA</genome_strand>
        <mrna_strand>CATTGAAGTCCATGGATACTAAGTATGATTTGCAATTGAATCAAAATGCTACAATGAGAGTGATATGGGCTTTAGGTTTGATAAAACCTCCGGATAGTCTTCGGCCTTTTTATCTCCCACAAAATCATGGTGGTAGCTATGGGCACTTGACACTGAATGTCTCGGAACATATTGATGATTGCTTGGGGCCGCTGGATGCAGAAGATAAACAAGATCAAGACCTTGTCATTGCAGATAAAAAAGGACCACTTGTTGTTTCAACAGGTCCAGCTGTGTTCTACCCAAATCCTCCAAACCCTTCTAAAGTTCTCTACATTAACAAGAAAGAGGCACCCCTTCTCAGGGTAGAGAGGGGTGTTCAAGTAAAGTTTTCAATTCAGGCTGGGCATGATGTTGCCTTCTATATAACCTCAGATCCACTTGGTGGAAATGCTACATTGAGGAATATGTCAGAGACCATCTACTTTGGGGGACCTGAAGCACAAGGAGTTCAAGCCACTCCCACAGAATTAGTTTGGGCTCCTGACCGGAACACGCCAGATTTAGTTTACTATCAGTCTCTATATGCTCAGAAAATGGGGTGGAAAGTTCAAGTGGTTGATGCAGGCTTACCTGATATGTATAACAGCAGCGTAGTTCTGGATGATCAGCAGGTTAC-TTCTTTTGGACGTTGGCTGAAAATTCAATCTCCATTGCAGCTCGAGGGGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345050" ref_strand="+" ref_description="SGN-E345050 [cTOF-22-J14]">
      <seq>aaaagctcacttgttcttctagggtttcacaagatctcttttgcctctgcaaaacacgagcgaattgcgatttctagggttacgatttgtgtttgttcgggtgtttgatggtccgaggagtgatttgagggtataaatcttgattttttctggaagattttgaagagagaaaggaaacgatggcgccttttgacaaagagcttgaagagcagattgctgttgctgggaacaagctgattgagcctccttcttcacttgaagaactcctccgtttgcttgaccaagtagagtcttccctgtctaaagtggagcagtcaccagcgaaatcaatgcatgatgcactttctccattgatgaaggcattggttgcaaatgatctcttgaggcattctgatgttgatgtgaaggtcgcagttgcttcgtgtattagtgagataactagaattactgcaccagacgctccatatgatgacgacaaaatgaaggatatctttcaattaattgtgtcgtcttttgagaatctggatgaccagtctagcagatcttataataagagggtgatgatccttgagacagtggccaaggtcaggtcatgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="169003" stop="173632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="169303" g_stop="169583" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="169584" i_stop="172941" i_length="3358">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="172942" g_stop="173145" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="485" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="173146" i_stop="173218" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="173219" g_stop="173332" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="599" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E345050" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="169303" e_stop="169583"/>
          <exon e_start="172942" e_stop="173145"/>
          <exon e_start="173219" e_stop="173332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTCACTTGTTCTTCTAGGGTTTCACAAGATCTCTTTTGCCTCTGCAAAACACGAGCGAATTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATAAATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGACGTAAGCTTTTTTGTTTATTTTGGTTGTGAATTCTGTTTTTGTATAATCGGTATGATATTTTTTTTAGATTTTTATGTTTAGGTTTTTTTTTTGTTATCTTGAACTATTTCATACCATTTTTGGGCTACTTCGAATTGTTTTAGATGTTTGTTTAAGTAATTCTCGGGTTGAGTTTCTGCTTTTGTATGATGCTCCGCTTTACTTTAGAGCTAATTAGGGCTAGATTCAAAGAATAAAACTTGGAAGCCTACAAAATAATTGAACTATGTGTTGACTCCAGGGCATTGAACCTGAGCATCCCACATCTGGGAGATATGTGTACACCCTTGACTGGTGACCTCTGCTCTAGGTTTTGTCAAAGGGTGTTCAAAATTCTATATATACAAATAAAAACTAGTATTTAAGGCTAATGATGTTCGGCTGATTACCCTAGTACCGCCGCAGCTGTGCCCTTGTTGATTACCCTAGCACCGCCATAGCTATGCCCTTATTGATTACCCTAGCACTGCTGTAGCTCTGCCCTTGTTGATTACCCTAGCACCGCCGTAGCTATGCCCTTGTTGATTACCCTAGCACCGCTGTAGCTCTGCCCTTGTTGATTACCCTAGATCTGCCCTTGTTGAACACTGTTATCAACTTCTAATTTATTTTGATAAGGAAGTAAACATTATAAACTATCTTTTGGTTGAAAGCTTAACTTTTATTCAGCCAGTATGGAAATAGTACACCAGTTAGCTATTCTAATTTCTCACTCTTTTACAATCCTCATTAAGCTAGCTATTCTATCAGTTTCTACTCTACAATTCTAGCTATCTGTCTAATCTTTGAAGCCCCCCCCCCCCCCACCACACCACACCACACACTTACACTTGGTCTGGTGTTGTCCTTTTGTGTGAAGTTGGGGATGATTCCTCTGGATCTATGCTTGCATTCCTGCTGGTGTTGTTGAAATATTCTAGCATTCTGCTCAATCCAGACATGGTAAATGCATGCATTGAACAGCCAGCCTAGCATGTGTAATTCTGCTTTCCTTTGTTTCACTCTGTGCGTCAACTATTGGATCTCAGCCTCCCAATTTTAGTGATTCAAAATATGATTTAAAAAAGCCCTTCTTGATTGGTAACAGCCTTACCAATATCTTCACAAGTTAGTGGTAGGTCTACAGACACACCACCCTCCCTAGACCCAACTTGTGGGATTACAGTGGTAATGTTGTTGTCGTTTCTCTTTCTTGTGATGTATACGATGTTATCCCCCAGGACAGTATTTTGATTCTTACTCTATATAGAGCCCTTGAATACTGTTATTAGCTTTTGATTTGTTTTGATAGTGAGGTAGAAACTGACTTCTTTTAATTATTCTAAATATGATTAAAAATCTTTCTTTATTTGTTATCCTCCACCCTGGATGATTGCCATATGTTCCCTCTCCTCTTGTTTGATGCAAGTCCTTTACTATTCTTCAAATTTAATTCTTAATGGCCTACCCGCTGTTTCAGTTTGCATTGAGTTGAATTATCCTGCTTAATGAAAGTATTGCTTTTAAAATTCATGCTTTTCCTAATGTTTCTTTTAAATTTATTTTGATATTTGTTGTCTCTGCCTATTTGGAAATATTTTGGCATGTCTTTTTTATAAGTAATTTCTGTATTCTGGTAATTTTTCATTTTTTCCTGTTAACTGGTGGTCTCTGTTTAGAGTCTGGTTTAAACTATCTTGAAGCATTATGGTTTGCAATTGATGGGCATTGCCACTAGGGCCACTCTTTTTTCATGACTCCCCTGTGGGATGTGGAATATTACTGGGTATGTTGTTGCATGTGATGTATACATTAGTCGCAACTTTTTGTTTGGGTCCTAGAGTTTTGTGGTTTGCTAGTGAGACATATGAGCATGTCCATAGTTAAATAATTTGAACAGGATGTAGTCTGTGTAATCTTGACATCTCCTGGCGGAGCTTTTTATTTTTGATAATTGTTTCAAATGATGGTATCTGAAAATTCCAGAGAGATAATTGGGTTGGCGGGTAATAAGTACACCATTCTTTTTATTTGATAAGTGCCTGACAATTTGTAGGAAAGGGAAAATGAAAAAAATGGAAGAAGTAGTATATACTCTTGGAATCTCTGGGTATTAAATAACAGTCAATATTTATGCTGAAAGATAGCAAGGCTGTGGGCATGCTGTGTGTTTCCCCTGTGAGGCTCTTCTAGTTGTACTTGAAAATCCCGTTGGCTTTTCCTGGAGGGTTTCTCAAGGAGCAGAGTATGGGCAATATTAGTTTTCTTTCTGAAGTGGTGATTTTCTTATGCAAATGGTTTATTGATTTAACCCCCCATCTTAATTGAGAAGCCACAATGAAATAAGTTTCCTTTTGTGGGTGTCTTCCCCTAGTCAAAGTTAAAATGCATAGATTTGTGTTTAACAATCTCATAAATTAATTGTCATTTTACTTTTTAGAGAAAATCTGACTGTGCATCTTCGTATTGCTGGTTAAAGAACGATAAACAGTGACAGATACTAATTTGGAACCATGAGTTTCCTGGTATTTCCTTGATAACAAGCTGATGCAGACCACCTGTTTTTGGTGATAAAATTGATACTTTATGAATACGTCCTTTAGATTATTGTTTAGAAGATTTGGTTTGTGTGATTTTATGCTGCCATAATTCTTTTGGGAAAATACAAAAACCTTTAGCCTGTATGGATAAAATTGGGGCCAGCTGATTGTCATCACTTAATCGATGTGCGAGACTCTGAGGTACCTTAACATGATCTGTAGTAAAAAGGATCAAGTTGACTGTTATTCCCCTTTTTCTAATCAATGTGCGAGACTCTGAGGTACCTTAACATGATCTGTAGTAAAAAGGATCAAGTTGGCTGTTATTCCCCTTTTTCTTTAAAGTGGGTCATTGACTTCTAGATAGGAGATCTTTTTTCTTCTATAAATTTGTTTGGAATTTAACCCTGCAGTAGTATGGTTGGTTACATGGAGAAAAGGAAAAGCTAGAGTTTTTGAACTTAAGGAAGGACAGTGTAATTAACCATGGGTCGGAGTTTATATTCTTGCTTAGTTTTAGTGGTGGAGACTTGGTTGACTTAGCAGGTCCTTTACACTTGCTGACTTTTTTTTTTTGATGTACTCTTTTCCCATCATTGCAGATATTTCATACATTACCCATATATCAATAGATACTGTTGGTATAACAAAACAGAAGTTATTTTGAACCGTTTGTTTTGGCAGATTTTTGGTTTCACTGTTAATTTTGCAATTAACATATAATGTTTCATTTGCTGAAACTCATGCACGGTCTTTTTCTTGCCTAATCTTAATATACTTTTGGTTTTTTCTGCTTTAAGCAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAGGTATGAGAAATCTGCTTTCTCATTCTCCTTCCTTCTATCAGTCCTTCAATAACATTCCATTTATTTGATACAGGATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTT</genome_strand>
        <mrna_strand>AAAAGCTCACTTGTTCTTCTAGGGTTTCACAAGATCTCTTTTGCCTCTGCAAAACACGAGCGAATTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATAAATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAG.........................................................................GATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737359" ref_strand="+" ref_description="SGN-E737359 [LC09CA06]">
      <seq>ccctttttcgcaagatctcttttgcctctgcaaacacgagcgacttgcgatttctagggttacgatttgtgtttgttcgggtgtttgatggtccgaggagtgatttgagggtatacatcttgattttttctggaagattttgaagagagaaaggaaacgatggcgccttttgacaaagagcttgaagagcagattgctgttgctgggaacaagctgattgagcctccttcttcacttgaagaactcctccgtttgcttgaccaagtagagtcttccctgtctaaagtggagcagtcaccagcgaaatcaatgcatgatgcactttctccattgatgaaggcattggttgcaaatgatctcttgaggcattctgatgttgatgtgaaggtcgcagttgcttcgtgtattagtgagataactacaattactgcaccagacgctccatatgatgacgacaaaatgaaggatatctttcaattaattgtgtcgtcttttgagaatctggatgaccagtctagcagatcttataataagagggtgatgatccttgagacagtggccaaggtcaggtcatgtgttgtcatgctggatctagaatgtgatgggctcatcgctgagatgtttcaccacttccttacagctatcagagaggatcactctgaaaatgttttttcatccatggcaacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0030C09-8TuGG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0030C09.1" temp_strand="+" temp_description="C00SLm0030C09.1  CU326372.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0030C09 sequenced_by:sanger upload_account_name:uk">
        <position start="169027" stop="173713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="169325" g_stop="169583" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="261" r_length="258" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="169584" i_stop="172941" i_length="3358">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="172942" g_stop="173145" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="465" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="173146" i_stop="173218" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="173219" g_stop="173400" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="647" r_length="182" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0030C09.1" gen_strand="+" ref_id="SGN-E737359" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0030C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="169325" e_stop="169583"/>
          <exon e_start="172942" e_stop="173145"/>
          <exon e_start="173219" e_stop="173400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCACAAGATCTCTTTTGCCTCTGCAAAACACGAGCGAATTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATAAATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGACGTAAGCTTTTTTGTTTATTTTGGTTGTGAATTCTGTTTTTGTATAATCGGTATGATATTTTTTTTAGATTTTTATGTTTAGGTTTTTTTTTTGTTATCTTGAACTATTTCATACCATTTTTGGGCTACTTCGAATTGTTTTAGATGTTTGTTTAAGTAATTCTCGGGTTGAGTTTCTGCTTTTGTATGATGCTCCGCTTTACTTTAGAGCTAATTAGGGCTAGATTCAAAGAATAAAACTTGGAAGCCTACAAAATAATTGAACTATGTGTTGACTCCAGGGCATTGAACCTGAGCATCCCACATCTGGGAGATATGTGTACACCCTTGACTGGTGACCTCTGCTCTAGGTTTTGTCAAAGGGTGTTCAAAATTCTATATATACAAATAAAAACTAGTATTTAAGGCTAATGATGTTCGGCTGATTACCCTAGTACCGCCGCAGCTGTGCCCTTGTTGATTACCCTAGCACCGCCATAGCTATGCCCTTATTGATTACCCTAGCACTGCTGTAGCTCTGCCCTTGTTGATTACCCTAGCACCGCCGTAGCTATGCCCTTGTTGATTACCCTAGCACCGCTGTAGCTCTGCCCTTGTTGATTACCCTAGATCTGCCCTTGTTGAACACTGTTATCAACTTCTAATTTATTTTGATAAGGAAGTAAACATTATAAACTATCTTTTGGTTGAAAGCTTAACTTTTATTCAGCCAGTATGGAAATAGTACACCAGTTAGCTATTCTAATTTCTCACTCTTTTACAATCCTCATTAAGCTAGCTATTCTATCAGTTTCTACTCTACAATTCTAGCTATCTGTCTAATCTTTGAAGCCCCCCCCCCCCCCACCACACCACACCACACACTTACACTTGGTCTGGTGTTGTCCTTTTGTGTGAAGTTGGGGATGATTCCTCTGGATCTATGCTTGCATTCCTGCTGGTGTTGTTGAAATATTCTAGCATTCTGCTCAATCCAGACATGGTAAATGCATGCATTGAACAGCCAGCCTAGCATGTGTAATTCTGCTTTCCTTTGTTTCACTCTGTGCGTCAACTATTGGATCTCAGCCTCCCAATTTTAGTGATTCAAAATATGATTTAAAAAAGCCCTTCTTGATTGGTAACAGCCTTACCAATATCTTCACAAGTTAGTGGTAGGTCTACAGACACACCACCCTCCCTAGACCCAACTTGTGGGATTACAGTGGTAATGTTGTTGTCGTTTCTCTTTCTTGTGATGTATACGATGTTATCCCCCAGGACAGTATTTTGATTCTTACTCTATATAGAGCCCTTGAATACTGTTATTAGCTTTTGATTTGTTTTGATAGTGAGGTAGAAACTGACTTCTTTTAATTATTCTAAATATGATTAAAAATCTTTCTTTATTTGTTATCCTCCACCCTGGATGATTGCCATATGTTCCCTCTCCTCTTGTTTGATGCAAGTCCTTTACTATTCTTCAAATTTAATTCTTAATGGCCTACCCGCTGTTTCAGTTTGCATTGAGTTGAATTATCCTGCTTAATGAAAGTATTGCTTTTAAAATTCATGCTTTTCCTAATGTTTCTTTTAAATTTATTTTGATATTTGTTGTCTCTGCCTATTTGGAAATATTTTGGCATGTCTTTTTTATAAGTAATTTCTGTATTCTGGTAATTTTTCATTTTTTCCTGTTAACTGGTGGTCTCTGTTTAGAGTCTGGTTTAAACTATCTTGAAGCATTATGGTTTGCAATTGATGGGCATTGCCACTAGGGCCACTCTTTTTTCATGACTCCCCTGTGGGATGTGGAATATTACTGGGTATGTTGTTGCATGTGATGTATACATTAGTCGCAACTTTTTGTTTGGGTCCTAGAGTTTTGTGGTTTGCTAGTGAGACATATGAGCATGTCCATAGTTAAATAATTTGAACAGGATGTAGTCTGTGTAATCTTGACATCTCCTGGCGGAGCTTTTTATTTTTGATAATTGTTTCAAATGATGGTATCTGAAAATTCCAGAGAGATAATTGGGTTGGCGGGTAATAAGTACACCATTCTTTTTATTTGATAAGTGCCTGACAATTTGTAGGAAAGGGAAAATGAAAAAAATGGAAGAAGTAGTATATACTCTTGGAATCTCTGGGTATTAAATAACAGTCAATATTTATGCTGAAAGATAGCAAGGCTGTGGGCATGCTGTGTGTTTCCCCTGTGAGGCTCTTCTAGTTGTACTTGAAAATCCCGTTGGCTTTTCCTGGAGGGTTTCTCAAGGAGCAGAGTATGGGCAATATTAGTTTTCTTTCTGAAGTGGTGATTTTCTTATGCAAATGGTTTATTGATTTAACCCCCCATCTTAATTGAGAAGCCACAATGAAATAAGTTTCCTTTTGTGGGTGTCTTCCCCTAGTCAAAGTTAAAATGCATAGATTTGTGTTTAACAATCTCATAAATTAATTGTCATTTTACTTTTTAGAGAAAATCTGACTGTGCATCTTCGTATTGCTGGTTAAAGAACGATAAACAGTGACAGATACTAATTTGGAACCATGAGTTTCCTGGTATTTCCTTGATAACAAGCTGATGCAGACCACCTGTTTTTGGTGATAAAATTGATACTTTATGAATACGTCCTTTAGATTATTGTTTAGAAGATTTGGTTTGTGTGATTTTATGCTGCCATAATTCTTTTGGGAAAATACAAAAACCTTTAGCCTGTATGGATAAAATTGGGGCCAGCTGATTGTCATCACTTAATCGATGTGCGAGACTCTGAGGTACCTTAACATGATCTGTAGTAAAAAGGATCAAGTTGACTGTTATTCCCCTTTTTCTAATCAATGTGCGAGACTCTGAGGTACCTTAACATGATCTGTAGTAAAAAGGATCAAGTTGGCTGTTATTCCCCTTTTTCTTTAAAGTGGGTCATTGACTTCTAGATAGGAGATCTTTTTTCTTCTATAAATTTGTTTGGAATTTAACCCTGCAGTAGTATGGTTGGTTACATGGAGAAAAGGAAAAGCTAGAGTTTTTGAACTTAAGGAAGGACAGTGTAATTAACCATGGGTCGGAGTTTATATTCTTGCTTAGTTTTAGTGGTGGAGACTTGGTTGACTTAGCAGGTCCTTTACACTTGCTGACTTTTTTTTTTTGATGTACTCTTTTCCCATCATTGCAGATATTTCATACATTACCCATATATCAATAGATACTGTTGGTATAACAAAACAGAAGTTATTTTGAACCGTTTGTTTTGGCAGATTTTTGGTTTCACTGTTAATTTTGCAATTAACATATAATGTTTCATTTGCTGAAACTCATGCACGGTCTTTTTCTTGCCTAATCTTAATATACTTTTGGTTTTTTCTGCTTTAAGCAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAGGTATGAGAAATCTGCTTTCTCATTCTCCTTCCTTCTATCAGTCCTTCAATAACATTCCATTTATTTGATACAGGATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTTGTCATGCTGGATCTAGAATGTGATGGGCTCATCGCTGAGATGTTTCAGCACTTCCTTAAAGCTATAAG</genome_strand>
        <mrna_strand>TTTTTCGCAAGATCTCTTTTGCCTCTGC-AAACACGAGCGACTTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATACATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTACAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAG.........................................................................GATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTTGTCATGCTGGATCTAGAATGTGATGGGCTCATCGCTGAGATGTTTCACCACTTCCTTACAGCTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>103</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2965" PGL_stop="7838"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2965" e_stop="3523"/>
            <exon e_start="4671" e_stop="5041"/>
            <exon e_start="5616" e_stop="5852"/>
            <exon e_start="7151" e_stop="7838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2965" e_stop="3523" e_length="559"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.830">
            <gDNA_intron_boundary i_start="3524" i_stop="4670" i_length="1147"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4671" e_stop="5041" e_length="371"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="5042" i_stop="5615" i_length="574"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5616" e_stop="5852" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="5853" i_stop="7150" i_length="1298"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="7151" e_stop="7838" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2965" stop="3469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3410" stop="3523"/>
              <exon start="4671" stop="5041"/>
              <exon start="5616" stop="5799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3410" stop="3523"/>
              <exon start="4671" stop="5041"/>
              <exon start="5616" stop="5788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3493" stop="3523"/>
              <exon start="4671" stop="5041"/>
              <exon start="5616" stop="5852"/>
              <exon start="7151" stop="7305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3494" stop="3523"/>
              <exon start="4671" stop="5041"/>
              <exon start="5616" stop="5765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5807" stop="5852"/>
              <exon start="7151" stop="7838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435615" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTAATAGCAGCCGACAAAATTAAGAATGAGGCACATTCTATTTCGTGTTCCTCCTCCAACCAACACCTCCCACTTCCCTCTGCCCCCCTTACCCCCAAACTACAATCCTCTACATATACATATCTGTATCTAACTCTTAGTATTGCTTCAAGAAAGTTTGATTCAACTTGTAAATTTTCAATTTTGAAAGTTGGGTACTTGTTTTTTTTTGAATTGGGGTTAGCTCCATGTGGGATTCTTGAATTTTGATTTGATGAATTTCCTTCCAAGATGTTTGAGTTACAGTGAATGTAGTGGTGGAGCTGGAAGAAGTGAAATTAGGGGTGGTGAAAGTTCCAATGGTGGATTTGGGAAAGATGGGTTGTTGTGGTTTCATGATATTGGGAATTGTGGGAGTGGGGAATATTCCATGGCTATTGTGCAAGCTAATCAGGTCTTAGAGGATCAGAGCCAGATTGAGTCTGGTCCATTTGGAACTTTTGTTGGAGTCTATGATGGTCATGGTGGACCTGAAACTGCTCGTTATGTTTGTGATCACTTATTTCGACATTTCCAAG : CAATATCAGCTGAAGGAAATGGTGTAGTCACAGAGGAGACAATTCAAAGGGCCTTTCTTGAGACAGAGAGAGGGTTTACTTCTGTTGTTTCGGAAAATTGGCATTCTCGACCACAACTAGCAACAGTGGGGGCATGCTGCCTGGTTGGAGCTATATATCAGCAGACACTCTTTGTAGCAAATCTTGGTGACTCTCGTGTAGTCCTTGGAAAGAAGGTTGGAAACACTGGAGAAATTGCTGCCATGCAGCTATCAACGGAGCATAATGCCAATATTGAGTCTGTTAGGTGGGAGCAAAAAGACTTGCATCCAAATGATCCTCAAATTGTTGTTCTTAGACATGGTGTTTGGAGGGTAAAAGGAATAATTCAG : GTCTCAAGATCCATTGGTGATGTTTATCTTAAACACACAAGATTTTGCAGGGAACCAACAAATGGAAAATTCAGAGTTCCTCAACCCCTTAATATGCCTATCCTGTTGGCCACTCCAACAATTTTAAAACATCCTCTACATCCAAATGACTCCTTCCTCATATTTGCTTCTGATGGTCTATGGGAGCACTTGAGCAATGAAAAGGCCGTTGAAATTGTGAAGAGTCACCCTCGTAAA : GGAAGTGCAAAGAGGCTTGTCAAGGCTGCTCTCCATGTAGCTGCCAAAAAAAGAGAGATGCGATATTCTGATCTTCGAAACATTGACAAAAAGGTCCGACGTCATTTTCACGATGATATAACTGTAATTATTTTATTCTTAAACCATGACCTGATATGTAGAGGCGTTGTGCAAGATCCAACACTTTCTATTCGGAGTGCTTTAGAACACTGATTGTTGAAGGAATATATTATTTTTTACTAGTGCCTGAGGTTCTGTCACAACACCAAAATTTTCCTTGATATGCGGCTCCGGAGCAGCATCAGTGAAGCAACTACACTGTATGAGAGTGTTTTTTTCCTTTGAAGAGGCTTATAATTTGAATTTCTCAAACCTTGTTATAGGTGGAGTTCAAGAAGAATGCTAATTCAAAAGTTTCGGATACAGTCAACCTCTATGTAACAGCCTTGTTTCATTATTAATTTGTTCTGTACACTAGTTTTTATTTTGGATTCTGGAGTATTTTGTTAATTTCTTGCAACATTATCGCCTGTTACAAGTGTAAAAAGGAAAAAGTTCGCCACAAGAGAATGATGGCTTTTGAATTAAAAGAGGATGCTGCTGCGGTCTTATCGTTTAATTGGAAGAACTTTATTTCCCTTAGAAGAGAACAATTGTTTGACCAATCAAACGAGCTCGCTTGAATTTA</gDNA_template>
            <first_frame> C  *  *  Q  P  T  K  L  R  M  R  H  I  L  F  R  V  P  P  P  T  N  T  S  H  F  P  L  P  P  L  P  P  N  Y  N  P  L  H  I  H  I  C  I  *  L  L  V  L  L  Q  E  S  L  I  Q  L  V  N  F  Q  F  *  K  L  G  T  C  F  F  L  N  W  G  *  L  H  V  G  F  L  N  F  D  L  M  N  F  L  P  R  C  L  S  Y  S  E  C  S  G  G  A  G  R  S  E  I  R  G  G  E  S  S  N  G  G  F  G  K  D  G  L  L  W  F  H  D  I  G  N  C  G  S  G  E  Y  S  M  A  I  V  Q  A  N  Q  V  L  E  D  Q  S  Q  I  E  S  G  P  F  G  T  F  V  G  V  Y  D  G  H  G  G  P  E  T  A  R  Y  V  C  D  H  L  F  R  H  F  Q   : A  I  S  A  E  G  N  G  V  V  T  E  E  T  I  Q  R  A  F  L  E  T  E  R  G  F  T  S  V  V  S  E  N  W  H  S  R  P  Q  L  A  T  V  G  A  C  C  L  V  G  A  I  Y  Q  Q  T  L  F  V  A  N  L  G  D  S  R  V  V  L  G  K  K  V  G  N  T  G  E  I  A  A  M  Q  L  S  T  E  H  N  A  N  I  E  S  V  R  W  E  Q  K  D  L  H  P  N  D  P  Q  I  V  V  L  R  H  G  V  W  R  V  K  G  I  I  Q  :  V  S  R  S  I  G  D  V  Y  L  K  H  T  R  F  C  R  E  P  T  N  G  K  F  R  V  P  Q  P  L  N  M  P  I  L  L  A  T  P  T  I  L  K  H  P  L  H  P  N  D  S  F  L  I  F  A  S  D  G  L  W  E  H  L  S  N  E  K  A  V  E  I  V  K  S  H  P  R  K  :  G  S  A  K  R  L  V  K  A  A  L  H  V  A  A  K  K  R  E  M  R  Y  S  D  L  R  N  I  D  K  K  V  R  R  H  F  H  D  D  I  T  V  I  I  L  F  L  N  H  D  L  I  C  R  G  V  V  Q  D  P  T  L  S  I  R  S  A  L  E  H  *  L  L  K  E  Y  I  I  F  Y  *  C  L  R  F  C  H  N  T  K  I  F  L  D  M  R  L  R  S  S  I  S  E  A  T  T  L  Y  E  S  V  F  F  L  *  R  G  L  *  F  E  F  L  K  P  C  Y  R  W  S  S  R  R  M  L  I  Q  K  F  R  I  Q  S  T  S  M  *  Q  P  C  F  I  I  N  L  F  C  T  L  V  F  I  L  D  S  G  V  F  C  *  F  L  A  T  L  S  P  V  T  S  V  K  R  K  K  F  A  T  R  E  *  W  L  L  N  *  K  R  M  L  L  R  S  Y  R  L  I  G  R  T  L  F  P  L  E  E  N  N  C  L  T  N  Q  T  S  S  L  E  F  </first_frame>
            <second_frame>  V  N  S  S  R  Q  N  *  E  *  G  T  F  Y  F  V  F  L  L  Q  P  T  P  P  T  S  L  C  P  P  Y  P  Q  T  T  I  L  Y  I  Y  I  S  V  S  N  S  *  Y  C  F  K  K  V  *  F  N  L  *  I  F  N  F  E  S  W  V  L  V  F  F  *  I  G  V  S  S  M  W  D  S  *  I  L  I  *  *  I  S  F  Q  D  V  *  V  T  V  N  V  V  V  E  L  E  E  V  K  L  G  V  V  K  V  P  M  V  D  L  G  K  M  G  C  C  G  F  M  I  L  G  I  V  G  V  G  N  I  P  W  L  L  C  K  L  I  R  S  *  R  I  R  A  R  L  S  L  V  H  L  E  L  L  L  E  S  M  M  V  M  V  D  L  K  L  L  V  M  F  V  I  T  Y  F  D  I  S  K  :  Q  Y  Q  L  K  E  M  V  *  S  Q  R  R  Q  F  K  G  P  F  L  R  Q  R  E  G  L  L  L  L  F  R  K  I  G  I  L  D  H  N  *  Q  Q  W  G  H  A  A  W  L  E  L  Y  I  S  R  H  S  L  *  Q  I  L  V  T  L  V  *  S  L  E  R  R  L  E  T  L  E  K  L  L  P  C  S  Y  Q  R  S  I  M  P  I  L  S  L  L  G  G  S  K  K  T  C  I  Q  M  I  L  K  L  L  F  L  D  M  V  F  G  G  *  K  E  *  F  R :   S  Q  D  P  L  V  M  F  I  L  N  T  Q  D  F  A  G  N  Q  Q  M  E  N  S  E  F  L  N  P  L  I  C  L  S  C  W  P  L  Q  Q  F  *  N  I  L  Y  I  Q  M  T  P  S  S  Y  L  L  L  M  V  Y  G  S  T  *  A  M  K  R  P  L  K  L  *  R  V  T  L  V  K :   E  V  Q  R  G  L  S  R  L  L  S  M  *  L  P  K  K  E  R  C  D  I  L  I  F  E  T  L  T  K  R  S  D  V  I  F  T  M  I  *  L  *  L  F  Y  S  *  T  M  T  *  Y  V  E  A  L  C  K  I  Q  H  F  L  F  G  V  L  *  N  T  D  C  *  R  N  I  L  F  F  T  S  A  *  G  S  V  T  T  P  K  F  S  L  I  C  G  S  G  A  A  S  V  K  Q  L  H  C  M  R  V  F  F  S  F  E  E  A  Y  N  L  N  F  S  N  L  V  I  G  G  V  Q  E  E  C  *  F  K  S  F  G  Y  S  Q  P  L  C  N  S  L  V  S  L  L  I  C  S  V  H  *  F  L  F  W  I  L  E  Y  F  V  N  F  L  Q  H  Y  R  L  L  Q  V  *  K  G  K  S  S  P  Q  E  N  D  G  F  *  I  K  R  G  C  C  C  G  L  I  V  *  L  E  E  L  Y  F  P  *  K  R  T  I  V  *  P  I  K  R  A  R  L  N  L </second_frame>
            <third_frame>   L  I  A  A  D  K  I  K  N  E  A  H  S  I  S  C  S  S  S  N  Q  H  L  P  L  P  S  A  P  L  T  P  K  L  Q  S  S  T  Y  T  Y  L  Y  L  T  L  S  I  A  S  R  K  F  D  S  T  C  K  F  S  I  L  K  V  G  Y  L  F  F  F  E  L  G  L  A  P  C  G  I  L  E  F  *  F  D  E  F  P  S  K  M  F  E  L  Q  *  M  *  W  W  S  W  K  K  *  N  *  G  W  *  K  F  Q  W  W  I  W  E  R  W  V  V  V  V  S  *  Y  W  E  L  W  E  W  G  I  F  H  G  Y  C  A  S  *  S  G  L  R  G  S  E  P  D  *  V  W  S  I  W  N  F  C  W  S  L  *  W  S  W  W  T  *  N  C  S  L  C  L  *  S  L  I  S  T  F  P  S :   N  I  S  *  R  K  W  C  S  H  R  G  D  N  S  K  G  L  S  *  D  R  E  R  V  Y  F  C  C  F  G  K  L  A  F  S  T  T  T  S  N  S  G  G  M  L  P  G  W  S  Y  I  S  A  D  T  L  C  S  K  S  W  *  L  S  C  S  P  W  K  E  G  W  K  H  W  R  N  C  C  H  A  A  I  N  G  A  *  C  Q  Y  *  V  C  *  V  G  A  K  R  L  A  S  K  *  S  S  N  C  C  S  *  T  W  C  L  E  G  K  R  N  N  S   : G  L  K  I  H  W  *  C  L  S  *  T  H  K  I  L  Q  G  T  N  K  W  K  I  Q  S  S  S  T  P  *  Y  A  Y  P  V  G  H  S  N  N  F  K  T  S  S  T  S  K  *  L  L  P  H  I  C  F  *  W  S  M  G  A  L  E  Q  *  K  G  R  *  N  C  E  E  S  P  S  *   : R  K  C  K  E  A  C  Q  G  C  S  P  C  S  C  Q  K  K  R  D  A  I  F  *  S  S  K  H  *  Q  K  G  P  T  S  F  S  R  *  Y  N  C  N  Y  F  I  L  K  P  *  P  D  M  *  R  R  C  A  R  S  N  T  F  Y  S  E  C  F  R  T  L  I  V  E  G  I  Y  Y  F  L  L  V  P  E  V  L  S  Q  H  Q  N  F  P  *  Y  A  A  P  E  Q  H  Q  *  S  N  Y  T  V  *  E  C  F  F  P  L  K  R  L  I  I  *  I  S  Q  T  L  L  *  V  E  F  K  K  N  A  N  S  K  V  S  D  T  V  N  L  Y  V  T  A  L  F  H  Y  *  F  V  L  Y  T  S  F  Y  F  G  F  W  S  I  L  L  I  S  C  N  I  I  A  C  Y  K  C  K  K  E  K  V  R  H  K  R  M  M  A  F  E  L  K  E  D  A  A  A  V  L  S  F  N  W  K  N  F  I  S  L  R  R  E  Q  L  F  D  Q  S  N  E  L  A  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3190" stop="3523"/>
                    <exon start="4671" stop="5041"/>
                    <exon start="5616" stop="5852"/>
                    <exon start="7151" stop="7363"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHVGFLNFDLMNFLPRCLSYSECSGGAGRSEIRGGESSNGGFGKDGLLWFHDIGNCGSGEYSMAIVQANQVLEDQSQIESGPFGTFVGVYDGHGGPETARYVCDHLFRHFQAISAEGNGVVTEETIQRAFLETERGFTSVVSENWHSRPQLATVGACCLVGAIYQQTLFVANLGDSRVVLGKKVGNTGEIAAMQLSTEHNANIESVRWEQKDLHPNDPQIVVLRHGVWRVKGIIQVSRSIGDVYLKHTRFCREPTNGKFRVPQPLNMPILLATPTILKHPLHPNDSFLIFASDGLWEHLSNEKAVEIVKSHPRKGSAKRLVKAALHVAAKKREMRYSDLRNIDKKVRRHFHDDITVIILFLNHDLICRGVVQDPTLSIRSALEH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2967" stop="3215"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIAADKIKNEAHSISCSSSNQHLPLPSAPLTPKLQSSTYTYLYLTLSIASRKFDSTCKFSILKVGYLFFFELGLAPCGILEF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7612" stop="7833"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVLYTSFYFGFWSILLISCNIIACYKCKKEKVRHKRMMAFELKEDAAAVLSFNWKNFISLRREQLFDQSNELA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="18543" PGL_stop="16697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18543" e_stop="17456"/>
            <exon e_start="16832" e_stop="16697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.635" acc_prob="0.212" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18543" e_stop="17456" e_length="1088"/>
          </exon>
          <intron i_serial="1" don_prob="0.635" acc_prob="0.212">
            <gDNA_intron_boundary i_start="17455" i_stop="16833" i_length="623"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16832" e_stop="16697" e_length="136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18543" stop="17906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18543" stop="17906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18542" stop="18000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18542" stop="18261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18490" stop="17925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18490" stop="17926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18387" stop="17700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18387" stop="17914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17953" stop="17456"/>
              <exon start="16832" stop="16697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342927" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAAGTTAGTGACTACTATGGCAGACAAGATGAGGGAAGAAATTAAGATAGTTCGGACATGTGAAGAGGAGGTGTGCGGATGCACCAATAAAAAGGTGTGAGAGGCTGACTATGAGAACACACCGTTTCTGCGAAGAAGGTATGTAAGACAGAGGTTTCCTAACAAACGATATTCTCCTTCTCTTGATTACTTGTTACTAACAGATTCAGTCAGCTTAGCTGTTTTGATAAGGCAATGCAGGTTGATAGCAAGTTCAAGTGGATTGAGGAAATGATGAAGTGTACTCACTCCACATAAATCAAAGTTGGGGGTTGGTCAAACTACCAGAAGGGAATAAGACAATCCAGAATAATGTATGTACAGGATGAAACAGAAGCATAATAGTTCAATGAAATATAAAGCAAGGTTGGTAATAAAAGGTTTTCAACAAAAGGCATGTATCAATTTACTGAGATTTTCTCCCTTGTGATTAAATTACCTACTATTCGAGTTGCTTTAGAATTGCTGTAGCATAAGATTTATATTTAGAGCATTTAGATGTAAGGACAGCCTCTCTTTATGATGATCAACATGAAAGACGTGTATGCGTAGCAACCTGAAGTGTACATACAGGCTGATAAGAAAAATATGGTGCGTAGACTGAAGAAGAGTCTCTATGGTTTGAAACAAGCACCAAGACCATACTTAAAGTTTGGCAGGTTTATGATGACTATTGGCTTACTTGGTATAATGATGATCACTGTTCTTACTTCAAGAAATTTATAAATTCGTACATCACTTTGCTCCTGTATATGGATGATATGTTGGTGACAGGTTAAAACATGTGTGGGATCACAAAACTGAAGGAGCAAATGTCTAGTGAATTTTTTGATAAAGAATTTGGGACTGGAAATTGAAAGAGACAGGTTGAAGCTGAGTCAGAAGAAATAGATTGAAAAAATAATTCTTAAAGAGGCTAAACATTTGGGATGCCAAGTTGGTGCACTTCAAGAAAATCTGAAAGCAAGTCCTTTGGCAGGTCACTTGAATTGGGATTGTTTTTGGCAAGCGTAGAAGTTAACTTTGTTTGAAAGAAAGAATCTTGAG : ACACAGGTTTCATAGAGGAGCAGATTACAAAGTGTTGCTTTATTGCAGAAGTTGATTTGGTGAGCTCCACCCTTCACCGTGGAATTTCTTCTTTTTTCAGTTAGAATTTTTTTTAATTCAGTTTTTGGGGAATAGC</gDNA_template>
            <first_frame> R  K  L  V  T  T  M  A  D  K  M  R  E  E  I  K  I  V  R  T  C  E  E  E  V  C  G  C  T  N  K  K  V  *  E  A  D  Y  E  N  T  P  F  L  R  R  R  Y  V  R  Q  R  F  P  N  K  R  Y  S  P  S  L  D  Y  L  L  L  T  D  S  V  S  L  A  V  L  I  R  Q  C  R  L  I  A  S  S  S  G  L  R  K  *  *  S  V  L  T  P  H  K  S  K  L  G  V  G  Q  T  T  R  R  E  *  D  N  P  E  *  C  M  Y  R  M  K  Q  K  H  N  S  S  M  K  Y  K  A  R  L  V  I  K  G  F  Q  Q  K  A  C  I  N  L  L  R  F  S  P  L  *  L  N  Y  L  L  F  E  L  L  *  N  C  C  S  I  R  F  I  F  R  A  F  R  C  K  D  S  L  S  L  *  *  S  T  *  K  T  C  M  R  S  N  L  K  C  T  Y  R  L  I  R  K  I  W  C  V  D  *  R  R  V  S  M  V  *  N  K  H  Q  D  H  T  *  S  L  A  G  L  *  *  L  L  A  Y  L  V  *  *  *  S  L  F  L  L  Q  E  I  Y  K  F  V  H  H  F  A  P  V  Y  G  *  Y  V  G  D  R  L  K  H  V  W  D  H  K  T  E  G  A  N  V  *  *  I  F  *  *  R  I  W  D  W  K  L  K  E  T  G  *  S  *  V  R  R  N  R  L  K  K  *  F  L  K  R  L  N  I  W  D  A  K  L  V  H  F  K  K  I  *  K  Q  V  L  W  Q  V  T  *  I  G  I  V  F  G  K  R  R  S  *  L  C  L  K  E  R  I  L  R :   H  R  F  H  R  G  A  D  Y  K  V  L  L  Y  C  R  S  *  F  G  E  L  H  P  S  P  W  N  F  F  F  F  Q  L  E  F  F  L  I  Q  F  L  G  N  S </first_frame>
            <second_frame>  G  S  *  *  L  L  W  Q  T  R  *  G  K  K  L  R  *  F  G  H  V  K  R  R  C  A  D  A  P  I  K  R  C  E  R  L  T  M  R  T  H  R  F  C  E  E  G  M  *  D  R  G  F  L  T  N  D  I  L  L  L  L  I  T  C  Y  *  Q  I  Q  S  A  *  L  F  *  *  G  N  A  G  *  *  Q  V  Q  V  D  *  G  N  D  E  V  Y  S  L  H  I  N  Q  S  W  G  L  V  K  L  P  E  G  N  K  T  I  Q  N  N  V  C  T  G  *  N  R  S  I  I  V  Q  *  N  I  K  Q  G  W  *  *  K  V  F  N  K  R  H  V  S  I  Y  *  D  F  L  P  C  D  *  I  T  Y  Y  S  S  C  F  R  I  A  V  A  *  D  L  Y  L  E  H  L  D  V  R  T  A  S  L  Y  D  D  Q  H  E  R  R  V  C  V  A  T  *  S  V  H  T  G  *  *  E  K  Y  G  A  *  T  E  E  E  S  L  W  F  E  T  S  T  K  T  I  L  K  V  W  Q  V  Y  D  D  Y  W  L  T  W  Y  N  D  D  H  C  S  Y  F  K  K  F  I  N  S  Y  I  T  L  L  L  Y  M  D  D  M  L  V  T  G  *  N  M  C  G  I  T  K  L  K  E  Q  M  S  S  E  F  F  D  K  E  F  G  T  G  N  *  K  R  Q  V  E  A  E  S  E  E  I  D  *  K  N  N  S  *  R  G  *  T  F  G  M  P  S  W  C  T  S  R  K  S  E  S  K  S  F  G  R  S  L  E  L  G  L  F  L  A  S  V  E  V  N  F  V  *  K  K  E  S  *   : D  T  G  F  I  E  E  Q  I  T  K  C  C  F  I  A  E  V  D  L  V  S  S  T  L  H  R  G  I  S  S  F  F  S  *  N  F  F  *  F  S  F  W  G  I   </second_frame>
            <third_frame>   E  V  S  D  Y  Y  G  R  Q  D  E  G  R  N  *  D  S  S  D  M  *  R  G  G  V  R  M  H  Q  *  K  G  V  R  G  *  L  *  E  H  T  V  S  A  K  K  V  C  K  T  E  V  S  *  Q  T  I  F  S  F  S  *  L  L  V  T  N  R  F  S  Q  L  S  C  F  D  K  A  M  Q  V  D  S  K  F  K  W  I  E  E  M  M  K  C  T  H  S  T  *  I  K  V  G  G  W  S  N  Y  Q  K  G  I  R  Q  S  R  I  M  Y  V  Q  D  E  T  E  A  *  *  F  N  E  I  *  S  K  V  G  N  K  R  F  S  T  K  G  M  Y  Q  F  T  E  I  F  S  L  V  I  K  L  P  T  I  R  V  A  L  E  L  L  *  H  K  I  Y  I  *  S  I  *  M  *  G  Q  P  L  F  M  M  I  N  M  K  D  V  Y  A  *  Q  P  E  V  Y  I  Q  A  D  K  K  N  M  V  R  R  L  K  K  S  L  Y  G  L  K  Q  A  P  R  P  Y  L  K  F  G  R  F  M  M  T  I  G  L  L  G  I  M  M  I  T  V  L  T  S  R  N  L  *  I  R  T  S  L  C  S  C  I  W  M  I  C  W  *  Q  V  K  T  C  V  G  S  Q  N  *  R  S  K  C  L  V  N  F  L  I  K  N  L  G  L  E  I  E  R  D  R  L  K  L  S  Q  K  K  *  I  E  K  I  I  L  K  E  A  K  H  L  G  C  Q  V  G  A  L  Q  E  N  L  K  A  S  P  L  A  G  H  L  N  W  D  C  F  W  Q  A  *  K  L  T  L  F  E  R  K  N  L  E  :  T  Q  V  S  *  R  S  R  L  Q  S  V  A  L  L  Q  K  L  I  W  *  A  P  P  F  T  V  E  F  L  L  F  S  V  R  I  F  F  N  S  V  F  G  E  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0030C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17446" e_stop="17292"/>
            <exon e_start="17241" e_stop="17105"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.942"/>
          <exon-only e_score="0.876"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="17446" e_stop="17292" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17291" i_stop="17242" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.876">
            <gDNA_exon_boundary e_start="17241" e_stop="17105" e_length="137"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17446" stop="17292"/>
              <exon start="17241" stop="17105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTTGTTCTTACTAAAGTTCTTTCCTGAAGAGATCATGTCCCATAAGTTATTTGAATTAATGTTTCTAAAGTATTAATGTGAGCTAAACTGGAATGAGTGAGCTCACATTGCGCATCATTGAATGAGTCTTTCTCGTGCTCTATTTTCTGCTTT : GGTAACTCTTTTCAGCCCTAAAACAGTACCTAATTCCCTGGAAAGATGACCAAGAAAAGACAACATATCCCATCAAGAATTGTGTCGTCTTTCATAGTGACAACAGCCATAATGTACTCTCTTATGCATGGTTATGA</gDNA_template>
            <first_frame> D  L  F  L  L  K  F  F  P  E  E  I  M  S  H  K  L  F  E  L  M  F  L  K  Y  *  C  E  L  N  W  N  E  *  A  H  I  A  H  H  *  M  S  L  S  R  A  L  F  S  A  L :   V  T  L  F  S  P  K  T  V  P  N  S  L  E  R  *  P  R  K  D  N  I  S  H  Q  E  L  C  R  L  S  *  *  Q  Q  P  *  C  T  L  L  C  M  V  M  </first_frame>
            <second_frame>  T  C  S  Y  *  S  S  F  L  K  R  S  C  P  I  S  Y  L  N  *  C  F  *  S  I  N  V  S  *  T  G  M  S  E  L  T  L  R  I  I  E  *  V  F  L  V  L  Y  F  L  L   : W  *  L  F  S  A  L  K  Q  Y  L  I  P  W  K  D  D  Q  E  K  T  T  Y  P  I  K  N  C  V  V  F  H  S  D  N  S  H  N  V  L  S  Y  A  W  L  * </second_frame>
            <third_frame>   L  V  L  T  K  V  L  S  *  R  D  H  V  P  *  V  I  *  I  N  V  S  K  V  L  M  *  A  K  L  E  *  V  S  S  H  C  A  S  L  N  E  S  F  S  C  S  I  F  C  F  :  G  N  S  F  Q  P  *  N  S  T  *  F  P  G  K  M  T  K  K  R  Q  H  I  P  S  R  I  V  S  S  F  I  V  T  T  A  I  M  Y  S  L  M  H  G  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0030C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="21493" PGL_stop="20136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21493" e_stop="20263"/>
            <exon e_start="20144" e_stop="20136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21493" e_stop="20263" e_length="1231"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20262" i_stop="20145" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="0.889">
            <gDNA_exon_boundary e_start="20144" e_stop="20136" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21493" stop="20732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21434" stop="20751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21434" stop="21002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21434" stop="21009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21433" stop="20930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21432" stop="21013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21430" stop="20894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21427" stop="20553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21425" stop="20747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21425" stop="20889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21425" stop="20905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21425" stop="20968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21424" stop="21105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21423" stop="20856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21423" stop="21020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21418" stop="20761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21360" stop="20768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21278" stop="20802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21278" stop="20809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20988" stop="20508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20972" stop="20263"/>
              <exon start="20144" stop="20136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20932" stop="20524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559089" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTCTCCCACCTATAAATTTACCCTTCGACACTCGCTAGGTTTGCCAAACTGAAAAGCCTTAGGGCACTTTTTAAGAGATCTATACAAACAGAAATTGTTTATATAGATCTTCACTGAAAATGGCGAATTCCTCTAGAAGGCCGAGTGGGCCAGTGTTGCTTAAATCGGCGTTTGAGAGGTCAATCTCACCTACCGGCAGGTTCTGTAACACCACCACCACAGCAACTGATGCGATGTCGTTCGCTTCGTACAGCAACTCTAGCTTTTATTCCTCTCCGTCGACCGGCTGTTTCAACCGATCGGCTTCTCCGACGCGCGTGAATCTTCACGCTCTGGCGCCGGTGAATTCTTCGCCTAGCGTTAGGTTCTCCATTGACAGATCCATTTCTCCTCGGCGTTCCATGGCGGTGTCTCAACGTGATCAGGTGGTTCGGAAGCAGATCCCGAAGAGGACGTGCTTATGCTCACCTACGACGCATCCTGGTTCGTTCAGGTGTAGTATGCATAAGAATGTGAAGAATACTCCTTCGATTTCGTATTCCCCTAGCCGATTGAATGCACGGAGATCGGCGATGACAAATTCACTGGTGCGTATCTGTTCTGTTGAAGGTGATTTAGTGAAACGAGCTTTGGCTGCTCTTATTAGGCCATCGTCGCATCATCAGAGACGTCGAGGTGACTTTCAACCGCGTCCTAGCCGGCTTTCCAGAATGTCCAAAGCTGATAACCTGTGAAATTTCCGTGGTAACAGGTTGGTGATTTTCATATATTAACTGAGGCTCATCTCTTGAGAGTTTTCCGGCGGCGGCGTCTGATCCTGGCTGCGGTTCTTACTACTCCGGTGAAATGAAAGCTGTAGGGCAATTTTGATGCAGTATGGAAGTAGTAGAATTCTCCCTTGTACATATGGTTTTGTTGCAGTAACTGATTGCAATTGAAAGGACAATTTGGACTTTTAAAATCTAATTAAACCGATTAAAATTTAAAGCAAAAAAATCAGGAATTCGTAACTTCGATTAAAGATTAATTAACAAATCATGAGTAATTCGTTTGTGGATTTTTCTGATGTTCGATGAAGTGGTGTGACTTGTTTCTCTTTGTGTTCGTTCACAGCCTTTGTGTTTTCCGTCGTGTTTGGCGTTCATCGTTCCGTTTTGCGATGGCATTTCCCGTTCGTTCGCCGTATATGCGTTCGTCCTGTTTTGGCATCTTTGCGTCATCGTTCGAG : GTTCGGCGT</gDNA_template>
            <first_frame> I  F  S  H  L  *  I  Y  P  S  T  L  A  R  F  A  K  L  K  S  L  R  A  L  F  K  R  S  I  Q  T  E  I  V  Y  I  D  L  H  *  K  W  R  I  P  L  E  G  R  V  G  Q  C  C  L  N  R  R  L  R  G  Q  S  H  L  P  A  G  S  V  T  P  P  P  Q  Q  L  M  R  C  R  S  L  R  T  A  T  L  A  F  I  P  L  R  R  P  A  V  S  T  D  R  L  L  R  R  A  *  I  F  T  L  W  R  R  *  I  L  R  L  A  L  G  S  P  L  T  D  P  F  L  L  G  V  P  W  R  C  L  N  V  I  R  W  F  G  S  R  S  R  R  G  R  A  Y  A  H  L  R  R  I  L  V  R  S  G  V  V  C  I  R  M  *  R  I  L  L  R  F  R  I  P  L  A  D  *  M  H  G  D  R  R  *  Q  I  H  W  C  V  S  V  L  L  K  V  I  *  *  N  E  L  W  L  L  L  L  G  H  R  R  I  I  R  D  V  E  V  T  F  N  R  V  L  A  G  F  P  E  C  P  K  L  I  T  C  E  I  S  V  V  T  G  W  *  F  S  Y  I  N  *  G  S  S  L  E  S  F  P  A  A  A  S  D  P  G  C  G  S  Y  Y  S  G  E  M  K  A  V  G  Q  F  *  C  S  M  E  V  V  E  F  S  L  V  H  M  V  L  L  Q  *  L  I  A  I  E  R  T  I  W  T  F  K  I  *  L  N  R  L  K  F  K  A  K  K  S  G  I  R  N  F  D  *  R  L  I  N  K  S  *  V  I  R  L  W  I  F  L  M  F  D  E  V  V  *  L  V  S  L  C  V  R  S  Q  P  L  C  F  P  S  C  L  A  F  I  V  P  F  C  D  G  I  S  R  S  F  A  V  Y  A  F  V  L  F  W  H  L  C  V  I  V  R   : G  S  A  </first_frame>
            <second_frame>  S  S  P  T  Y  K  F  T  L  R  H  S  L  G  L  P  N  *  K  A  L  G  H  F  L  R  D  L  Y  K  Q  K  L  F  I  *  I  F  T  E  N  G  E  F  L  *  K  A  E  W  A  S  V  A  *  I  G  V  *  E  V  N  L  T  Y  R  Q  V  L  *  H  H  H  H  S  N  *  C  D  V  V  R  F  V  Q  Q  L  *  L  L  F  L  S  V  D  R  L  F  Q  P  I  G  F  S  D  A  R  E  S  S  R  S  G  A  G  E  F  F  A  *  R  *  V  L  H  *  Q  I  H  F  S  S  A  F  H  G  G  V  S  T  *  S  G  G  S  E  A  D  P  E  E  D  V  L  M  L  T  Y  D  A  S  W  F  V  Q  V  *  Y  A  *  E  C  E  E  Y  S  F  D  F  V  F  P  *  P  I  E  C  T  E  I  G  D  D  K  F  T  G  A  Y  L  F  C  *  R  *  F  S  E  T  S  F  G  C  S  Y  *  A  I  V  A  S  S  E  T  S  R  *  L  S  T  A  S  *  P  A  F  Q  N  V  Q  S  *  *  P  V  K  F  P  W  *  Q  V  G  D  F  H  I  L  T  E  A  H  L  L  R  V  F  R  R  R  R  L  I  L  A  A  V  L  T  T  P  V  K  *  K  L  *  G  N  F  D  A  V  W  K  *  *  N  S  P  L  Y  I  W  F  C  C  S  N  *  L  Q  L  K  G  Q  F  G  L  L  K  S  N  *  T  D  *  N  L  K  Q  K  N  Q  E  F  V  T  S  I  K  D  *  L  T  N  H  E  *  F  V  C  G  F  F  *  C  S  M  K  W  C  D  L  F  L  F  V  F  V  H  S  L  C  V  F  R  R  V  W  R  S  S  F  R  F  A  M  A  F  P  V  R  S  P  Y  M  R  S  S  C  F  G  I  F  A  S  S  F  E  :  V  R  R </second_frame>
            <third_frame>   L  L  P  P  I  N  L  P  F  D  T  R  *  V  C  Q  T  E  K  P  *  G  T  F  *  E  I  Y  T  N  R  N  C  L  Y  R  S  S  L  K  M  A  N  S  S  R  R  P  S  G  P  V  L  L  K  S  A  F  E  R  S  I  S  P  T  G  R  F  C  N  T  T  T  T  A  T  D  A  M  S  F  A  S  Y  S  N  S  S  F  Y  S  S  P  S  T  G  C  F  N  R  S  A  S  P  T  R  V  N  L  H  A  L  A  P  V  N  S  S  P  S  V  R  F  S  I  D  R  S  I  S  P  R  R  S  M  A  V  S  Q  R  D  Q  V  V  R  K  Q  I  P  K  R  T  C  L  C  S  P  T  T  H  P  G  S  F  R  C  S  M  H  K  N  V  K  N  T  P  S  I  S  Y  S  P  S  R  L  N  A  R  R  S  A  M  T  N  S  L  V  R  I  C  S  V  E  G  D  L  V  K  R  A  L  A  A  L  I  R  P  S  S  H  H  Q  R  R  R  G  D  F  Q  P  R  P  S  R  L  S  R  M  S  K  A  D  N  L  *  N  F  R  G  N  R  L  V  I  F  I  Y  *  L  R  L  I  S  *  E  F  S  G  G  G  V  *  S  W  L  R  F  L  L  L  R  *  N  E  S  C  R  A  I  L  M  Q  Y  G  S  S  R  I  L  P  C  T  Y  G  F  V  A  V  T  D  C  N  *  K  D  N  L  D  F  *  N  L  I  K  P  I  K  I  *  S  K  K  I  R  N  S  *  L  R  L  K  I  N  *  Q  I  M  S  N  S  F  V  D  F  S  D  V  R  *  S  G  V  T  C  F  S  L  C  S  F  T  A  F  V  F  S  V  V  F  G  V  H  R  S  V  L  R  W  H  F  P  F  V  R  R  I  C  V  R  P  V  L  A  S  L  R  H  R  S  R :   F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21416" stop="20757"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIYTNRNCLYRSSLKMANSSRRPSGPVLLKSAFERSISPTGRFCNTTTTATDAMSFASYSNSSFYSSPSTGCFNRSASPTRVNLHALAPVNSSPSVRFSIDRSISPRRSMAVSQRDQVVRKQIPKRTCLCSPTTHPGSFRCSMHKNVKNTPSISYSPSRLNARRSAMTNSLVRICSVEGDLVKRALAALIRPSSHHQRRRGDFQPRPSRLSRMSKADNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20442" PGL_stop="21332"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20442" e_stop="21332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="20442" e_stop="21332" e_length="891"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20442" stop="20646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20539" stop="21332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAATTACTCATGATTTGTTAATTAATCTTTAATCGAAGTTACGAATTCCTGATTTTTTTGCTTTAAATTTTAATCGGTTTAATTAGATTTTAAAAGTCCAAATTGTCCTTTCAATTGCAATCAGTTACTGCAACAAAACCATATGTACAAGGGAGAATTCTACTACTTCCATACTGCATCAAAATTGCCCTACAGCTTTCATTTCACCGGAGTAGTAAGAACCGCAGCCAGGATCAGACGCCGCCGCCGGAAAACTCTCAAGAGATGAGCCTCAGTTAATATATGAAAATCACCAACCTGTTACCACGGAAATTTCACAGGTTATCAGCTTTGGACATTCTGGAAAGCCGGCTAGGACGCGGTTGAAAGTCACCTCGACGTCTCTGATGATGCGACGATGGCCTAATAAGAGCAGCCAAAGCTCGTTTCACTAAATCACCTTCAACAGAACAGATACGCACCAGTGAATTTGTCATCGCCGATCTCCGTGCATTCAATCGGCTAGGGGAATACGAAATCGAAGGAGTATTCTTCACATTCTTATGCATACTACACCTGAACGAACCAGGATGCGTCGTAGGTGAGCATAAGCACGTCCTCTTCGGGATCTGCTTCCGAACCACCTGATCACGTTGAGACACCGCCATGGAACGCCGAGGAGAAATGGATCTGTCAATGGAGAACCTAACGCTAGGCGAAGAATTCACCGGCGCCAGAGCGTGAAGATTCACGCGCGTCGGAGAAGCCGATCGGTTGAAACAGCCGGTCGACGGAGAGGAATAAAAGCTAGAGTTGCTGTACGAAGCGAACGACATCGCATCAGTTGCTGTGGTGGTGGTGTTACAGAACCTGCCGGTAGGTGAGATTGACCTCTCAAACGCCGATTTAAG</gDNA_template>
            <first_frame> R  I  T  H  D  L  L  I  N  L  *  S  K  L  R  I  P  D  F  F  A  L  N  F  N  R  F  N  *  I  L  K  V  Q  I  V  L  S  I  A  I  S  Y  C  N  K  T  I  C  T  R  E  N  S  T  T  S  I  L  H  Q  N  C  P  T  A  F  I  S  P  E  *  *  E  P  Q  P  G  S  D  A  A  A  G  K  L  S  R  D  E  P  Q  L  I  Y  E  N  H  Q  P  V  T  T  E  I  S  Q  V  I  S  F  G  H  S  G  K  P  A  R  T  R  L  K  V  T  S  T  S  L  M  M  R  R  W  P  N  K  S  S  Q  S  S  F  H  *  I  T  F  N  R  T  D  T  H  Q  *  I  C  H  R  R  S  P  C  I  Q  S  A  R  G  I  R  N  R  R  S  I  L  H  I  L  M  H  T  T  P  E  R  T  R  M  R  R  R  *  A  *  A  R  P  L  R  D  L  L  P  N  H  L  I  T  L  R  H  R  H  G  T  P  R  R  N  G  S  V  N  G  E  P  N  A  R  R  R  I  H  R  R  Q  S  V  K  I  H  A  R  R  R  S  R  S  V  E  T  A  G  R  R  R  G  I  K  A  R  V  A  V  R  S  E  R  H  R  I  S  C  C  G  G  G  V  T  E  P  A  G  R  *  D  *  P  L  K  R  R  F  K </first_frame>
            <second_frame>  E  L  L  M  I  C  *  L  I  F  N  R  S  Y  E  F  L  I  F  L  L  *  I  L  I  G  L  I  R  F  *  K  S  K  L  S  F  Q  L  Q  S  V  T  A  T  K  P  Y  V  Q  G  R  I  L  L  L  P  Y  C  I  K  I  A  L  Q  L  S  F  H  R  S  S  K  N  R  S  Q  D  Q  T  P  P  P  E  N  S  Q  E  M  S  L  S  *  Y  M  K  I  T  N  L  L  P  R  K  F  H  R  L  S  A  L  D  I  L  E  S  R  L  G  R  G  *  K  S  P  R  R  L  *  *  C  D  D  G  L  I  R  A  A  K  A  R  F  T  K  S  P  S  T  E  Q  I  R  T  S  E  F  V  I  A  D  L  R  A  F  N  R  L  G  E  Y  E  I  E  G  V  F  F  T  F  L  C  I  L  H  L  N  E  P  G  C  V  V  G  E  H  K  H  V  L  F  G  I  C  F  R  T  T  *  S  R  *  D  T  A  M  E  R  R  G  E  M  D  L  S  M  E  N  L  T  L  G  E  E  F  T  G  A  R  A  *  R  F  T  R  V  G  E  A  D  R  L  K  Q  P  V  D  G  E  E  *  K  L  E  L  L  Y  E  A  N  D  I  A  S  V  A  V  V  V  V  L  Q  N  L  P  V  G  E  I  D  L  S  N  A  D  L   </second_frame>
            <third_frame>   N  Y  S  *  F  V  N  *  S  L  I  E  V  T  N  S  *  F  F  C  F  K  F  *  S  V  *  L  D  F  K  S  P  N  C  P  F  N  C  N  Q  L  L  Q  Q  N  H  M  Y  K  G  E  F  Y  Y  F  H  T  A  S  K  L  P  Y  S  F  H  F  T  G  V  V  R  T  A  A  R  I  R  R  R  R  R  K  T  L  K  R  *  A  S  V  N  I  *  K  S  P  T  C  Y  H  G  N  F  T  G  Y  Q  L  W  T  F  W  K  A  G  *  D  A  V  E  S  H  L  D  V  S  D  D  A  T  M  A  *  *  E  Q  P  K  L  V  S  L  N  H  L  Q  Q  N  R  Y  A  P  V  N  L  S  S  P  I  S  V  H  S  I  G  *  G  N  T  K  S  K  E  Y  S  S  H  S  Y  A  Y  Y  T  *  T  N  Q  D  A  S  *  V  S  I  S  T  S  S  S  G  S  A  S  E  P  P  D  H  V  E  T  P  P  W  N  A  E  E  K  W  I  C  Q  W  R  T  *  R  *  A  K  N  S  P  A  P  E  R  E  D  S  R  A  S  E  K  P  I  G  *  N  S  R  S  T  E  R  N  K  S  *  S  C  C  T  K  R  T  T  S  H  Q  L  L  W  W  W  C  Y  R  T  C  R  *  V  R  L  T  S  Q  T  P  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21033" stop="21305"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARPLRDLLPNHLITLRHRHGTPRRNGSVNGEPNARRRIHRRQSVKIHARRRSRSVETAGRRRGIKARVAVRSERHRISCCGGGVTEPAGR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20833" stop="21069"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CDDGLIRAAKARFTKSPSTEQIRTSEFVIADLRAFNRLGEYEIEGVFFTFLCILHLNEPGCVVGEHKHVLFGICFRTT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20661" stop="20876"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPQPGSDAAAGKLSRDEPQLIYENHQPVTTEISQVISFGHSGKPARTRLKVTSTSLMMRRWPNKSSQSSFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="48621" PGL_stop="40950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44027" e_stop="43553"/>
            <exon e_start="42590" e_stop="41682"/>
            <exon e_start="41429" e_stop="40950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.836" acc_prob="0.949" e_score="0.971"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="0.958"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="44027" e_stop="43553" e_length="475"/>
          </exon>
          <intron i_serial="1" don_prob="0.836" acc_prob="0.949">
            <gDNA_intron_boundary i_start="43552" i_stop="42591" i_length="962"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="42590" e_stop="41682" e_length="909"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41681" i_stop="41430" i_length="252"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="41429" e_stop="40950" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44027" stop="43553"/>
              <exon start="42590" stop="42344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43587" stop="43553"/>
              <exon start="42590" stop="41884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42576" stop="41861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42576" stop="42032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42126" stop="41682"/>
              <exon start="41429" stop="41113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41986" stop="41682"/>
              <exon start="41429" stop="41216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41900" stop="41682"/>
              <exon start="41429" stop="41419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41900" stop="41682"/>
              <exon start="41429" stop="41420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41836" stop="41682"/>
              <exon start="41429" stop="40950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41713" stop="41682"/>
              <exon start="41429" stop="40979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597736" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGATGTGGATAATCTTCTAGTGGGAGCAGCTCAAGGACTTGTGCTGTCTGACCCTTTCCGCTGTTGTGGGTCACCAAAGTTGAAAAATGTTACGATTCCAAATATTTCGGTGGTCCCCCCGTTGCCATTGCTTATATCACGTGTTGTGGGTAGTGATGGTGCTATAATTTTATATGAAGGAGAGATTCGTGAAGTACAGATAAGTGTGGCCAATGCAGGTACAGTTCCGATAGAGCAAGCCCACATCTCATTATCTGGGAAAAATCAAGATTCAATCCAGTTAATTGTTTATGAAACCTTGAAGTCATCCCTTCCTTTGAAGCCCGGTGCTGAAGTGAGAATACCTGTCACTTTAAAGACTTGGCAGCTTGGACTTTTGGATCCGGATGCTGCTCCTAGTAAGAACATATCTGGAAGCACCGGGAGGCAAGTCAAGGATGGATGCAGTCCTGTGCTGCTGATCCACTATGCGG : GTCCACTTACTTATGCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG : GTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGTAATTCCTCCTTATATAGAGGTCCATTTTGTTTAGGAGAAAACTGTATCACTCAGTTTCCAATTGATATACAATAGGATTCTACAGTGATTTGTAAAGCTATATTATTCAATGAAGAGCTGGACATTTATTCCTGCAATTTATAGCTTTATGATTTTGTTGCCT</gDNA_template>
            <first_frame> K  D  V  D  N  L  L  V  G  A  A  Q  G  L  V  L  S  D  P  F  R  C  C  G  S  P  K  L  K  N  V  T  I  P  N  I  S  V  V  P  P  L  P  L  L  I  S  R  V  V  G  S  D  G  A  I  I  L  Y  E  G  E  I  R  E  V  Q  I  S  V  A  N  A  G  T  V  P  I  E  Q  A  H  I  S  L  S  G  K  N  Q  D  S  I  Q  L  I  V  Y  E  T  L  K  S  S  L  P  L  K  P  G  A  E  V  R  I  P  V  T  L  K  T  W  Q  L  G  L  L  D  P  D  A  A  P  S  K  N  I  S  G  S  T  G  R  Q  V  K  D  G  C  S  P  V  L  L  I  H  Y  A   : G  P  L  T  Y  A  G  D  A  S  I  N  G  S  I  P  P  G  R  R  L  V  V  P  L  N  I  C  V  S  Q  G  L  S  L  M  K  A  R  L  L  S  M  E  I  P  A  H  V  G  E  D  H  S  N  V  Q  V  E  T  S  S  A  E  E  S  P  R  T  D  R  F  M  K  I  D  P  Y  R  G  S  W  G  L  R  F  L  E  L  E  L  S  N  P  T  D  V  V  F  E  I  G  V  S  V  N  M  E  D  S  N  N  E  E  N  P  E  Y  D  Y  P  K  T  R  I  D  R  D  Y  T  A  R  V  L  I  P  L  E  H  F  K  L  P  V  L  D  G  T  Y  L  V  K  E  S  Q  M  D  R  T  S  T  R  K  S  S  F  S  E  K  S  S  K  A  E  L  N  A  S  I  K  N  L  I  S  K  I  K  V  R  W  Q  S  G  R  N  N  S  G  E  L  N  I  K  D  A  I  Q  A  A  L  Q  S  S  M  M  D  V  L  L  P  D  P  L  T  F  G  F  R  C  G  N  N  T  S  Q  N  S  S  D  L  N  M  D  E  G  S  N  I  Q  G  A  R  K  G  S  V  K  A  H  D  T  T  P  V  E  V  L  V  R  N  N  T  K  E  M  I  R  V  S  L  S  I  T  C  R  D  I  A  G  E  N  C  V  E  G  D  K  A  T  V  L  W  A   : G  V  L  N  G  I  T  M  E  V  P  P  L  K  E  Y  R  H  S  F  S  L  Y  F  L  V  P  G  E  Y  T  L  L  A  A  A  V  I  D  D  A  N  E  M  L  R  A  R  A  R  A  N  S  C  D  E  S  I  F  C  R  G  P  P  F  H  I  R  V  N  G  T  M  *  Y  P  Y  *  S  V  H  S  L  L  N  Q  V  K  L  S  S  L  N  Y  L  *  N  L  L  F  A  L  R  I  S  C  N  S  S  L  Y  R  G  P  F  C  L  G  E  N  C  I  T  Q  F  P  I  D  I  Q  *  D  S  T  V  I  C  K  A  I  L  F  N  E  E  L  D  I  Y  S  C  N  L  *  L  Y  D  F  V  A  </first_frame>
            <second_frame>  R  M  W  I  I  F  *  W  E  Q  L  K  D  L  C  C  L  T  L  S  A  V  V  G  H  Q  S  *  K  M  L  R  F  Q  I  F  R  W  S  P  R  C  H  C  L  Y  H  V  L  W  V  V  M  V  L  *  F  Y  M  K  E  R  F  V  K  Y  R  *  V  W  P  M  Q  V  Q  F  R  *  S  K  P  T  S  H  Y  L  G  K  I  K  I  Q  S  S  *  L  F  M  K  P  *  S  H  P  F  L  *  S  P  V  L  K  *  E  Y  L  S  L  *  R  L  G  S  L  D  F  W  I  R  M  L  L  L  V  R  T  Y  L  E  A  P  G  G  K  S  R  M  D  A  V  L  C  C  *  S  T  M  R  :  V  H  L  L  M  L  E  M  H  Q  *  M  D  L  F  L  P  V  G  D  W  L  F  P  L  I  Y  V  F  H  R  G  Y  L  L  *  R  L  V  C  Y  Q  W  R  S  L  L  M  L  V  R  I  I  Q  M  F  K  W  K  P  V  L  L  K  N  P  L  V  L  I  G  S  *  K  L  I  L  T  E  E  V  G  A  C  V  S  S  S  L  S  Y  P  I  R  L  M  L  S  S  R  L  A  C  L  S  I  W  R  I  L  T  M  R  R  I  L  S  M  T  I  L  K  Q  G  L  T  E  I  T  L  P  G  C  *  Y  H  *  N  I  L  S  Y  L  F  L  M  V  L  T  W  L  R  S  L  K  W  I  G  P  V  L  E  N  Q  A  S  L  R  K  V  A  K  L  N  L  M  L  P  S  K  I  *  F  L  K  S  K  S  G  G  N  L  A  E  T  I  Q  E  N  *  T  *  K  M  Q  Y  R  L  R  F  N  H  P  *  W  M  Y  Y  Y  L  I  H  *  P  L  G  L  G  V  A  I  I  L  H  K  I  L  L  T  L  I  W  M  K  D  L  I  F  R  V  R  V  K  V  Q  *  K  L  M  T  R  H  Q  *  K  C  W  F  A  I  I  P  R  K  *  L  E  S  V  L  A  S  H  A  E  I  *  L  G  R  T  V  S  R  V  I  K  R  Q  C  Y  G  Q  :  V  F  *  M  V  S  P  W  R  Y  L  H  *  R  N  I  D  I  R  S  P  C  I  S  W  F  Q  V  S  T  H  F  *  L  L  L  *  L  M  M  L  M  K  C  S  E  P  E  Q  E  L  I  H  V  M  S  P  Y  F  V  V  G  H  R  S  I  S  E  *  M  G  L  C  D  I  L  I  E  V  S  I  V  Y  *  T  R  *  N  F  P  A  S  T  I  C  R  T  C  Y  L  H  F  V  F  L  V  I  P  P  Y  I  E  V  H  F  V  *  E  K  T  V  S  L  S  F  Q  L  I  Y  N  R  I  L  Q  *  F  V  K  L  Y  Y  S  M  K  S  W  T  F  I  P  A  I  Y  S  F  M  I  L  L  P </second_frame>
            <third_frame>   G  C  G  *  S  S  S  G  S  S  S  R  T  C  A  V  *  P  F  P  L  L  W  V  T  K  V  E  K  C  Y  D  S  K  Y  F  G  G  P  P  V  A  I  A  Y  I  T  C  C  G  *  *  W  C  Y  N  F  I  *  R  R  D  S  *  S  T  D  K  C  G  Q  C  R  Y  S  S  D  R  A  S  P  H  L  I  I  W  E  K  S  R  F  N  P  V  N  C  L  *  N  L  E  V  I  P  S  F  E  A  R  C  *  S  E  N  T  C  H  F  K  D  L  A  A  W  T  F  G  S  G  C  C  S  *  *  E  H  I  W  K  H  R  E  A  S  Q  G  W  M  Q  S  C  A  A  D  P  L  C  G :   S  T  Y  L  C  W  R  C  I  N  K  W  I  Y  S  S  R  *  A  I  G  C  S  P  *  Y  M  C  F  T  G  V  I  S  Y  E  G  S  F  V  I  N  G  D  P  C  S  C  W  *  G  S  F  K  C  S  S  G  N  Q  F  C  *  R  I  P  S  Y  *  *  V  H  E  N  *  S  L  Q  R  K  L  G  P  A  F  P  R  A  *  V  I  Q  S  D  *  C  C  L  R  D  W  R  V  C  Q  Y  G  G  F  *  Q  *  G  E  S  *  V  *  L  S  *  N  K  D  *  Q  R  L  H  C  Q  G  A  N  T  I  R  T  F  *  V  T  C  S  *  W  Y  L  P  G  *  G  V  S  N  G  *  D  Q  Y  *  K  I  K  L  L  *  E  K  *  Q  S  *  T  *  C  F  H  Q  K  F  N  F  *  N  Q  S  Q  V  A  I  W  P  K  Q  F  R  R  T  K  H  K  R  C  N  T  G  C  A  S  I  I  H  D  G  C  I  T  T  *  S  I  D  L  W  V  *  V  W  Q  *  Y  F  T  K  F  F  *  P  *  Y  G  *  R  I  *  Y  S  G  C  A  *  R  F  S  K  S  S  *  H  D  T  S  R  S  A  G  S  Q  *  Y  Q  G  N  D  *  S  Q  S  *  H  H  M  Q  R  Y  S  W  G  E  L  C  R  G  *  *  S  D  S  A  M  G  R :   C  S  E  W  Y  H  H  G  G  T  S  I  E  G  I  *  T  F  V  L  L  V  F  P  G  S  R  *  V  H  T  F  S  C  C  C  D  *  *  C  *  *  N  A  P  S  Q  S  K  S  *  F  M  *  *  V  H  I  L  S  W  A  T  V  P  Y  P  S  E  W  D  Y  V  I  S  L  L  K  C  P  *  F  T  K  P  G  E  T  F  Q  P  Q  L  F  V  E  L  V  I  C  T  S  Y  F  L  *  F  L  L  I  *  R  S  I  L  F  R  R  K  L  Y  H  S  V  S  N  *  Y  T  I  G  F  Y  S  D  L  *  S  Y  I  I  Q  *  R  A  G  H  L  F  L  Q  F  I  A  L  *  F  C  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44027" stop="43553"/>
                    <exon start="42590" stop="41682"/>
                    <exon start="41429" stop="41209"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1602</number_coding_nucleotides>
                  <number_encoded_amino_acids>534</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDVDNLLVGAAQGLVLSDPFRCCGSPKLKNVTIPNISVVPPLPLLISRVVGSDGAIILYEGEIREVQISVANAGTVPIEQAHISLSGKNQDSIQLIVYETLKSSLPLKPGAEVRIPVTLKTWQLGLLDPDAAPSKNISGSTGRQVKDGCSPVLLIHYAGPLTYAGDASINGSIPPGRRLVVPLNICVSQGLSLMKARLLSMEIPAHVGEDHSNVQVETSSAEESPRTDRFMKIDPYRGSWGLRFLELELSNPTDVVFEIGVSVNMEDSNNEENPEYDYPKTRIDRDYTARVLIPLEHFKLPVLDGTYLVKESQMDRTSTRKSSFSEKSSKAELNASIKNLISKIKVRWQSGRNNSGELNIKDAIQAALQSSMMDVLLPDPLTFGFRCGNNTSQNSSDLNMDEGSNIQGARKGSVKAHDTTPVEVLVRNNTKEMIRVSLSITCRDIAGENCVEGDKATVLWAGVLNGITMEVPPLKEYRHSFSLYFLVPGEYTLLAAAVIDDANEMLRARARANSCDESIFCRGPPFHIRVNGTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46952" e_stop="46794"/>
            <exon e_start="42590" e_stop="41682"/>
            <exon e_start="41429" e_stop="40950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="0.958"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46952" e_stop="46794" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.949">
            <gDNA_intron_boundary i_start="46793" i_stop="42591" i_length="4203"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="42590" e_stop="41682" e_length="909"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41681" i_stop="41430" i_length="252"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="41429" e_stop="40950" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46952" stop="46794"/>
              <exon start="42590" stop="42030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42576" stop="41861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42576" stop="42032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42126" stop="41682"/>
              <exon start="41429" stop="41113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41986" stop="41682"/>
              <exon start="41429" stop="41216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41900" stop="41682"/>
              <exon start="41429" stop="41419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41900" stop="41682"/>
              <exon start="41429" stop="41420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41836" stop="41682"/>
              <exon start="41429" stop="40950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41713" stop="41682"/>
              <exon start="41429" stop="40979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597736" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG : GTCCACTTACTTATGCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG : GTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGTAATTCCTCCTTATATAGAGGTCCATTTTGTTTAGGAGAAAACTGTATCACTCAGTTTCCAATTGATATACAATAGGATTCTACAGTGATTTGTAAAGCTATATTATTCAATGAAGAGCTGGACATTTATTCCTGCAATTTATAGCTTTATGATTTTGTTGCCT</gDNA_template>
            <first_frame> S  S  Y  C  M  E  C  S  S  T  S  S  *  V  L  L  S  S  Y  N  T  C  W  A  K  W  S  C  E  C  T  F  K  C  V  *  E  T  S  L  R  N  S  L  C  *  S  C  I  A  F  Y  K  :  V  H  L  L  M  L  E  M  H  Q  *  M  D  L  F  L  P  V  G  D  W  L  F  P  L  I  Y  V  F  H  R  G  Y  L  L  *  R  L  V  C  Y  Q  W  R  S  L  L  M  L  V  R  I  I  Q  M  F  K  W  K  P  V  L  L  K  N  P  L  V  L  I  G  S  *  K  L  I  L  T  E  E  V  G  A  C  V  S  S  S  L  S  Y  P  I  R  L  M  L  S  S  R  L  A  C  L  S  I  W  R  I  L  T  M  R  R  I  L  S  M  T  I  L  K  Q  G  L  T  E  I  T  L  P  G  C  *  Y  H  *  N  I  L  S  Y  L  F  L  M  V  L  T  W  L  R  S  L  K  W  I  G  P  V  L  E  N  Q  A  S  L  R  K  V  A  K  L  N  L  M  L  P  S  K  I  *  F  L  K  S  K  S  G  G  N  L  A  E  T  I  Q  E  N  *  T  *  K  M  Q  Y  R  L  R  F  N  H  P  *  W  M  Y  Y  Y  L  I  H  *  P  L  G  L  G  V  A  I  I  L  H  K  I  L  L  T  L  I  W  M  K  D  L  I  F  R  V  R  V  K  V  Q  *  K  L  M  T  R  H  Q  *  K  C  W  F  A  I  I  P  R  K  *  L  E  S  V  L  A  S  H  A  E  I  *  L  G  R  T  V  S  R  V  I  K  R  Q  C  Y  G  Q  :  V  F  *  M  V  S  P  W  R  Y  L  H  *  R  N  I  D  I  R  S  P  C  I  S  W  F  Q  V  S  T  H  F  *  L  L  L  *  L  M  M  L  M  K  C  S  E  P  E  Q  E  L  I  H  V  M  S  P  Y  F  V  V  G  H  R  S  I  S  E  *  M  G  L  C  D  I  L  I  E  V  S  I  V  Y  *  T  R  *  N  F  P  A  S  T  I  C  R  T  C  Y  L  H  F  V  F  L  V  I  P  P  Y  I  E  V  H  F  V  *  E  K  T  V  S  L  S  F  Q  L  I  Y  N  R  I  L  Q  *  F  V  K  L  Y  Y  S  M  K  S  W  T  F  I  P  A  I  Y  S  F  M  I  L  L  P </first_frame>
            <second_frame>  P  L  T  A  W  S  A  A  A  R  L  L  R  S  Y  Y  P  L  I  T  P  A  G  Q  N  G  L  A  S  A  L  S  N  A  S  E  R  L  P  S  G  T  R  C  A  D  P  A  L  P  F  I  R :   S  T  Y  L  C  W  R  C  I  N  K  W  I  Y  S  S  R  *  A  I  G  C  S  P  *  Y  M  C  F  T  G  V  I  S  Y  E  G  S  F  V  I  N  G  D  P  C  S  C  W  *  G  S  F  K  C  S  S  G  N  Q  F  C  *  R  I  P  S  Y  *  *  V  H  E  N  *  S  L  Q  R  K  L  G  P  A  F  P  R  A  *  V  I  Q  S  D  *  C  C  L  R  D  W  R  V  C  Q  Y  G  G  F  *  Q  *  G  E  S  *  V  *  L  S  *  N  K  D  *  Q  R  L  H  C  Q  G  A  N  T  I  R  T  F  *  V  T  C  S  *  W  Y  L  P  G  *  G  V  S  N  G  *  D  Q  Y  *  K  I  K  L  L  *  E  K  *  Q  S  *  T  *  C  F  H  Q  K  F  N  F  *  N  Q  S  Q  V  A  I  W  P  K  Q  F  R  R  T  K  H  K  R  C  N  T  G  C  A  S  I  I  H  D  G  C  I  T  T  *  S  I  D  L  W  V  *  V  W  Q  *  Y  F  T  K  F  F  *  P  *  Y  G  *  R  I  *  Y  S  G  C  A  *  R  F  S  K  S  S  *  H  D  T  S  R  S  A  G  S  Q  *  Y  Q  G  N  D  *  S  Q  S  *  H  H  M  Q  R  Y  S  W  G  E  L  C  R  G  *  *  S  D  S  A  M  G  R :   C  S  E  W  Y  H  H  G  G  T  S  I  E  G  I  *  T  F  V  L  L  V  F  P  G  S  R  *  V  H  T  F  S  C  C  C  D  *  *  C  *  *  N  A  P  S  Q  S  K  S  *  F  M  *  *  V  H  I  L  S  W  A  T  V  P  Y  P  S  E  W  D  Y  V  I  S  L  L  K  C  P  *  F  T  K  P  G  E  T  F  Q  P  Q  L  F  V  E  L  V  I  C  T  S  Y  F  L  *  F  L  L  I  *  R  S  I  L  F  R  R  K  L  Y  H  S  V  S  N  *  Y  T  I  G  F  Y  S  D  L  *  S  Y  I  I  Q  *  R  A  G  H  L  F  L  Q  F  I  A  L  *  F  C  C   </second_frame>
            <third_frame>   L  L  L  H  G  V  Q  Q  H  V  F  L  G  P  I  I  L  L  *  H  L  L  G  K  M  V  L  R  V  H  F  Q  M  R  L  R  D  F  P  Q  E  L  A  V  L  I  L  H  C  L  L  *   : G  P  L  T  Y  A  G  D  A  S  I  N  G  S  I  P  P  G  R  R  L  V  V  P  L  N  I  C  V  S  Q  G  L  S  L  M  K  A  R  L  L  S  M  E  I  P  A  H  V  G  E  D  H  S  N  V  Q  V  E  T  S  S  A  E  E  S  P  R  T  D  R  F  M  K  I  D  P  Y  R  G  S  W  G  L  R  F  L  E  L  E  L  S  N  P  T  D  V  V  F  E  I  G  V  S  V  N  M  E  D  S  N  N  E  E  N  P  E  Y  D  Y  P  K  T  R  I  D  R  D  Y  T  A  R  V  L  I  P  L  E  H  F  K  L  P  V  L  D  G  T  Y  L  V  K  E  S  Q  M  D  R  T  S  T  R  K  S  S  F  S  E  K  S  S  K  A  E  L  N  A  S  I  K  N  L  I  S  K  I  K  V  R  W  Q  S  G  R  N  N  S  G  E  L  N  I  K  D  A  I  Q  A  A  L  Q  S  S  M  M  D  V  L  L  P  D  P  L  T  F  G  F  R  C  G  N  N  T  S  Q  N  S  S  D  L  N  M  D  E  G  S  N  I  Q  G  A  R  K  G  S  V  K  A  H  D  T  T  P  V  E  V  L  V  R  N  N  T  K  E  M  I  R  V  S  L  S  I  T  C  R  D  I  A  G  E  N  C  V  E  G  D  K  A  T  V  L  W  A   : G  V  L  N  G  I  T  M  E  V  P  P  L  K  E  Y  R  H  S  F  S  L  Y  F  L  V  P  G  E  Y  T  L  L  A  A  A  V  I  D  D  A  N  E  M  L  R  A  R  A  R  A  N  S  C  D  E  S  I  F  C  R  G  P  P  F  H  I  R  V  N  G  T  M  *  Y  P  Y  *  S  V  H  S  L  L  N  Q  V  K  L  S  S  L  N  Y  L  *  N  L  L  F  A  L  R  I  S  C  N  S  S  L  Y  R  G  P  F  C  L  G  E  N  C  I  T  Q  F  P  I  D  I  Q  *  D  S  T  V  I  C  K  A  I  L  F  N  E  E  L  D  I  Y  S  C  N  L  *  L  Y  D  F  V  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46794" stop="41682"/>
                    <exon start="41429" stop="41209"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1128</number_coding_nucleotides>
                  <number_encoded_amino_acids>376</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPLTYAGDASINGSIPPGRRLVVPLNICVSQGLSLMKARLLSMEIPAHVGEDHSNVQVETSSAEESPRTDRFMKIDPYRGSWGLRFLELELSNPTDVVFEIGVSVNMEDSNNEENPEYDYPKTRIDRDYTARVLIPLEHFKLPVLDGTYLVKESQMDRTSTRKSSFSEKSSKAELNASIKNLISKIKVRWQSGRNNSGELNIKDAIQAALQSSMMDVLLPDPLTFGFRCGNNTSQNSSDLNMDEGSNIQGARKGSVKAHDTTPVEVLVRNNTKEMIRVSLSITCRDIAGENCVEGDKATVLWAGVLNGITMEVPPLKEYRHSFSLYFLVPGEYTLLAAAVIDDANEMLRARARANSCDESIFCRGPPFHIRVNGTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45125" e_stop="44523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45125" e_stop="44523" e_length="603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45125" stop="44523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45125" stop="44543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374772" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTG</gDNA_template>
            <first_frame> S  N  P  S  I  H  V  Y  V  N  F  E  *  N  V  L  C  *  I  R  S  M  L  V  M  L  V  F  L  H  G  L  L  Y  *  T  L  L  T  R  S  C  L  K  D  N  Q  I  A  F  V  K  A  G  C  T  S  A  F  I  V  L  H  I  T  Y  *  I  M  P  E  R  C  S  N  Y  L  F  E  G  Q  Y  M  Y  *  P  Y  L  Q  H  I  V  R  S  L  L  I  S  S  *  N  Q  K  N  S  N  S  I  R  N  N  L  F  F  I  I  R  T  I  L  L  M  Y  S  C  S  *  H  T  I  T  N  G  G  K  L  A  K  D  Y  L  E  L  L  S  L  V  S  L  E  R  S  K  F  N  L  V  R  S  S  *  F  L  Q  I  L  L  L  L  V  L  L  F  Q  N  D  L  P  A  Y  *  Y  S  R  F  Y  G  I  C  S  C  W  L  I  S  F  L  R  L  I  L </first_frame>
            <second_frame>  P  I  Q  A  S  M  Y  M  *  I  L  S  E  M  F  Y  A  E  S  E  V  C  W  *  C  W  Y  F  F  M  V  Y  C  I  R  H  C  *  L  D  L  A  *  K  I  I  K  L  P  L  *  R  L  V  V  L  Q  R  L  L  Y  C  T  L  L  T  R  S  C  L  K  D  A  Q  I  T  C  L  K  A  N  T  C  I  D  H  I  F  S  I  *  L  G  V  Y  *  *  A  H  K  I  R  R  I  L  I  P  S  G  I  T  F  F  L  S  *  E  L  F  F  *  C  I  P  V  A  N  I  L  L  L  M  V  V  N  L  Q  K  T  I  W  N  F  F  H  *  S  L  *  K  E  V  N  L  I  W  F  D  L  H  S  S  F  R  F  Y  Y  Y  *  F  C  C  F  R  M  I  F  P  H  T  D  T  L  D  F  M  V  S  A  V  A  G  L  F  L  S  S  D  *  Y   </second_frame>
            <third_frame>   Q  S  K  H  P  C  I  C  K  F  *  V  K  C  S  M  L  N  Q  K  Y  V  G  D  A  G  I  S  S  W  F  I  V  L  D  T  A  N  *  I  L  L  E  R  *  S  N  C  L  C  K  G  W  L  Y  F  S  V  Y  C  I  A  H  Y  L  L  D  H  A  *  K  M  L  K  L  P  V  *  R  P  I  H  V  L  T  I  S  S  A  Y  S  *  E  F  T  D  K  L  I  K  S  E  E  F  *  F  H  Q  E  *  P  F  F  Y  H  K  N  Y  S  F  N  V  F  L  *  L  T  Y  Y  Y  *  W  W  *  T  C  K  R  L  F  G  T  S  F  T  S  L  S  R  K  K  *  I  *  S  G  S  I  F  I  V  P  S  D  F  T  I  I  S  F  A  V  S  E  *  S  S  R  I  L  I  L  *  I  L  W  Y  L  Q  L  L  A  Y  F  F  P  Q  T  D  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0030C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="48621" e_stop="48572"/>
            <exon e_start="47086" e_stop="46794"/>
            <exon e_start="44430" e_stop="44094"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.820" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48621" e_stop="48572" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.940">
            <gDNA_intron_boundary i_start="48571" i_stop="47087" i_length="1485"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47086" e_stop="46794" e_length="293"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.820">
            <gDNA_intron_boundary i_start="46793" i_stop="44431" i_length="2363"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="44430" e_stop="44094" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48621" stop="48572"/>
              <exon start="47086" stop="46794"/>
              <exon start="44430" stop="44094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48621" stop="48572"/>
              <exon start="47086" stop="46794"/>
              <exon start="44430" stop="44127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332851" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAG : GAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG : GTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAA</gDNA_template>
            <first_frame> K  L  I  V  F  K  V  E  P  L  L  T  M  L  F  I  R :   K  V  D  K  I  M  L  M  V  E  K  R  I  T  I  G  *  Y  H  Y  L  N  L  N  G  V  A  F  K  W  L  F  *  G  K  Y  F  Y  Q  L  F  V  V  E  I  L  L  L  H  G  V  Q  Q  H  V  F  L  G  P  I  I  L  L  *  H  L  L  G  K  M  V  L  R  V  H  F  Q  M  R  L  R  D  F  P  Q  E  L  A  V  L  I  L  H  C  L  L  *   : G  C  I  L  F  H  F  I  P  P  N  R  I  *  *  N  V  I  M  G  E  M  I  G  G  Q  G  L  L  L  Q  D  L  L  F  T  H  L  S  A  K  G  S  Q  V  K  A  V  S  R  S  *  F  G  L  W  V  K  Q  Y  K  C  L  L  S  W  Q  I  L  V  V  L  I  *  R  S  I  V  Y  I  Y  L  *  I  L  G  I  L  M  L  F  P  S  V  L  V  C  L  L  I  P  P  K  *  L  H  Y  L  E  F  L  L   </first_frame>
            <second_frame>  S  L  S  C  S  K  *  S  L  Y  *  P  C  S  L  S   : G  K  W  T  K  S  C  *  W  W  K  S  A  S  Q  L  D  S  I  T  I  *  I  S  M  E  *  H  S  N  G  C  F  E  G  N  T  S  I  S  C  S  W  W  R  S  S  Y  C  M  E  C  S  S  T  S  S  *  V  L  L  S  S  Y  N  T  C  W  A  K  W  S  C  E  C  T  F  K  C  V  *  E  T  S  L  R  N  S  L  C  *  S  C  I  A  F  Y  K  :  V  A  F  F  S  T  S  F  L  P  T  G  Y  S  K  T  *  S  W  E  R  *  L  V  G  R  V  C  S  F  R  T  F  Y  L  H  T  F  Q  Q  R  G  A  K  S  K  Q  *  A  G  A  D  L  G  C  G  *  S  S  T  S  V  C  *  V  G  K  S  L  W  F  *  F  E  G  R  *  Y  I  S  I  C  K  F  W  E  F  *  C  F  S  H  Q  C  *  S  A  S  *  F  L  Q  S  D  C  I  I  W  N  S  Y  *  </second_frame>
            <third_frame>   A  Y  R  V  Q  S  R  A  S  T  D  H  A  L  Y  Q  :  E  S  G  Q  N  H  V  D  G  G  K  A  H  H  N  W  I  V  S  L  F  E  S  Q  W  S  S  I  Q  M  V  V  L  R  E  I  L  L  S  A  V  R  G  G  D  P  L  T  A  W  S  A  A  A  R  L  L  R  S  Y  Y  P  L  I  T  P  A  G  Q  N  G  L  A  S  A  L  S  N  A  S  E  R  L  P  S  G  T  R  C  A  D  P  A  L  P  F  I  R :   L  H  S  F  P  L  H  S  S  Q  Q  D  I  V  K  R  N  H  G  R  D  D  W  W  A  G  S  A  P  S  G  P  F  I  Y  T  P  F  S  K  G  E  P  S  Q  S  S  K  Q  E  L  I  W  V  V  G  E  A  V  Q  V  F  V  E  L  A  N  P  C  G  F  D  L  K  V  D  S  I  Y  L  S  V  N  S  G  N  F  D  A  F  P  I  S  V  S  L  P  P  N  S  S  K  V  I  A  L  S  G  I  P  T  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48619" stop="48572"/>
                    <exon start="47086" stop="46794"/>
                    <exon start="44430" stop="44094"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYRVQSRASTDHALYQESGQNHVDGGKAHHNWIVSLFESQWSSIQMVVLREILLSAVRGGDPLTAWSAAARLLRSYYPLITPAGQNGLASALSNASERLPSGTRCADPALPFIRLHSFPLHSSQQDIVKRNHGRDDWWAGSAPSGPFIYTPFSKGEPSQSSKQELIWVVGEAVQVFVELANPCGFDLKVDSIYLSVNSGNFDAFPISVSLPPNSSKVIALSGIPTE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="54678" PGL_stop="48760"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54678" e_stop="54641"/>
            <exon e_start="53262" e_stop="53043"/>
            <exon e_start="52938" e_stop="52756"/>
            <exon e_start="51167" e_stop="51058"/>
            <exon e_start="49898" e_stop="49839"/>
            <exon e_start="48857" e_stop="48760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54678" e_stop="54641" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="54640" i_stop="53263" i_length="1378"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53262" e_stop="53043" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.949">
            <gDNA_intron_boundary i_start="53042" i_stop="52939" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52938" e_stop="52756" e_length="183"/>
          </exon>
          <intron i_serial="3" don_prob="0.851" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52755" i_stop="51168" i_length="1588"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51167" e_stop="51058" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51057" i_stop="49899" i_length="1159"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49898" e_stop="49839" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49838" i_stop="48858" i_length="981"/>
          </intron>
          <exon e_serial="6" e_score="0.959">
            <gDNA_exon_boundary e_start="48857" e_stop="48760" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54678" stop="54641"/>
              <exon start="53262" stop="53043"/>
              <exon start="52938" stop="52756"/>
              <exon start="51167" stop="51058"/>
              <exon start="49898" stop="49839"/>
              <exon start="48857" stop="48760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54678" stop="54641"/>
              <exon start="53262" stop="53043"/>
              <exon start="52938" stop="52756"/>
              <exon start="51167" stop="51058"/>
              <exon start="49898" stop="49839"/>
              <exon start="48857" stop="48807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54678" stop="54641"/>
              <exon start="53262" stop="53043"/>
              <exon start="52938" stop="52756"/>
              <exon start="51167" stop="51097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAG : CTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAG : GTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTG : ATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAG : AGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAG : GAAGGAGTTGGCCAAGGAAGTGGTTGATTTGTTGACTACGGCTGCTGATGGAGCAAAATCTTTGATTGATGCTAGTGACAGATTGATATTATTCATTG</gDNA_template>
            <first_frame> F  S  G  A  S  H  F  A  P  V  T  L  S :   *  R  M  K  A  S  R  G  A  T  *  F  C  F  P  L  L  I  V  K  L  K  N  S  T  C  K  L  *  C  K  I  L  L  P  H  C  *  *  N  L  K  N  Q  F  F  K  Q  S  L  V  E  L  F  S  R  H  L  *  I  P  K  R  V  L  A  Q  R  R  F  I  F  *  :  V  I  K  A  K  K  R  R  L  G  R  A  Q  K  T  I  G  D  Y  C  L  L  A  G  S  P  V  D  A  N  A  H  Y  T  T  S  L  E  L  A  R  L  T  G  D  F  F  W  Y  A  G  A  M  E  G  S  V  C  A  L  L  :  I  D  Q  M  G  Q  R  D  Q  F  L  D  D  E  V  K  H  R  Y  N  N  V  I  L  H  Y  R  K  S  F  I  Q  D  N  A  Q  R :   V  S  P  L  S  F  E  L  E  A  T  L  K  L  A  R  Y  L  C  R :   K  E  L  A  K  E  V  V  D  L  L  T  T  A  A  D  G  A  K  S  L  I  D  A  S  D  R  L  I  L  F  I  </first_frame>
            <second_frame>  S  A  V  L  R  I  L  P  R  *  L  S   : A  R  G  *  K  L  Q  G  E  Q  L  N  F  V  S  P  C  *  S  S  N  S  R  I  P  L  A  N  Y  D  A  R  Y  C  C  L  I  V  D  E  I  *  K  I  S  S  S  S  R  V  W  W  N  Y  S  Q  D  T  F  R  F  P  S  E  S  *  L  R  G  G  S  Y  F  R :   S  S  R  L  K  N  E  D  W  A  V  H  R  K  L  S  G  I  T  V  C  W  Q  G  H  L  L  M  L  M  P  I  I  Q  L  H  W  S  L  L  D  *  L  E  T  S  F  G  M  L  G  Q  W  K  A  V  F  V  L  C  * :   *  I  K  W  V  R  G  I  N  F  *  M  M  R  S  S  T  V  T  I  M  S  F  C  I  T  E  S  H  L  F  K  T  M  L  K   : E  F  L  L  *  V  S  S  L  R  L  L  S  N  *  H  D  T  S  A   : G  R  S  W  P  R  K  W  L  I  C  *  L  R  L  L  M  E  Q  N  L  *  L  M  L  V  T  D  *  Y  Y  S  L </second_frame>
            <third_frame>   Q  R  C  F  A  F  C  P  G  D  S  Q  :  L  E  D  E  S  F  K  G  S  N  L  I  L  F  P  P  A  D  R  Q  T  Q  E  F  H  L  Q  T  M  M  Q  D  I  A  A  S  L  L  M  K  F  E  K  S  V  L  Q  A  E  S  G  G  T  I  L  K  T  P  L  D  S  Q  A  S  L  S  S  E  E  V  H  I  L   : G  H  Q  G  *  K  T  K  I  G  P  C  T  E  N  Y  R  G  L  L  S  V  G  R  V  T  C  *  C  *  C  P  L  Y  N  F  I  G  A  C  *  I  D  W  R  L  L  L  V  C  W  G  N  G  R  Q  C  L  C  S  V   : D  R  S  N  G  S  E  G  S  I  S  R  *  *  G  Q  A  P  L  Q  *  C  H  F  A  L  Q  K  V  I  Y  S  R  Q  C  S  K  :  S  F  S  S  K  F  R  A  *  G  Y  S  Q  I  S  T  I  P  L  Q  :  E  G  V  G  Q  G  S  G  *  F  V  D  Y  G  C  *  W  S  K  I  F  D  *  C  *  *  Q  I  D  I  I  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52938" stop="52756"/>
                    <exon start="51167" stop="51058"/>
                    <exon start="49898" stop="49839"/>
                    <exon start="48857" stop="48761"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKAKKRRLGRAQKTIGDYCLLAGSPVDANAHYTTSLELARLTGDFFWYAGAMEGSVCALLIDQMGQRDQFLDDEVKHRYNNVILHYRKSFIQDNAQRVSPLSFELEATLKLARYLCRKELAKEVVDLLTTAADGAKSLIDASDRLILFI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54676" stop="54641"/>
                    <exon start="53262" stop="53043"/>
                    <exon start="52938" stop="52925"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRCFAFCPGDSQLEDESFKGSNLILFPPADRQTQEFHLQTMMQDIAASLLMKFEKSVLQAESGGTILKTPLDSQASLSSEEVHILGHQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="61229" PGL_stop="62015"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61229" e_stop="61835"/>
            <exon e_start="61926" e_stop="62015"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61229" e_stop="61835" e_length="607"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61836" i_stop="61925" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.956">
            <gDNA_exon_boundary e_start="61926" e_stop="62015" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61229" stop="61835"/>
              <exon start="61926" stop="62015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344312" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTGATAGAATAAGTTAGTCATTAACATTTTACATTGACTGCACCATTATTCATATTGGAGTATTCGTGGAACTATCTTCTTTTTTCTTATGCCTTTAAAAATAATAATTCTAATGTACTTCATTCTAACCTAGCTAATATATTTTAGACATTTTTTATCTAGACTTGCTCCTCCTCTCGGAAGAGGAACATAATTAATGTACTATAACACTTTGACCATAACCTAACCTAGCCAATATTTTAAGACATACTCTGCTAAGTCTTTATTTAGATTTGCTCTTTCTCTTGAATGAGGGACATAGTTAATGCTCTAAAACACTTTGACGGTAGCATTGCTACTATAACATTACTTCTGCCTTCTGGCACAGTTCTGCACCCAACTTAGCTGTTTATATCATGGTATTTCTCACTATTTATAACATAAGCAGAACATGTCGACTGAGAAGAGTCCGCTTGAGCAAACGTCACCTGCTGTTGCATCATCATGCCGAAAAAAGAAGTCTGAAAGTGCCACATTTTTGGAGGATGTGAAGGATCATATTGATGAGTTTATACATGCCTCAATGGATGAACACGCATCTTGCTTTAAGAAGACCATCAATAAG : ATGTTTGGGATGTCTAAAATTGTCGCTGAAAGAAATGCTGAAGCAAAGGAGGTTGAGAGCTCACTTCCTCTCCAAACTGTTGTATCTGAG</gDNA_template>
            <first_frame> I  L  I  E  *  V  S  H  *  H  F  T  L  T  A  P  L  F  I  L  E  Y  S  W  N  Y  L  L  F  S  Y  A  F  K  N  N  N  S  N  V  L  H  S  N  L  A  N  I  F  *  T  F  F  I  *  T  C  S  S  S  R  K  R  N  I  I  N  V  L  *  H  F  D  H  N  L  T  *  P  I  F  *  D  I  L  C  *  V  F  I  *  I  C  S  F  S  *  M  R  D  I  V  N  A  L  K  H  F  D  G  S  I  A  T  I  T  L  L  L  P  S  G  T  V  L  H  P  T  *  L  F  I  S  W  Y  F  S  L  F  I  T  *  A  E  H  V  D  *  E  E  S  A  *  A  N  V  T  C  C  C  I  I  M  P  K  K  E  V  *  K  C  H  I  F  G  G  C  E  G  S  Y  *  *  V  Y  T  C  L  N  G  *  T  R  I  L  L  *  E  D  H  Q  *   : D  V  W  D  V  *  N  C  R  *  K  K  C  *  S  K  G  G  *  E  L  T  S  S  P  N  C  C  I  *  </first_frame>
            <second_frame>  F  *  *  N  K  L  V  I  N  I  L  H  *  L  H  H  Y  S  Y  W  S  I  R  G  T  I  F  F  F  L  M  P  L  K  I  I  I  L  M  Y  F  I  L  T  *  L  I  Y  F  R  H  F  L  S  R  L  A  P  P  L  G  R  G  T  *  L  M  Y  Y  N  T  L  T  I  T  *  P  S  Q  Y  F  K  T  Y  S  A  K  S  L  F  R  F  A  L  S  L  E  *  G  T  *  L  M  L  *  N  T  L  T  V  A  L  L  L  *  H  Y  F  C  L  L  A  Q  F  C  T  Q  L  S  C  L  Y  H  G  I  S  H  Y  L  *  H  K  Q  N  M  S  T  E  K  S  P  L  E  Q  T  S  P  A  V  A  S  S  C  R  K  K  K  S  E  S  A  T  F  L  E  D  V  K  D  H  I  D  E  F  I  H  A  S  M  D  E  H  A  S  C  F  K  K  T  I  N  K  :  M  F  G  M  S  K  I  V  A  E  R  N  A  E  A  K  E  V  E  S  S  L  P  L  Q  T  V  V  S  E </second_frame>
            <third_frame>   F  D  R  I  S  *  S  L  T  F  Y  I  D  C  T  I  I  H  I  G  V  F  V  E  L  S  S  F  F  L  C  L  *  K  *  *  F  *  C  T  S  F  *  P  S  *  Y  I  L  D  I  F  Y  L  D  L  L  L  L  S  E  E  E  H  N  *  C  T  I  T  L  *  P  *  P  N  L  A  N  I  L  R  H  T  L  L  S  L  Y  L  D  L  L  F  L  L  N  E  G  H  S  *  C  S  K  T  L  *  R  *  H  C  Y  Y  N  I  T  S  A  F  W  H  S  S  A  P  N  L  A  V  Y  I  M  V  F  L  T  I  Y  N  I  S  R  T  C  R  L  R  R  V  R  L  S  K  R  H  L  L  L  H  H  H  A  E  K  R  S  L  K  V  P  H  F  W  R  M  *  R  I  I  L  M  S  L  Y  M  P  Q  W  M  N  T  H  L  A  L  R  R  P  S  I  R :   C  L  G  C  L  K  L  S  L  K  E  M  L  K  Q  R  R  L  R  A  H  F  L  S  K  L  L  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61650" stop="61835"/>
                    <exon start="61926" stop="62015"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKQNMSTEKSPLEQTSPAVASSCRKKKSESATFLEDVKDHIDEFIHASMDEHASCFKKTINKMFGMSKIVAERNAEAKEVESSLPLQTVVSE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61561" stop="61761"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HCYYNITSAFWHSSAPNLAVYIMVFLTIYNISRTCRLRRVRLSKRHLLLHHHAEKRSLKVPHFWRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="63691" PGL_stop="62146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63691" e_stop="62146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="63691" e_stop="62146" e_length="1546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63691" stop="63190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63691" stop="63228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63346" stop="62723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63345" stop="62882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62728" stop="62146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393922" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGGGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGATCAATAACTTCTTCTCACATTGGTTGTAACTGGGTTCACTTTTGCTTAAGAAAGATTAGAGAAACAGTTGAAAATCCTGTGCAACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAACTGCTTGTGTCGTCTTCTGTTCATCGTTTACTCTTTATTCCTGTTCTTGTTGAGTTAAGGGACCTGGTCCGTTGACTGATCGTGGACGCATACATCTTATCAGGGCACCATTACAAGCGTATTTTGAAAACTCCACCATCCAAGCCTGGATCAAACCCTCGGATGATATCTCTAAATACGCATGTAACTAGAGAACAAGCATAGAGTATGGTCCAAAGCTAAAGCTAGTTAGATGTCGACAGAAAAGGAAGAGCACAAACCATAAAACAAAGGATCCAACAATCACTATGAGGATTCATCAGGTTATTGTAATGCCCATTAGTTTTTTTTTTAAAAAAAAAATCTAGACATGTCTAATGTGTGGCAAAACCAACAGACATAAAAAGCAGCATAACTTCTTAGGCAAGAGCCTCTCAAATTGTTGTACCCATTTATTTTGTTTATCTAGACATGTCTAATGTGTGGTAAAACAGACAGATGTAAAAAGCAGCAAGACTTCTTAGGCAAGAGCATCTCAAATTGTTGTGCCCATTTATTTTGTTTATCTAGACATGTCTAATGTTTGGTAAAACCAACAGATGTAAAAAGCAGCACAACTTCTCAGGCAAGAGCATCTC</gDNA_template>
            <first_frame> S  S  S  I  K  E  L  S  K  G  P  D  P  E  K  S  A  Y  E  G  R  K  D  S  C  Q  K  A  V  N  S  D  V  V  G  A  Q  L  F  M  T  A  D  S  *  P  I  A  S  S  Q  G  F  V  Y  M  V  I  *  S  L  I  L  K  H  K  H  K  I  L  T  N  K  N  S  Q  A  *  K  E  K  V  I  F  K  E  E  *  *  S  Y  S  T  K  R  F  D  E  V  L  K  H  L  C  *  V  *  V  L  C  L  S  F  Y  R  F  L  R  L  E  N  S  Q  V  Y  K  Q  R  L  P  W  *  N  I  L  Q  Q  A  Q  Q  G  P  E  E  L  Q  A  S  E  C  V  L  R  V  I  L  S  W  L  Y  Y  K  F  V  P  N  L  *  R  I  Q  I  V  C  F  W  F  V  K  V  *  I  S  *  P  *  L  I  *  W  A  T  L  F  C  C  L  V  K  F  *  V  I  *  V  G  W  F  S  G  Q  C  C  T  C  L  V  K  F  *  I  I  *  S  *  V  V  *  R  A  M  G  S  P  F  S  K  I  *  V  I  *  G  *  *  L  S  G  Q  C  C  I  C  L  G  F  S  S  N  R  V  I  T  W  S  Y  D  Q  *  L  L  L  T  L  V  V  T  G  F  T  F  A  *  E  R  L  E  K  Q  L  K  I  L  C  N  R  S  W  F  Y  S  L  E  Q  G  G  F  H  V  N  C  L  C  R  L  L  F  I  V  Y  S  L  F  L  F  L  L  S  *  G  T  W  S  V  D  *  S  W  T  H  T  S  Y  Q  G  T  I  T  S  V  F  *  K  L  H  H  P  S  L  D  Q  T  L  G  *  Y  L  *  I  R  M  *  L  E  N  K  H  R  V  W  S  K  A  K  A  S  *  M  S  T  E  K  E  E  H  K  P  *  N  K  G  S  N  N  H  Y  E  D  S  S  G  Y  C  N  A  H  *  F  F  F  *  K  K  N  L  D  M  S  N  V  W  Q  N  Q  Q  T  *  K  A  A  *  L  L  R  Q  E  P  L  K  L  L  Y  P  F  I  L  F  I  *  T  C  L  M  C  G  K  T  D  R  C  K  K  Q  Q  D  F  L  G  K  S  I  S  N  C  C  A  H  L  F  C  L  S  R  H  V  *  C  L  V  K  P  T  D  V  K  S  S  T  T  S  Q  A  R  A  S  </first_frame>
            <second_frame>  A  Q  A  S  K  N  S  A  R  D  L  I  P  K  S  L  H  T  K  D  V  K  I  A  V  K  K  L  S  I  L  M  W  *  V  H  N  F  S  *  Q  Q  T  L  S  R  *  L  R  P  K  G  L  C  T  W  *  Y  S  L  L  S  *  N  T  N  T  R  F  *  Q  T  K  T  H  K  L  K  K  K  K  S  S  S  R  K  N  N  N  H  T  Q  Q  K  D  L  M  K  C  *  S  I  F  V  E  F  E  F  C  V  Y  H  F  I  G  F  C  D  L  K  I  L  K  Y  T  S  K  D  Y  L  G  E  I  F  S  S  K  H  N  K  V  P  R  S  C  K  R  Q  S  V  S  *  E  L  Y  F  R  G  Y  I  I  N  L  F  L  I  Y  K  G  F  R  *  F  V  F  G  L  *  K  Y  K  S  V  N  P  N  *  F  S  G  Q  H  C  F  V  A  *  S  N  S  K  S  S  R  W  D  G  L  V  V  S  V  V  P  A  *  S  N  S  K  S  S  R  V  R  W  F  S  E  R  W  G  L  R  L  A  K  S  K  L  S  R  G  N  S  L  V  G  S  V  V  S  A  *  A  F  Q  V  I  E  L  L  H  G  H  M  I  N  N  F  F  S  H  W  L  *  L  G  S  L  L  L  K  K  D  *  R  N  S  *  K  S  C  A  T  G  R  G  F  T  P  L  S  K  E  V  S  T  *  T  A  C  V  V  F  C  S  S  F  T  L  Y  S  C  S  C  *  V  K  G  P  G  P  L  T  D  R  G  R  I  H  L  I  R  A  P  L  Q  A  Y  F  E  N  S  T  I  Q  A  W  I  K  P  S  D  D  I  S  K  Y  A  C  N  *  R  T  S  I  E  Y  G  P  K  L  K  L  V  R  C  R  Q  K  R  K  S  T  N  H  K  T  K  D  P  T  I  T  M  R  I  H  Q  V  I  V  M  P  I  S  F  F  F  K  K  K  I  *  T  C  L  M  C  G  K  T  N  R  H  K  K  Q  H  N  F  L  G  K  S  L  S  N  C  C  T  H  L  F  C  L  S  R  H  V  *  C  V  V  K  Q  T  D  V  K  S  S  K  T  S  *  A  R  A  S  Q  I  V  V  P  I  Y  F  V  Y  L  D  M  S  N  V  W  *  N  Q  Q  M  *  K  A  A  Q  L  L  R  Q  E  H  L </second_frame>
            <third_frame>   L  K  H  Q  R  T  Q  Q  G  T  *  S  R  K  V  C  I  R  R  T  *  R  *  L  S  K  S  C  Q  F  *  C  G  R  C  T  T  F  H  D  S  R  L  L  A  D  S  F  V  P  R  V  C  V  H  G  D  I  V  S  Y  P  K  T  Q  T  Q  D  F  D  K  Q  K  L  T  S  L  K  R  K  S  H  L  Q  G  R  I  I  I  I  L  N  K  K  I  *  *  S  V  E  A  S  L  L  S  L  S  F  V  S  I  I  L  *  V  F  A  T  *  K  F  S  S  I  Q  A  K  T  T  L  V  K  Y  S  P  A  S  T  T  R  S  R  G  A  A  S  V  R  V  C  L  K  S  Y  T  F  V  V  I  L  *  I  C  S  *  F  I  K  D  S  D  S  L  F  L  V  C  K  S  I  N  Q  L  T  L  T  D  L  V  G  N  I  V  L  L  L  S  Q  I  L  S  H  L  G  G  M  V  *  W  S  V  L  Y  L  L  S  Q  I  L  N  H  L  E  L  G  G  L  A  S  D  G  V  S  V  *  Q  N  L  S  Y  L  G  V  I  A  *  W  A  V  L  Y  L  L  R  L  F  K  *  *  S  Y  Y  M  V  I  *  S  I  T  S  S  H  I  G  C  N  W  V  H  F  C  L  R  K  I  R  E  T  V  E  N  P  V  Q  Q  V  V  V  L  L  P  *  A  R  R  F  P  R  K  L  L  V  S  S  S  V  H  R  L  L  F  I  P  V  L  V  E  L  R  D  L  V  R  *  L  I  V  D  A  Y  I  L  S  G  H  H  Y  K  R  I  L  K  T  P  P  S  K  P  G  S  N  P  R  M  I  S  L  N  T  H  V  T  R  E  Q  A  *  S  M  V  Q  S  *  S  *  L  D  V  D  R  K  G  R  A  Q  T  I  K  Q  R  I  Q  Q  S  L  *  G  F  I  R  L  L  *  C  P  L  V  F  F  L  K  K  K  S  R  H  V  *  C  V  A  K  P  T  D  I  K  S  S  I  T  S  *  A  R  A  S  Q  I  V  V  P  I  Y  F  V  Y  L  D  M  S  N  V  W  *  N  R  Q  M  *  K  A  A  R  L  L  R  Q  E  H  L  K  L  L  C  P  F  I  L  F  I  *  T  C  L  M  F  G  K  T  N  R  C  K  K  Q  H  N  F  S  G  K  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63596" stop="63402"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGRCTTFHDSRLLADSFVPRVCVHGDIVSYPKTQTQDFDKQKLTSLKRKSHLQGRIIIILNKKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="69615" PGL_stop="71136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69615" e_stop="69799"/>
            <exon e_start="70236" e_stop="71136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.906" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69615" e_stop="69799" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.906" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69800" i_stop="70235" i_length="436"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="70236" e_stop="71136" e_length="901"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69615" stop="69799"/>
              <exon start="70236" stop="70700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69615" stop="69799"/>
              <exon start="70236" stop="70620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69616" stop="69799"/>
              <exon start="70236" stop="70619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69616" stop="69799"/>
              <exon start="70236" stop="70575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69654" stop="69799"/>
              <exon start="70236" stop="70738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69660" stop="69799"/>
              <exon start="70236" stop="71136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69723" stop="69799"/>
              <exon start="70236" stop="70699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69762" stop="69799"/>
              <exon start="70236" stop="70563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70445" stop="71091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70458" stop="71131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70914" stop="71131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394927" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT : GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAGAGCTCT</gDNA_template>
            <first_frame> P  Q  P  I  S  F  S  I  S  F  R  H  F  N  K  H  F  F  A  N  T  H  T  S  I  N  Y  I  C  K  I  V  N  I  M  A  R  A  Q  Q  R  Y  R  G  V  R  Q  R  H  W  G  S  W  V  S  E  I  R  H  P  L  L :   K  T  R  I  W  L  G  T  F  E  T  A  E  D  A  A  R  A  Y  D  E  A  A  R  L  M  C  G  P  R  A  R  T  N  F  P  Y  N  P  N  M  P  Q  T  S  S  S  K  L  L  S  T  T  L  T  A  K  L  H  K  C  Y  M  A  S  L  Q  M  T  K  T  S  P  Q  G  Q  K  L  A  K  N  A  T  N  V  Q  E  S  V  I  N  S  Y  K  M  K  Q  Q  M  L  V  P  K  P  S  V  L  L  T  H  H  D  H  H  E  E  A  K  V  V  N  L  G  V  G  V  I  R  K  V  E  D  Q  V  L  E  G  I  P  Q  F  V  K  P  L  E  D  D  H  I  E  Q  M  I  E  E  L  L  D  Y  G  S  I  E  L  C  S  N  V  V  P  S  H  Q  I  Q  *  A  C  S  *  I  D  Y  C  L  I  L  A  T  F  D  Q  C  R  Y  *  I  T  L  L  L  M  F  S  L  S  N  C  L  F  L  G  P  T  L  F  C  T  R  K  I  L  I  L  L  I  *  P  H  L  Y  S  R  S  R  F  V  W  D  *  S  L  V  I  V  V  L  S  L  L  S  S  L  P  L  F  K  I  Y  V  S  L  V  G  L  G  I  F  S  F  W  F  L  E  F  L  L  *  E  N  L  L  L  V  V  K  F  H  Y  N  I  I  F  S  L  F  *  S  S </first_frame>
            <second_frame>  L  N  Q  F  H  F  L  S  H  S  G  I  S  T  N  T  F  L  R  T  H  T  L  Q  L  T  T  F  V  R  L  S  I  L  W  L  G  H  N  K  D  I  E  E  F  D  R  D  I  G  V  L  G  S  P  K  F  A  I  H  C   : *  R  Q  E  F  G  *  A  L  L  R  Q  Q  K  M  Q  Q  E  H  M  M  K  Q  Q  G  *  C  V  V  Q  E  L  E  L  I  S  H  T  T  Q  T  C  H  K  H  L  P  L  S  Y  S  Q  L  H  *  Q  P  S  Y  T  N  A  T  W  L  H  F  K  *  P  K  P  H  H  K  D  K  N  *  Q  K  M  Q  P  M  F  K  K  V  L  L  I  P  I  K  *  N  N  K  C  W  Y  Q  S  H  Q  Y  Y  *  L  I  M  I  I  M  R  K  L  K  *  S  T  W  E  W  E  *  L  G  K  L  K  I  K  Y  L  R  V  Y  H  N  L  S  S  H  L  K  M  I  T  L  N  K  *  L  K  N  C  W  I  M  D  P  L  S  F  A  L  M  L  F  L  L  T  K  S  S  E  L  A  R  K  S  T  I  A  *  Y  L  L  H  L  I  S  A  G  I  R  *  L  F  Y  *  C  S  L  S  V  I  V  S  F  W  V  L  H  C  S  V  L  E  R  Y  S  F  C  *  F  N  P  I  C  I  A  V  P  D  L  F  G  T  E  A  *  L  L  L  Y  *  V  F  *  V  V  S  L  C  L  K  S  M  Y  R  *  *  V  *  A  F  S  L  F  G  S  *  S  F  Y  S  K  R  T  F  Y  *  L  *  N  S  I  I  I  *  S  F  L  S  F  R  A   </second_frame>
            <third_frame>   S  T  N  F  I  F  Y  L  I  Q  A  F  Q  Q  T  L  F  C  E  H  T  H  F  N  *  L  H  L  *  D  C  Q  Y  Y  G  *  G  T  T  K  I  S  R  S  S  T  E  T  L  G  F  L  G  L  R  N  S  P  S  I  V  :  E  D  K  N  L  V  R  H  F  *  D  S  R  R  C  S  K  S  I  *  *  S  S  K  A  N  V  W  S  K  S  *  N  *  F  P  I  Q  P  K  H  A  T  N  I  F  L  *  A  T  L  N  Y  I  N  S  Q  V  T  Q  M  L  H  G  F  T  S  N  D  Q  N  L  T  T  R  T  K  I  S  K  K  C  N  Q  C  S  R  K  C  Y  *  F  L  *  N  E  T  T  N  V  G  T  K  A  I  S  T  I  D  S  S  *  S  S  *  G  S  *  S  S  Q  L  G  S  G  S  N  *  E  S  *  R  S  S  T  *  G  Y  T  T  I  C  Q  A  T  *  R  *  S  H  *  T  N  D  *  R  I  V  G  L  W  I  H  *  A  L  L  *  C  C  S  F  S  P  N  P  V  S  L  L  V  N  R  L  L  P  N  T  C  Y  I  *  S  V  Q  V  L  D  N  S  S  T  D  V  L  S  Q  *  L  S  L  F  G  S  Y  I  V  L  Y  *  K  D  T  H  F  A  N  L  T  P  F  V  *  P  F  P  I  C  L  G  L  K  L  S  Y  C  C  I  K  S  F  K  *  S  P  S  V  *  N  L  C  I  V  S  R  S  R  H  F  L  F  L  V  P  R  V  F  T  L  R  E  P  S  T  S  C  K  I  P  L  *  Y  N  L  F  S  L  L  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69615" stop="69799"/>
                    <exon start="70236" stop="70767"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQPISFSISFRHFNKHFFANTHTSINYICKIVNIMARAQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNMPQTSSSKLLSTTLTAKLHKCYMASLQMTKTSPQGQKLAKNATNVQESVINSYKMKQQMLVPKPSVLLTHHDHHEEAKVVNLGVGVIRKVEDQVLEGIPQFVKPLEDDHIEQMIEELLDYGSIELCSNVVPSHQIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="88942" PGL_stop="89460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88942" e_stop="89460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="88942" e_stop="89460" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88942" stop="89460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAGCGGAAAGTATGTTGTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATAGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTGCCAATGCCAGATAAGAAAGATTGGTCAGATCCTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAATTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTTGTCGTAATGTTTCTATGATATAAAGAATAATTTATCACGTAAACATTTAAATGAATTTCAGTTTTAATTACGACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACGTACAAACATGTGGTAATTACATTTGAA</gDNA_template>
            <first_frame> F  E  R  K  V  C  C  C  G  R  F  Q  L  D  E  I  P  C  S  H  A  I  A  V  L  K  K  K  N  V  T  D  M  N  P  Y  C  S  D  Y  Y  K  P  D  A  L  A  K  T  Y  E  I  P  M  V  P  M  P  D  K  K  D  W  S  D  P  K  H  V  V  A  E  T  V  Y  P  P  R  Y  R  R  S  S  G  R  P  R  K  R  R  R  K  N  A  D  E  K  I  S  V  N  T  N  C  C  G  Q  C  G  Q  E  G  H  N  R  R  T  C  T  F  Y  P  K  E  K  *  I  C  R  N  V  S  M  I  *  R  I  I  Y  H  V  N  I  *  M  N  F  S  F  N  Y  D  C  K  L  N  T  L  C  L  D  K  *  T  Y  K  H  V  V  I  T  F  E </first_frame>
            <second_frame>  L  S  G  K  Y  V  V  V  V  D  F  N  *  M  R  Y  L  V  H  M  Q  *  L  Y  *  K  K  R  M  S  P  I  *  I  R  I  A  L  I  I  T  S  L  M  R  W  Q  K  H  M  K  F  Q  W  C  Q  C  Q  I  R  K  I  G  Q  I  L  N  T  W  *  L  K  L  C  I  H  L  D  T  E  D  H  L  D  D  Q  E  K  E  E  E  R  M  Q  M  K  R  F  R  *  T  Q  I  V  V  D  N  V  D  K  K  G  T  T  E  E  L  V  L  S  T  Q  K  R  S  E  F  V  V  M  F  L  *  Y  K  E  *  F  I  T  *  T  F  K  *  I  S  V  L  I  T  T  A  N  *  T  L  C  V  *  I  N  K  R  T  N  M  W  *  L  H  L   </second_frame>
            <third_frame>   *  A  E  S  M  L  L  W  *  I  S  T  R  *  D  T  L  F  T  C  N  S  C  I  E  K  K  E  C  H  R  Y  E  S  V  L  L  *  L  L  Q  A  *  C  V  G  K  N  I  *  N  S  N  G  A  N  A  R  *  E  R  L  V  R  S  *  T  R  G  S  *  N  C  V  S  T  *  I  Q  K  I  I  W  T  T  K  K  K  K  K  K  E  C  R  *  K  D  F  G  E  H  K  L  L  W  T  M  W  T  R  R  A  Q  Q  K  N  L  Y  F  L  P  K  R  E  V  N  L  S  *  C  F  Y  D  I  K  N  N  L  S  R  K  H  L  N  E  F  Q  F  *  L  R  L  Q  I  E  H  F  V  F  R  *  I  N  V  Q  T  C  G  N  Y  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88942" stop="89319"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FERKVCCCGRFQLDEIPCSHAIAVLKKKNVTDMNPYCSDYYKPDALAKTYEIPMVPMPDKKDWSDPKHVVAETVYPPRYRRSSGRPRKRRRKNADEKISVNTNCCGQCGQEGHNRRTCTFYPKEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="92850" PGL_stop="91944"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92850" e_stop="92570"/>
            <exon e_start="92368" e_stop="92246"/>
            <exon e_start="92162" e_stop="91944"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="0.975"/>
          <exon-intron don_prob="0.988" acc_prob="0.991" e_score="0.984"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="92850" e_stop="92570" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="92569" i_stop="92369" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="92368" e_stop="92246" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.991">
            <gDNA_intron_boundary i_start="92245" i_stop="92163" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="92162" e_stop="91944" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92850" stop="92570"/>
              <exon start="92368" stop="92246"/>
              <exon start="92162" stop="91944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCTGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAG : GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAACCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAACAGATTCATCG : GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGGGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</gDNA_template>
            <first_frame> N  *  L  F  *  *  K  Q  I  T  P  S  *  C  N  L  L  A  K  R  T  S  I  F  R  L  I  Q  A  H  F  S  L  T  N  K  H  L  S  K  Y  R  L  I  S  M  I  W  V  V  *  L  R  M  V  V  V  F  L  V  K  M  V  S  I  I  S  S  T  M  Q  G  M  S  M  W  M  V  L  V  L  L  *  M  R  V  N  Q  *  S  L  I  Q  R :   M  V  T  H  I  S  R  T  K  I  *  M  N  I  S  W  T  N  P  L  T  T  M  F  I  T  T  S  L  M  C  C  P  K  K  Q  Q  Q  I  H  R :   I  L  Q  L  Q  Q  Q  Y  R  H  Q  L  K  Q  Q  *  K  R  L  S  K  I  W  V  K  M  L  P  M  L  D  H  Y  I  L  T  I  Q  R  I  *  L  A  A  S  T  C  *  P  T  V  N  Y  P  L  K  F  Q  *  R  G  L  L  L  K  L  M  Q  S  L  L  R   </first_frame>
            <second_frame>  I  D  Y  F  D  K  S  K  S  L  P  A  D  A  I  Y  *  Q  R  E  H  Q  F  S  G  *  Y  K  H  I  S  V  *  Q  T  N  I  S  A  N  T  G  *  S  R  *  Y  G  W  C  S  *  G  W  W  W  F  F  W  *  K  W  *  A  S  Y  R  R  R  C  R  G  C  R  C  G  W  C  W  C  C  C  K  *  G  *  T  N  S  H  *  S  K   : G  W  *  R  T  S  V  A  P  R  F  K  *  T  Y  H  G  P  T  R  *  R  Q  C  S  S  Q  H  P  S  C  V  A  R  K  N  N  N  R  F  I   : G  F  F  N  F  N  N  N  I  A  I  N  S  S  S  N  R  S  A  Y  Q  R  F  G  *  R  C  Y  Q  C  *  T  I  I  F  L  R  S  K  E  Y  N  *  Q  P  V  L  V  D  R  Q  S  I  T  H  *  N  S  N  N  G  D  C  C  *  N  *  C  S  H  S  C  A  </second_frame>
            <third_frame>   L  I  I  L  I  K  A  N  H  S  Q  L  M  Q  S  I  S  K  E  N  I  N  F  Q  A  D  T  S  T  F  Q  S  D  K  Q  T  S  Q  Q  I  P  V  D  L  D  D  M  G  G  V  A  E  D  G  G  G  F  S  G  K  N  G  E  H  H  I  V  D  D  A  G  D  V  D  V  D  G  V  G  V  A  V  N  E  G  E  P  I  V  T  D  P  K  :  D  G  D  A  H  Q  S  H  Q  D  L  N  E  H  I  M  D  Q  P  V  D  D  N  V  H  H  N  I  P  H  V  L  P  E  K  T  T  T  D  S  S  :  D  S  S  T  S  T  T  I  S  P  S  T  Q  A  A  I  E  A  L  I  K  D  L  G  K  D  A  T  N  A  R  P  L  Y  S  Y  D  P  K  N  I  T  S  S  Q  Y  L  L  T  D  S  Q  L  P  T  E  I  P  I  T  G  I  A  V  K  T  D  A  V  T  P  A  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92848" stop="92570"/>
                    <exon start="92368" stop="92246"/>
                    <exon start="92162" stop="91944"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIILIKANHSQLMQSISKENINFQADTSTFQSDKQTSQQIPVDLDDMGGVAEDGGGFSGKNGEHHIVDDAGDVDVDGVGVAVNEGEPIVTDPKDGDAHQSHQDLNEHIMDQPVDDNVHHNIPHVLPEKTTTDSSDSSTSTTISPSTQAAIEALIKDLGKDATNARPLYSYDPKNITSSQYLLTDSQLPTEIPITGIAVKTDAVTPAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="94111" PGL_stop="93221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94111" e_stop="93561"/>
            <exon e_start="93452" e_stop="93221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="94111" e_stop="93561" e_length="551"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93560" i_stop="93453" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="0.940">
            <gDNA_exon_boundary e_start="93452" e_stop="93221" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94111" stop="93561"/>
              <exon start="93452" stop="93221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTTCTATTGATAACAGAGCGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGCTGTGAGAGAACGCAATGTCATCCCAAGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTCCAAAAG : TTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCACAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTAGATGATTTCTCCACAAAACCGCCAGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAAGAAGAAAAAAATCGATTATTCAAA</gDNA_template>
            <first_frame> N  L  V  *  M  I  L  H  Y  *  Q  D  L  R  S  E  E  I  P  M  I  S  N  T  Q  N  K  L  I  V  C  F  L  K  S  I  S  L  V  Q  S  I  V  L  Q  S  I  N  *  F  K  G  L  R  W  V  I  G  R  A  I  R  M  H  S  K  C  L  Y  C  S  L  F  I  H  L  Y  *  L  L  L  I  T  E  R  Y  L  L  S  T  F  *  W  L  K  M  V  D  I  N  I  F  L  G  V  S  Y  H  F  P  N  *  L  V  H  L  D  R  I  L  T  L  V  K  S  C  T  D  Y  M  G  C  H  M  H  *  M  F  G  Y  T  N  V  H  P  I  *  I  Q  K  *  L  *  E  N  A  M  S  S  Q  E  Y  A  I  G  E  L  C  L  K  R  Q  S  L  K  C  L  C  P  P  F  S  K  S :   *  N  A  C  S  N  I  V  P  T  A  E  E  I  E  A  F  D  I  A  Q  V  E  H  A  H  S  T  S  I  P  L  V  Q  P  N  E  Q  D  D  L  D  D  F  S  T  K  P  P  E  Q  L  L  R  T  Y  S  R  V  S  D  T  S  P  P  P  P  P  K  E  E  K  N  R  L  F  K </first_frame>
            <second_frame>  I  W  Y  R  *  F  C  I  I  N  R  T  *  G  Q  R  K  Y  Q  *  F  Q  I  P  R  T  N  *  L  Y  A  F  *  K  V  F  P  W  C  S  Q  *  C  Y  K  A  S  T  S  S  K  V  *  D  G  *  L  G  E  Q  S  G  C  T  P  N  V  Y  T  V  L  Y  S  Y  I  C  I  S  F  Y  *  *  Q  S  D  I  Y  C  R  L  S  N  G  *  R  W  *  I  S  T  F  S  L  G  S  A  I  I  F  Q  T  N  W  F  T  *  T  G  F  *  R  *  *  K  V  V  P  I  I  W  D  A  I  C  T  K  C  L  D  I  R  M  C  I  Q  F  K  F  R  N  S  C  E  R  T  Q  C  H  P  K  N  M  Q  L  E  S  C  V  *  K  G  K  V  *  N  A  Y  V  H  H  F  P  K   : V  R  M  H  V  Q  T  L  S  Q  Q  Q  R  K  L  K  L  L  I  L  H  K  L  N  M  L  I  L  H  Q  Y  H  *  Y  N  Q  T  S  K  M  I  *  M  I  S  P  Q  N  R  Q  N  S  Y  *  G  H  I  L  E  C  L  I  H  L  L  H  H  R  Q  K  K  K  K  I  D  Y  S   </second_frame>
            <third_frame>   F  G  I  D  D  F  A  L  L  T  G  L  K  V  R  G  N  T  N  D  F  K  Y  P  E  Q  T  N  C  M  L  F  K  K  Y  F  P  G  A  V  N  S  V  T  K  H  Q  L  V  Q  R  F  K  M  G  N  W  E  S  N  Q  D  A  L  Q  M  S  I  L  F  F  I  H  T  F  V  L  A  S  I  D  N  R  A  I  S  I  V  D  F  L  M  V  E  D  G  R  Y  Q  H  F  P  W  G  Q  L  S  F  S  K  L  I  G  S  L  R  Q  D  F  D  V  S  K  K  L  Y  R  L  Y  G  M  P  Y  A  L  N  V  W  I  Y  E  C  A  S  N  L  N  S  E  I  A  V  R  E  R  N  V  I  P  R  I  C  N  W  R  V  V  S  E  K  A  K  F  E  M  L  M  S  T  I  F  Q  K  :  L  E  C  M  F  K  H  C  P  N  S  R  G  N  *  S  F  *  Y  C  T  S  *  T  C  S  F  Y  I  N  T  I  S  T  T  K  R  A  R  *  F  R  *  F  L  H  K  T  A  R  T  V  I  E  D  I  F  *  S  V  *  Y  I  S  S  T  T  A  K  R  R  K  K  S  I  I  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94109" stop="93561"/>
                    <exon start="93452" stop="93408"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGIDDFALLTGLKVRGNTNDFKYPEQTNCMLFKKYFPGAVNSVTKHQLVQRFKMGNWESNQDALQMSILFFIHTFVLASIDNRAISIVDFLMVEDGRYQHFPWGQLSFSKLIGSLRQDFDVSKKLYRLYGMPYALNVWIYECASNLNSEIAVRERNVIPRICNWRVVSEKAKFEMLMSTIFQKLECMFKHCPNSRGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="108517" PGL_stop="104875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108517" e_stop="108410"/>
            <exon e_start="107225" e_stop="107058"/>
            <exon e_start="106451" e_stop="106338"/>
            <exon e_start="105171" e_stop="104875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108517" e_stop="108410" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="108409" i_stop="107226" i_length="1184"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107225" e_stop="107058" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="107057" i_stop="106452" i_length="606"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106451" e_stop="106338" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106337" i_stop="105172" i_length="1166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105171" e_stop="104875" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108517" stop="108410"/>
              <exon start="107225" stop="107058"/>
              <exon start="106451" stop="106338"/>
              <exon start="105171" stop="104879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108516" stop="108410"/>
              <exon start="107225" stop="107058"/>
              <exon start="106451" stop="106338"/>
              <exon start="105171" stop="105020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107215" stop="107058"/>
              <exon start="106451" stop="106338"/>
              <exon start="105171" stop="104875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106433" stop="106338"/>
              <exon start="105171" stop="104967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAG : GAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAG : ATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG : GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGAATCC</gDNA_template>
            <first_frame> L  Q  Q  V  N  S  Q  M  Q  A  W  V  S  S  G  G  S  E  I  F  S  H  T  L  T  R  H  Q  E  I  L  Q  D  L  F  Q  :  E  F  N  R  I  R  S  S  Y  R  A  K  K  E  H  A  S  L  L  E  D  F  R  E  F  D  R  T  R  L  D  L  E  D  G  S  G  S  H  D  Q  A  L  L  N  E  R  A  T  L  H  R  T  T  G  Q  :  M  D  G  V  I  S  Q  A  Q  E  T  I  K  T  L  M  F  Q  R  S  T  F  G  G  I  N  S  K  L  S  N  I  S  S  R  L  P  T  :  V  N  H  I  L  S  A  I  K  K  K  K  S  M  D  T  I  I  L  S  L  V  A  S  V  C  M  F  L  I  L  V  Y  W  M  T  K  *  D  S  N  *  L  D  S  *  W  S  F  E  H  H  L  C  L  F  V  S  F  C  I  F  T  S  E  F  C  D  S  S  F  L  Y  M  *  E  G  I  L  N  W  F  *  C  T  R  L  L  C  Q  S  K  Y  Q  H  D  L  E  S </first_frame>
            <second_frame>  F  N  K  *  I  H  K  C  K  H  G  F  H  R  E  D  L  R  S  S  L  I  H  *  L  A  I  K  K  F  F  K  I  F  F  R :   S  L  T  G  S  V  Q  V  T  E  P  R  K  S  M  L  H  C  L  K  I  L  E  S  S  T  G  P  G  *  I  W  K  M  V  V  G  L  M  T  K  H  S  L  T  N  V  L  L  S  I  G  L  L  D  R :   W  M  V  *  F  L  K  L  K  K  Q  *  R  H  L  C  F  K  D  Q  H  L  V  A  L  I  Q  N  S  A  I  S  A  V  A  S  Q  R :   L  T  I  F  F  Q  Q  *  R  R  K  S  L  W  I  R  S  F  F  H  *  L  P  L  Y  A  C  F  S  F  W  F  T  G  *  R  N  E  T  V  I  N  W  T  P  D  G  A  L  S  T  I  F  A  C  L  Y  L  F  V  Y  S  P  V  N  F  V  T  L  H  F  Y  T  C  K  K  V  S  *  I  G  F  D  A  R  G  C  Y  A  N  P  S  I  N  M  I  *  N   </second_frame>
            <third_frame>   S  T  S  K  F  T  N  A  S  M  G  F  I  G  R  I  *  D  L  L  S  Y  T  D  S  P  S  R  N  S  S  R  S  F  S   : G  V  *  P  D  P  F  K  L  Q  S  Q  E  R  A  C  F  I  A  *  R  F  *  R  V  R  P  D  Q  V  R  S  G  R  W  *  W  V  S  *  P  S  T  P  *  R  T  C  Y  S  P  *  D  Y  W  T   : D  G  W  C  D  F  S  S  S  R  N  N  K  D  T  Y  V  S  K  I  N  I  W  W  H  *  F  K  T  Q  Q  Y  Q  Q  S  P  P  N   : G  *  P  Y  S  F  S  N  K  E  E  K  V  Y  G  Y  D  H  S  F  I  S  C  L  C  M  H  V  S  H  F  G  L  L  D  D  E  M  R  Q  *  L  I  G  L  L  M  E  L  *  A  P  S  L  L  V  C  I  F  L  Y  I  H  Q  *  I  L  *  L  F  I  F  I  H  V  R  R  Y  L  E  L  V  L  M  H  A  V  A  M  P  I  Q  V  S  T  *  F  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108517" stop="108410"/>
                    <exon start="107225" stop="107058"/>
                    <exon start="106451" stop="106338"/>
                    <exon start="105171" stop="105058"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQQVNSQMQAWVSSGGSEIFSHTLTRHQEILQDLFQEFNRIRSSYRAKKEHASLLEDFREFDRTRLDLEDGSGSHDQALLNERATLHRTTGQMDGVISQAQETIKTLMFQRSTFGGINSKLSNISSRLPTVNHILSAIKKKKSMDTIILSLVASVCMFLILVYWMTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="106998" e_stop="106338"/>
            <exon e_start="105171" e_stop="104967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="106998" e_stop="106338" e_length="661"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106337" i_stop="105172" i_length="1166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105171" e_stop="104967" e_length="205"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106998" stop="106348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106433" stop="106338"/>
              <exon start="105171" stop="104967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG : GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACT</gDNA_template>
            <first_frame> R  K  F  H  H  S  Y  D  V  E  S  V  F  S  Y  V  E  V  F  L  K  H  L  E  L  P  K  K  L  T  F  V  S  C  F  S  F  N  A  D  L  L  F  S  S  Y  Y  S  W  G  D  V  L  N  M  R  Y  I  H  L  N  K  V  K  I  *  D  L  V  S  V  I  Y  V  N  L  K  M  N  V  Q  S  L  W  T  *  N  Q  N  N  M  Q  L  Y  T  Y  L  Q  I  I  A  P  K  L  L  R  L  M  F  F  E  *  Q  L  *  R  K  E  K  L  *  E  Y  K  A  L  S  R  W  P  Q  I  F  H  G  H  C  N  F  *  E  Y  L  F  Y  C  S  N  Q  V  L  L  F  L  L  V  L  *  P  C  V  L  L  Y  L  I  A  D  S  *  *  Y  I  R  R  N  Y  *  L  L  D  I  D  G  W  C  D  F  S  S  S  R  N  N  K  D  T  Y  V  S  K  I  N  I  W  W  H  *  F  K  T  Q  Q  Y  Q  Q  S  P  P  N   : G  *  P  Y  S  F  S  N  K  E  E  K  V  Y  G  Y  D  H  S  F  I  S  C  L  C  M  H  V  S  H  F  G  L  L  D  D  E  M  R  Q  *  L  I  G  L  L  M  E  L  *  A  P  S  L  L  V  C  I  F  L  Y  I  H  Q  *  I  L  *   </first_frame>
            <second_frame>  E  N  S  T  T  V  M  M  L  N  P  S  F  H  M  W  K  Y  F  S  N  T  W  S  C  L  K  N  L  L  L  F  L  A  S  L  S  M  R  I  Y  C  F  P  H  I  I  A  G  V  M  C  *  T  *  D  I  Y  I  *  I  K  *  K  F  K  T  W  S  A  *  Y  M  L  I  L  K  *  M  C  S  R  Y  G  L  E  T  K  T  I  C  N  Y  I  L  I  F  K  S  L  H  P  N  Y  Y  A  *  C  F  L  S  N  S  C  K  G  R  K  N  Y  K  S  T  K  L  C  L  D  G  H  R  F  S  M  D  I  V  I  F  K  S  T  Y  F  I  V  V  I  R  C  C  S  F  C  *  F  Y  S  R  V  Y  C  C  I  *  L  P  T  L  D  N  I  S  E  E  I  T  D  F  L  I  *  M  D  G  V  I  S  Q  A  Q  E  T  I  K  T  L  M  F  Q  R  S  T  F  G  G  I  N  S  K  L  S  N  I  S  S  R  L  P  T  :  V  N  H  I  L  S  A  I  K  K  K  K  S  M  D  T  I  I  L  S  L  V  A  S  V  C  M  F  L  I  L  V  Y  W  M  T  K  *  D  S  N  *  L  D  S  *  W  S  F  E  H  H  L  C  L  F  V  S  F  C  I  F  T  S  E  F  C  D  </second_frame>
            <third_frame>   K  I  P  P  Q  L  *  C  *  I  R  L  F  I  C  G  S  I  S  Q  T  L  G  A  A  *  K  T  Y  F  C  F  L  L  L  F  Q  C  G  S  I  V  F  L  I  L  *  L  G  *  C  A  K  H  E  I  Y  T  F  K  *  S  K  N  L  R  L  G  Q  R  N  I  C  *  S  *  N  E  C  A  V  V  M  D  L  K  P  K  Q  Y  A  T  I  Y  L  S  S  N  H  C  T  Q  T  I  T  L  N  V  F  *  V  T  A  V  K  E  G  K  T  I  R  V  Q  S  S  V  *  M  A  T  D  F  P  W  T  L  *  F  L  R  V  L  I  L  L  *  *  S  G  A  A  L  S  V  S  F  I  A  V  C  I  V  V  F  N  C  R  L  L  I  I  Y  Q  K  K  L  L  T  S  *  Y  R  W  M  V  *  F  L  K  L  K  K  Q  *  R  H  L  C  F  K  D  Q  H  L  V  A  L  I  Q  N  S  A  I  S  A  V  A  S  Q  R :   L  T  I  F  F  Q  Q  *  R  R  K  S  L  W  I  R  S  F  F  H  *  L  P  L  Y  A  C  F  S  F  W  F  T  G  *  R  N  E  T  V  I  N  W  T  P  D  G  A  L  S  T  I  F  A  C  L  Y  L  F  V  Y  S  P  V  N  F  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106451" stop="106338"/>
                    <exon start="105171" stop="105058"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDGVISQAQETIKTLMFQRSTFGGINSKLSNISSRLPTVNHILSAIKKKKSMDTIILSLVASVCMFLILVYWMTK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106998" stop="106801"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKFHHSYDVESVFSYVEVFLKHLELPKKLTFVSCFSFNADLLFSSYYSWGDVLNMRYIHLNKVKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="111979" PGL_stop="112789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111979" e_stop="112789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="111979" e_stop="112789" e_length="811"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111979" stop="112789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATATTTGAAAGAAATTAGATAGCGACTCACCTTACGCTAAGGTGAAAAATACTGAAGTTACAATTTTACAACATGTCCATTTATATGTGGCATGTTGTCAATAGATTAAAGTTACAATTTCACAGTATGGTCCCTTACTTATACATGGGATGCTTACAGGAAAATGAGTCCAGCACAAATGAACAATTGCCCTGCATCTATCCCTACATATACATGGGGTGCTTACAGGAAAATGAGTCCAGTACAAATGAACACTTGCCCTGCATCTATCCCTACAGACTTGTGATCACTTTTTCATACTTTGATTCGATCAATCAATCAAGATGTTAACGCTTTTGCTTATGCAGGTTAGTAAAGTATGTTTTCGCGTTTCAAAGGGAGTACTTGACGAGTGGAAAACACAAATAAGAAAAAAGGAAAACAGTCGCTCTTGTGTAGTCATTCTATAATGGTTTCTAGGAGATGTCATTTCCCTACAGAATTTACTTTCAGTCAGCAAGTGGAACGCCCTAAAAAACAGTTTCATTCTGCTATATCCATCACAACATTGGTGGTGCTAACGTAAGTATCATCCTGCTTCTCCACCATCTCTATATCAGTATCTCCGTTTAAACTGCAGTGTTTTATCTCCTCTCCAGGAATCTCTGAAGGGCTAATGTCATGGGATATATTGCTTTCTGTTGTCCTTAAATTGCTAGTACCCTCGGACACAAATTCTGTACCTGTTGGAAAATTGTCATGTTTTCCCTCAGTAGTGTGAAGCCTACCATCCCTTAGAAATGATGGCACTGGAGAGGGGTTTCCACC</gDNA_template>
            <first_frame> *  N  I  *  K  K  L  D  S  D  S  P  Y  A  K  V  K  N  T  E  V  T  I  L  Q  H  V  H  L  Y  V  A  C  C  Q  *  I  K  V  T  I  S  Q  Y  G  P  L  L  I  H  G  M  L  T  G  K  *  V  Q  H  K  *  T  I  A  L  H  L  S  L  H  I  H  G  V  L  T  G  K  *  V  Q  Y  K  *  T  L  A  L  H  L  S  L  Q  T  C  D  H  F  F  I  L  *  F  D  Q  S  I  K  M  L  T  L  L  L  M  Q  V  S  K  V  C  F  R  V  S  K  G  V  L  D  E  W  K  T  Q  I  R  K  K  E  N  S  R  S  C  V  V  I  L  *  W  F  L  G  D  V  I  S  L  Q  N  L  L  S  V  S  K  W  N  A  L  K  N  S  F  I  L  L  Y  P  S  Q  H  W  W  C  *  R  K  Y  H  P  A  S  P  P  S  L  Y  Q  Y  L  R  L  N  C  S  V  L  S  P  L  Q  E  S  L  K  G  *  C  H  G  I  Y  C  F  L  L  S  L  N  C  *  Y  P  R  T  Q  I  L  Y  L  L  E  N  C  H  V  F  P  Q  *  C  E  A  Y  H  P  L  E  M  M  A  L  E  R  G  F  H  </first_frame>
            <second_frame>  K  I  F  E  R  N  *  I  A  T  H  L  T  L  R  *  K  I  L  K  L  Q  F  Y  N  M  S  I  Y  M  W  H  V  V  N  R  L  K  L  Q  F  H  S  M  V  P  Y  L  Y  M  G  C  L  Q  E  N  E  S  S  T  N  E  Q  L  P  C  I  Y  P  Y  I  Y  M  G  C  L  Q  E  N  E  S  S  T  N  E  H  L  P  C  I  Y  P  Y  R  L  V  I  T  F  S  Y  F  D  S  I  N  Q  S  R  C  *  R  F  C  L  C  R  L  V  K  Y  V  F  A  F  Q  R  E  Y  L  T  S  G  K  H  K  *  E  K  R  K  T  V  A  L  V  *  S  F  Y  N  G  F  *  E  M  S  F  P  Y  R  I  Y  F  Q  S  A  S  G  T  P  *  K  T  V  S  F  C  Y  I  H  H  N  I  G  G  A  N  V  S  I  I  L  L  L  H  H  L  Y  I  S  I  S  V  *  T  A  V  F  Y  L  L  S  R  N  L  *  R  A  N  V  M  G  Y  I  A  F  C  C  P  *  I  A  S  T  L  G  H  K  F  C  T  C  W  K  I  V  M  F  S  L  S  S  V  K  P  T  I  P  *  K  *  W  H  W  R  G  V  S  T </second_frame>
            <third_frame>   K  Y  L  K  E  I  R  *  R  L  T  L  R  *  G  E  K  Y  *  S  Y  N  F  T  T  C  P  F  I  C  G  M  L  S  I  D  *  S  Y  N  F  T  V  W  S  L  T  Y  T  W  D  A  Y  R  K  M  S  P  A  Q  M  N  N  C  P  A  S  I  P  T  Y  T  W  G  A  Y  R  K  M  S  P  V  Q  M  N  T  C  P  A  S  I  P  T  D  L  *  S  L  F  H  T  L  I  R  S  I  N  Q  D  V  N  A  F  A  Y  A  G  *  *  S  M  F  S  R  F  K  G  S  T  *  R  V  E  N  T  N  K  K  K  G  K  Q  S  L  L  C  S  H  S  I  M  V  S  R  R  C  H  F  P  T  E  F  T  F  S  Q  Q  V  E  R  P  K  K  Q  F  H  S  A  I  S  I  T  T  L  V  V  L  T  *  V  S  S  C  F  S  T  I  S  I  S  V  S  P  F  K  L  Q  C  F  I  S  S  P  G  I  S  E  G  L  M  S  W  D  I  L  L  S  V  V  L  K  L  L  V  P  S  D  T  N  S  V  P  V  G  K  L  S  C  F  P  S  V  V  *  S  L  P  S  L  R  N  D  G  T  G  E  G  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112028" stop="112312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KILKLQFYNMSIYMWHVVNRLKLQFHSMVPYLYMGCLQENESSTNEQLPCIYPYIYMGCLQENESSTNEHLPCIYPYRLVITFSYFDSINQSRC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112548" stop="112742"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSSCFSTISISVSPFKLQCFISSPGISEGLMSWDILLSVVLKLLVPSDTNSVPVGKLSCFPSVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="119008" PGL_stop="112238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119008" e_stop="118889"/>
            <exon e_start="116290" e_stop="115846"/>
            <exon e_start="115057" e_stop="114925"/>
            <exon e_start="114840" e_stop="114767"/>
            <exon e_start="112938" e_stop="112238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.958"/>
          <exon-intron don_prob="0.924" acc_prob="0.999" e_score="0.978"/>
          <exon-intron don_prob="0.675" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="119008" e_stop="118889" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="118888" i_stop="116291" i_length="2598"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="116290" e_stop="115846" e_length="445"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115845" i_stop="115058" i_length="788"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115057" e_stop="114925" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.675" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114924" i_stop="114841" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114840" e_stop="114767" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114766" i_stop="112939" i_length="1828"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="112938" e_stop="112238" e_length="701"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119008" stop="118889"/>
              <exon start="116290" stop="115846"/>
              <exon start="115057" stop="114925"/>
              <exon start="114840" stop="114825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119008" stop="118889"/>
              <exon start="116290" stop="115846"/>
              <exon start="115057" stop="114943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116116" stop="115846"/>
              <exon start="115057" stop="114925"/>
              <exon start="114840" stop="114767"/>
              <exon start="112938" stop="112908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114824" stop="114767"/>
              <exon start="112938" stop="112238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114824" stop="114767"/>
              <exon start="112938" stop="112418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112869" stop="112578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112867" stop="112545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGGAAGAGACAACTAGTCCTCTTTTTGCCAAGGACATCGTATCTTGGTTTCCTGGATTGAAAGGTGGACGTGTTTGGAAGGAAGATCATGATTTGCTGCTGCTACGAGCAGTACTAAA : GCATGGTTATGGAAGATGGCAAGCTATTATCGATGACAAAGAGTTGAGAATCCAAGAAGTTGTCTGTAAAGAGCTGAATCTTCCTTCTATAACTTTACCAGTTCCTGGAGCTTCTCAGCCACAAGTTCCTCCTGCTCCTGGAGCTTCTCAGGCGCTTCCCGCTTCAGGGGTTTCACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGTCTGAATACAGCTAATGCTGGGACTTCTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGTACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTT : GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTT : CTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG : TAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTACGTTAGCACCACCAATGTTGTGATGGATATAGCAGAATGAAACTGTTTTTTAGGGCGTTCCACTTGCTGACTGAAAGTAAATTCTGTAGGGAAATGACATCTCCTAGAAACCATTATAGAATGACTACACAAGAGCGACTGTTTTCCTTTTTTCTTATTTGTGTTTTCCACTCGTCAAGTACTCCCTTTGAAACGCGAAAACATACTTTACTAACCTGCATAAGCAAAAGCGTTAACATCTTGATTGATTGATCGAATCAAAGTATGAAAAAGTGATCACAAGTCTGTAGGGATAGATGCAGGGCAA</gDNA_template>
            <first_frame> L  G  R  D  N  *  S  S  F  C  Q  G  H  R  I  L  V  S  W  I  E  R  W  T  C  L  E  G  R  S  *  F  A  A  A  T  S  S  T  K  :  A  W  L  W  K  M  A  S  Y  Y  R  *  Q  R  V  E  N  P  R  S  C  L  *  R  A  E  S  S  F  Y  N  F  T  S  S  W  S  F  S  A  T  S  S  S  C  S  W  S  F  S  G  A  S  R  F  R  G  F  T  S  F  C  S  R  S  L  S  S  T  K  W  S  E  Y  S  *  C  W  D  F  W  K  S  G  E  G  C  *  *  D  *  P  *  S  L  T  W  Y  K  R  S  F  K  Q  N  P  T  S  S  R  F  V  F  V  I  S  F  *  R  D  A  E  K  T  S  *  I  Y  K  E  K  G  D  A  S  *  E  C  N  *  C  *  V  S  E  R  R  C   : W  L  R  K  T  S  *  T  A  R  E  R  D  G  A  *  H  Q  D  C  R  R  T  K  S  K  C  *  G  S  W  H  *  N  G  *  *  F  P  K  T  Y  C  N  F :   S  T  G  N  L  *  N  C  L  *  W  *  S  G  S  F  E  C  C  S  A  L  Q  *   : V  A  S  Q  P  A  S  L  A  L  K  R  N  L  L  P  L  E  A  F  F  Q  E  M  K  R  V  L  S  S  A  H  Q  N  P  G  N  A  P  G  S  E  L  Q  E  D  W  K  P  E  G  G  N  P  S  P  V  P  S  F  L  R  D  G  R  L  H  T  T  E  G  K  H  D  N  F  P  T  G  T  E  F  V  S  E  G  T  S  N  L  R  T  T  E  S  N  I  S  H  D  I  S  P  S  E  I  P  G  E  E  I  K  H  C  S  L  N  G  D  T  D  I  E  M  V  E  K  Q  D  D  T  Y  V  S  T  T  N  V  V  M  D  I  A  E  *  N  C  F  L  G  R  S  T  C  *  L  K  V  N  S  V  G  K  *  H  L  L  E  T  I  I  E  *  L  H  K  S  D  C  F  P  F  F  L  F  V  F  S  T  R  Q  V  L  P  L  K  R  E  N  I  L  Y  *  P  A  *  A  K  A  L  T  S  *  L  I  D  R  I  K  V  *  K  S  D  H  K  S  V  G  I  D  A  G  Q </first_frame>
            <second_frame>  S  E  E  T  T  S  P  L  F  A  K  D  I  V  S  W  F  P  G  L  K  G  G  R  V  W  K  E  D  H  D  L  L  L  L  R  A  V  L  K :   H  G  Y  G  R  W  Q  A  I  I  D  D  K  E  L  R  I  Q  E  V  V  C  K  E  L  N  L  P  S  I  T  L  P  V  P  G  A  S  Q  P  Q  V  P  P  A  P  G  A  S  Q  A  L  P  A  S  G  V  S  Q  V  S  A  P  G  V  Y  Q  A  P  N  G  L  N  T  A  N  A  G  T  S  G  N  Q  V  K  A  A  D  E  T  N  H  E  V  S  H  G  T  S  D  P  S  N  R  T  Q  L  H  Q  D  S  S  L  L  Y  H  F  R  E  M  Q  R  R  Q  V  E  F  I  R  K  R  V  M  L  L  E  N  A  I  N  A  E  Y  Q  R  D  V  V  :  G  C  G  K  P  H  E  L  P  G  K  E  M  E  R  D  T  K  I  V  D  E  L  S  R  S  V  E  A  A  G  T  E  M  V  D  N  F  P  K  L  I  A  I   : S  P  Q  G  I  S  E  I  A  C  D  G  E  V  D  R  L  S  V  A  Q  L  Y  N  K  :  *  Q  V  S  Q  L  V  W  R  *  K  G  T  S  F  H  W  R  P  F  S  K  R  *  N  E  Y  F  L  P  R  I  R  I  L  V  M  L  Q  G  V  N  F  K  K  I  G  S  P  K  V  E  T  P  L  Q  C  H  H  F  *  G  M  V  G  F  T  L  L  R  E  N  M  T  I  F  Q  Q  V  Q  N  L  C  P  R  V  L  A  I  *  G  Q  Q  K  A  I  Y  P  M  T  L  A  L  Q  R  F  L  E  R  R  *  N  T  A  V  *  T  E  I  L  I  *  R  W  W  R  S  R  M  I  L  T  L  A  P  P  M  L  *  W  I  *  Q  N  E  T  V  F  *  G  V  P  L  A  D  *  K  *  I  L  *  G  N  D  I  S  *  K  P  L  *  N  D  Y  T  R  A  T  V  F  L  F  S  Y  L  C  F  P  L  V  K  Y  S  L  *  N  A  K  T  Y  F  T  N  L  H  K  Q  K  R  *  H  L  D  *  L  I  E  S  K  Y  E  K  V  I  T  S  L  *  G  *  M  Q  G   </second_frame>
            <third_frame>   R  K  R  Q  L  V  L  F  L  P  R  T  S  Y  L  G  F  L  D  *  K  V  D  V  F  G  R  K  I  M  I  C  C  C  Y  E  Q  Y  *   : S  M  V  M  E  D  G  K  L  L  S  M  T  K  S  *  E  S  K  K  L  S  V  K  S  *  I  F  L  L  *  L  Y  Q  F  L  E  L  L  S  H  K  F  L  L  L  L  E  L  L  R  R  F  P  L  Q  G  F  H  K  F  L  L  Q  E  S  I  K  H  Q  M  V  *  I  Q  L  M  L  G  L  L  E  I  R  *  R  L  L  M  R  L  T  M  K  S  H  M  V  Q  A  I  L  Q  T  E  P  N  F  I  K  I  R  L  C  Y  I  I  L  E  R  C  R  E  D  K  L  N  L  *  G  K  G  *  C  F  L  R  M  Q  L  M  L  S  I  R  E  T  L  L :   V  A  E  N  L  M  N  C  Q  G  K  R  W  S  V  T  P  R  L  *  T  N  *  V  E  V  L  R  Q  L  A  L  K  W  L  I  I  S  Q  N  L  L  Q  F  :  L  H  R  E  S  L  K  L  L  V  M  V  K  W  I  V  *  V  L  L  S  S  T  I  S :   S  K  S  A  S  *  S  G  V  K  K  E  P  P  S  T  G  G  L  F  P  R  D  E  T  S  T  F  F  R  A  S  E  S  W  *  C  S  R  E  *  T  S  R  R  L  E  A  R  R  W  K  P  L  S  S  A  I  I  S  K  G  W  *  A  S  H  Y  *  G  K  T  *  Q  F  S  N  R  Y  R  I  C  V  R  G  Y  *  Q  F  K  D  N  R  K  Q  Y  I  P  *  H  *  P  F  R  D  S  W  R  G  D  K  T  L  Q  F  K  R  R  Y  *  Y  R  D  G  G  E  A  G  *  Y  L  R  *  H  H  Q  C  C  D  G  Y  S  R  M  K  L  F  F  R  A  F  H  L  L  T  E  S  K  F  C  R  E  M  T  S  P  R  N  H  Y  R  M  T  T  Q  E  R  L  F  S  F  F  L  I  C  V  F  H  S  S  S  T  P  F  E  T  R  K  H  T  L  L  T  C  I  S  K  S  V  N  I  L  I  D  *  S  N  Q  S  M  K  K  *  S  Q  V  C  R  D  R  C  R  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119007" stop="118889"/>
                    <exon start="116290" stop="115846"/>
                    <exon start="115057" stop="114925"/>
                    <exon start="114840" stop="114767"/>
                    <exon start="112938" stop="112936"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEETTSPLFAKDIVSWFPGLKGGRVWKEDHDLLLLRAVLKHGYGRWQAIIDDKELRIQEVVCKELNLPSITLPVPGASQPQVPPAPGASQALPASGVSQVSAPGVYQAPNGLNTANAGTSGNQVKAADETNHEVSHGTSDPSNRTQLHQDSSLLYHFREMQRRQVEFIRKRVMLLENAINAEYQRDVVGCGKPHELPGKEMERDTKIVDELSRSVEAAGTEMVDNFPKLIAISPQGISEIACDGEVDRLSVAQLYNK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114767" stop="112505"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VASQPASLALKRNLLPLEAFFQEMKRVLSSAHQNPGNAPGSELQEDWKPEGGNPSPVPSFLRDGRLHTTEGKHDNFPTGTEFVSEGTSNLRTTESNISHDISPSEIPGEEIKHCSLNGDTDIEMVEKQDDTYVSTTNVVMDIAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="119008" e_stop="118889"/>
            <exon e_start="116290" e_stop="115846"/>
            <exon e_start="115057" e_stop="114925"/>
            <exon e_start="114840" e_stop="114767"/>
            <exon e_start="112984" e_stop="112545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.958"/>
          <exon-intron don_prob="0.924" acc_prob="0.999" e_score="0.978"/>
          <exon-intron don_prob="0.675" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="119008" e_stop="118889" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="118888" i_stop="116291" i_length="2598"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="116290" e_stop="115846" e_length="445"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115845" i_stop="115058" i_length="788"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115057" e_stop="114925" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.675" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114924" i_stop="114841" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114840" e_stop="114767" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114766" i_stop="112985" i_length="1782"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="112984" e_stop="112545" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119008" stop="118889"/>
              <exon start="116290" stop="115846"/>
              <exon start="115057" stop="114925"/>
              <exon start="114840" stop="114825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119008" stop="118889"/>
              <exon start="116290" stop="115846"/>
              <exon start="115057" stop="114943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115057" stop="114925"/>
              <exon start="114840" stop="114767"/>
              <exon start="112984" stop="112593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112869" stop="112578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112867" stop="112545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGGAAGAGACAACTAGTCCTCTTTTTGCCAAGGACATCGTATCTTGGTTTCCTGGATTGAAAGGTGGACGTGTTTGGAAGGAAGATCATGATTTGCTGCTGCTACGAGCAGTACTAAA : GCATGGTTATGGAAGATGGCAAGCTATTATCGATGACAAAGAGTTGAGAATCCAAGAAGTTGTCTGTAAAGAGCTGAATCTTCCTTCTATAACTTTACCAGTTCCTGGAGCTTCTCAGCCACAAGTTCCTCCTGCTCCTGGAGCTTCTCAGGCGCTTCCCGCTTCAGGGGTTTCACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGTCTGAATACAGCTAATGCTGGGACTTCTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGTACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTT : GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTT : CTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG : ATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTA</gDNA_template>
            <first_frame> L  G  R  D  N  *  S  S  F  C  Q  G  H  R  I  L  V  S  W  I  E  R  W  T  C  L  E  G  R  S  *  F  A  A  A  T  S  S  T  K  :  A  W  L  W  K  M  A  S  Y  Y  R  *  Q  R  V  E  N  P  R  S  C  L  *  R  A  E  S  S  F  Y  N  F  T  S  S  W  S  F  S  A  T  S  S  S  C  S  W  S  F  S  G  A  S  R  F  R  G  F  T  S  F  C  S  R  S  L  S  S  T  K  W  S  E  Y  S  *  C  W  D  F  W  K  S  G  E  G  C  *  *  D  *  P  *  S  L  T  W  Y  K  R  S  F  K  Q  N  P  T  S  S  R  F  V  F  V  I  S  F  *  R  D  A  E  K  T  S  *  I  Y  K  E  K  G  D  A  S  *  E  C  N  *  C  *  V  S  E  R  R  C   : W  L  R  K  T  S  *  T  A  R  E  R  D  G  A  *  H  Q  D  C  R  R  T  K  S  K  C  *  G  S  W  H  *  N  G  *  *  F  P  K  T  Y  C  N  F :   S  T  G  N  L  *  N  C  L  *  W  *  S  G  S  F  E  C  C  S  A  L  Q  *   : D  V  Q  G  T  F  *  L  W  *  R  F  I  *  C  S  S  K  S  A  S  *  S  G  V  K  K  E  P  P  S  T  G  G  L  F  P  R  D  E  T  S  T  F  F  R  A  S  E  S  W  *  C  S  R  E  *  T  S  R  R  L  E  A  R  R  W  K  P  L  S  S  A  I  I  S  K  G  W  *  A  S  H  Y  *  G  K  T  *  Q  F  S  N  R  Y  R  I  C  V  R  G  Y  *  Q  F  K  D  N  R  K  Q  Y  I  P  *  H  *  P  F  R  D  S  W  R  G  D  K  T  L  Q  F  K  R  R  Y  *  Y  R  D  G  G  E  A  G  *  Y  L </first_frame>
            <second_frame>  S  E  E  T  T  S  P  L  F  A  K  D  I  V  S  W  F  P  G  L  K  G  G  R  V  W  K  E  D  H  D  L  L  L  L  R  A  V  L  K :   H  G  Y  G  R  W  Q  A  I  I  D  D  K  E  L  R  I  Q  E  V  V  C  K  E  L  N  L  P  S  I  T  L  P  V  P  G  A  S  Q  P  Q  V  P  P  A  P  G  A  S  Q  A  L  P  A  S  G  V  S  Q  V  S  A  P  G  V  Y  Q  A  P  N  G  L  N  T  A  N  A  G  T  S  G  N  Q  V  K  A  A  D  E  T  N  H  E  V  S  H  G  T  S  D  P  S  N  R  T  Q  L  H  Q  D  S  S  L  L  Y  H  F  R  E  M  Q  R  R  Q  V  E  F  I  R  K  R  V  M  L  L  E  N  A  I  N  A  E  Y  Q  R  D  V  V  :  G  C  G  K  P  H  E  L  P  G  K  E  M  E  R  D  T  K  I  V  D  E  L  S  R  S  V  E  A  A  G  T  E  M  V  D  N  F  P  K  L  I  A  I   : S  P  Q  G  I  S  E  I  A  C  D  G  E  V  D  R  L  S  V  A  Q  L  Y  N  K  :  M  C  K  V  L  S  D  S  G  E  D  S  F  N  A  V  A  S  Q  P  A  S  L  A  L  K  R  N  L  L  P  L  E  A  F  F  Q  E  M  K  R  V  L  S  S  A  H  Q  N  P  G  N  A  P  G  S  E  L  Q  E  D  W  K  P  E  G  G  N  P  S  P  V  P  S  F  L  R  D  G  R  L  H  T  T  E  G  K  H  D  N  F  P  T  G  T  E  F  V  S  E  G  T  S  N  L  R  T  T  E  S  N  I  S  H  D  I  S  P  S  E  I  P  G  E  E  I  K  H  C  S  L  N  G  D  T  D  I  E  M  V  E  K  Q  D  D  T   </second_frame>
            <third_frame>   R  K  R  Q  L  V  L  F  L  P  R  T  S  Y  L  G  F  L  D  *  K  V  D  V  F  G  R  K  I  M  I  C  C  C  Y  E  Q  Y  *   : S  M  V  M  E  D  G  K  L  L  S  M  T  K  S  *  E  S  K  K  L  S  V  K  S  *  I  F  L  L  *  L  Y  Q  F  L  E  L  L  S  H  K  F  L  L  L  L  E  L  L  R  R  F  P  L  Q  G  F  H  K  F  L  L  Q  E  S  I  K  H  Q  M  V  *  I  Q  L  M  L  G  L  L  E  I  R  *  R  L  L  M  R  L  T  M  K  S  H  M  V  Q  A  I  L  Q  T  E  P  N  F  I  K  I  R  L  C  Y  I  I  L  E  R  C  R  E  D  K  L  N  L  *  G  K  G  *  C  F  L  R  M  Q  L  M  L  S  I  R  E  T  L  L :   V  A  E  N  L  M  N  C  Q  G  K  R  W  S  V  T  P  R  L  *  T  N  *  V  E  V  L  R  Q  L  A  L  K  W  L  I  I  S  Q  N  L  L  Q  F  :  L  H  R  E  S  L  K  L  L  V  M  V  K  W  I  V  *  V  L  L  S  S  T  I  R :   C  A  R  Y  F  L  T  L  V  K  I  H  L  M  Q  *  Q  V  S  Q  L  V  W  R  *  K  G  T  S  F  H  W  R  P  F  S  K  R  *  N  E  Y  F  L  P  R  I  R  I  L  V  M  L  Q  G  V  N  F  K  K  I  G  S  P  K  V  E  T  P  L  Q  C  H  H  F  *  G  M  V  G  F  T  L  L  R  E  N  M  T  I  F  Q  Q  V  Q  N  L  C  P  R  V  L  A  I  *  G  Q  Q  K  A  I  Y  P  M  T  L  A  L  Q  R  F  L  E  R  R  *  N  T  A  V  *  T  E  I  L  I  *  R  W  W  R  S  R  M  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119007" stop="118889"/>
                    <exon start="116290" stop="115846"/>
                    <exon start="115057" stop="114925"/>
                    <exon start="114840" stop="114767"/>
                    <exon start="112984" stop="112547"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1209</number_coding_nucleotides>
                  <number_encoded_amino_acids>403</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEETTSPLFAKDIVSWFPGLKGGRVWKEDHDLLLLRAVLKHGYGRWQAIIDDKELRIQEVVCKELNLPSITLPVPGASQPQVPPAPGASQALPASGVSQVSAPGVYQAPNGLNTANAGTSGNQVKAADETNHEVSHGTSDPSNRTQLHQDSSLLYHFREMQRRQVEFIRKRVMLLENAINAEYQRDVVGCGKPHELPGKEMERDTKIVDELSRSVEAAGTEMVDNFPKLIAISPQGISEIACDGEVDRLSVAQLYNKMCKVLSDSGEDSFNAVASQPASLALKRNLLPLEAFFQEMKRVLSSAHQNPGNAPGSELQEDWKPEGGNPSPVPSFLRDGRLHTTEGKHDNFPTGTEFVSEGTSNLRTTESNISHDISPSEIPGEEIKHCSLNGDTDIEMVEKQDDT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="113332" e_stop="112545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113332" e_stop="112545" e_length="788"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113332" stop="112713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112869" stop="112578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112867" stop="112545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTA</gDNA_template>
            <first_frame> K  *  K  F  K  V  E  N  I  F  K  K  H  N  *  F  F  G  E  G  V  G  L  K  D  R  K  I  P  W  Q  *  I  F  E  V  S  A  H  I  K  S  N  L  S  C  I  T  E  T  L  G  R  S  M  S  L  L  A  F  L  F  A  Y  G  T  K  *  S  I  H  V  E  L  *  G  A  A  T  T  T  H  I  F  N  Q  S  Y  L  P  E  Y  E  I  K  H  I  F  T  G  R  V  V  K  *  V  F  C  A  L  L  F  L  V  L  Q  M  C  K  V  L  S  D  S  G  E  D  S  F  N  A  V  A  S  Q  P  A  S  L  A  L  K  R  N  L  L  P  L  E  A  F  F  Q  E  M  K  R  V  L  S  S  A  H  Q  N  P  G  N  A  P  G  S  E  L  Q  E  D  W  K  P  E  G  G  N  P  S  P  V  P  S  F  L  R  D  G  R  L  H  T  T  E  G  K  H  D  N  F  P  T  G  T  E  F  V  S  E  G  T  S  N  L  R  T  T  E  S  N  I  S  H  D  I  S  P  S  E  I  P  G  E  E  I  K  H  C  S  L  N  G  D  T  D  I  E  M  V  E  K  Q  D  D  T   </first_frame>
            <second_frame>  N  K  N  L  K  L  K  I  F  L  K  S  I  I  N  F  L  G  R  G  W  G  *  K  T  E  K  F  H  G  S  R  Y  L  K  Y  Q  H  I  *  N  L  I  Y  H  A  *  Q  K  H  *  A  E  A  C  P  Y  L  H  F  F  L  H  M  G  Q  N  S  R  Y  M  *  N  C  K  V  Q  L  Q  Q  L  I  S  L  I  N  H  I  C  R  N  T  R  *  N  I  F  S  Q  E  G  L  *  S  R  C  F  V  L  Y  F  F  W  F  C  R  C  A  R  Y  F  L  T  L  V  K  I  H  L  M  Q  *  Q  V  S  Q  L  V  W  R  *  K  G  T  S  F  H  W  R  P  F  S  K  R  *  N  E  Y  F  L  P  R  I  R  I  L  V  M  L  Q  G  V  N  F  K  K  I  G  S  P  K  V  E  T  P  L  Q  C  H  H  F  *  G  M  V  G  F  T  L  L  R  E  N  M  T  I  F  Q  Q  V  Q  N  L  C  P  R  V  L  A  I  *  G  Q  Q  K  A  I  Y  P  M  T  L  A  L  Q  R  F  L  E  R  R  *  N  T  A  V  *  T  E  I  L  I  *  R  W  W  R  S  R  M  I  L  </second_frame>
            <third_frame>   I  K  I  *  S  *  K  Y  F  *  K  A  *  L  I  F  W  G  G  G  G  A  E  R  Q  K  N  S  M  A  V  D  I  *  S  I  S  T  Y  K  I  *  S  I  M  H  N  R  N  I  R  P  K  H  V  P  T  C  I  S  F  C  I  W  D  K  I  V  D  T  C  R  T  V  R  C  S  Y  N  N  S  Y  L  *  S  I  I  F  A  G  I  R  D  K  T  Y  F  H  R  K  G  C  E  V  G  V  L  C  F  T  F  F  G  F  A  D  V  Q  G  T  F  *  L  W  *  R  F  I  *  C  S  S  K  S  A  S  *  S  G  V  K  K  E  P  P  S  T  G  G  L  F  P  R  D  E  T  S  T  F  F  R  A  S  E  S  W  *  C  S  R  E  *  T  S  R  R  L  E  A  R  R  W  K  P  L  S  S  A  I  I  S  K  G  W  *  A  S  H  Y  *  G  K  T  *  Q  F  S  N  R  Y  R  I  C  V  R  G  Y  *  Q  F  K  D  N  R  K  Q  Y  I  P  *  H  *  P  F  R  D  S  W  R  G  D  K  T  L  Q  F  K  R  R  Y  *  Y  R  D  G  G  E  A  G  *  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113017" stop="112547"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFCALLFLVLQMCKVLSDSGEDSFNAVASQPASLALKRNLLPLEAFFQEMKRVLSSAHQNPGNAPGSELQEDWKPEGGNPSPVPSFLRDGRLHTTEGKHDNFPTGTEFVSEGTSNLRTTESNISHDISPSEIPGEEIKHCSLNGDTDIEMVEKQDDT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="139616" PGL_stop="140418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139616" e_stop="140418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="139616" e_stop="140418" e_length="803"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139616" stop="140256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139616" stop="140202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139617" stop="139889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139617" stop="139879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139642" stop="140418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378787" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCACAAGGGAGAAGGTGAAGTATCAACGCCCTAAAACTTATATTGTGTGGCAATTTATGACTTTCGATAAAGAAAATAGTGTTGCTATTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGTGGGGGTCAAGGTGGGACGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAAGCTAAAGCATTAGCCAATAGAAAAAAAGGAATTTCAATTGATGAATTTGATATTACCGGTAGTGCATCGGTAGGGGCTTCTCACATAGTTCAAGGAACATTAGATCTTTCTAGCCCCGGTGGTCCAATAACACAACGTAAATATAATAAGGAATTTGATCGCGAAAATTTAGCTAAAATGGTTTCTGTTTGTAGTTTGCCTTATAGTTTTACTTCATATCCCGATTTTATTGAATAAATTTAACAAACTTATAATCCGAATTATAGAGGTTTTCAAGAAATACTGTTAAACATGATGTTTTTGAATTTCAAGGTAAACATTGTTAATTTCTTCGTTGTATATTTAGCATATTATATAGTAGAGTGTCTATAACTACGGATATGGGTCGTAGTGTCAATGGAAATGATTATTTAACTGTTTCAACTCATTGGATTGATCATAATTGGAATTTGCAAAAAAGAATATTAAGTTATACACTATGTGTAGAGAAAAAACTGGTGCATACTTAGCTTCAAAAATTTTAAGTGTTTTAGATTATTACATGGTTACAGATAAAGTAATGTCTGTTGCATTAGATAATGCATCTAACAATACAAACGCTTC</gDNA_template>
            <first_frame> L  S  Q  G  R  R  *  S  I  N  A  L  K  L  I  L  C  G  N  L  *  L  S  I  K  K  I  V  L  L  F  C  N  K  C  K  Q  P  F  K  H  K  Q  G  G  G  Q  G  G  T  G  D  *  I  D  I  C  Y  L  V  C  R  F  N  I  K  K  L  K  H  *  P  I  E  K  K  E  F  Q  L  M  N  L  I  L  P  V  V  H  R  *  G  L  L  T  *  F  K  E  H  *  I  F  L  A  P  V  V  Q  *  H  N  V  N  I  I  R  N  L  I  A  K  I  *  L  K  W  F  L  F  V  V  C  L  I  V  L  L  H  I  P  I  L  L  N  K  F  N  K  L  I  I  R  I  I  E  V  F  K  K  Y  C  *  T  *  C  F  *  I  S  R  *  T  L  L  I  S  S  L  Y  I  *  H  I  I  *  *  S  V  Y  N  Y  G  Y  G  S  *  C  Q  W  K  *  L  F  N  C  F  N  S  L  D  *  S  *  L  E  F  A  K  K  N  I  K  L  Y  T  M  C  R  E  K  T  G  A  Y  L  A  S  K  I  L  S  V  L  D  Y  Y  M  V  T  D  K  V  M  S  V  A  L  D  N  A  S  N  N  T  N  A   </first_frame>
            <second_frame>  S  H  K  G  E  G  E  V  S  T  P  *  N  L  Y  C  V  A  I  Y  D  F  R  *  R  K  *  C  C  Y  F  V  I  S  V  S  N  L  L  N  I  N  K  V  G  V  K  V  G  R  G  I  K  *  T  F  V  I  L  C  A  D  S  I  *  R  S  *  S  I  S  Q  *  K  K  R  N  F  N  *  *  I  *  Y  Y  R  *  C  I  G  R  G  F  S  H  S  S  R  N  I  R  S  F  *  P  R  W  S  N  N  T  T  *  I  *  *  G  I  *  S  R  K  F  S  *  N  G  F  C  L  *  F  A  L  *  F  Y  F  I  S  R  F  Y  *  I  N  L  T  N  L  *  S  E  L  *  R  F  S  R  N  T  V  K  H  D  V  F  E  F  Q  G  K  H  C  *  F  L  R  C  I  F  S  I  L  Y  S  R  V  S  I  T  T  D  M  G  R  S  V  N  G  N  D  Y  L  T  V  S  T  H  W  I  D  H  N  W  N  L  Q  K  R  I  L  S  Y  T  L  C  V  E  K  K  L  V  H  T  *  L  Q  K  F  *  V  F  *  I  I  T  W  L  Q  I  K  *  C  L  L  H  *  I  M  H  L  T  I  Q  T  L  </second_frame>
            <third_frame>   L  T  R  E  K  V  K  Y  Q  R  P  K  T  Y  I  V  W  Q  F  M  T  F  D  K  E  N  S  V  A  I  L  *  *  V  *  A  T  F  *  T  *  T  R  W  G  S  R  W  D  G  G  L  N  R  H  L  L  S  C  V  P  I  Q  Y  K  E  A  K  A  L  A  N  R  K  K  G  I  S  I  D  E  F  D  I  T  G  S  A  S  V  G  A  S  H  I  V  Q  G  T  L  D  L  S  S  P  G  G  P  I  T  Q  R  K  Y  N  K  E  F  D  R  E  N  L  A  K  M  V  S  V  C  S  L  P  Y  S  F  T  S  Y  P  D  F  I  E  *  I  *  Q  T  Y  N  P  N  Y  R  G  F  Q  E  I  L  L  N  M  M  F  L  N  F  K  V  N  I  V  N  F  F  V  V  Y  L  A  Y  Y  I  V  E  C  L  *  L  R  I  W  V  V  V  S  M  E  M  I  I  *  L  F  Q  L  I  G  L  I  I  I  G  I  C  K  K  E  Y  *  V  I  H  Y  V  *  R  K  N  W  C  I  L  S  F  K  N  F  K  C  F  R  L  L  H  G  Y  R  *  S  N  V  C  C  I  R  *  C  I  *  Q  Y  K  R  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139741" stop="140052"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRWGSRWDGGLNRHLLSCVPIQYKEAKALANRKKGISIDEFDITGSASVGASHIVQGTLDLSSPGGPITQRKYNKEFDRENLAKMVSVCSLPYSFTSYPDFIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="140848" PGL_stop="141472"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140848" e_stop="141472"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="140848" e_stop="141472" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140848" stop="141472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262684" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTATCCTACTATTTTATCAGTATTAATAAATATTTGTGCTCTTACAATTCAATTTTCTAAATATAAAAAAATAGATAAATTTAAAGTTGCAATTGAAGGTATGATTGAAAAATTAAAAAAATATTTTTTTCTTATTCCTCAAATTTATTTAACTGCTACTTTACTTTCATCCTGATTATAAATTACGAGGTGTGCAGGGCCTTATTGACACTTTTTGTGAAACTTAAGAAATTTTACCTAAAGAAATTCCAAATTGTGAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAAATTTTGTATAAAAAATATAGAACTAGTGAAAATATTGAAGGAGAAGTTGGTCAAACTTCTAATCAAGATATTGATTTTGAAGTTCGAATTTCAACTTATATGAGAGGTTTTCTTTGTCTTAATTCTACTAACCGTGATGATTTAGAAGAATATATTAATCAATCTTTAGAAGTATTTGAAATCAAAGATGGCAATGAAGATTTATTAGGATGTGTAGTAGGCGAACCGTTGCATTTCCAACTTTGAGCAAAATGATTTGTGATGTTCTAGTTATTCAAGCTTCATCAGTTGCATTGGATGCTGCTTTCAGTGCGGCAAGGTTTCAAATTG</gDNA_template>
            <first_frame> Y  Y  P  T  I  L  S  V  L  I  N  I  C  A  L  T  I  Q  F  S  K  Y  K  K  I  D  K  F  K  V  A  I  E  G  M  I  E  K  L  K  K  Y  F  F  L  I  P  Q  I  Y  L  T  A  T  L  L  S  S  *  L  *  I  T  R  C  A  G  P  Y  *  H  F  L  *  N  L  R  N  F  T  *  R  N  S  K  L  *  N  V  *  V  *  H  K  S  R  S  K  N  F  V  *  K  I  *  N  *  *  K  Y  *  R  R  S  W  S  N  F  *  S  R  Y  *  F  *  S  S  N  F  N  L  Y  E  R  F  S  L  S  *  F  Y  *  P  *  *  F  R  R  I  Y  *  S  I  F  R  S  I  *  N  Q  R  W  Q  *  R  F  I  R  M  C  S  R  R  T  V  A  F  P  T  L  S  K  M  I  C  D  V  L  V  I  Q  A  S  S  V  A  L  D  A  A  F  S  A  A  R  F  Q  I  </first_frame>
            <second_frame>  I  I  L  L  F  Y  Q  Y  *  *  I  F  V  L  L  Q  F  N  F  L  N  I  K  K  *  I  N  L  K  L  Q  L  K  V  *  L  K  N  *  K  N  I  F  F  L  F  L  K  F  I  *  L  L  L  Y  F  H  P  D  Y  K  L  R  G  V  Q  G  L  I  D  T  F  C  E  T  *  E  I  L  P  K  E  I  P  N  C  E  T  C  K  S  S  I  K  V  E  A  K  I  L  Y  K  K  Y  R  T  S  E  N  I  E  G  E  V  G  Q  T  S  N  Q  D  I  D  F  E  V  R  I  S  T  Y  M  R  G  F  L  C  L  N  S  T  N  R  D  D  L  E  E  Y  I  N  Q  S  L  E  V  F  E  I  K  D  G  N  E  D  L  L  G  C  V  V  G  E  P  L  H  F  Q  L  *  A  K  *  F  V  M  F  *  L  F  K  L  H  Q  L  H  W  M  L  L  S  V  R  Q  G  F  K  L </second_frame>
            <third_frame>   L  S  Y  Y  F  I  S  I  N  K  Y  L  C  S  Y  N  S  I  F  *  I  *  K  N  R  *  I  *  S  C  N  *  R  Y  D  *  K  I  K  K  I  F  F  S  Y  S  S  N  L  F  N  C  Y  F  T  F  I  L  I  I  N  Y  E  V  C  R  A  L  L  T  L  F  V  K  L  K  K  F  Y  L  K  K  F  Q  I  V  K  R  V  S  L  A  *  K  *  K  Q  K  F  C  I  K  N  I  E  L  V  K  I  L  K  E  K  L  V  K  L  L  I  K  I  L  I  L  K  F  E  F  Q  L  I  *  E  V  F  F  V  L  I  L  L  T  V  M  I  *  K  N  I  L  I  N  L  *  K  Y  L  K  S  K  M  A  M  K  I  Y  *  D  V  *  *  A  N  R  C  I  S  N  F  E  Q  N  D  L  *  C  S  S  Y  S  S  F  I  S  C  I  G  C  C  F  Q  C  G  K  V  S  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141077" stop="141388"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EILPKEIPNCETCKSSIKVEAKILYKKYRTSENIEGEVGQTSNQDIDFEVRISTYMRGFLCLNSTNRDDLEEYINQSLEVFEIKDGNEDLLGCVVGEPLHFQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="157114" PGL_stop="156611"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="157114" e_stop="156611"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="157114" e_stop="156611" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157114" stop="156611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCCAGTGTTAGCTGTACACGGGTTTATGATGTTTCTGGCTTGGGGAATATTGCTGCCAGGTGGTATTTTAGCTGCTAGATATTTGAAACATATCAAGGGAGATGGGTGGTTTCAGATTCATGTTTATCTACAGTATTCCGGATTATCGATTGTCTTCCTTGGTTTTCTCTTTGCTGTAGCCGAACTTCGCGGTTTGAGTTTCAGCTCCCTTCATGTTAAGTTTGGAATGCTGGCCATAGTTCTTGCTATTGCACAACCCATTAATGCATACCTACGACCTAAGAAACCTGGAGCAGGAGAGGAGGTTTCTTCAAACCGGCGTGTTTGGGAGTATATCCATGTCATTGTGGGCAGGGGTGCCATTGTTGTCGGCATTGCAGCTCTTATAACAGGAATGAAGCATCTAGGAGAGAGGTACGGTGATGAAGATGTTCATAGGCTGATGTGGGCTCTAATTCTGTGGATTCTTGTTGGCGTTTTGACAGTGATGTATCTGGAGTATC</gDNA_template>
            <first_frame> G  Q  C  *  L  Y  T  G  L  *  C  F  W  L  G  E  Y  C  C  Q  V  V  F  *  L  L  D  I  *  N  I  S  R  E  M  G  G  F  R  F  M  F  I  Y  S  I  P  D  Y  R  L  S  S  L  V  F  S  L  L  *  P  N  F  A  V  *  V  S  A  P  F  M  L  S  L  E  C  W  P  *  F  L  L  L  H  N  P  L  M  H  T  Y  D  L  R  N  L  E  Q  E  R  R  F  L  Q  T  G  V  F  G  S  I  S  M  S  L  W  A  G  V  P  L  L  S  A  L  Q  L  L  *  Q  E  *  S  I  *  E  R  G  T  V  M  K  M  F  I  G  *  C  G  L  *  F  C  G  F  L  L  A  F  *  Q  *  C  I  W  S  I </first_frame>
            <second_frame>  A  S  V  S  C  T  R  V  Y  D  V  S  G  L  G  N  I  A  A  R  W  Y  F  S  C  *  I  F  E  T  Y  Q  G  R  W  V  V  S  D  S  C  L  S  T  V  F  R  I  I  D  C  L  P  W  F  S  L  C  C  S  R  T  S  R  F  E  F  Q  L  P  S  C  *  V  W  N  A  G  H  S  S  C  Y  C  T  T  H  *  C  I  P  T  T  *  E  T  W  S  R  R  G  G  F  F  K  P  A  C  L  G  V  Y  P  C  H  C  G  Q  G  C  H  C  C  R  H  C  S  S  Y  N  R  N  E  A  S  R  R  E  V  R  *  *  R  C  S  *  A  D  V  G  S  N  S  V  D  S  C  W  R  F  D  S  D  V  S  G  V   </second_frame>
            <third_frame>   P  V  L  A  V  H  G  F  M  M  F  L  A  W  G  I  L  L  P  G  G  I  L  A  A  R  Y  L  K  H  I  K  G  D  G  W  F  Q  I  H  V  Y  L  Q  Y  S  G  L  S  I  V  F  L  G  F  L  F  A  V  A  E  L  R  G  L  S  F  S  S  L  H  V  K  F  G  M  L  A  I  V  L  A  I  A  Q  P  I  N  A  Y  L  R  P  K  K  P  G  A  G  E  E  V  S  S  N  R  R  V  W  E  Y  I  H  V  I  V  G  R  G  A  I  V  V  G  I  A  A  L  I  T  G  M  K  H  L  G  E  R  Y  G  D  E  D  V  H  R  L  M  W  A  L  I  L  W  I  L  V  G  V  L  T  V  M  Y  L  E  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="157112" stop="156612"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVLAVHGFMMFLAWGILLPGGILAARYLKHIKGDGWFQIHVYLQYSGLSIVFLGFLFAVAELRGLSFSSLHVKFGMLAIVLAIAQPINAYLRPKKPGAGEEVSSNRRVWEYIHVIVGRGAIVVGIAALITGMKHLGERYGDEDVHRLMWALILWILVGVLTVMYLEY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="158239" PGL_stop="157526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="158239" e_stop="157526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="158239" e_stop="157526" e_length="714"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="158239" stop="157526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706298" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTGAAGTCCATGGATACTAAGTATGATTTGCAATTGAATCAAAATGCTACAATGAGAGTGATATGGGCTTTAGGTTTGATAAAACCTCCGGATAGTCTTCGGCCTTTTTATCTCCCACAAAATCATGGTGGTAGCTATGGGCACTTGACACTGAATGTCTCGGAACATATTGATGATTGCTTGGGGCCGCTGGATGCAGAAGATAAACAAGATCAAGACCTTGTCATTGCAGATAAAAAAGGACCACTTGTTGTTTCAACAGGTCCAGCTGTGTTCTACCCAAATCCTCCAAACCCTTCTAAAGTTCTCTACATTAACAAGAAAGAGGCACCCCTTCTCAGGGTAGAGAGGGGTGTTCAAGTAAAGTTTTCAATTCAGGCTGGGCATGATGTTGCCTTCTATATAACCTCAGATCCACTTGGTGGAAATGCTACATTGAGGAATATGTCAGAGACCATCTACTTTGGGGGACCTGAAGCACAAGGAGTTCAAGCCACTCCCACAGAATTAGTTTGGGCTCCTGACCGGAACACGCCAGATTTAGTTTACTATCAGTCTCTATATGCTCAGAAAATGGGGTGGAAAGTTCAAGTGGTTGATGCAGGCTTACCTGATATGTATAACAGCAGCGTAGTTCTGGATGATCAGCAGGTTACTTTCTTTTGGACGTTGGCTGAAAATTCAATCTCCATTGCAGCTCGAGGGGAGAAAA</gDNA_template>
            <first_frame> H  *  S  P  W  I  L  S  M  I  C  N  *  I  K  M  L  Q  *  E  *  Y  G  L  *  V  *  *  N  L  R  I  V  F  G  L  F  I  S  H  K  I  M  V  V  A  M  G  T  *  H  *  M  S  R  N  I  L  M  I  A  W  G  R  W  M  Q  K  I  N  K  I  K  T  L  S  L  Q  I  K  K  D  H  L  L  F  Q  Q  V  Q  L  C  S  T  Q  I  L  Q  T  L  L  K  F  S  T  L  T  R  K  R  H  P  F  S  G  *  R  G  V  F  K  *  S  F  Q  F  R  L  G  M  M  L  P  S  I  *  P  Q  I  H  L  V  E  M  L  H  *  G  I  C  Q  R  P  S  T  L  G  D  L  K  H  K  E  F  K  P  L  P  Q  N  *  F  G  L  L  T  G  T  R  Q  I  *  F  T  I  S  L  Y  M  L  R  K  W  G  G  K  F  K  W  L  M  Q  A  Y  L  I  C  I  T  A  A  *  F  W  M  I  S  R  L  L  S  F  G  R  W  L  K  I  Q  S  P  L  Q  L  E  G  R  K </first_frame>
            <second_frame>  I  E  V  H  G  Y  *  V  *  F  A  I  E  S  K  C  Y  N  E  S  D  M  G  F  R  F  D  K  T  S  G  *  S  S  A  F  L  S  P  T  K  S  W  W  *  L  W  A  L  D  T  E  C  L  G  T  Y  *  *  L  L  G  A  A  G  C  R  R  *  T  R  S  R  P  C  H  C  R  *  K  R  T  T  C  C  F  N  R  S  S  C  V  L  P  K  S  S  K  P  F  *  S  S  L  H  *  Q  E  R  G  T  P  S  Q  G  R  E  G  C  S  S  K  V  F  N  S  G  W  A  *  C  C  L  L  Y  N  L  R  S  T  W  W  K  C  Y  I  E  E  Y  V  R  D  H  L  L  W  G  T  *  S  T  R  S  S  S  H  S  H  R  I  S  L  G  S  *  P  E  H  A  R  F  S  L  L  S  V  S  I  C  S  E  N  G  V  E  S  S  S  G  *  C  R  L  T  *  Y  V  *  Q  Q  R  S  S  G  *  S  A  G  Y  F  L  L  D  V  G  *  K  F  N  L  H  C  S  S  R  G  E   </second_frame>
            <third_frame>   L  K  S  M  D  T  K  Y  D  L  Q  L  N  Q  N  A  T  M  R  V  I  W  A  L  G  L  I  K  P  P  D  S  L  R  P  F  Y  L  P  Q  N  H  G  G  S  Y  G  H  L  T  L  N  V  S  E  H  I  D  D  C  L  G  P  L  D  A  E  D  K  Q  D  Q  D  L  V  I  A  D  K  K  G  P  L  V  V  S  T  G  P  A  V  F  Y  P  N  P  P  N  P  S  K  V  L  Y  I  N  K  K  E  A  P  L  L  R  V  E  R  G  V  Q  V  K  F  S  I  Q  A  G  H  D  V  A  F  Y  I  T  S  D  P  L  G  G  N  A  T  L  R  N  M  S  E  T  I  Y  F  G  G  P  E  A  Q  G  V  Q  A  T  P  T  E  L  V  W  A  P  D  R  N  T  P  D  L  V  Y  Y  Q  S  L  Y  A  Q  K  M  G  W  K  V  Q  V  V  D  A  G  L  P  D  M  Y  N  S  S  V  V  L  D  D  Q  Q  V  T  F  F  W  T  L  A  E  N  S  I  S  I  A  A  R  G  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="158237" stop="157527"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKSMDTKYDLQLNQNATMRVIWALGLIKPPDSLRPFYLPQNHGGSYGHLTLNVSEHIDDCLGPLDAEDKQDQDLVIADKKGPLVVSTGPAVFYPNPPNPSKVLYINKKEAPLLRVERGVQVKFSIQAGHDVAFYITSDPLGGNATLRNMSETIYFGGPEAQGVQATPTELVWAPDRNTPDLVYYQSLYAQKMGWKVQVVDAGLPDMYNSSVVLDDQQVTFFWTLAENSISIAARGEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="169303" PGL_stop="173400"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="169303" e_stop="169583"/>
            <exon e_start="172942" e_stop="173145"/>
            <exon e_start="173219" e_stop="173400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="169303" e_stop="169583" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.863">
            <gDNA_intron_boundary i_start="169584" i_stop="172941" i_length="3358"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="172942" e_stop="173145" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.932">
            <gDNA_intron_boundary i_start="173146" i_stop="173218" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="173219" e_stop="173400" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="169303" stop="169583"/>
              <exon start="172942" stop="173145"/>
              <exon start="173219" stop="173332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="169325" stop="169583"/>
              <exon start="172942" stop="173145"/>
              <exon start="173219" stop="173400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGCTCACTTGTTCTTCTAGGGTTTCACAAGATCTCTTTTGCCTCTGCAAAACACGAGCGAATTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAGTGATTTGAGGGTATAAATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGATGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTGAGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGAC : CAAGTAGAGTCTTCCCTGTCTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGGCATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTTCGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGACGACAAAATGAAG : GATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCAGATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTTGTCATGCTGGATCTAGAATGTGATGGGCTCATCGCTGAGATGTTTCAGCACTTCCTTAAAGCTATAAG</gDNA_template>
            <first_frame> K  S  S  L  V  L  L  G  F  H  K  I  S  F  A  S  A  K  H  E  R  I  A  I  S  R  V  T  I  C  V  C  S  G  V  *  W  S  E  E  *  F  E  G  I  N  L  D  F  F  W  K  I  L  K  R  E  R  K  R  W  R  L  L  T  K  S  L  K  S  R  L  L  L  L  G  T  S  *  L  S  L  L  L  H  L  K  N  S  S  V  C  L  T :   K  *  S  L  P  C  L  K  W  S  S  H  Q  R  N  Q  C  M  M  H  F  L  H  *  *  R  H  W  L  Q  M  I  S  *  G  I  L  M  L  M  *  R  S  Q  L  L  R  V  L  V  R  *  L  E  L  L  H  Q  T  L  H  M  M  T  T  K  *  R :   I  S  F  N  *  L  C  R  L  L  R  I  W  M  T  S  L  A  D  L  I  I  R  G  *  *  S  L  R  Q  W  P  R  S  G  H  V  L  S  C  W  I  *  N  V  M  G  S  S  L  R  C  F  S  T  S  L  K  L  *  </first_frame>
            <second_frame>  K  A  H  L  F  F  *  G  F  T  R  S  L  L  P  L  Q  N  T  S  E  L  R  F  L  G  L  R  F  V  F  V  R  V  F  D  G  P  R  S  D  L  R  V  *  I  L  I  F  S  G  R  F  *  R  E  K  G  N  D  G  A  F  *  Q  R  A  *  R  A  D  C  C  C  W  E  Q  A  D  *  A  S  F  F  T  *  R  T  P  P  F  A  *   : P  S  R  V  F  P  V  *  S  G  A  V  T  S  E  I  N  A  *  C  T  F  S  I  D  E  G  I  G  C  K  *  S  L  E  A  F  *  C  *  C  E  G  R  S  C  F  V  Y  *  *  D  N  *  N  Y  C  T  R  R  S  I  *  *  R  Q  N  E   : G  Y  L  S  I  N  C  V  V  F  *  E  S  G  *  P  V  *  Q  I  L  *  *  E  G  D  D  P  *  D  S  G  Q  G  Q  V  M  C  C  H  A  G  S  R  M  *  W  A  H  R  *  D  V  S  A  L  P  *  S  Y  K </second_frame>
            <third_frame>   K  L  T  C  S  S  R  V  S  Q  D  L  F  C  L  C  K  T  R  A  N  C  D  F  *  G  Y  D  L  C  L  F  G  C  L  M  V  R  G  V  I  *  G  Y  K  S  *  F  F  L  E  D  F  E  E  R  K  E  T  M  A  P  F  D  K  E  L  E  E  Q  I  A  V  A  G  N  K  L  I  E  P  P  S  S  L  E  E  L  L  R  L  L  D  :  Q  V  E  S  S  L  S  K  V  E  Q  S  P  A  K  S  M  H  D  A  L  S  P  L  M  K  A  L  V  A  N  D  L  L  R  H  S  D  V  D  V  K  V  A  V  A  S  C  I  S  E  I  T  R  I  T  A  P  D  A  P  Y  D  D  D  K  M  K  :  D  I  F  Q  L  I  V  S  S  F  E  N  L  D  D  Q  S  S  R  S  Y  N  K  R  V  M  I  L  E  T  V  A  K  V  R  S  C  V  V  M  L  D  L  E  C  D  G  L  I  A  E  M  F  Q  H  F  L  K  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0030C09.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="169446" stop="169583"/>
                    <exon start="172942" stop="173145"/>
                    <exon start="173219" stop="173398"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLEDFEERKETMAPFDKELEEQIAVAGNKLIEPPSSLEELLRLLDQVESSLSKVEQSPAKSMHDALSPLMKALVANDLLRHSDVDVKVAVASCISEITRITAPDAPYDDDKMKDIFQLIVSSFENLDDQSSRSYNKRVMILETVAKVRSCVVMLDLECDGLIAEMFQHFLKAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 192 chains have been computed
$ 
$ memory statistics:
$ 338424 bytes spliced alignments in total
$ 103 spliced alignments have been stored
$ 3285 bytes was the average size of a spliced alignment
$ 30024 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1501 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 222 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:30:17
-->
