<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:06:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U599792" ref_strand="+" ref_description="SGN-U599792 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tattgtaanccctactatatgcttaattgtatgtttgcntgantatgattatgtgattgtgataagataaacatgatgaaaatattgaatcccaaatcttgaaaggaaactttaatatacnttattaatgatgatgccttggtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="-" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="11859" stop="11114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11559" g_stop="11414" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="-" ref_id="SGN-U599792" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>146</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11559" e_stop="11414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTAATAACATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTTGTATA</genome_strand>
        <mrna_strand>TATTGTAANCCCTACTATATGCTTAATTGTATGTTTGCNTGANTATGATTATGTGATTGTGATAAGATAAACATGATGAAAATATTGAATCCCAAATCTTGAAAGGAAACTTTAATATACNTTATTAATGATGATGCCTTGGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="14003" stop="15419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14307" g_stop="15119" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14307" e_stop="15119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGACGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGGTTCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGTCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCGTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACACTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATATAGAAGTCAATATCCCTATCTGATGGCATACCAGGAAGATCTG</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="-" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="17278" stop="14136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16979" g_stop="16107" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16106" i_stop="15000" i_length="1107">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14999" g_stop="14436" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1436" r_length="563" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="-" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16979" e_stop="16107"/>
          <exon e_start="14999" e_stop="14436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGAGGACATCCTCTGGGGGATGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTAACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTTCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTAATCAGGGCCAGACACCCCCAGTGTTTTTTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAAGCACATTTCCTCGTCTGCCTACAGGGCCTGTAATGACAAGTGATAAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTAGTACACAAGATGGGTATAGTAGAATGGTTCGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACTCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCGTTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAACAACGGATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGGTCGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGTCAGACGACTTCACCACAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTTACTACAGACTGTAGTTGGGGGACCACCTCAAACCGGTCAACACTTCTACGAGGGGCCTATGATTGACTCCAGAGAATGTTATGGATGGGGAGATTGAACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGAACGTGGCGGTCGAGGTAATGGTGGTCACCAAAATGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGAGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGCGGTAAAGGTATATAGGTCTTGTGTGGTAAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTTGGCAATGGATGATTTTGATGTGATTCTGGGCATGACTTGGCTTTCTCTGCAATTTGCAATCTTGGATTGTAATGCTAAAAAGGTGACGTTAGCCAAGCCTGGGATAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTTAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCATCAGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGTGTTAAAGGCACAACTTCAAGAGTTATTGAACAAACGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCTGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGACATTACGAATTTGTAGTGATGTCCTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATTTGAACCTCTTTGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAACATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCGTCTTGGGGCACGTGGTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U578865" ref_strand="+" ref_description="SGN-U578865 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=8e-164) Polyprotein,; (*SWP) sp|Q99315|YG31B_YEAST (e_value=2e-17) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>aagaacagcgacaaggggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcgcctagcccatctgatactagggcagtgactcctccaccgactgaggaagtaataagagaaggggaggatggggaaactgaacaagtgcagaatgagggattgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttatctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatcggaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttgggcctcattctctagcttgtttatggagaagtatatcccccgaactttgagggataggaaaagggatgagttcttgagcctagagcaaggtaggatgtcggtcaatgcatatgaggctaagtttcgtgcattatcccggtatgccacccaactgtgtttcagtccacaagagcgaattcgccggtttgtgaaggggttgaggtcagaattgcagatttcggccttacaaatagcggcaacgacaaaatccttccaagaggtggtagactttgtgatagaagtggaaggagtgaagccagacgacttcatcccgacatcgacatcaaaaaggtttcgaaagggaggtgagtttaatggtgcttacactagaggacagggttagggaagttactcagtccgaccaattcagtcttcactacagactgtagttgggggtccacctccgaccggtcaacacttctctgagagacctatgcatgaacccagagagtgctatggatgtggggagattggacatattaagagatattgtccaaaacagagttacagacctccaaaggttagaggtagaggtggtcatggcagaggccgttattctggaggacgtggcggtcgaggaaatggtggtcaccaaaacggccgaggtgatgggaaaactggagccactacatcacaacaaggtaggggcaacagacagaagaacgatagggcccattgttacgctttccctgggcggtctgaagcggaggaatctgatgctgtcatcacaggtaatcttttggtttgtgattgcatggcttctgtattgtttgatcctggatccacgttttcttatgtatcttcctcatttgctaacggtctaaatttacattgtgaattacttgatatgcctattcgtgtttctactccggtgggtgagtctgtggtagttgaaaaggtatataggtcttgtttggtgaactttgtggggagcaacacttatgtagatttggttatcttagaaatggttgattttgatgtaattctgggtatgacttggctttctccgcaatttgcgatcttggattgtaatgctaaaacggtgacattagccaagcctgggacagatccgttagtgtgggagggtgactacacttccaatccggtgcgcatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggatgacactacccaagtaccttcgattgagtcggtttctatagtctgtgagtttttggatgtgttccctgcagatcttcctggtatgccaccagatagggatattgacttctgtatcgatcttgaaccgggcacacgccccatttctatacccccttatagaatggctcccgtagagttaagagagttaaaggcccaacttcaagagttgttgagcaaaggtttcattagaccaagtgcatctccttggggtgctccgattttgtttgtgaagaagaaggatgggagttttagaatgtgcatagactacagacaactgaacaaggtaactattaagaacaagtatcctcttcctcgcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="-" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="17309" stop="14527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17009" g_stop="14826" g_length="2184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2192" r_length="2192" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="-" ref_id="SGN-U578865" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>2184</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17009" e_stop="14826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGCGTCAAGGGGCCGTGGTAGAGGTCGTGGGAGGACATCCTCTGGGGGATGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTAACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTTCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTAATCAGGGCCAGACACCCCCAGTGTTTTTTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAAGCACATTTCCTCGTCTGCCTACAGGGCCTGTAATGACAAGTGATAAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTAGTACACAAGATGGGTATAGTAGAATGGTTCGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACTCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCGTTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAACAACGGATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGGTCGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGTCAGACGACTTCACCACAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTTACTACAGACTGTAGTTGGGGGACCACCTCAAACCGGTCAACACTTCTACGAGGGGCCTATGATTGACTCCAGAGAATGTTATGGA--TGGGGAGATTGAACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGAACGTGGCGGTCGAGGTAATGGTGGTCACCAAAATGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGAGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTG-CG--G-T--AAAGGTATATAGGTCTTGTGTGGTAAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTTGGCAATGGATGATTTTGATGTGATTCTGGGCATGACTTGGCTTTCTCTGCAATTTGCAATCTTGGATTGTAATGCTAAAAAGGTGACGTTAGCCAAGCCTGGGATAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTTAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCATCAGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGTGTTAAAGGCACAACTTCAAGAGTTATTGAACAAACGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATG</genome_strand>
        <mrna_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAAATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCATCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTAGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAAGGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGCGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACAGACAGAAGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGAATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAACGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGCATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCTATAGTCTGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGTAGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGTTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTAGAATGTGCATAGACTACAGACAACTGAACAAGGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U592109" ref_strand="-" ref_description="SGN-U592109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=5e-59) Putative; ">
      <seq>ggaaaagggatgagttcttgancctatagcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="-" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="16644" stop="14616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16344" g_stop="16130" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16129" i_stop="15394" i_length="736">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15393" g_stop="14879" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="723" r_length="508" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="-" ref_id="SGN-U592109" ref_strand="-">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16344" e_stop="16130"/>
          <exon e_start="15393" e_stop="14879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAACAACGGATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGGTCGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGTCAGACGACTTCACCACAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTTACTACAGACTGTAGTTGGGGGACCACCTCAAACCGGTCAACACTTCTACGAGGGGCCTATGATTGACTCCAGAGAATGTTATGGATGGGGAGATTGAACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGAACGTGGCGGTCGAGGTAATGGTGGTCACCAAAATGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGAGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGCGGTAAAGGTATATAGGTCTTGTGTGGTAAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTTGGCAATGGATGATTTTGATGTGATTCTGGGCATGACTTGGCTTTCTCTGCAATTTGCAATCTTGGATTGTAATGCTAAAAAGGTGACGTTAGCCAAGCCTGGGATAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTTAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCATCAGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGTGTTAAAGGCACAACTTCAAGAGTTATTGAACAAACGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAG</genome_strand>
        <mrna_strand>GGAAAAGGGATGAGTTCTTGANCCTATAGCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U581303" ref_strand="+" ref_description="SGN-U581303 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-69) Polyprotein,; ">
      <seq>cacgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtctgggacaatttctcctaatatgtccaatctccccacatccataacattctctggagtcaatcataggcccctcggagaagtgttgaccggtctgaggtggtcccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctccctttcgaagcctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaagtccgggggatatacttctccataaacaaactagagaatgaggcccaagtcataggtggtgcctctattggttgacactcgatatgtgaccgccaccacattttggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcctgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcactgccctagtatcagatgggctaggtgctcgtcctcttcctctagaggacgtcctcccacgacctctaccacggccccttgccgctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="15204" stop="17308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15504" g_stop="17009" g_length="1506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1508" r_length="1508" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-U581303" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>1506</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15504" e_stop="17009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCTCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCGCCACGTTCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATCT-CCC-CATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGTAGAAGTGTTGACCGGTTTGAGGTGGTCCCCCAACTACAGTCTGTAGTAAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGACTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCGACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGACGAATCCGTTGTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAACGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGAGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCGAACCATTCTACTATACCCATCTTGTGTACTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTTATCACTTGTCATTACAGGCCCTGTAGGCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAAAAAACACTGGGGGTGTCTGGCCCTGATTAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGAAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTTACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCATCCCCCAGAGGATGTCCTCCCACGACCTCTACCACGGCCCCTTGACGCTGTTCTT</genome_strand>
        <mrna_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U577296" ref_strand="+" ref_description="SGN-U577296 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-54) Polyprotein,; ">
      <seq>aagaacaacggtaagaggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcagtgactcctccaccgactgaggagataataagagaaggggaggatggggaaactgaacaagtgcaaaacgaggaaatgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttgtctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccacatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcagaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtcaaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttggacctcattctctagcttttttatggagaagtatatcccccggactttgagggataggaaaagggatgagttcctgagcctagagcaaggtaggatgtcggttaatgcttatgaagctaagttccgtgcactatccagatatgccacccaactatgtttcagtccacaagagcggattcgccgttttgtgaaggggttgaggtcagagttgtggatttcagccttatagatagcggctactgcaaaatccttccaagaggtggtatatttcgtggtagaggtggaaggagtgaagccagatgacttcaccacgacatcgacatcaaagaggtttcgtaagggaggtgagtttaagggttcttactctagaggacaaggttccggaggttactcagttcgaccatttcaatcttcactacagaccgtagttgggggtccacctcagaccggtcaacacttctccgagagacctatgcttgactccagagagtgttatgggtgtggggagactgggcatattaagagaaattgtccaaaacagagttatagacccccaatggctagaggtagaggtggtcatggtagaggccgtcattctggaggccgtggtggtcgacccacgggtggtcaccaagacggccgaggtgatgggcaaactggagccactacatcacaacatggtaggggcaacagacagacgaacgatatggcccattgttacgctttccctgggcggtttgaagcggaggcatctgatgctgtcatcacaggtaatcttctggtttgtgattgcacggcttctgtattttttgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="-" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="17309" stop="15286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17009" g_stop="15586" g_length="1424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1426" r_length="1426" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="-" ref_id="SGN-U577296" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>1424</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17009" e_stop="15586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGCGTCAAGGGGCCGTGGTAGAGGTCGTGGGAGGACATCCTCTGGGGGATGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTAACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTTCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTAATCAGGGCCAGACACCCCCAGTGTTTTTTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAAGCACATTTCCTCGTCTGCCTACAGGGCCTGTAATGACAAGTGATAAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTAGTACACAAGATGGGTATAGTAGAATGGTTCGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACTCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCGTTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAACAACGGATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGGTCGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGTCAGACGACTTCACCACAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTTACTACAGACTGTAGTTGGGGGACCACCTCAAACCGGTCAACACTTCTACGAGGGGCCTATGATTGACTCCAGAGAATGTTAT-GG-ATGGGGAGATTGAACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGAACGTGGCGGTCGAGGTAATGGTGGTCACCAAAATGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGAGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCT</genome_strand>
        <mrna_strand>AAGAACAACGGTAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGATAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAACGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCACATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCAGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGACCTCATTCTCTAGCTTTTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAAGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTATAGATAGCGGCTACTGCAAAATCCTTCCAAGAGGTGGTATATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAGAGGTTTCGTAAGGGAGGTGAGTTTAAGGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCATTTCAATCTTCACTACAGACCGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAAGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGCCGTGGTGGTCGACCCACGGGTGGTCACCAAGACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTTTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCACGGCTTCTGTATTTTTTGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U580377" ref_strand="-" ref_description="SGN-U580377 Tomato 200607#2 [7 ESTs aligned] ">
      <seq>ccacagccccagtggctggctcagttgtttcttgtctggccggtgttggtgttgacgtggtcgttgctctagttctaaccatctgcgaaagagagtgaagatggtcagataccaattcgtatcgcctagataccaattggactcaagtagtagcacgaaagaaagaatgaaagagtgaagttttcctaaagtcttatagcctctcaaggaaaagtaaaggcgtccccctaccgttccttaagactctactagacttgttcttgtgtgatgagaccaacgaacctaatgctctgataccaagttttgtcacgacccaaatccgggccgccactggcacccacacttaccctcctatgtgagcgaaccaaccaatctaaaccttaacatttcaatgtaatagcaacagaaagtaatgcggaagacttaaactcattaataaaatcaataactactattattaaacatctattattcccaaaacctggaagtcatcatcacaagaacatctactttaaactactaattctaagagtttctaagaagctaaaaaattacataagaagctagtccatgccggaagttcaaggcatcaagacatgaaggagaagatccagtccaagctagaagcgttagctcaccctgaagatccggtgtgacgaagactggcttgagttactgttgagtcgaagatgacggcacgtttgctgcactccacaaataacaagaagaaaaacataaaagtaggggtcagtacaaaacacggctactgagtagatatcatcggccaactcaaaatagggaacagtatgtattaagcaatatcataaaatcaactaatatccttaacatgcagcatttatagttaccataacccttggttacaacaccaagcacatcaatgaggactcacacctcctcatcatactcatttgggaatttagttcattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="16717" stop="37517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17017" g_stop="17817" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="804" r_length="804" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17818" i_stop="37072" i_length="19255">
            <donor d_prob="0.787" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37073" g_stop="37217" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="949" r_length="145" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-U580377" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>946</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580377" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17017" e_stop="17817"/>
          <exon e_start="37073" e_stop="37217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGCCCCAGTGGCTGGCTCAGTTGTTTCTTGTCTGGCCGGTGTTGGTGTTGACGTAGTCGTTGCTCTAGTTCTAACCATCTGCGAAAGAGAGTGAAGATGGTCAGATACCAATTCGTATCACCTAGATACCAATTGGACTCAAGTAGTAGCACGAAAGAAAGTATGAAAGAGTGAAATTTTTTCCTAAAGTCTTATAGCCTCTCAAGGAAAAGTAAAGGCGTCCCCCTACCGTTCCCTAAGACTCTACTAGACCTATTCTTGTGTGATGAGACCAATGAACCTAATGCTCTGATACCAAG-TTTGTCACGACCCAAA-CCGGGTTGCGATTGGCACCCACACTTACCCTCCTATGTGAGCGAACAAACCAATCTAAACCTTAACATTTAAATATAATATAAACAGAAAGTAATGCGGAAGACTTAAACTCA-TAA-ATAATCAACTTCTATAACTCAAAAACTTATCACTATCCCCAGAATCTGGAAGTCATCATCACAAGAACATCTACCTTTAAATTACTAA-ACTAAGAGTATCTAAAAAGCT-AAAAA-TACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGGAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAGATCCGGTGTGGTGAAGACTGGCTTGAGTTACTGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATAACAAGAAGAAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGACCAACTCAAAATAGGGAACAGTATATATCAATATTATCGTAAATCAACTATAAAACTCAACATGTAGCAACAACAAGTATTATAATCATCAATAAGTACCATCAAGTTCATCCATGAGGGCTCAAGCCTCAACACCATACTCATTTGGGAATTAAGTATATTAAGTTGAGTATATTATCATCTTTCAAGATTCATTATCTTTCCTCCTCTTGTGTCGGTGCGTGACACTCCGATCCCCTACTACTATGTGTCGGTACGTGACACTCCGATCCCCTAATTCTATGTGTCGGAACGTGACACTCCGATCCCCTACATGTGTCGGAACGTGACACTCCGATCCCCTACATGTGTCGGAACGTGACACTCCGATCCCCTAATTCTATGTGTCGAAACGTGACACTCCGATCCACTAATACTATGTGTCGGAACGTGACACTCCGATCCACTAATACTATGTGTCGGAATGTGACACTCTGATCCACTAATACTATGTCTCGGAACGTGACACTCCGATCCACTAATACTATGTGTCGGAACGTGACACTCTGATCCACTAATATCATGTGTCCGAACGTGACACTCCGATCCACTAATATCATTCTGTAAATCATCAAGCCTTCTCTATTACAAGGCATCATCAATCCCATTACTTTAATTCATCAAGCAATCTTCTATACCAAGGCATCATCATTAATAATGTATATTAAAGTTTCTTTTCAAGATTTGGGATTCATTATTTTCATCAGGCTTATCTTATCACAATCACATAATCATATTCATGCAACATACCATTAAGCATATAGTAGGGTTTACAATACTACCAATACATATCATTCACTATTAAGAGTTTACTTATGAAGCATGAAAACCATAATCTACCTCCACCGAAGAATTGAAATCAACAAGCAATTTCCCAAGCTTTGATATTCCCTCTGCCTCTTGATCGATCAATTTCTCTCTCTCCTTGTTCTCTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAGTTAACATATAATTAAGTGTAAAATATGGCAATAATTCTCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCCAAGAATTTGAGTTATTAATATAAACCCACAAAATCTATAATTAAGGAAGGAATAGTCAAAAAACGTCCCTTAAAACGTGTAAGGAAATCCGATTCTGCCTGGGATTTGTGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGAGTCAGAGAGTCAATTTCCACTGAACAATCTATGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGTCATTCCGTCATGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATGACGGATCGTCGTTTGGTCCGTCGCCTCAGCCATTTTTTCCAGAATTGAAGTTTGTTGCTCATAACGACCAACAGGTCGTTACAATCAAGTAACCCATAACTTAGTAAAAAAACTAGGGTTCATCCAATTCATGGGTTCATAGGTTATTTTAGTTAAAATCATTAATACAATAACAATTTAATCCGTAAGTAACGTTTAAAACAATGGATGTAACAACTCATGGAAGAATTATTAAATTGGACAATTCAACTTCAAAAACATTTGAAAACTACTTGAGAGTTAGGATCCTTGATGAAGAGGGTTTCAAGGATTAAAATACATATCGTGATGAAGCTATTTCTTTACTCTGATGAAGAATATTCCACTCAATTCAACAATTCAATCTCTTCCTTGACTTTGGACTTCAATAGAGTCTTATGCAATTTCTAAAGGATTTGGGGTTTTAATATGAAATGAAGGAAATCTTCTAAGTGTTAAACAATTATATACAAACTTAAAATACCCAAAATACCCATAATTAACCACCATACTAATATTGTAAGTAGGTTGAAATCACATGTTTACCCCTCAACTAACAGTGAACCTGCACGCAGGACAGTGCCCATCCACAGTTGGGTAGTCGACAGATCGTTTGTCCACAAATGGACCGTCCTGTACTTCTGCTGATTGGTTCAAAGACTCAACATTAGTATATCCTCTACAAGGATAATTCCAAAATGATGAGACCCTACCAACGGGGCATCGATTGACCCACTGTGTGTCGACTGCCTACTTGGTTTGGGTTGTCTTGGGCTGACTTGACACCAACTTTGGGTCCATCCTCAATGACCCTTGGATGCCCCTTGGTGATGGTTGCCCGGATGTTTCCAAACCAAACATAACCGTATTTGATTTTTGTAACTGTCACATAACTTTCACTCAAAATGAAAATGTAAAAATCGACAAAATATGCCTAGACACACAAGGCCATTTCAAGGCATATCTTTAAAACGTCGTGGACGTTCTTGGAAGTTTGACGTCCACACTCCACAAAACTCGACACACTGTATATATTTACATCATAATAACTCAACTAAGGACCTTATAACCTCATGAATCATGCATAACACATAGAACCACATATGAGGAACATAGGTGACTTAGTCGTCAAACATCTTCATCGTCCTTCGACGTTTGACTTCCGATGCACCTAAAATCATAGACACTGCTTCAATACCATATTTTAGACCTATTTAGGACCTTAGAGAATCAATATAAACATGTTAGACACTATTTAACCTAAGTTATTTTTGGGGTCTTGCAATCTCCCAACTTGGAACACATTCTTCCTCGAATGACACTTGCCACTCTCCGAACACTTCCATGAATAAAAATTTAACTAGCAGCTCATGAACATACCATATAACACATAATTAAAAAGAAAACATCTATTTCATATAGTTAAGAGGTTAACAACACAACAAGAAACTAGAAAACATTCTATAACTCATCATGCTACATAACCCACATGATTCATTCCAAATGATGAAAACTAATTTTATATTCAATATTATACTCATATATATCAGTGATAACCATATTAAAAAAATTTCAGACCAAAGAATCAATTATTCAAATTTTAAATAATGTAACAATGAACATCAAGTTCTTCACAGTGAATTTGGAAAAATTTTGAAAATGCAACTTTAGGGAATTAAAGATAGAAACAAGCTAATATGCAAAGTAAAGTCATATAAACACATCTTACCACATAATAATGGCTTCAAAAAATACACAATGCAAGAAGTTAATGAAATTCAATTTCAACAAAACTCCTAAGCACCATGCAGATGCAACATGCTTTAATATTATTTTATCCCATCTTCTAACCATAATCCCTCACTAAGAAGGAACTCATATCACTAAGAACATCAAAGCATGGACTCACTCTCATCATCATCACCATTACCCGGATTCTCTCCTCTATTCCAGGGTGCATAGAAAGACCTCTTTCTTGGGGCATCATCTATTCGAACACTAGGAGCAACTTGCATACACTATTTTCCTCTAGAAGAAATGTTAGGACAATCTATCACATTATGTTCTTCCTTGCCACAACCATTGAAACTATATGTACCCTATAGACACTCATCATAATGTTTTCTGCCAAAAATGATAAATGTAGGTTTGGCATTTTAAGAACCAGCTCCTTTCTTTAATTTCACCATAGCACTCTTAGTTTCTTATTAAGTTTGAGCCCTCTTTTTGAACCTACGTTTCCCCTGATCACTGAACAACTCCTTTTCAAGTTTCTATCCATCCTCCTAAGTTTTGACTCTTTGATTGATTGTGCAAACGCCATGAGTCTAGCTAGGGTCATATCATCATGTAGCATAGCCGTACGATATTCCTCCCTTTCTAGATCGACTACCCCTGCCAAAAAATGGCTAATTTCATCCCTCGAATCAGACACAAGGGAAGGGGCATATCTATATAACATTGAGAACTTCAAAGAGTATTCCTCAACACTCATATTACGTTACTTGAGATTGATAAACTCATGTACATTAACTTCCCTCCTCTCACGGGGAAAATACTTACCAAGAAAAGCTTCCTTAAATTCTTCCCACTCAATAGGACCCGACTCCTCCAGTGTATTATCCTTCCTTTGAGTGTATTGTATTTGAGAAACATCCCTCAATTTATATGAAGCCAACTCCACCTTCTCCTAGATTTAACCCCCATAGCACTTAACACCTTGTACACTCCATCTAGAAACTCTTGGGGATCCTCTCCCACCTTAAAACCAAGAAAGATAAGAGGATTCATCCTCACAAAGTCTCTCAATCTAGATGTCATAGTTCTCTCTACAAGATTCCCCCTAGGCCCCATACTCAAATTCACTTGAGTAGTCACGCCTCGGGCTAAAGCAAACAAAGCCTCTCTACTATCCATATTACTCAACTTCGGGATATCATCACCTTCACCCACAATAGGGACTTGGTCACCTTGAGGAACTTTCTCAACTTCCTCAACTTGAGGAAGAATCTGCTCTTGCACCTCATTATCCTTAACTCTTCTAGCCGGTGTCCTCCTTGTATTCATCTTCCTAAAGACCCAAAGAGAATCATAATAAAAGAGTACTCATAACTTTTTCTCTACCACACGACACAGGAGTAGAATACAATGAAAACTCTATCGTCCTATAGCCTCTCGCCCATAGATGTGTCGCGACTCACACCGATCGTCAAGACTCTACTAGACATGACTTGATGAGACTTTTTGATTCCTAGTACTACATTCATAACCTATGCTCTGATATAAAGCTTATCACATCCCGAGATGGCACCCTAGAATTTAGGAGAAATCTCAGATTGCAACCAGCATACTTGACATCTCGGAGGTATGTACAGGCGCTTATATATCATTCGTCGCATAATATTAATGAAAAGTAGTGTGATATCAAAACTTTTCACAAAAAATATCATATTATTTAAAAACTCTTTCATATAAACTCATAGGAAACACTAAGTGTCAATCTCATCAAACTTAAGACACGAGAATACTTGGGACACAGCCCGTACTTTAAAAAATAGAAATACTTATCCTATTACAATACTTCTGTAGGAAACATAAAAGACATCTACGCCCTCAAATCAAAGGAGGACATATTTGGACTTTTGCGGTTAAAGTCCTCCTTCTGAAATGCTCCTCACCTAGCAACAACTACAGAGATAGATGAAATACAACCACATGTCCTAAGCATGGCATATTGCATGAAAATCATGAAAATGGACATTTAGTCGAAATATGCATCTTTTCATTTAAAAATCATATTACAATAATAAGAACAACATTTGTAACCTTATAAACACATAAGATAATATTTAGCCAAAATATCATAATTTTTGAAATAACTTTACACTAACCTCAACTCACTATTACAGTGAATTCCTTCATTGTACAGTAAAGTTGCTTATTTTACCTTAAACATCTTCTAGCATGTAATCATTCCACTTAAAGGTATCCTATGTCTCACTTAAGTAACACATAATAAATATCACCCATACGCAATCTCTAGGAATTCCTTGATCCTGAAGACTACTTATAATGAGTCACATACACACATACAAGACATCAAAGCATCAACACATAGATAATATAACATTCTTTTTCCAATGGCTATCAAAAGACCTACTTAAGTCAATCAAGAAGAAAACGTCCACGATTGACCTCTTCAATATTACATAATTAATCCTTAATACTACCTAAGGCTTAGATCATGTCCATGTATTGAACCAATTTCCCTAACTAGATTCATTCTTAAGACTCATTTAGGTAAAAGACGAAATGACCATTCCCATGCCGCCTTCACACCTTAAATATACAACCCTTAACTAATCTAGATAAGTTCTTATTCATTTAGCATACTTTATTAACTTAAGTCATTACATTCACTAGTTCATTTAGGAGGCATTCAACACATAAAGGGCATTCAAGTAATGGTCTTGTACAAGACATAGGAACTCCAAGTAACAACTTCAAAGAATATTGTGCAATGTCTAGATAGCATGCCATACCACCACCAAAACTTAATAGAAATTCTCTAACGCTAGTTGGTATTCCTGATGATGAGAATAGTCAATAACCGACATAAACTATGATAGCAAGACATGGAATCCGAAGTTCTAACCTACTCTGATGAGGTTGTTCTACTTCAAATGGTAGAACTTAGACACATCCCAAGTAGGCACATGCTTAAGGAATTGGAGGGCATGCTTTGTATTGTAGTCTCATTCTTTGACTTAAACTACTTCCCGTACAATACTCACTCGGTGCTAGCCTTCTTTCTCCTAGAGTAATTCCCACTTAACGTTCACAAAATGGTTCCATATTATGGCGACAAGAAGCTCAAAATGACTTTACTAAGGATTAATATTATGTCTCTTCAGCCAATTAATTTTAAGTCCATCATTCCTTTAATTTGAATGATACCATTACTACTTAAGACTTAAACATTAATAACCTTAACACTACGTTCAATATTTCACATTAAAAAACCCTCTTAACTTCATTTAAGGTCACATGTTATTCATACATTCAAAACCTAGAGACTTTAGCATCCTAAGTTAACTCATAACACATGTCATTCTAGAAGCACATAGAAATAACCCATATCATCTTCAAGTTAAAATATACACTATCATATAATAATCATTGTGACCCACATAGACTCATATAATAAATTAGGAATAACAAAGTATAACCCCTAAGACGATACACACAAGGTCAAAGTCATAGTCTAACATGATCATCTAAGTTTACATGAATAGAAAAGTGTGTATATAAATTCACATATAGATATATGTTGTCATACTTCACATAGTCAACTATACAAATAGCCACATTACTTCAAGTAGTAGTCTATAAAGCCATGATCATGACATTACTTAAAATAATGCCGACAAGGCCACATCAATTGCAAGTAAATCACATAACACCGCCACCATAAGTGGACCACGCTAATAACAACATAATTGAAATATAAATTATTCATAAAACAAAGGAAATAGGGCATCTTACCACCACATAATCCTCAACAACTCAATCCAATGCCAAATCACCACATTCGATATCTCTAGGCCCTCACCCATGGCCATAACCCACAATTCATTATAAGTGTAACAATATTCATGAAACTAGGTAAAATTACTATATATTTCATCAATCCAATACAACCTAGATATCAATTTACTACAACTATTATATCAATAGACATCCCATAGAATTCTACACCATAATTCATCAACATTAGACCAATATTAAGTAACTCATACCTTAGTCAACAATCTAGGGTTCATCCAATTCATGGGTTCATAGGTTATTTTATTTAAAATCATTAATACAATAAGAATTTAATGCATAAATAACATTTAAAACAATTGATGTAAGAACCCATGGTAGAATCATGAATTGGAAATTTAACTTTGAAAACATTAGATAATTTCTTGAGAGTTGGGATCCTTGATTAAAAGGGTTTCAAAGATCAAAATACATAGGTTTATGAATCTATTTATTAAATTTTATGAAGAATATCCACTCAATTAAACAATCCAAACTCTTTCTTGACTTTGCACTTCAATGGAGTCTTAAGGAATTTCTAAGGGATTTTGGGGTTTTGATTAGGAAGAATGAAATCTTATAAGTTGTAAGAACTTATATACACCAAAAGACCCCTTATTAACCTTCAATACTCTTATTTGTAAGTGGGGTGAAATTACAAGTTCACCCGTCAACTTACACTGAACATGCACGCAGAACATCGACGGTTGGGTAATCGACGGACTGTTTGTCCACAAAAAGACCATCCTGTCCTTCCGTTGATTGGTTCAGAGACTCAAAATTGGTCTATAATATCCAAGTATAAGTCCCAAATGATTATACCCTACCAACGGGGAATTGATTTACCCACTGGGTTTGGACTGCCTCCGTGGTTTGGCCTTTCTTGGGTAGGCTTGACACCAACTTTGGGTCCTTCCTCAAGGACACTGGGATTGTCCTTGGGGATGTTTGCCCAAAAATTTTCAACCCTCACATGACCGTATACGATTTTAGGACCTCTCACATAAATTTCACCCAAAACAAACACGTAAAACACGATAAAATATGCCTTGACACACAATGTCATTTTAAGGCACATCTTTCGAATGTCATGGACGTTCTTGGACTTTAGACCTCAAAACTAAACAAAATGTATATATACATCATAATAACTCACTTAAGAACCTTATAACCTCATTAATCACACATAAACACATAAAAGCACATATTAGGCACAGAGGTGACTTAGTCATGGAACGTCTTGATCGTCCCTTGACGTTTGACTTCCAATGCACCTAAACTCTTAGACACTGTCTCAATACCATATTTTTGAAATAGTTAGTACCTTAGACCATCAATACAAAAAAATTTGTCTCTAGTTCACCTAAGTCATTTTTAGAGTCTTACAACATCAAGGTGTGACCCCCAAGTATTTGAAGAGGACCTTAAAAGGGTATGTGGGCAGTGACCCACAAAGGGCTCTCACGCCCCGTAGTCCCCTAAGGACTGGTTGTTGAGGGGACATAGGTGATGACACCATGAAATCAAGTCCCAGAAACCCAACCTACATTGACCAACATAGGAATTCGGTCCAACCACAGTGCGTTAGTTGTGGGCTTGAGGTAGGCCTGTAATTGCATTTTGGTAGTTGAGTTTAGGGGCACTATAGGGTTTCCCGATTTAATTAATATTATGTGTTGTCGTTTTAGCCATATTTTAAACATCTATATAACGATTTTATTTTACTAACTTAAGATATCCAAGACATTATTTCTAAAAAAACCAAAAGAACTCATACTGTCCAAAAATTCTCTCTCTAAAATTACTTTAAGGAAGAAGAATAAGAAAGTTGAATCTAGGATGTGAAGGAGAAAGGTTTCTAATAAAAAATTTTGGAGAGTCATATCTAAGCTATGGTATTCCTTCTTCATCCATGGAGAATATTCATCCATGGAGCCCCTTCACACTCAACTTCAAAACTTGTGATTTCCCTAAAAGTTAGATTTTTACTCCAAGTCATGGATTCCTTTAAAAAGTGATTCTAATGATTTATTTACTTATTATGAATGAATTTTTGATTTATTTTGGTTTCTATGTTGAAACCACAAGAATCTATGAAATCCCCATATTCGCAATTTACGACTTGGTGATGTGGGCCCATTGATGAAAAAACAACATTGGAGTATTTTAGTTATTTAAATCATGTTACTATCCATCCTTGTGGTGAGTTCTAAATATTTGACAATGGAAGTTTCACTTTGAGCTTTATTTCTAGTATTTCATTTTCAGATTATGGCTTATGGGTTGTATCCTTTTTCATTTAAAGTATTGTAATAGATGACTATAATGAGATAAGTCTAGACATGATCTTCACTTTATAAACTTTATTACTTGAAATTCATTTTTTTCTCATTATTTCTCTATGCTTATATAATTATATGCTAGGTTAATTACATCGTGTCTTTTGGGGTTCTATGTTCCTTCTTAAATCAATGTTCATTCCATTGGGTCGTGAAAGACTTTATAATCCGAGAAAAAGGTTTATAATGATTATAGGATGTTATCTCATTTGAAAAGTCTAGTAAAGTCTTTTCCGTATGTGTAAGCACTCCACATTTATGAATGAAAGGCTACAAGATGAATATTAATTCCACTTCTTTCACTATTCTTAAGTCGTACAATATAGATTGTCTCTATAATGTCTTTCTTCTGATCCCTGTTTGATGGTCTCTATGATATGACTTCTCGAATACAATTCGCAAGACGGGTTGAAGAAGACAATGTGAATGTATGAGATACTCCTAATGGTCCTCAAGCTCTGATTAATTCTTTGGCCATGTTGGATATGGAGATTAGGTCGTCTTTCTAAATGATGGCCTTAGCCATGACAACTCAAGATAAAGTTGTGACAATTCAACCAAGCAATGATGTCCCAATGCAATAGAGAGTATGTATCTCAATTAAACCCTAATATTAATTCTGTTGCTACAAGAGTGAGTGACCTTTCTTGAAAAAACCCCTCTACATGAGTTTCATGGATATCCTAAGTGGAAGAGTATAACACCTCTAAAATTACATAGGTGTAACTAGATCTGAATGCTTGGGTCATGATGTTTTAAAGTAATAAAATGGGTTATAATGAGCTTAAGAGGCAGTGGTTAAAGTTTCATGACGTTTGGAGGTCAAACGTCCATGAAGTTCAAAAGGTTTGTCTTGAAACGACCTTATGTGCCTAAGTGTGTTTCATAGAGTTTTATGTGTTTGTTTTTGATAAAATTGATGTGAGAGGTCCTAAACTTGTATACGAACATTTTTGTTTTGGAAACGTCTAGGAAAAAGTCCCCAAGGACAAACCAAGGGTCCTTGAGGAAGGACCCATCTTTTGGGCCAACGTTGTCCAGACCAGCGTCACCTACCGAGGGCATCGACGCCCAATAGGTGGACTGATGCCTCTAGGTGGGTGGCTAGGTCAAGACTTAGCCTAGGTATCTTAATTTCCCAAAGATCAGTATCTGATCCCATCAGCAAGTATCCACGTGGAACCTTCAGCCTAGTTGGAAGGTTATGATATCCTTCAAGTTGAAAGCCGTAACGGTACCTTCTTGTGTAAATAGTAAACTTAGGGTTGATTGGCTGGAACAACATGAAATCATTCTCAGGAAAGTCATTAAGATATCCTCTTGACAGTTGTAGGTAGCCTTAGTGGACCCTCTTTGGTAAGGTGTAATGTGATTGGGTTGTGAATTAGATATGGAACCTCTTCATGTACTCTAATACTCTATGAGAACAAAGGCTAGCACCGAATGACTATTGTTTGGGAAGTAGCTCTATTTAAGGATTGTCACGACCCGCAAGTACCCCCTAGAATTTTAGGGACAACCATTGGATCTTCACATGGCATATTGACACTTTCGGGTCTTGAACAGTCCTTTTAACTATTGTTTATTATATAAGTAATGAAAATTAGTGCAGAATTAAAACTTTTCATGAATAATGGTTTTTTATCAATCGTATACGATTATTGTTCAAATTCTTGATAATCAATATTCGGAAGAAAGATAGTATGAATCCTAATTAGTCTAACTCTATTTTCCCAATTTTCTAGCAAAGTATTGTTTATGATTGAAGATGAAACCCCCTTTTTTATTGTTCCTCGATATAGTCCATTTAACAAAGGATCATACATTTTAGGCATGTATTCTTTTTTAGTATCATCATTACAAAATCTAGTCCTTGTTTCGAGTACATCCAGAGAAAGAGATTCATTGTCTAGAATTTTAAGTTGATTTAAAAATTCCTTATTTAGATTATTACTTTTTTCTTTGGTGGTAGAAACCCACTGAGTGACCAGTTCATTAGGGAGCCTTTTTTGGAGTGACAATAGAGGTATCTTTCTTTTTATCATTTTCCAAAAAGTTGATAAACATGGAGGGTATGTAAAAGATATTATATATATATATATATATATATATATATATAAATGTGTGTGTGTGTGTGTATATATATACATATACATAAATATATATATATATATATACACACACATTTATATATATATATACTGTAACGACCTGTTTAGTCGTTTTGAGCAACAGACTTCAATTCTGGAAAAAACTGGCAGAAGCGACGGACCCCACGACGGACCGTCAAGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATATGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCATGACGGAATGGCACGACGGACCGTCACAGGCGTGACGGACCGTCACGGAGACTTTAGTGAAAATCTATTCTCTGAACTTTGCGACGACCTGCAGAACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCACAAATCCAAGGCAAAATCGGATTTCCTTACACGTTTTAGGGACGTTTTTGGACTATTCCTTCCTTAATTATAGATTTTGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAATAGAAAGAACAAGAAGGGAGAGAGAGAAACGATCGAGAAGAAGAGGAAAACACCAAGCTTTGAGGATTAACTTGCTTGATTTCAATTCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTCATAAGTAAACTCTTAATAGTGAATGATATCTATTGGTAGTATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGAATAGAGAAGGCTTGATGATTTACAGAATGATATTAGTGGATCAGAGTGTCACGTTCCGACACATAGTATTAGTGGATCGGAGTGTCACGTTCCGACACATAGAATTAGGGGATCGGAGTGTCACGTTCCGACACATGTAGGGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCGGAGTGTCATGTTCCGACACATGTAGGGGATCAGAGTGTCACGTTCCGACACATAGAATTAGGGGATCGGAGTGTCACGTTCCGACACATAGAATTAGGGGATCGGAGTGTCACATACCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAGGAAAGATAATGAATCTTGAAAGATGATAATATACTTAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAATTTGATGGTACTTATTGATGATTATAATGCTTGTTGTTGCTCCATGTTGAGTTTTATAGTTGATTTATGATATTACTTGATGTATACTGTTCTCTATTTTGAGTTGACCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTGTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTTGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATTTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTATGATGATGACTTCCAGATTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAATTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAACTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACATACACACACACACACACACACATATATATACGCACACACATACACACACACACACACACACACACATATATATATATATATTTACACATACACACACACACACATCTTAATCTAAAATTGCTGATGTGGCATGCCTCTAAGTTCTAAGAAAATATTTAGTTTTTTTGTTTTTTTTACTTTTTTTGAATTTTAAAATACAAAATATTACTTAAATATAGAAGATAATCACAATTAAAGTCATTATATAATAATTACTCTTATGTCTGTTATCTTTCTTTTTATATTCGTATGTTACTGATTATTTTACTAACTATAAATATCAAAGCAAATGTCTTGCACTATACAACATTTTATTTTTTTTCATTCAGAATTTCCTTTCAATTTTTTTTTCTTTTTATTTTATTTTATTTTGCTTCTTTTCTCTGCAAACTCTTTTCCAAGAAATTTCTTTCTTTTTTATTATTTTCTATTGATTTTTATTGTAACATTATTAGAGTTGTCTCAACAATTATTATTTTTGTACTTAATTTCATGCCTAATTTTTATTTGTTAGAATATGGGAGAGAGCAACATGTATATGACCTTTTTTGTGAAAGGAACTGGTCATGATCAAGCTTGAAAAATATCAATCATTCGCGATATAACAAACTTTATCTACATATATTTTTCTGTTGGAGGGTTGTATATAGTAATAGTGTGAATTCAAATATAACAAATTTTATTATTCTAGGATAAATGTCATGTTTTACAGTTATGAAATAAAATATTAATTTTCCATCAAATTATTATTATTATTATTTCTATTATTATTATTATTATTAATAATAATACTAATAATAATAATAATAATAATAATATTAACACATAAAACCTCTCCTTATACTATTCCTTAATAAGTAACATATTCATAAGAACTTACAGTAACAATCAATACGGAAAATACAACAAGATGAAGAAAAGAAGAACAAACAAAAAGTATGTATGTTATAAAAGTTTGACACATCATTCACCATTTATATACTATTATTTATATACTTTTAGTATACTAAGATAATGAACTCGATTGACACATCATTTTGTCATTTGAGAAGATTTTTTAACAAGTGATAAAAGTTTGAGAAATTTTTATCATTCATTAAGTATATATATTTTCGACTTATTTAAAATATCTATAATTGTTTGTCCAGTCCACCAAGTCAAATTCCAATATTATTGTAAATCACATTTTATATGAAATCTAAAATATTAAAAATTTATTGAACATAACTTTGTTTGTTGAATGAAAATCAAATCAGTAGGATCTTTTTAAAAAAAAATGTAGTTTAGAACATTCAAAGTGTTTTTTTTAAAATACAATTATAAATTGACTTTTCAATTAGTTACAAATTTGTAAAATGTAATTCACAAAGCCAGCATTGTAATTGTCTATTTTTCTCCTTTTTTGGATTATTTCTCATTTTTTCCTTAAAATATAAGTACATAAATGATAATTGAATAATAGATGAAATTGTCATTTAAAATAAATTAAAATTGACAATTATTGCCTTTTTTATCCATCTTATGTAATATTTTAGACTATTCATTTACCTTATTAATTTTTGCACATTAATGTCACTTTCTCTTCTCATGTCTTTTGATATTCCAAGTATGGAAAAGTATCCATATAAATTTGATTACAATTAGATATACATATTCCATAACAATCCATTTTTCATTAATTTTTTCAAAAAAAATTGAGTTAATATTAATGGTATAATCTCTTCTAATATTTTTCTATTGTTGAAGATTTATCCTACAAAAGTTTTGTCACTCTCACATATAATTGTTATGATAAACAAATATATATACATTATGTATTTCTTATTTAAAGCTTATATGACATTTGGATATACATTTCTCATAAACTTGAGTGAATATTAATGTTATAATTTCTTCTAATATTAACATATTTGTCATTTAATTAGTTGATGGTTTAAATGTGGCAAAAAAATCTCCATATTTATTTTGATGGTGTAAATTTCATTTGGTAGGAAAATAAAGTTTACTCAATTGAGAAGAGAAATATGTCTCGAAAAGAAATATGAGAGTTTTTTTGGTATACTAAAAGTTGGGAGATGGAATCTAAAGCAATCTAAGGTGATTGGTTAAATCCTTGTAATAGTAATATAAATTTCATTGAACTTTCATTTCTTTCAATTGAACTTTTCTCATATTTTTTGAAGGTAGTATATTTTAGTGGCAATACACTTTGAAAGTTATGTTTTCTGACGATATTTTTAATTGTCATTCTTATCAGTAATATGTTTTCATCACGTGAAGAAAATAGAGTTCTTCACATTTTGACATGTTAGTGGTAATTCCTAGTTTTTATTTAATATAATAATAAATAATCACATTTGAGACACATGAGAAATATTATTACCTTCCAATTATTTTTTTTTGTAAACTATATTCATATATAATTAATGTTTGGTGTATACAAGATAATATAACAATCTCAATATGATCAACATTCATATTTGAAAGAATATATTTATTGTTGTAAAACAAAACAAAAAATTATATAAATGACGAATCATGCAAAAAAAAAAATTAATCGCATCAATTAAATTGAATTTTTTTTATTTGTTTGTATAAATAAAATAATTAGAAAATATTTATAGGAATTTGGTTCTTTTATATCAACAGAAATTAAAAGCTCAAACATACCTAAAATCGACCACGAATAGCAAGATCATGAGACTGAGCAACCACTATATATGAAGTGTCATTTCTTTCTTTGTACTCTTTTGATTTTAAAAAATAAGGACTATATAAAACATTAAAATGATATAAGAGGTCATTCAAATTATAAATTCATTTCTATTTTTTTAGAAATATAAAATAAATTTAGCATGATAAATGGAGAAGAATGAGGAGAAAACATAACAAATTACAAAATAAAAAGAAAACAGATATTCAACCAAATGGAAAAAAAATAAAAAAGCAGGAAGAAAAAAAAGTAATTGAAAAGGAAAATCTAATAATTATAAGTAAATAATAATTTAATAAAACATAAAAAAGGAAATAAAATAAATTTTTATTCTTAAATCACGTTATTTTTATTTTATTTTTCTCTTTACTTATTTCTCTTAGTCTTTTTCAATTGAGAGTAGGAAATTAAAGAATTAAAATGAATAATTCAAATTACAAAAGCTATGCACATCCTTACTTGTATATAAGAAAAAATGTAATGAATTTATTAAACTAGATTTGAAAATACAATCTTATAATATAAAGGAGAAATACTAAGGGCCGGTTTGGATTGACTTTTGGCTTATGACTTATAATGCAAAAATCATAAGCTCTAACTTATAACTTTTGACTTATTTTTGTTATTTTGATTTTAAAGAAGTGCTTATAAACATTTTTACGGTTATTCATACACTTCAAAACTGCTCAAAAACTATTTTGACTTAAAAATACCTAAAAAAAAAAAAGTCAATCCAAAAGAAGCCTAAAACTACATAACGAAAAAGTTTACAATAAAATAATTTTTTATAAATTATTTAAACACACTTAAATAAATTATTCTATATTTGATATTTTTTATTGCACCTTTACTCTTTTTCGTTATTTTTTCTACTTCTTTTTCTTTATTTACTATTTATGTTTTGTGTCATAGATAATTCTAATTGCTTAATCATTGCTAAAAAAAAGTCATATACGCTACCAAGAAGTTACGATATGTATTTTTTTCATTTGGTTCTTTTATTTGCACATAAAATTCTAAATATTTACTTGTCCGTTAACTTATGGATATAATACCATAACACTTTCTAACATAATTTTTTGCTTTTTCTTTCTAATTTTTTTATCTTACTTAAAAATTTGCGTAATAATTTATATTTATAGTAAATCAGGCATAATAGTTTTCCATTGTTTTTTTATTAGGTATTTATTACACATTTATTTTCAATCAATATAACATACACTATCTAAAATTAAAATATGAGACTCTATATATAAAGCTGGATGATAAAAAAGTGATGTGACATATTTCAATGGCTAATGATCCTACTTATTTTTTGGGGGATCTTTTGGCATTTCCTCTAAATTTTTTCATTTTTATTTTATAAAATCATAAATTTATTTTACACCTCTTCAATAACATATATCTAAATTTTAATTAATTCAATAATGTCTATAACGCCTAACCTTTTATATTCATAACCTTCAAATTATTTTAAATATAAATTTATAACTCCTTAAAATCATACTTATAAAAATTTATTTTCAATATATGATGGTTATTTTATTTTCATTTTTCTACTCTTCATCTTTTATATATTTGGTTGACAATTTTTTTTGAATTTTTTAATTATTATTATATAAAAAGGAATGGTTCTATTACTACTCCACTTCAGTGTCATGTTTATAGTGTTTATTATGTTGGTAATCTTTTCTAATGTTATAATAATTAAGATAATAAGAATGATGTTGTATTATTTATTTATTTATTTATTTATATAGTTAACTAATGATTTCTATTTATTTTGTAGTTTATATAAAGTGTTGATATGTTATAAATTTATAATTTTATTTGGTTCAAAATAGTAAACTTGCGAATTTATTGAACATAATTATCTCTGCTCTTTCTATTTAGTTCCTCAAAAATGACAAAATAGTTCTTTTTCCCATGAGTATTCAATTAAAAATTATTCTATTACAAGTTTTAAATAACATTGAAATCTACAAAATAATATGTTGAGTTTCTTAAGTTTTTCATCTTTATTATATTTTTTTGCTAAAAAATCTGTTTATTCTTATTTATTTTTTACTTTTACAATTTTTCTATTTTTAATTGTAGAATAATAAATATGTCAATTAACTATTCATTTATATTCGTAAATATAAAACTTAAGGATCATTATTTTCATTACTATCATGATTTTATTATGATAATCTCTAAATAACTAATAGTCATTTTAGTTCTATAAATAAATGCATTGTAAGACTTTGGGCAAATGGTCACATTAGTCTTTTAAATTATTAAGATTTCGATACATAATTTATTCATCCATTAATTTGACTCGAAGAATAAAACTATTGAATGATCATCAACTTGTGGAAATAGATGTCAGACAAGAGTACGAAAGATTGTGTATTAATTTCGTGTATATTTTTTATTTTAATCAATAGGACTGTAAGCGGGGTAAAAATAATGTTGCATTCTTTTTCTATAGTTCTCTTTATTTTTTATTTTATACGGAAAGAAATTATGGTTATAAATTTAATCATATTTTTATGGTTCAAAAAAGTAACTTATGACTTTGTTGGAAGTTATCTAACTATGTCACGACCCAAATCCGGGCCGCGACTGGTACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAAGGTAATATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATAAAATCAATAACTATTATTATTATTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATAATCAAATTACTAAACTAAGAGTATTCTAAGAAACTAAAAATACATAAGAAGCTAGTCCATGCTGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATTTAGTAAGACTGGCTTGAATTACTGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATAAACCAGAAGAAAACAATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATGTATTAAGAAATATCATAAAATCAACTAATAACCTTAGCATGCAGCATTTACAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTCATTTGGGAATTTAGTTCATTAG</genome_strand>
        <mrna_strand>CCACAGCCCCAGTGGCTGGCTCAGTTGTTTCTTGTCTGGCCGGTGTTGGTGTTGACGTGGTCGTTGCTCTAGTTCTAACCATCTGCGAAAGAGAGTGAAGATGGTCAGATACCAATTCGTATCGCCTAGATACCAATTGGACTCAAGTAGTAGCACGAAAGAAAGAATGAAAGAGTG-AA-GTTTTCCTAAAGTCTTATAGCCTCTCAAGGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACTTGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTTGTCACGACCCAAATCCGGGCCGCCACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATAGCAACAGAAAGTAATGCGGAAGACTTAAACTCATTAATAAAATCAATAACTACTATTATTAAACATCT-ATTATTCCCAAAACCTGGAAGTCATCATCACAAGAACATCTA-CTTTAAACTACTAATTCTAAGAGTTTCTAAGAAGCTAAAAAATTACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGGAGAAGATCCAGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAGATCCGGTGTGACGAAGACTGGCTTGAGTTACTGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATAACAAGAAGAAAAACATAAAAGTAGGGGTCAGTACAAAACACGGCTACTGAGTAGATATCATCGGCCAACTCAAAATAGGGAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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............................................................................GTATGTATTAAGCAATATCATAAAATCAACTAATATCCTTAACATGCAGCATTTATAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTCATTTGGGAATTTAGTTCATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U590519" ref_strand="+" ref_description="SGN-U590519 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gcaaaacacttagaaaatctgaaattgggtactgaaaatcgactctctgaacttcgtgacggaatgacaggacggaccatcacaggcgtgacggaccgtcatagattgttcagtggaaattgactctctgacccttgcgacgacctgcaggacggaccgtcacagtcacgacggcccgtcacaggttgcgcaaatcccaggcagaatcggatttccttacacgttttaagggacgtttttggactattctttccttaattatagatttcgtgggtttatattaataactcaaattcttggggttaaaagaggtaaccctaagttaattagtggggtattattgccatcttttattcttaattatatgttaatttggggtaaaagaaagagggttttgaaacgagaccctgcgatggtccgtcgtgcccatgacggtccgtcgtggggtccgtcgcttctgccagtttttccagaaataaagtctgctgctcaaaacgactaaacgggtcgttacattatttgactctatcactttaattttctagttaaccacnatcaccaatttagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="29175" stop="38877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29474" g_stop="29863" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29864" i_stop="38441" i_length="8578">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38442" g_stop="38565" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="515" r_length="124" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-U590519" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29474" e_stop="29863"/>
          <exon e_start="38442" e_stop="38565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACACTTAGAAAATATGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCATGACGGAATGGCACGACGGACCGTCACAGGCGTGACGGACCGTCACGGAGACTTTAGTGAAAATCTATTCTCTGAACTTTGCGACGACCTGCAGAACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCACAAATCCAAGGCAAAATCGGATTTCCTTACACGTTTT-AGGGACGTTTTTGGACTATTCCTTCCTTAATTATAGATTTTGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATACTAA-TTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAATAGAAAGAACAAGAAGGGAGAGAGAGAAACGATCGAGAAGAAGAGGAAAACACCAAGCTTTGAGGATTAACTTGCTTGATTTCAATTCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTCATAAGTAAACTCTTAATAGTGAATGATATCTATTGGTAGTATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGAATAGAGAAGGCTTGATGATTTACAGAATGATATTAGTGGATCAGAGTGTCACGTTCCGACACATAGTATTAGTGGATCGGAGTGTCACGTTCCGACACATAGAATTAGGGGATCGGAGTGTCACGTTCCGACACATGTAGGGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCGGAGTGTCATGTTCCGACACATGTAGGGGATCAGAGTGTCACGTTCCGACACATAGAATTAGGGGATCGGAGTGTCACGTTCCGACACATAGAATTAGGGGATCGGAGTGTCACATACCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAGGAAAGATAATGAATCTTGAAAGATGATAATATACTTAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAATTTGATGGTACTTATTGATGATTATAATGCTTGTTGTTGCTCCATGTTGAGTTTTATAGTTGATTTATGATATTACTTGATGTATACTGTTCTCTATTTTGAGTTGACCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTGTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTTGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATTTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTATGATGATGACTTCCAGATTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAATTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAACTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACATACACACACACACACACACACATATATATACGCACACACATACACACACACACACACACACACACATATATATATATATATTTACACATACACACACACACACATCTTAATCTAAAATTGCTGATGTGGCATGCCTCTAAGTTCTAAGAAAATATTTAGTTTTTTTGTTTTTTTTACTTTTTTTGAATTTTAAAATACAAAATATTACTTAAATATAGAAGATAATCACAATTAAAGTCATTATATAATAATTACTCTTATGTCTGTTATCTTTCTTTTTATATTCGTATGTTACTGATTATTTTACTAACTATAAATATCAAAGCAAATGTCTTGCACTATACAACATTTTATTTTTTTTCATTCAGAATTTCCTTTCAATTTTTTTTTCTTTTTATTTTATTTTATTTTGCTTCTTTTCTCTGCAAACTCTTTTCCAAGAAATTTCTTTCTTTTTTATTATTTTCTATTGATTTTTATTGTAACATTATTAGAGTTGTCTCAACAATTATTATTTTTGTACTTAATTTCATGCCTAATTTTTATTTGTTAGAATATGGGAGAGAGCAACATGTATATGACCTTTTTTGTGAAAGGAACTGGTCATGATCAAGCTTGAAAAATATCAATCATTCGCGATATAACAAACTTTATCTACATATATTTTTCTGTTGGAGGGTTGTATATAGTAATAGTGTGAATTCAAATATAACAAATTTTATTATTCTAGGATAAATGTCATGTTTTACAGTTATGAAATAAAATATTAATTTTCCATCAAATTATTATTATTATTATTTCTATTATTATTATTATTATTAATAATAATACTAATAATAATAATAATAATAATAATATTAACACATAAAACCTCTCCTTATACTATTCCTTAATAAGTAACATATTCATAAGAACTTACAGTAACAATCAATACGGAAAATACAACAAGATGAAGAAAAGAAGAACAAACAAAAAGTATGTATGTTATAAAAGTTTGACACATCATTCACCATTTATATACTATTATTTATATACTTTTAGTATACTAAGATAATGAACTCGATTGACACATCATTTTGTCATTTGAGAAGATTTTTTAACAAGTGATAAAAGTTTGAGAAATTTTTATCATTCATTAAGTATATATATTTTCGACTTATTTAAAATATCTATAATTGTTTGTCCAGTCCACCAAGTCAAATTCCAATATTATTGTAAATCACATTTTATATGAAATCTAAAATATTAAAAATTTATTGAACATAACTTTGTTTGTTGAATGAAAATCAAATCAGTAGGATCTTTTTAAAAAAAAATGTAGTTTAGAACATTCAAAGTGTTTTTTTTAAAATACAATTATAAATTGACTTTTCAATTAGTTACAAATTTGTAAAATGTAATTCACAAAGCCAGCATTGTAATTGTCTATTTTTCTCCTTTTTTGGATTATTTCTCATTTTTTCCTTAAAATATAAGTACATAAATGATAATTGAATAATAGATGAAATTGTCATTTAAAATAAATTAAAATTGACAATTATTGCCTTTTTTATCCATCTTATGTAATATTTTAGACTATTCATTTACCTTATTAATTTTTGCACATTAATGTCACTTTCTCTTCTCATGTCTTTTGATATTCCAAGTATGGAAAAGTATCCATATAAATTTGATTACAATTAGATATACATATTCCATAACAATCCATTTTTCATTAATTTTTTCAAAAAAAATTGAGTTAATATTAATGGTATAATCTCTTCTAATATTTTTCTATTGTTGAAGATTTATCCTACAAAAGTTTTGTCACTCTCACATATAATTGTTATGATAAACAAATATATATACATTATGTATTTCTTATTTAAAGCTTATATGACATTTGGATATACATTTCTCATAAACTTGAGTGAATATTAATGTTATAATTTCTTCTAATATTAACATATTTGTCATTTAATTAGTTGATGGTTTAAATGTGGCAAAAAAATCTCCATATTTATTTTGATGGTGTAAATTTCATTTGGTAGGAAAATAAAGTTTACTCAATTGAGAAGAGAAATATGTCTCGAAAAGAAATATGAGAGTTTTTTTGGTATACTAAAAGTTGGGAGATGGAATCTAAAGCAATCTAAGGTGATTGGTTAAATCCTTGTAATAGTAATATAAATTTCATTGAACTTTCATTTCTTTCAATTGAACTTTTCTCATATTTTTTGAAGGTAGTATATTTTAGTGGCAATACACTTTGAAAGTTATGTTTTCTGACGATATTTTTAATTGTCATTCTTATCAGTAATATGTTTTCATCACGTGAAGAAAATAGAGTTCTTCACATTTTGACATGTTAGTGGTAATTCCTAGTTTTTATTTAATATAATAATAAATAATCACATTTGAGACACATGAGAAATATTATTACCTTCCAATTATTTTTTTTTGTAAACTATATTCATATATAATTAATGTTTGGTGTATACAAGATAATATAACAATCTCAATATGATCAACATTCATATTTGAAAGAATATATTTATTGTTGTAAAACAAAACAAAAAATTATATAAATGACGAATCATGCAAAAAAAAAAATTAATCGCATCAATTAAATTGAATTTTTTTTATTTGTTTGTATAAATAAAATAATTAGAAAATATTTATAGGAATTTGGTTCTTTTATATCAACAGAAATTAAAAGCTCAAACATACCTAAAATCGACCACGAATAGCAAGATCATGAGACTGAGCAACCACTATATATGAAGTGTCATTTCTTTCTTTGTACTCTTTTGATTTTAAAAAATAAGGACTATATAAAACATTAAAATGATATAAGAGGTCATTCAAATTATAAATTCATTTCTATTTTTTTAGAAATATAAAATAAATTTAGCATGATAAATGGAGAAGAATGAGGAGAAAACATAACAAATTACAAAATAAAAAGAAAACAGATATTCAACCAAATGGAAAAAAAATAAAAAAGCAGGAAGAAAAAAAAGTAATTGAAAAGGAAAATCTAATAATTATAAGTAAATAATAATTTAATAAAACATAAAAAAGGAAATAAAATAAATTTTTATTCTTAAATCACGTTATTTTTATTTTATTTTTCTCTTTACTTATTTCTCTTAGTCTTTTTCAATTGAGAGTAGGAAATTAAAGAATTAAAATGAATAATTCAAATTACAAAAGCTATGCACATCCTTACTTGTATATAAGAAAAAATGTAATGAATTTATTAAACTAGATTTGAAAATACAATCTTATAATATAAAGGAGAAATACTAAGGGCCGGTTTGGATTGACTTTTGGCTTATGACTTATAATGCAAAAATCATAAGCTCTAACTTATAACTTTTGACTTATTTTTGTTATTTTGATTTTAAAGAAGTGCTTATAAACATTTTTACGGTTATTCATACACTTCAAAACTGCTCAAAAACTATTTTGACTTAAAAATACCTAAAAAAAAAAAAGTCAATCCAAAAGAAGCCTAAAACTACATAACGAAAAAGTTTACAATAAAATAATTTTTTATAAATTATTTAAACACACTTAAATAAATTATTCTATATTTGATATTTTTTATTGCACCTTTACTCTTTTTCGTTATTTTTTCTACTTCTTTTTCTTTATTTACTATTTATGTTTTGTGTCATAGATAATTCTAATTGCTTAATCATTGCTAAAAAAAAGTCATATACGCTACCAAGAAGTTACGATATGTATTTTTTTCATTTGGTTCTTTTATTTGCACATAAAATTCTAAATATTTACTTGTCCGTTAACTTATGGATATAATACCATAACACTTTCTAACATAATTTTTTGCTTTTTCTTTCTAATTTTTTTATCTTACTTAAAAATTTGCGTAATAATTTATATTTATAGTAAATCAGGCATAATAGTTTTCCATTGTTTTTTTATTAGGTATTTATTACACATTTATTTTCAATCAATATAACATACACTATCTAAAATTAAAATATGAGACTCTATATATAAAGCTGGATGATAAAAAAGTGATGTGACATATTTCAATGGCTAATGATCCTACTTATTTTTTGGGGGATCTTTTGGCATTTCCTCTAAATTTTTTCATTTTTATTTTATAAAATCATAAATTTATTTTACACCTCTTCAATAACATATATCTAAATTTTAATTAATTCAATAATGTCTATAACGCCTAACCTTTTATATTCATAACCTTCAAATTATTTTAAATATAAATTTATAACTCCTTAAAATCATACTTATAAAAATTTATTTTCAATATATGATGGTTATTTTATTTTCATTTTTCTACTCTTCATCTTTTATATATTTGGTTGACAATTTTTTTTGAATTTTTTAATTATTATTATATAAAAAGGAATGGTTCTATTACTACTCCACTTCAGTGTCATGTTTATAGTGTTTATTATGTTGGTAATCTTTTCTAATGTTATAATAATTAAGATAATAAGAATGATGTTGTATTATTTATTTATTTATTTATTTATATAGTTAACTAATGATTTCTATTTATTTTGTAGTTTATATAAAGTGTTGATATGTTATAAATTTATAATTTTATTTGGTTCAAAATAGTAAACTTGCGAATTTATTGAACATAATTATCTCTGCTCTTTCTATTTAGTTCCTCAAAAATGACAAAATAGTTCTTTTTCCCATGAGTATTCAATTAAAAATTATTCTATTACAAGTTTTAAATAACATTGAAATCTACAAAATAATATGTTGAGTTTCTTAAGTTTTTCATCTTTATTATATTTTTTTGCTAAAAAATCTGTTTATTCTTATTTATTTTTTACTTTTACAATTTTTCTATTTTTAATTGTAGAATAATAAATATGTCAATTAACTATTCATTTATATTCGTAAATATAAAACTTAAGGATCATTATTTTCATTACTATCATGATTTTATTATGATAATCTCTAAATAACTAATAGTCATTTTAGTTCTATAAATAAATGCATTGTAAGACTTTGGGCAAATGGTCACATTAGTCTTTTAAATTATTAAGATTTCGATACATAATTTATTCATCCATTAATTTGACTCGAAGAATAAAACTATTGAATGATCATCAACTTGTGGAAATAGATGTCAGACAAGAGTACGAAAGATTGTGTATTAATTTCGTGTATATTTTTTATTTTAATCAATAGGACTGTAAGCGGGGTAAAAATAATGTTGCATTCTTTTTCTATAGTTCTCTTTATTTTTTATTTTATACGGAAAGAAATTATGGTTATAAATTTAATCATATTTTTATGGTTCAAAAAAGTAACTTATGACTTTGTTGGAAGTTATCTAACTATGTCACGACCCAAATCCGGGCCGCGACTGGTACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAAGGTAATATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATAAAATCAATAACTATTATTATTATTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATAATCAAATTACTAAACTAAGAGTATTCTAAGAAACTAAAAATACATAAGAAGCTAGTCCATGCTGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATTTAGTAAGACTGGCTTGAATTACTGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATAAACCAGAAGAAAACAATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATGTATTAAGAAATATCATAAAATCAACTAATAACCTTAGCATGCAGCATTTACAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTCATTTGGGAATTTAGTTCATTAGATTGGATATATTAACATATTTCAAGATTCATTATCTTTATTCCCCTCGTGTCGGTACGTGACACTCCGCTCCTCAATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGCTTCGGAACGTGACACTCTGATCCTCATATACTATCCTGGTACCGGAACATGGCACCCGTTCCATATTCTATCCTGGTGTCAGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGAAACGTGGCACTCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAATGTGGCACCCAATCCCCTAATCTCACCACTTTCGTTCACCAAGCCTTCTTTTATACCAAGGCATCATCACTAACAAAGTAGATTAGGGTTTCTTTTCAAGATTTGGTATTCAATAGTTTCATCATGCTTATTTATTCACAATTACATAATCACATCATTCATGCAAGCATACAATTAAGCATATAGAAGGTTTACAATACTACTAACACTTATCATTCGCTATTAAGAGTTTACGACGAATAGCATGAAAACCATAACCTACCTCCACCGAAGAATTGCGATCAACAAGCTGTCTTCTCAAAATCCTTGCTATCCTCTTCGTTTCTCTCTCTCTCTACTGGTTCTCTTTCTTTTTCTGTCTCTTCTTGTTCTTTCTATTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAAGTAGTATATAATTAAGAATAATAGATGGCAATAATACCCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGAATTTGAGTTAAACCCACGAAATATATAATTATAGCAGGAATAGTCCAAAATGCCCCTTTAAAACTTAACCAGGAATCCGACTCCAACCGGGATTACGCAAGCTGTGACGGGCCGTCGCGCCTGTGACGGGCCGTCGCGCCTGCGACGGTCCGTCCTGCTGTCAGTCGCATAGTTCAGAAACTTGATTTTGGGTGAATGGCCTGTGACGGTCCTTCACACCTGTGACGGTCCGTCCTGCCACTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGCTCCGTCGTGCCCTTGACGGTCCATCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACAGGTCGTTACA</genome_strand>
        <mrna_strand>GCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGACAGGACGGACCATCACAGGCGTGACGGACCGTCATAGATTGTTCAGTGGAAATTGACTCTCTGACCCTTGCGACGACCTGCAGGACGGACCGTCACAGTCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTTGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTT-GGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATGTTAATTTGGGGTAAAAGAAAGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U599792" ref_strand="+" ref_description="SGN-U599792 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tattgtaanccctactatatgcttaattgtatgtttgcntgantatgattatgtgattgtgataagataaacatgatgaaaatattgaatcccaaatcttgaaaggaaactttaatatacnttattaatgatgatgccttggtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="29739" stop="30484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30039" g_stop="30184" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-U599792" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>146</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30039" e_stop="30184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATA</genome_strand>
        <mrna_strand>TATTGTAANCCCTACTATATGCTTAATTGTATGTTTGCNTGANTATGATTATGTGATTGTGATAAGATAAACATGATGAAAATATTGAATCCCAAATCTTGAAAGGAAACTTTAATATACNTTATTAATGATGATGCCTTGGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U599718" ref_strand="+" ref_description="SGN-U599718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205427|gb|ABI34389.1| (e_value=5e-23) Polyprotein,; ">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="38924" stop="39701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39224" g_stop="39400" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-U599718" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39224" e_stop="39400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGGTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="39140" stop="40231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39439" g_stop="39931" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39439" e_stop="39931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAATTCCGCCTGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAATCGCACCACTTCCGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCATCGTTTTTGGAAGACCAACCACGAAGTCCATTGCGATCCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAAAGTCAACAACATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGATACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U593741" ref_strand="+" ref_description="SGN-U593741 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cagccctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="-" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="44799" stop="36772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44500" g_stop="44239" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44238" i_stop="44085" i_length="154">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44084" g_stop="43827" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="519" r_length="257" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="-" ref_id="SGN-U593741" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U593741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44500" e_stop="44239"/>
          <exon e_start="44084" e_stop="43827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAATCTACTTTGTTAGTGATGATGCCTTGGTATAAAAGAAGGCTTGGTGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCATGATAGAATATGGATCGGGTGCCACGTTCTGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTTCGACACCAGGATAGAATATGGATCGGGTGCGACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCAACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTATAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTAAGATATTGCTTAATACATACT</genome_strand>
        <mrna_strand>CAGCCCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATG..........................................................................................................................................................GATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U603972" ref_strand="+" ref_description="SGN-U603972 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>attcaaaccctcattcttttagcctaattagtatataattaagaataaaagatgacaataatagcccactaattaacttaaggttaactcttttatcccccaagaaattgagttattaatatagacccacgaaatatataattatagcaggaataggccaaaacgcccctttaaaacttaaccagaattccaacttcaactgggattacgcaacctgtgacatcccgtcgcgcttgcgacggtccgtcatgcagggtcgtcagaaacttgatttcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="44495" stop="45315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44795" g_stop="45047" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-U603972" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44795" e_stop="45047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAACCCTCTTTCTTTTACCCTAATAAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGAATTTGAGTTATTAATATAAACCCACGAAATATAAAATTATAGCAGGAATAGTCCAAAACGCCCCTTTAAAACTTAACCAGGAATCTGACTCCAACCGGGATTACGCAAGCTGTGACGGGCCGTCGCGCCTGCGACGGTCCGTCCTGCT</genome_strand>
        <mrna_strand>ATTCAAACCCTCATTCTTTTAGCCTAATTAGTATATAATTAAGAATAAAAGATGACAATAATAGCCCACTAATTAACTTAAGGTTAACTCTTTTATCCCCCAAGAAATTGAGTTATTAATATAGACCCACGAAATATATAATTATAGCAGGAATAGGCCAAAACGCCCCTTTAAAACTTAACCAGAATTCCAACTTCAACTGGGATTACGCAACCTGTGACATCCCGTCGCGCTTGCGACGGTCCGTCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U564357" ref_strand="+" ref_description="SGN-U564357 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>agacatggtttctaaaaccgagtaactaatagttatttttctttggtaacaataccatttcgtacactagtaggcaacggattatcccttggaaatccaaataagcaccaaaatttttatccatatattctgtggcgttatcaattcaagatttttatagcttcaaatcatctggaagcaagagaaaacctcactttttgccttgacaatcagtaaagataagaaaccatcgacttttcaaacaaagaagcagtttagtaggacgaatcaagaggaacagcagtttcatgcttgctaactaatgattttgtgattcttgggttataataagttttaattggtttgttagattgaaaaaatggaacatgcaaaagtttttgttagtattctctcctatatgattttcttttttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="90497" stop="91525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90797" g_stop="91223" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-U564357" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90797" e_stop="91223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGGTTTTTAAAAGGGAGTAACTAATACTTAATTTTTCTTTGGTAACAATCCCATTTCGTACACTAGTATAGGGCAATGGATTATCCCTTGGAAATCCAAATAAGCACCAAAATTTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAGGTAAGAAACCATCGATTTTTCAAACAAAGGAGGAGTTTAGTAGGACGAATCAAGAGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTGAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGATTTTCTTCTTCTTCTTTTTTTT</genome_strand>
        <mrna_strand>AGACATGGTTTCTAAAACCGAGTAACTAATAGTT-ATTTTTCTTTGGTAACAATACCATTTCGTACACTAG--TA-GGCAACGGATTATCCCTTGGAAATCCAAATAAGCACCAAAATTTTTATCCATATATTCTGTGGCGTTATCAATTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAGATAAGAAACCATCGACTTTTCAAACAAAGAAGCAGTTTAGTAGGACGAATCAAGAGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTGAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGATTTTCTTTTTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U564356" ref_strand="+" ref_description="SGN-U564356 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|4204288|gb|AAD10669.1| (e_value=9e-50) Hypothetical; (*ATH) AT1G04020.2 (e_value=6e-51) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein, contains Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain | chr1:1036563-1040223 FORWARD | Aliases: None; (*SWP) sp|Q9UGU0|TCF20_HUMAN (e_value=9e-11) Transcription factor 20 OS=Homo sapiens GN=TCF20; ">
      <seq>cctttacactagtatagggcaatggattatcccttggaaatccaaataagcaccaaaatttttattcatatattctgtggcgttatcagttcaagatttttatagcttcaaatcatctggaagcaagagaaaacctcactttttgccttgacaatcagtaaagaatatagtccgtacaggaaactgacaaatagttggggtttaagacataagcaccaaaaattttattcatatattctgtggcgttatcagttcaagatttttatagcttcaaatcatctggaagcaagagaaaacctcactttttgccttgacaatcagtaaagaatatagtcagtacaggatactgacaaatagttgggggtttaagacatatttcatgaaatggatattaagcagcaaaagaaactaaactctggtttgtcagaaatgagcttagaaagtcatgatcatattctccaaagatgccctagttctgaaattgttgctgattccaactacaatttggagtataaaatatgtgaatctcctaatgttgttcagccaaaagcagttatagatcaacatcctccgaaagcaagtgtttgtgctttctgttattctgctaagaccacagagaaaactggaccttttttgtactttgcaaatggaagggaagttgtgggtaatgttacttctctttccaaagtcatatgtgtgcacagtaagtgcattgaatggacacctcaagtatattatgaaggagaaattataaaaaatttggacaccgagttggcaagagctacaaaactcaagtgtagtagttgtggcatgaagggtgcagcgcttggctgctacatgacgtcttgcaggaggagttatcatgtgccctgtgcatttgaaatccaggattgccaatgggatatggagaactatgtgatgctgtgcccagtccataaatctgttaaatttccaagtgagaagtcaaagtctatagaacatatcaggagggaaatgcatccaaaggcttctcccctaaccaccgagcaattgactttttgggcaagatcatcagatggaccaaaagaatgcccccccccccccccccccaatataatcagaagataagtacatgttggcgaaatttgatgatatgtgtggtgcaactgcgcgcaagttctggagaccaaatgtcacacatgttgttgcccccactgatgtaaagggcgccatgcaccccaacaatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="90560" stop="99756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90856" g_stop="91018" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91019" i_stop="91259" i_length="241">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91260" g_stop="91422" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="326" r_length="163" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91423" i_stop="91651" i_length="229">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91652" g_stop="91943" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="618" r_length="292" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91944" i_stop="92140" i_length="197">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92141" g_stop="92241" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="719" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92242" i_stop="93421" i_length="1180">
            <donor d_prob="0.500" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93422" g_stop="93608" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="906" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93609" i_stop="93708" i_length="100">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93709" g_stop="93818" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="907" r_stop="1016" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93819" i_stop="98734" i_length="4916">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98735" g_stop="98825" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1017" r_stop="1108" r_length="92" r_score="0.769"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98826" i_stop="99336" i_length="511">
            <donor d_prob="0.995" d_score="0.57"/>
            <acceptor a_prob="0.965" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="99337" g_stop="99457" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1109" r_stop="1230" r_length="122" r_score="0.868"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-U564356" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>1228</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90856" e_stop="91018"/>
          <exon e_start="91260" e_stop="91422"/>
          <exon e_start="91652" e_stop="91943"/>
          <exon e_start="92141" e_stop="92241"/>
          <exon e_start="93422" e_stop="93608"/>
          <exon e_start="93709" e_stop="93818"/>
          <exon e_start="98735" e_stop="98825"/>
          <exon e_start="99337" e_stop="99457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTACACTAGTATAGGGCAATGGATTATCCCTTGGAAATCCAAATAAGCACCAAAATTTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAGGTAAGAAACCATCGATTTTTCAAACAAAGGAGGAGTTTAGTAGGACGAATCAAGAGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTGAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGATTTTCTTCTTCTTCTTTTTTTTTTGAAGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCCGTACAGGATACTGACAAATAGTTGGGGTTTAAGACATAAGCACCAAAAATTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGGCTTGATAATCAGTAAAGGTAAGAAACCATCGTTTTTTCAAACAAAGAAGGAGTTTAGTAGGACGAATCAAGGGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTAAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGAATTTTTTTTTTTGAAGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAGGTGAGTTATCAGTACAGGAGAAACTTCAAGCTATCAGCTGTCTTGCTTTATACTTTTCTTAATACTCACTCCACTGCTATCATTTGGAAAGTTATCTAATTATTTTGTGGTCCACTCCTTTGTTTATCTGCACATATTCTGCTATATGTAGCCCATTCTTGATACTAACTTTTTCATTTTTTGTCAAATATTTGCAGAAAACTGGACCTTTTTTGTACTTTGCAAATGGAAGGGAAGTTGTGGGTAATGTTACTTCTCTTTCCAAAGTCATATGTGTGCACAGTAAGTGCATTGAATGGTAGGTGGTTTAAATCACTTTGCTTGATATTCTTCATTAAAAAAAAAAATCACTTTGCTAGATATTCCAGATATATTTTTGTTTTATAATTACTTGCCATTTCAAAAAACATAATAATGTTTGATTATTGCGCAACTGATAAAGGGAATCTTTAAGTAGCAGTTAAGTGACAGCTCAATCCTGTGCAATCACTTTATTTCCTTATGTAGGTGTTGGATAACAGGATGAGATGGAACAAGTGGACTTTAAATGCATTATGTCTCTTCATATTTATGCTTGAATTATTTAGCTGTGGATAGATGTTATGGACAATTGCAGTTGGAGAAAAAAAGGAACCTTCTTTTGTTGGTCTAACGAATTCTTTTTATTTAATAGAAGTGTCAATATTCACATACTAGCTCATTGGACACTAGAGTTAGATCCTCAAAAATAACCAAGAGGAAACTATGGTTAGTTGGTCAGCTAAACAAAACAGAACCAAGTCTACAAACAACGAAAACAACTAAGCCTATCTAAACAGCTTGTCCATTTACCCACTATATGTAACTGTATAACTATGACTCTAATGATAGCTTTGCTTTCATGTGCTTTCTGACTGAATCTCAACTTTTTCGATCTAACCAGAGATGATAGCAGTGGCTACAAATAGAAACCCCATGATAGCATTCATAGATCTTCTATTGTTCACCTTGACTGACAGCCACCCTACCTCAGCCTCCCATGATCCGATCTGCCTATTAAGTCCCATACAATGTAGTAGAGTCTTCCAGATATGCTGGGAATAGAGCTATCAAAGAACATATGAGCATGAACTTCCTCCCTGCAGATGCACCAAGAACACAATCCAAATGTCTTTAGTAACCTTTGGTTGTAACAATCGAACATCGTAATCTGTTTTGCTTATGAAACTGTGTTTTTAGTGAATTTAGTCATATTTGAATAATCCAGATACGGCTTAACTGATATAGAGCTAATCAGGCAACACGTATAGGCTGTTTCACTACATGACTTGTATCTCCACTGCTAAAGCATAATCTCATTCTTATATTACTTCATATTTCCGTTGATCCTTTGGTGTGCTGCTTTATTTGTGAACGCCACAATTATTTGCTATTCAATAAACTTAGGTAAGTTAGGTTTGATTGGATACCTTTTCGGAACTTAATTTCATTGGTTACAGGACACCTCAAGTATATTATGAAGGAGAAATTATAAAAAATTTGGACACCGAGTTGGCAAGAGCTACAAAACTCAAGTGTAGTAGTTGTGGCATGAAGGGTGCAGCACTTGGCTGCTACATGACGTCTTGCAGGAGGAGTTATCATGTGCCCTGTGCATTTGAAATCCAGGATTGCCAATGGGATATGGTAAGTAAATACAACTAGAAGCTAACATATTTATCAAATTAAGCATTGTAAAGTTTTCATCTTCTTATTTTCCCTTAAAAGTTCACATATTTAATTACAGGAGAACTATGTGATGCTGTGCCCAGTCCATAAATCTGTTAAATTTCCAAGTGAGAAGTCAAAGTCTATAGAACATATCAAGAGGGAAATGCATCCAAAGGCTTCTCCCCTGTAAGAAGAGTAACTAAGGCACTTGCTATTTTGTTTTCTATCAGCTCTTAAATTATTGGTAGTTGTTGAGAATGATAAAAACATCATCATATGAATTTTAAAATCTGTGTGCTACTACTTCAATCTACCCACCTGCCTTAAACTCCTTGGTTTATGTTTTGTTAATTTTGAAACTGGTGTAACTTCCTAGTACCATCAATATTTTATACTGGTTTTCTAGATATAAATAATGTAAACTACTGCTTTGACTTCAAAATAACATTATTATTTTTAAAAAGAAGAATTAATTCTAGTTAACAAGATGTTCGGCATTTGTTTGCAATACATTACCTTGGAGGTTGTTGTAAAAACTTTATTATTAATAGAGAAAATAGTCAATTACCTCCCAACCTATTAGCCAATACCAACTACACACCTATGATTCATGGGTACCTCTTGAACCATTTCAAAGTGAAATTGATTCCACCCTAAAATATCATAATCAGTCATGTGTTTTATGGTGAAATACACACGCTTGACACGTGTATTTCATCAGCTAATCTTTTTCTTTTTTGTCCTTCATCTTCCTTTCTTCTTCAAAATCATCATTTCAGCCCTAATTACTCTAAAACACCATTTGTTTTACCTAAACAAATTCTTATGTGTCTAACAAATCAGAATCAAATCTAAGGCACTACTTTATCCATACAAAATTGTTGCCATCTTCTCTGAGCCATCACCTGTCAAGTTCCAAATAGAGGCAAAATCAACTCGTAACGTCAATTTAAAAATTCGTCATTCTTATCTCTCCAAAATATTCATGAACATTTATAATATGAGATTGGCTTTGATTCTTAGTGGGTTCTACAAAAAATATGGATGATGGTGAGTTATGGCTACCTAGTACCTTCTGCATGTAGCAGTTGTTTCCATTTCAGTTCCTTCTAATAAGTTCAAAAACAACCACCCCATTGCTTCTTCTCTTTGTTGTTGTTACTCTTGAGTCAATGACTTAGAAAGAGGAAAATTAAAGGATATGCCTTTTAAAAATGGATTTGATTTATTAGATGTGTTCTAAACAAGTCTATTGAATAATTATGTTCATAAATGCATCAATTGCTGGCAATTTTGTATACCAGACATTCATGTATGAAGCTTCGACAATGATAATGGTGGAGGAGATATAGTTGTTTAGGTAAATAACGAGAAAGAGAAAAAAAAGCAAAAAGAGGAGAAAAATTCTAAAAGAAAAAGAATAAAGGCAACTCATTCTCTTTGAGAGAGTGAAATGCATTCTCTGTGCCAACTTAACACTTAAGGATTTATTTATTACATTTTAAGTAGGCCAGGGGGTAATAGGACTCTATGAACTATATGTGTAGTTGGTCATTAGCTAATAGGTTGTGGGACGGGGTATGCATGACTATTTTCTCTTTATTAATATGAAGATTTTAGGAGTTTAATTTCAGCGTTCTAAAATAACTTTGGTAAACATAGATAATTTTTCTTTCTAACTTTTATATAATTTTGTACCTTTTTTTTTGTCATCTTCAATATTGTTTCAACAACAACATACCCAGTGGAATCTCACAAGTGGGTTTAGGGATGGTAGAGTCTATGCAAATCTTACCAGTACATCATGGAGGTAGTGATGTTTCAAACTGACGCTTGACTCGAGTCCAACATATCTTGTAAAAAGGAGAAACTTGTTCTGAATGGAAACCCTGATTGAGACCACCCACACGGTGATCAAAACTCTTCCTTATTTGCTTCAGTATCAATTGATTGACACATGAACGAAGCTGTAACGGAGCATGTAGGTGATGATCAAGCACGACTTTAACAGCTGCCTGTGATTGAAAAAAAAGAGAACTTGATGAGATAGTTCGTGCGGTGAATTTCTCACCTCTCTATTGATCTTTCCCTTGCCGTATCGGTAAAGCTAGAAGAGCAACCATCATTGGCCGACAGCTTACTGGCAAACCTTCCATTCTTATGTTTACATCACCTCTCTTTCTCGCATTGACCAGACAATGGTTTCAAGGGAGCATCCTATGGGGCAACCATAGCTTGAACCGTCCTTCTCGCAGTCAACTATATAACTTAGGTAGCAATGGTTTGAGCAAAGTAGTGGTTAATCTTCGTTGTGTCCTTAGGGTGGGCGACATGAATAACTTTTCTAGCATCAACATGAATTGACCAAAGACTAGAGTAGTTGTCATCTTTTTTCATAATAGTCATCCAACAAGAAAGGCAAAGACCACATAGCTTAGTGGAATAGGAAAGAGAGTGTCGAGCACAACATCCATGTCACTAGAGTTTCTTTTCATTTATTTGGAGAAGGAATGAAAAAGGCTTTTTCAAGAAGGCATGATTGTCATGTCGATCGACAATTGCGAAATATTATCTCTAGGTCCCTCACTTTAGGGCTTTCTTCCACCGTTGACAAACATGGTTCAACGGGCCAGCTATGCTTCCTCTTCTAAAACAGTGACACACTAGTCTGATTCCCTCTTCAGAAATTGCCAGAAATCCTTCTATTACAACCCCAGTAAACAGGGCATTCAAAACATCAATCTCATTCTATGCTCTATGCCATCTTTCTTATACTTTGACTATTGATTCATTTGCACAAACGTCCCTCACAAAGGAAAGTGGGTAAAGGCCCGAATAAAAAGACTCTTCTTTCTTTTATTTGAAAAGAAGGTGAGAGCCTTAACCCTCTGGTTTGTTGGTAAACCCTTCAATGATTGAAAGCCAGTGTCCTCTTTGAAGAGTTTGGTGAAAGAATTGGCAGCATTCGAGGATGATCTGAGCTGAGGTCTAGCCCTAAGGGATAATGAGCATGGCAACTACCGTAAAATGAAAGGATAGGGGCCATACTCCATAGCCTCCTTTATACGAGATTTCCTAAGCTTTCTCGCTTGTTGCATTCTATTTCGATGAAAGGACATCATATAGTCTCATTCAAACAATGAAAGATAGGTAATCGACTCTATCCAAAACTGAGACTCAATAGGGGAAAGGGACTTAGGGGACAACTAGAAGATAAATGATCAAGCAAGCGGACACAATCAAAGAGCATCACCACTTTTCAATCGTCAAAAGTGAGATCTCTTTTAGTTCAGCCTACTTTTATCTTTTGAGTCAGACTCTTAATACAGGAAATCAGGTTTTTTGAATGTCTTTCTTCTGACCTTGCCTATTAAGTAAGTTAGTTAGAGACCAGAACTGGACCTGCGAGAGACGAGATTTCCAGTAAGAGTAGGTGCATGTGAAGTTGAGAGTTGGTCAAAAGAGGCCGCGCACCTTAAGTTGCACTAGTGGATTGAATAACCTTTTTTTAGTGAACAAAGTGTATGTGCTCTTGGTTAATTTAAAAAACAAGTATTGGCGAAGATCTGATACTATAAGTAGGACAAAAGCCTTCAAAGAGTTCCACTTATCAAGGGAACTCCTTTCTTGACATTTGTATTTGAGAGTGAGAGCTATGCTTAGGTCAGTTCCCTCAGACAAGATATTCTGGAGGCCTAATTCCAAACAAAACTCAAGGTAGAGGAAGCCCTTCGTTTGGACAGGGTTACTGAAGACTCTCTTTCTGCTAAAAGGCTTTTGATTAGAGGGGAACACTCTATCCATTTGGGAAGCCATTATCCTTGAAAATCTACTTGGACCACCTATTTTTTCTTTTCTTTTGAGAAGGTAACATTTGTGTATATTGACAAGTCAGTACATGGGTTGCACTGAAACCATATGTGCATATATATCAATAGACAGAAAAACTAACTCAAAATCCTGACAAGATCCGTCTATAATTGAGTCGGTATCCTCAAGTATATTTGTTTGCACCAGAAACAAAAAAGTCAAACAGTTTAGTTTGATCATCTGTAGGTCACAATTTTTGCTTTCAGAACATCTTGAACTCCTTTCCTTCCATATTGTCCACCAGATGCAAGTTGGGACAATTCTCCATCCGTCTCTGTCTGCTGCTCGTACTCCTGCTTCCTCCCAACCATATAACAAGTGAGTTATTTTGTTAGGCATGACCCAGCTAATGTCCCCAAGTCTAACAAAAATCATCCACAGTTGTGTAGTTTTCTTGCATTTTAGGAAGAGATGACTAACTGTCTCAACCTCTTCAGATAGAGAACTATGGAACCCACTGCAGCCCGCCTTATAGAAGGCTTTTTCAAGCGATTGCTCGACAGTACTTAGATCTGGTCTTTGAAGGAATAAAAAAAAGGAGAGACTGGTTAACACTATACTAGCCTCACCCTGGATCCACCCTGATTGAATGACAAGGTGTTGGTATCTCTTGTCATAAAAATGTAGTGAATCCACAATGTTGCTATTTGTTAAGTGAAGCTATAAGAGGAACTGCTTGAGTTGATGGTATAATTAGGTTTCACTATGCTCTTGATAAGCAAGTGTACCTCATTTGATTGTCATGTGGAGAAGAGGCTTGTTAAGGTATTAGTATGTCTAATAGGAGTATCTTCACATACATATGCACACTAGAAGAGATGTGTATCTGTTTAGGTTTTAAAAGTCTAGTTAAATACTTAAATTGAGTAGTCCATTATGATTTATCCATTAGTGTGAAATTGGGAAAATGTTTTTGTTTTCTCTTTCTTCTAGACTTTGAATGAAGTAATATCCTTGTCAAGAAGTTAGCTAGCATATCTATTGGAACATATTGGATATCAAGCTCCGTTACATAAAGGAAGCCACATAATATCGGGGTTTATTAGTTGAAGAGCTTTATATTAATTCATGAAATACATAACAAAACTTGCTTGTATACTATGACACATCATTTTTTTTCATGTAAATCAAAGGGCAATTGTGATATGTGCAGTCATTAGAATATGAGGGTAATTGTCCTCATCTATAAGCAAGTCCATAACTCTCTTCCTTTTTGACCATTGTGCATGCAGAACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGATGGACCAAAAGAATG-GGTTCTTTGTGGGTCTGCTCTATCCTCAGAAGATAAGGTTGGTTTATCTTATCTGCAGTGACTATATCCTCTGCTAGTTCTATCATATGGCCCTTGTATCTATTTAAGAGTGTTTGATCAGTCTTACAATCATGTATGCAGTTACAAGTCACATGGAGAACTGCCATTGGCATGTTTCCAGTCAAAAACCCTTTGTTTATTTGATTATTTCAGCTCTCTGGTATACTAGAGAAGTCAACTTTTGATGGTCATGCATTGATGGTTTAACTCTACGTTTGTCAACGTTAGTTGATGTCTTAGTCCTGGTTGATCATTGATGCATGTCCTGGGAATAGCAATGTATGAAAGATCCACTTATTTTAGTATCTTCACATTTATTTGCTTTTACTTTTATGGTATTTGTACTTTAGCCTATTTTAATGCCCTTTTATTTTGAGAAAGCCTTTGAAGTAAAACAAATTGTAACTTCTTTTTGTTTGGAATTGTTAGCCGAAAATGGTGCATTTCAGACTTTATTAATCCATTATTGGTTTTTTGACATTTTGCAGTATATGTTGGTGAAATTTGCTGGTATGTGTGGTGCAACTGTGTGCAAGTTCTGGAAACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTG-CATGCACCAGAACAATGAAAG</genome_strand>
        <mrna_strand>CCTTTACACTAGTATAGGGCAATGGATTATCCCTTGGAAATCCAAATAAGCACCAAAATTTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAG.................................................................................................................................................................................................................................................AATATAGTCCGTACAGGAAACTGACAAATAGTTGGGGTTTAAGACATAAGCACCAAAAATTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAG.....................................................................................................................................................................................................................................AATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTACAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAG.....................................................................................................................................................................................................AAAACTGGACCTTTTTTGTACTTTGCAAATGGAAGGGAAGTTGTGGGTAATGTTACTTCTCTTTCCAAAGTCATATGTGTGCACAGTAAGTGCATTGAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCTCAAGTATATTATGAAGGAGAAATTATAAAAAATTTGGACACCGAGTTGGCAAGAGCTACAAAACTCAAGTGTAGTAGTTGTGGCATGAAGGGTGCAGCGCTTGGCTGCTACATGACGTCTTGCAGGAGGAGTTATCATGTGCCCTGTGCATTTGAAATCCAGGATTGCCAATGGGATATG....................................................................................................GAGAACTATGTGATGCTGTGCCCAGTCCATAAATCTGTTAAATTTCCAAGTGAGAAGTCAAAGTCTATAGAACATATCAGGAGGGAAATGCATCCAAAGGCTTCTCCCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGATGGACCAAAAGAATGCCCCCCCCCCCCCCCCCCCAATATAATCAGAAGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATGTTGGCGAAATTTGATGATATGTGTGGTGCAACTGCGCGCAAGTTCTGGAGACCAAATGTCACACATGTTGTTGCCCCCACTGATGTAAAGGGCGCCATGCACCCCAACAATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U564355" ref_strand="+" ref_description="SGN-U564355 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>gaaaacctcactttttgctttgacaatcagtgaaggtgataaactatcgatttttcaaacaaagaagcagtttagtaggacgaatcaaggggaacagcagtttcatgcttgctaactaataattttgtgattcttgggttataataagttttaatttgtttgttagattgaaaaaatggaacatgcaaaagtttttgttagtattctctcctatatgatttttttttttttaacgctttacacaaatttgatcctctctttccagaatatagtcagtacaggatactgacaaatagttgggggtttaagacatatttcatgaaatggatattaagcagcaaaagaaactaaactctggtttgtcagaaatgagcttagaaagtcatgatcatatgctccaaagatgccctagttctgaaattgttgctgattccaactgcaatttggagtataaaatatgtgaatctcctaatgttgttcagccaaaagcagttatagatcaacatcctccgaaagcaagtgtttgtgctttctgttattctgctaagaccacatttatcagtacaggagaaacttcaagctatcagctgtcttgctttatacttttcttaatactcactccactgctatcatttggaaagttatctaattattttgtggtccactcctttgtttatctgcacatattctgctatatgtagcccattcttgatactaactttttcattttttgtcaaatatttgtagaaaactggaccttttttgtacttgcaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="91088" stop="92471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91388" g_stop="92172" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-U564355" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91388" e_stop="92172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCTCACTTTTTGGCTTGATAATCAGTAAAGGTAAGAAACCATCGTTTTTTCAAACAAAGAAGGAGTTTAGTAGGACGAATCAAGGGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTAAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGAATTTTTTTTTTTGAA-GCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAGGTGAGTTATCAGTACAGGAGAAACTTCAAGCTATCAGCTGTCTTGCTTTATACTTTTCTTAATACTCACTCCACTGCTATCATTTGGAAAGTTATCTAATTATTTTGTGGTCCACTCCTTTGTTTATCTGCACATATTCTGCTATATGTAGCCCATTCTTGATACTAACTTTTTCATTTTTTGTCAAATATTTGCAGAAAACTGGACCTTTTTTGTACTTTGCAAATGG</genome_strand>
        <mrna_strand>GAAAACCTCACTTTTTGCTTTGACAATCAGTGAAGGTGATAAACTATCGATTTTTCAAACAAAGAAGCAGTTTAGTAGGACGAATCAAGGGGAACAGCAGTTTCATGCTTGCTAACTAATAATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTTGTTTGTTAGATTGAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGATTTTTTTTTTTTTAACGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATGCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCAC--A--T---TTATCAGTACAGGAGAAACTTCAAGCTATCAGCTGTCTTGCTTTATACTTTTCTTAATACTCACTCCACTGCTATCATTTGGAAAGTTATCTAATTATTTTGTGGTCCACTCCTTTGTTTATCTGCACATATTCTGCTATATGTAGCCCATTCTTGATACTAACTTTTTCATTTTTTGTCAAATATTTGTAGAAAACTGGACCTTTTTTGTAC-TTGCAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U564354" ref_strand="+" ref_description="SGN-U564354 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|4204288|gb|AAD10669.1| (e_value=1e-56) Hypothetical; (*ATH) AT1G04020.2 (e_value=7e-59) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein, contains Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain | chr1:1036563-1040223 FORWARD | Aliases: None; (*SWP) sp|O70445|BARD1_MOUSE (e_value=4e-18) BRCA1-associated RING domain protein 1 OS=Mus musculus GN=Bard1; ">
      <seq>gggaaatgcatccaaaggcttctcccctaaccaccgagcaattgactttttgggcaagatcatcagatggaccaaaagaatgggttctttgtgggtctgctctatcctcagaagataagtacatgttggtgaaatttgatgatatgtgtggtgcaactgcgtgcaagttctggagaccaaatgtcacacatgttgttgcaacaactgatgtaaagggtgcatgcaccagaacaatgaaatttctcatggcgattttgagtggaaaatggatcccaactatggactgggtaaaagcttgtgttgcagcaaatggtccagtaaatgaagaacattatgaaataagtctagacaattatggccgttctgggggccccaaagctggaaggttaatggcctcaactaatgggccaaagctttttgatggtttcgagttttattttattggagattttatgccagattacaaaagtgacctgttagatctagtcgagaaggctggaggcacagtcattcacagtgaggagcagttggtgaaacagaatcatgctgcacagggaactcagccatcttctctagtcgtatataactgtgatctatcgcaaggttgctttgaagaaaaaatcagaattttgctgcaaagactagcagaagctgaggatctagccgagcaaatcggttctcagactgttcagcatacttggattctggaatctattgctgcatgtaaattggtacctttctgctaatgagtgatcgcaacaagttttttgtgcaactgaaatacttccacttatggcagaagaacaaaagtagttgtacattttctgcacctggaaaatatagttgaaaatcttaaatgctaaaattttgtgtataaatgtgaaagagatattacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0032G07-hbjSG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0032G07.1" temp_strand="+" temp_description="C00SLm0032G07.1  CU915747.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0032G07 sequenced_by:sanger upload_account_name:uk">
        <position start="93491" stop="100907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93791" g_stop="93818" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93819" i_stop="98734" i_length="4916">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98735" g_stop="98825" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="119" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98826" i_stop="99336" i_length="511">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99337" g_stop="99502" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="285" r_length="166" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99503" i_stop="99841" i_length="339">
            <donor d_prob="0.947" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99842" g_stop="99960" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="404" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99961" i_stop="100116" i_length="156">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100117" g_stop="100607" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="898" r_length="494" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0032G07.1" gen_strand="+" ref_id="SGN-U564354" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0032G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93791" e_stop="93818"/>
          <exon e_start="98735" e_stop="98825"/>
          <exon e_start="99337" e_stop="99502"/>
          <exon e_start="99842" e_stop="99960"/>
          <exon e_start="100117" e_stop="100607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAATGCATCCAAAGGCTTCTCCCCTGTAAGAAGAGTAACTAAGGCACTTGCTATTTTGTTTTCTATCAGCTCTTAAATTATTGGTAGTTGTTGAGAATGATAAAAACATCATCATATGAATTTTAAAATCTGTGTGCTACTACTTCAATCTACCCACCTGCCTTAAACTCCTTGGTTTATGTTTTGTTAATTTTGAAACTGGTGTAACTTCCTAGTACCATCAATATTTTATACTGGTTTTCTAGATATAAATAATGTAAACTACTGCTTTGACTTCAAAATAACATTATTATTTTTAAAAAGAAGAATTAATTCTAGTTAACAAGATGTTCGGCATTTGTTTGCAATACATTACCTTGGAGGTTGTTGTAAAAACTTTATTATTAATAGAGAAAATAGTCAATTACCTCCCAACCTATTAGCCAATACCAACTACACACCTATGATTCATGGGTACCTCTTGAACCATTTCAAAGTGAAATTGATTCCACCCTAAAATATCATAATCAGTCATGTGTTTTATGGTGAAATACACACGCTTGACACGTGTATTTCATCAGCTAATCTTTTTCTTTTTTGTCCTTCATCTTCCTTTCTTCTTCAAAATCATCATTTCAGCCCTAATTACTCTAAAACACCATTTGTTTTACCTAAACAAATTCTTATGTGTCTAACAAATCAGAATCAAATCTAAGGCACTACTTTATCCATACAAAATTGTTGCCATCTTCTCTGAGCCATCACCTGTCAAGTTCCAAATAGAGGCAAAATCAACTCGTAACGTCAATTTAAAAATTCGTCATTCTTATCTCTCCAAAATATTCATGAACATTTATAATATGAGATTGGCTTTGATTCTTAGTGGGTTCTACAAAAAATATGGATGATGGTGAGTTATGGCTACCTAGTACCTTCTGCATGTAGCAGTTGTTTCCATTTCAGTTCCTTCTAATAAGTTCAAAAACAACCACCCCATTGCTTCTTCTCTTTGTTGTTGTTACTCTTGAGTCAATGACTTAGAAAGAGGAAAATTAAAGGATATGCCTTTTAAAAATGGATTTGATTTATTAGATGTGTTCTAAACAAGTCTATTGAATAATTATGTTCATAAATGCATCAATTGCTGGCAATTTTGTATACCAGACATTCATGTATGAAGCTTCGACAATGATAATGGTGGAGGAGATATAGTTGTTTAGGTAAATAACGAGAAAGAGAAAAAAAAGCAAAAAGAGGAGAAAAATTCTAAAAGAAAAAGAATAAAGGCAACTCATTCTCTTTGAGAGAGTGAAATGCATTCTCTGTGCCAACTTAACACTTAAGGATTTATTTATTACATTTTAAGTAGGCCAGGGGGTAATAGGACTCTATGAACTATATGTGTAGTTGGTCATTAGCTAATAGGTTGTGGGACGGGGTATGCATGACTATTTTCTCTTTATTAATATGAAGATTTTAGGAGTTTAATTTCAGCGTTCTAAAATAACTTTGGTAAACATAGATAATTTTTCTTTCTAACTTTTATATAATTTTGTACCTTTTTTTTTGTCATCTTCAATATTGTTTCAACAACAACATACCCAGTGGAATCTCACAAGTGGGTTTAGGGATGGTAGAGTCTATGCAAATCTTACCAGTACATCATGGAGGTAGTGATGTTTCAAACTGACGCTTGACTCGAGTCCAACATATCTTGTAAAAAGGAGAAACTTGTTCTGAATGGAAACCCTGATTGAGACCACCCACACGGTGATCAAAACTCTTCCTTATTTGCTTCAGTATCAATTGATTGACACATGAACGAAGCTGTAACGGAGCATGTAGGTGATGATCAAGCACGACTTTAACAGCTGCCTGTGATTGAAAAAAAAGAGAACTTGATGAGATAGTTCGTGCGGTGAATTTCTCACCTCTCTATTGATCTTTCCCTTGCCGTATCGGTAAAGCTAGAAGAGCAACCATCATTGGCCGACAGCTTACTGGCAAACCTTCCATTCTTATGTTTACATCACCTCTCTTTCTCGCATTGACCAGACAATGGTTTCAAGGGAGCATCCTATGGGGCAACCATAGCTTGAACCGTCCTTCTCGCAGTCAACTATATAACTTAGGTAGCAATGGTTTGAGCAAAGTAGTGGTTAATCTTCGTTGTGTCCTTAGGGTGGGCGACATGAATAACTTTTCTAGCATCAACATGAATTGACCAAAGACTAGAGTAGTTGTCATCTTTTTTCATAATAGTCATCCAACAAGAAAGGCAAAGACCACATAGCTTAGTGGAATAGGAAAGAGAGTGTCGAGCACAACATCCATGTCACTAGAGTTTCTTTTCATTTATTTGGAGAAGGAATGAAAAAGGCTTTTTCAAGAAGGCATGATTGTCATGTCGATCGACAATTGCGAAATATTATCTCTAGGTCCCTCACTTTAGGGCTTTCTTCCACCGTTGACAAACATGGTTCAACGGGCCAGCTATGCTTCCTCTTCTAAAACAGTGACACACTAGTCTGATTCCCTCTTCAGAAATTGCCAGAAATCCTTCTATTACAACCCCAGTAAACAGGGCATTCAAAACATCAATCTCATTCTATGCTCTATGCCATCTTTCTTATACTTTGACTATTGATTCATTTGCACAAACGTCCCTCACAAAGGAAAGTGGGTAAAGGCCCGAATAAAAAGACTCTTCTTTCTTTTATTTGAAAAGAAGGTGAGAGCCTTAACCCTCTGGTTTGTTGGTAAACCCTTCAATGATTGAAAGCCAGTGTCCTCTTTGAAGAGTTTGGTGAAAGAATTGGCAGCATTCGAGGATGATCTGAGCTGAGGTCTAGCCCTAAGGGATAATGAGCATGGCAACTACCGTAAAATGAAAGGATAGGGGCCATACTCCATAGCCTCCTTTATACGAGATTTCCTAAGCTTTCTCGCTTGTTGCATTCTATTTCGATGAAAGGACATCATATAGTCTCATTCAAACAATGAAAGATAGGTAATCGACTCTATCCAAAACTGAGACTCAATAGGGGAAAGGGACTTAGGGGACAACTAGAAGATAAATGATCAAGCAAGCGGACACAATCAAAGAGCATCACCACTTTTCAATCGTCAAAAGTGAGATCTCTTTTAGTTCAGCCTACTTTTATCTTTTGAGTCAGACTCTTAATACAGGAAATCAGGTTTTTTGAATGTCTTTCTTCTGACCTTGCCTATTAAGTAAGTTAGTTAGAGACCAGAACTGGACCTGCGAGAGACGAGATTTCCAGTAAGAGTAGGTGCATGTGAAGTTGAGAGTTGGTCAAAAGAGGCCGCGCACCTTAAGTTGCACTAGTGGATTGAATAACCTTTTTTTAGTGAACAAAGTGTATGTGCTCTTGGTTAATTTAAAAAACAAGTATTGGCGAAGATCTGATACTATAAGTAGGACAAAAGCCTTCAAAGAGTTCCACTTATCAAGGGAACTCCTTTCTTGACATTTGTATTTGAGAGTGAGAGCTATGCTTAGGTCAGTTCCCTCAGACAAGATATTCTGGAGGCCTAATTCCAAACAAAACTCAAGGTAGAGGAAGCCCTTCGTTTGGACAGGGTTACTGAAGACTCTCTTTCTGCTAAAAGGCTTTTGATTAGAGGGGAACACTCTATCCATTTGGGAAGCCATTATCCTTGAAAATCTACTTGGACCACCTATTTTTTCTTTTCTTTTGAGAAGGTAACATTTGTGTATATTGACAAGTCAGTACATGGGTTGCACTGAAACCATATGTGCATATATATCAATAGACAGAAAAACTAACTCAAAATCCTGACAAGATCCGTCTATAATTGAGTCGGTATCCTCAAGTATATTTGTTTGCACCAGAAACAAAAAAGTCAAACAGTTTAGTTTGATCATCTGTAGGTCACAATTTTTGCTTTCAGAACATCTTGAACTCCTTTCCTTCCATATTGTCCACCAGATGCAAGTTGGGACAATTCTCCATCCGTCTCTGTCTGCTGCTCGTACTCCTGCTTCCTCCCAACCATATAACAAGTGAGTTATTTTGTTAGGCATGACCCAGCTAATGTCCCCAAGTCTAACAAAAATCATCCACAGTTGTGTAGTTTTCTTGCATTTTAGGAAGAGATGACTAACTGTCTCAACCTCTTCAGATAGAGAACTATGGAACCCACTGCAGCCCGCCTTATAGAAGGCTTTTTCAAGCGATTGCTCGACAGTACTTAGATCTGGTCTTTGAAGGAATAAAAAAAAGGAGAGACTGGTTAACACTATACTAGCCTCACCCTGGATCCACCCTGATTGAATGACAAGGTGTTGGTATCTCTTGTCATAAAAATGTAGTGAATCCACAATGTTGCTATTTGTTAAGTGAAGCTATAAGAGGAACTGCTTGAGTTGATGGTATAATTAGGTTTCACTATGCTCTTGATAAGCAAGTGTACCTCATTTGATTGTCATGTGGAGAAGAGGCTTGTTAAGGTATTAGTATGTCTAATAGGAGTATCTTCACATACATATGCACACTAGAAGAGATGTGTATCTGTTTAGGTTTTAAAAGTCTAGTTAAATACTTAAATTGAGTAGTCCATTATGATTTATCCATTAGTGTGAAATTGGGAAAATGTTTTTGTTTTCTCTTTCTTCTAGACTTTGAATGAAGTAATATCCTTGTCAAGAAGTTAGCTAGCATATCTATTGGAACATATTGGATATCAAGCTCCGTTACATAAAGGAAGCCACATAATATCGGGGTTTATTAGTTGAAGAGCTTTATATTAATTCATGAAATACATAACAAAACTTGCTTGTATACTATGACACATCATTTTTTTTCATGTAAATCAAAGGGCAATTGTGATATGTGCAGTCATTAGAATATGAGGGTAATTGTCCTCATCTATAAGCAAGTCCATAACTCTCTTCCTTTTTGACCATTGTGCATGCAGAACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGATGGACCAAAAGAATGGGTTCTTTGTGGGTCTGCTCTATCCTCAGAAGATAAGGTTGGTTTATCTTATCTGCAGTGACTATATCCTCTGCTAGTTCTATCATATGGCCCTTGTATCTATTTAAGAGTGTTTGATCAGTCTTACAATCATGTATGCAGTTACAAGTCACATGGAGAACTGCCATTGGCATGTTTCCAGTCAAAAACCCTTTGTTTATTTGATTATTTCAGCTCTCTGGTATACTAGAGAAGTCAACTTTTGATGGTCATGCATTGATGGTTTAACTCTACGTTTGTCAACGTTAGTTGATGTCTTAGTCCTGGTTGATCATTGATGCATGTCCTGGGAATAGCAATGTATGAAAGATCCACTTATTTTAGTATCTTCACATTTATTTGCTTTTACTTTTATGGTATTTGTACTTTAGCCTATTTTAATGCCCTTTTATTTTGAGAAAGCCTTTGAAGTAAAACAAATTGTAACTTCTTTTTGTTTGGAATTGTTAGCCGAAAATGGTGCATTTCAGACTTTATTAATCCATTATTGGTTTTTTGACATTTTGCAGTATATGTTGGTGAAATTTGCTGGTATGTGTGGTGCAACTGTGTGCAAGTTCTGGAAACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAAGTTCTCATGGCGATTTTGAGTGGAAAATGGATCGTAACTATGGACTGTAAGCACTGTTTCCTGTTATATAAAATTGTTTGTGGGATAGGTTTTTCATTTGGTTCTCCATGGAATGAGGGTGAACGTTTAATCGCTATTGAATCAAGAAATGCAATAAAGTAGAATGTGTGGGGGATATAAGAATAAGTTGTTTTGTTATTGAGGGAAGAGAAGGAAATACCTGGATAGATGTGTGACTTCTCCAGAGCCACTTTGAATGCATGGACATTTTTTCGGAAATAGTTTGCTTGGCCTGGGTCAATAGTTAATTAGGTGTCTAATGAAAAGACGGATGATTAATTTCTTTTAATTCCATTCTCCTACCATGGAACTTGTTTATTTGCAGGGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGATGGCCTCAACTAATGTAAGTATCTGGTTATTGCAGCACTAGAGAAACTAGTTTATTATATTCCTTGTGAATAAGCTTGATGGCTAAAGATATTTTTTTCTAGTTCTCAACTGAGGTGGCACATATTTAAAGCTTTAGTATCGAGTAACCAATTATCCCTTTATGTTACAGGGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACTGTCATTCACAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGAAACTCAGCCATCTTCTCTAGTCGTATATAACTGTGATCTATCGCAAGGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGATTAGCAGAAGCTGAGGATCTAGCCGAGCAAATGGGTTCTCAGACCGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTGATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTTCCACTTGTGGCAGAAGAACAAAAGTAGTTGTACATTTTCTGCACCTGGGAAATATAGTTG--AATCTTAAATGCT-AAATTTTGTGTATAAATGTGAAAGAGATATTACAAC</genome_strand>
        <mrna_strand>GGGAAATGCATCCAAAGGCTTCTCCCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGATGGACCAAAAGAATGGGTTCTTTGTGGGTCTGCTCTATCCTCAGAAGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATGTTGGTGAAATTTGATGATATGTGTGGTGCAACTGCGTGCAAGTTCTGGAGACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAATTTCTCATGGCGATTTTGAGTGGAAAATGGATCCCAACTATGGACT...................................................................................................................................................................................................................................................................................................................................................GGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACATTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTAATGGCCTCAACTAAT............................................................................................................................................................GGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACAGTCATTCACAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGGAACTCAGCCATCTTCTCTAGTCGTATATAACTGTGATCTATCGCAAGGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGACTAGCAGAAGCTGAGGATCTAGCCGAGCAAATCGGTTCTCAGACTGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTAATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTTCCACTTATGGCAGAAGAACAAAAGTAGTTGTACATTTTCTGCACCTGGAAAATATAGTTGAAAATCTTAAATGCTAAAATTTTGTGTATAAATGTGAAAGAGATATTACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11559" PGL_stop="11414"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11559" e_stop="11414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="11559" e_stop="11414" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11559" stop="11414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTAATAACATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTTGTATA</gDNA_template>
            <first_frame> Y  C  K  P  Y  Y  M  L  N  G  M  F  A  *  I  *  L  C  D  C  N  N  I  S  M  M  K  I  L  N  P  K  S  *  K  E  T  L  I  Y  I  I  N  D  D  A  F  V   </first_frame>
            <second_frame>  I  V  N  P  T  I  C  L  M  V  C  L  H  E  Y  D  Y  V  I  V  I  T  *  A  *  *  K  Y  *  I  P  N  L  E  K  K  L  *  Y  T  L  L  M  M  M  P  L  Y  </second_frame>
            <third_frame>   L  *  T  L  L  Y  A  *  W  Y  V  C  M  N  M  I  M  *  L  *  *  H  K  H  D  E  N  I  E  S  Q  I  L  K  R  N  F  N  I  H  Y  *  *  *  C  L  C  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0032G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14307" PGL_stop="15119"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14307" e_stop="15119"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="14307" e_stop="15119" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14307" stop="15119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGACGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGGTTCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGTCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCGTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACACTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATATAGAAGTCAATATCCCTATCTGATGGCATACCAGGAAGATCTG</gDNA_template>
            <first_frame> R  I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  V  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  G  S  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  V  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  Q  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  G  M  H  L  V  *  *  S  V  C  S  I  T  L  E  V  V  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  M  A  Y  Q  E  D  L </first_frame>
            <second_frame>  E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  D  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  F  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  S  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  R  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  G  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  L  *  H  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  I  E  V  N  I  P  I  *  W  H  T  R  K  I   </second_frame>
            <third_frame>   N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  T  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  F  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  R  L  F  N  N  S  *  S  C  A  F  N  T  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  *  K  S  I  S  L  S  D  G  I  P  G  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14572" stop="14811"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMSIPRSKSSLWHIRCPYFQLMITRSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14504" stop="14701"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRFKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17009" PGL_stop="14436"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17009" e_stop="14826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="17009" e_stop="14826" e_length="2184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17009" stop="14826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17009" stop="15586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAACAGCGTCAAGGGGCCGTGGTAGAGGTCGTGGGAGGACATCCTCTGGGGGATGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTAACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTTCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTAATCAGGGCCAGACACCCCCAGTGTTTTTTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAAGCACATTTCCTCGTCTGCCTACAGGGCCTGTAATGACAAGTGATAAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTAGTACACAAGATGGGTATAGTAGAATGGTTCGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACTCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCGTTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAACAACGGATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGGTCGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGTCAGACGACTTCACCACAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTTACTACAGACTGTAGTTGGGGGACCACCTCAAACCGGTCAACACTTCTACGAGGGGCCTATGATTGACTCCAGAGAATGTTATGGATGGGGAGATTGAACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGAACGTGGCGGTCGAGGTAATGGTGGTCACCAAAATGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGAGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGCGGTAAAGGTATATAGGTCTTGTGTGGTAAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTTGGCAATGGATGATTTTGATGTGATTCTGGGCATGACTTGGCTTTCTCTGCAATTTGCAATCTTGGATTGTAATGCTAAAAAGGTGACGTTAGCCAAGCCTGGGATAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTTAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCATCAGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGTGTTAAAGGCACAACTTCAAGAGTTATTGAACAAACGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATG</gDNA_template>
            <first_frame> K  N  S  V  K  G  P  W  *  R  S  W  E  D  I  L  W  G  M  R  T  S  T  *  P  I  *  Y  *  G  S  N  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  S  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  K  H  I  S  S  S  A  Y  R  A  C  N  D  K  *  *  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  S  T  Q  D  G  Y  S  R  M  V  R  C  G  V  C  D  L  S  V  S  R  E  L  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  V  L  *  L  V  Y  G  E  V  Y  P  P  D  F  E  G  *  E  K  G  *  V  P  E  P  R  A  R  *  D  V  G  *  C  L  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  T  T  D  S  S  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  G  R  G  N  G  K  I  L  P  R  S  G  R  L  C  D  R  S  G  R  S  E  V  R  R  L  H  H  N  I  D  I  K  K  A  S  K  G  R  *  V  *  W  F  L  H  *  R  T  G  F  G  K  L  L  S  P  T  N  S  V  F  T  T  D  C  S  W  G  T  T  S  N  R  S  T  L  L  R  G  A  Y  D  *  L  Q  R  M  L  W  M  G  R  L  N  I  L  G  K  I  V  P  D  K  V  I  D  P  Q  *  L  E  V  E  V  V  M  V  E  A  V  I  L  E  N  V  A  V  E  V  M  V  V  T  K  M  A  E  V  M  G  K  L  G  P  L  H  H  N  M  V  G  A  T  D  R  R  T  I  G  P  I  V  T  L  S  L  G  G  L  K  R  R  H  L  M  L  S  S  Q  V  I  F  W  F  V  I  A  W  L  L  Y  C  L  I  L  D  P  R  F  L  M  Y  L  P  H  L  L  M  V  *  I  Y  I  V  N  F  L  I  C  L  F  V  F  L  L  R  W  V  S  L  R  *  R  Y  I  G  L  V  W  *  T  L  W  G  E  T  L  M  *  I  W  L  S  W  Q  W  M  I  L  M  *  F  W  A  *  L  G  F  L  C  N  L  Q  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  *  T  R  *  C  G  R  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  L  R  K  *  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  *  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  I  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  C  *  R  H  N  F  K  S  Y  *  T  N  A  S  L  D  Q  V  H  P  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T  D  N  *  T  R  *  P  *  R  T  S  I  L  F  L  A  L  M </first_frame>
            <second_frame>  R  T  A  S  R  G  R  G  R  G  R  G  R  T  S  S  G  G  *  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  G  F  P  P  Q  P  T  L  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  N  Q  G  Q  T  P  P  V  F  F  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  S  T  F  P  R  L  P  T  G  P  V  M  T  S  D  K  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  V  H  K  M  G  I  V  E  W  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  S  K  M  W  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  Q  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K  S  D  D  F  T  T  T  S  T  S  K  R  L  R  K  G  G  E  F  N  G  S  Y  T  R  G  Q  G  S  G  S  Y  S  V  R  P  I  Q  S  L  L  Q  T  V  V  G  G  P  P  Q  T  G  Q  H  F  Y  E  G  P  M  I  D  S  R  E  C  Y  G  W  G  D  *  T  Y  *  E  K  L  S  Q  T  K  L  *  T  P  N  S  *  R  *  R  W  S  W  *  R  P  S  F  W  R  T  W  R  S  R  *  W  W  S  P  K  W  Q  R  *  W  A  N  W  G  H  Y  I  T  T  W  *  E  Q  R  T  D  E  R  *  G  P  L  L  R  F  P  W  A  V  *  S  G  G  I  *  C  C  H  H  R  *  S  S  G  L  *  L  H  G  F  C  I  V  *  S  W  I  H  V  F  L  C  I  F  L  I  C  *  W  S  K  F  T  L  *  I  S  *  Y  A  Y  S  C  F  Y  S  G  G  *  V  C  G  K  G  I  *  V  L  C  G  K  L  C  G  E  K  H  L  C  R  F  G  Y  L  G  N  G  *  F  *  C  D  S  G  H  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  K  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  G  *  L  H  F  Q  S  G  P  H  R  L  L  S  S  C  *  E  N  D  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  I  R  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  S  V  K  G  T  T  S  R  V  I  E  Q  T  L  H  *  T  K  C  I  P  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L  Q  T  T  K  Q  G  N  H  K  E  Q  V  S  S  S  S  H  *   </second_frame>
            <third_frame>   E  Q  R  Q  G  A  V  V  E  V  V  G  G  H  P  L  G  D  E  D  E  H  L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  D  F  H  P  N  L  P  *  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  H  F  L  V  C  L  Q  G  L  *  *  Q  V  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  *  Y  T  R  W  V  *  *  N  G  S  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  *  R  H  H  L  *  L  G  P  R  S  L  A  C  L  W  R  S  I  S  P  G  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  L  M  L  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  N  N  G  F  V  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  S  R  Q  R  Q  N  P  S  K  K  W  *  T  L  *  *  K  W  K  E  *  S  Q  T  T  S  P  Q  H  R  H  Q  K  G  F  E  R  E  V  S  L  M  V  L  T  L  E  D  R  V  R  E  V  T  Q  S  D  Q  F  S  L  Y  Y  R  L  *  L  G  D  H  L  K  P  V  N  T  S  T  R  G  L  *  L  T  P  E  N  V  M  D  G  E  I  E  H  I  R  K  N  C  P  R  Q  S  Y  R  P  P  I  A  R  G  R  G  G  H  G  R  G  R  H  S  G  E  R  G  G  R  G  N  G  G  H  Q  N  G  R  G  N  G  Q  T  G  A  T  T  S  Q  H  G  R  S  N  G  Q  T  N  D  R  A  H  C  Y  A  F  P  G  R  S  E  A  E  A  S  D  A  V  I  T  G  N  L  L  V  C  D  C  M  A  S  V  L  F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  N  G  L  N  L  H  C  E  F  L  D  M  P  I  R  V  S  T  P  V  G  E  S  A  V  K  V  Y  R  S  C  V  V  N  F  V  G  R  N  T  Y  V  D  L  V  I  L  A  M  D  D  F  D  V  I  L  G  M  T  W  L  S  L  Q  F  A  I  L  D  C  N  A  K  K  V  T  L  A  K  P  G  I  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  V  S  F  L  R  A  K  K  M  I  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  L  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  S  D  R  D  I  D  F  Y  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  V  L  K  A  Q  L  Q  E  L  L  N  K  R  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15924" stop="14827"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTPENVMDGEIEHIRKNCPRQSYRPPIARGRGGHGRGRHSGERGGRGNGGHQNGRGNGQTGATTSQHGRSNGQTNDRAHCYAFPGRSEAEASDAVITGNLLVCDCMASVLFDPGSTFSYVSSSFANGLNLHCEFLDMPIRVSTPVGESAVKVYRSCVVNFVGRNTYVDLVILAMDDFDVILGMTWLSLQFAILDCNAKKVTLAKPGIDPLVWEGDYTSNPVRIVSFLRAKKMISKGCLAFLAHLKDDTTQVPSIESVLVVREFLDVFPADLPGMPSDRDIDFYIDLEPGTRPISIPPYRMAPAELRVLKAQLQELLNKRFIRPSASPWGAPVLFVKKKDGSFRMCIDYRQLNKVTIKNKYPLPRID</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16951" stop="15890"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRAPSPSDTRAVTPPPTEEVIREGEDGETEQVQNEGFPPQPTLEMINQVLAYLSGLSNQGQTPPVFFAPAPQAPEVQHAATMAPRMDVPLEISTFPRLPTGPVMTSDKHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELVHKMGIVEWFGVEFVTYQFQGNSKMWWRSHIECQPIEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFRALSRYATQLCFSPQQRIRRFVKGLRSELRISALQVAATAKSFQEVVDFVIEVEGVKSDDFTTTSTSKRLRKGGEFNGSYTRGQGSGSYSVRPIQSLLQTVVGGPPQTGQHFYEGPMIDSRECYGWGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16344" e_stop="16130"/>
            <exon e_start="15393" e_stop="14879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.898"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.898">
            <gDNA_exon_boundary e_start="16344" e_stop="16130" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16129" i_stop="15394" i_length="736"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="15393" e_stop="14879" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16344" stop="16130"/>
              <exon start="15393" stop="14879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAACAACGGATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGGTCGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTT : GATGTGATTCTGGGCATGACTTGGCTTTCTCTGCAATTTGCAATCTTGGATTGTAATGCTAAAAAGGTGACGTTAGCCAAGCCTGGGATAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTTAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCATCAGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGTGTTAAAGGCACAACTTCAAGAGTTATTGAACAAACGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAG</gDNA_template>
            <first_frame> G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  L  M  L  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  N  N  G  F  V  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  S  R  Q  R  Q  N  P  S  K  K  W  *  T  L :   M  *  F  W  A  *  L  G  F  L  C  N  L  Q  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  *  T  R  *  C  G  R  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  L  R  K  *  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  *  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  I  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  C  *  R  H  N  F  K  S  Y  *  T  N  A  S  L  D  Q  V  H  P  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T  </first_frame>
            <second_frame>  E  K  G  *  V  P  E  P  R  A  R  *  D  V  G  *  C  L  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  T  T  D  S  S  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  G  R  G  N  G  K  I  L  P  R  S  G  R  L   : *  C  D  S  G  H  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  K  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  G  *  L  H  F  Q  S  G  P  H  R  L  L  S  S  C  *  E  N  D  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  I  R  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  S  V  K  G  T  T  S  R  V  I  E  Q  T  L  H  *  T  K  C  I  P  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L  Q </second_frame>
            <third_frame>   K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  Q  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  L  Q  F  A  I  L  D  C  N  A  K  K  V  T  L  A  K  P  G  I  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  V  S  F  L  R  A  K  K  M  I  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  L  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  S  D  R  D  I  D  F  Y  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  V  L  K  A  Q  L  Q  E  L  L  N  K  R  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16342" stop="16130"/>
                    <exon start="15393" stop="14881"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRDEFLSLEQGRMSVNAYEAKFRALSRYATQLCFSPQQRIRRFVKGLRSELRISALQVAATAKSFQEVVDFDVILGMTWLSLQFAILDCNAKKVTLAKPGIDPLVWEGDYTSNPVRIVSFLRAKKMISKGCLAFLAHLKDDTTQVPSIESVLVVREFLDVFPADLPGMPSDRDIDFYIDLEPGTRPISIPPYRMAPAELRVLKAQLQELLNKRFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="16979" e_stop="16107"/>
            <exon e_start="14999" e_stop="14436"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.882"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.882">
            <gDNA_exon_boundary e_start="16979" e_stop="16107" e_length="873"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16106" i_stop="15000" i_length="1107"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="14999" e_stop="14436" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16979" stop="16107"/>
              <exon start="14999" stop="14436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTGGGAGGACATCCTCTGGGGGATGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTAACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTTCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTAATCAGGGCCAGACACCCCCAGTGTTTTTTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAAGCACATTTCCTCGTCTGCCTACAGGGCCTGTAATGACAAGTGATAAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTAGTACACAAGATGGGTATAGTAGAATGGTTCGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACTCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCGTTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAACAACGGATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGGTCGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAA : AGGCACAACTTCAAGAGTTATTGAACAAACGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCTGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGACATTACGAATTTGTAGTGATGTCCTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATTTGAACCTCTTTGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAACATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCGTCTTGGGGCACGTGGTTTCTA</gDNA_template>
            <first_frame> S  W  E  D  I  L  W  G  M  R  T  S  T  *  P  I  *  Y  *  G  S  N  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  S  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  K  H  I  S  S  S  A  Y  R  A  C  N  D  K  *  *  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  S  T  Q  D  G  Y  S  R  M  V  R  C  G  V  C  D  L  S  V  S  R  E  L  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  V  L  *  L  V  Y  G  E  V  Y  P  P  D  F  E  G  *  E  K  G  *  V  P  E  P  R  A  R  *  D  V  G  *  C  L  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  T  T  D  S  S  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  G  R  G  N  G  K  I  L  P  R  S  G  R  L  C  D  R  S  G  R  S  E  :  R  H  N  F  K  S  Y  *  T  N  A  S  L  D  Q  V  H  P  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T  D  N  *  T  R  *  P  *  R  T  S  I  L  F  L  A  L  M  T  C  S  I  S  Y  K  V  L  V  S  S  L  R  L  T  *  D  L  V  I  I  N  *  K  Y  G  Q  R  M  C  Q  R  L  L  F  E  R  G  M  D  I  T  N  L  *  *  C  P  L  V  L  R  M  P  L  L  R  S  *  A  *  *  T  G  F  L  S  H  I  *  T  S  L  *  S  Y  L  L  M  I  Y  W  Y  T  Q  R  A  R  R  N  M  K  N  I  *  E  W  Y  W  K  C  *  G  R  K  S  F  M  P  S  S  L  S  V  S  F  G  *  M  Q  C  P  S  W  G  T  W  F  L </first_frame>
            <second_frame>  R  G  R  T  S  S  G  G  *  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  G  F  P  P  Q  P  T  L  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  N  Q  G  Q  T  P  P  V  F  F  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  S  T  F  P  R  L  P  T  G  P  V  M  T  S  D  K  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  V  H  K  M  G  I  V  E  W  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  S  K  M  W  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  Q  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K :   G  T  T  S  R  V  I  E  Q  T  L  H  *  T  K  C  I  P  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L  Q  T  T  K  Q  G  N  H  K  E  Q  V  S  S  S  S  H  *  *  L  V  R  S  V  T  R  C  L  C  L  L  *  D  *  L  E  I  W  L  S  S  I  E  N  T  G  N  G  C  A  K  D  C  F  S  N  E  V  W  T  L  R  I  C  S  D  V  L  W  S  Y  E  C  P  C  C  V  H  E  L  D  E  R  D  F  *  A  I  F  E  P  L  C  D  R  I  Y  *  *  Y  I  G  I  L  K  E  Q  E  G  T  *  R  T  F  E  N  G  I  G  N  V  E  G  E  K  A  L  C  Q  V  L  *  V  *  V  L  A  R  C  S  V  R  L  G  A  R  G  F   </second_frame>
            <third_frame>   V  G  G  H  P  L  G  D  E  D  E  H  L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  D  F  H  P  N  L  P  *  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  H  F  L  V  C  L  Q  G  L  *  *  Q  V  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  *  Y  T  R  W  V  *  *  N  G  S  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  *  R  H  H  L  *  L  G  P  R  S  L  A  C  L  W  R  S  I  S  P  G  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  L  M  L  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  N  N  G  F  V  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  S  R  Q  R  Q  N  P  S  K  K  W  *  T  L  *  *  K  W  K  E  *   : K  A  Q  L  Q  E  L  L  N  K  R  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  D  L  F  D  Q  L  Q  G  A  C  V  F  S  K  I  D  L  R  S  G  Y  H  Q  L  K  I  R  A  T  D  V  P  K  T  A  F  R  T  R  Y  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  A  P  A  A  F  M  S  L  M  N  G  I  F  K  P  Y  L  N  L  F  V  I  V  F  I  D  D  I  L  V  Y  S  K  S  K  K  E  H  E  E  H  L  R  M  V  L  E  M  L  R  E  K  K  L  Y  A  K  F  S  K  C  E  F  W  L  D  A  V  S  V  L  G  H  V  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16951" stop="16107"/>
                    <exon start="14999" stop="14960"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRAPSPSDTRAVTPPPTEEVIREGEDGETEQVQNEGFPPQPTLEMINQVLAYLSGLSNQGQTPPVFFAPAPQAPEVQHAATMAPRMDVPLEISTFPRLPTGPVMTSDKHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELVHKMGIVEWFGVEFVTYQFQGNSKMWWRSHIECQPIEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFRALSRYATQLCFSPQQRIRRFVKGLRSELRISALQVAATAKSFQEVVDFVIEVEGVKGTTSRVIEQTLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="15504" PGL_stop="17009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15504" e_stop="17009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="15504" e_stop="17009" e_length="1506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15504" stop="17009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCTCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCGCCACGTTCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATCTCCCCATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGTAGAAGTGTTGACCGGTTTGAGGTGGTCCCCCAACTACAGTCTGTAGTAAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGACTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCGACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGACGAATCCGTTGTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAACGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGAGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCGAACCATTCTACTATACCCATCTTGTGTACTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTTATCACTTGTCATTACAGGCCCTGTAGGCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAAAAAACACTGGGGGTGTCTGGCCCTGATTAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGAAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTTACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCATCCCCCAGAGGATGTCCTCCCACGACCTCTACCACGGCCCCTTGACGCTGTTCTT</gDNA_template>
            <first_frame> H  E  *  A  Y  Q  E  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  S  Y  H  V  V  M  *  W  P  Q  F  A  H  Y  L  C  H  F  G  D  H  H  Y  L  D  R  H  V  L  Q  N  D  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  S  P  H  P  *  H  S  L  E  S  I  I  G  P  S  *  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  K  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  S  L  F  D  V  D  V  V  V  K  S  S  D  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  C  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  R  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  E  F  P  *  N  *  *  V  T  N  S  T  P  N  H  S  T  I  P  I  L  C  T  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  L  S  L  V  I  T  G  P  V  G  R  R  G  N  V  L  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  A  G  A  K  N  T  G  G  V  W  P  *  L  D  N  P  L  R  *  A  R  T  *  L  I  I  S  R  V  G  W  G  G  N  P  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  H  P  P  E  D  V  L  P  R  P  L  P  R  P  L  D  A  V  L </first_frame>
            <second_frame>  T  N  R  H  I  K  K  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  P  S  L  P  I  T  S  A  I  L  V  T  T  I  T  S  T  A  T  F  S  R  M  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  F  N  L  P  I  H  N  I  L  W  S  Q  S  *  A  P  R  R  S  V  D  R  F  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  N  H  *  T  H  L  P  F  E  A  F  L  M  S  M  L  W  *  S  R  L  T  S  L  L  P  L  L  S  Q  S  L  P  L  L  G  R  I  L  P  L  P  R  P  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  D  E  S  V  V  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  G  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  T  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  S  S  L  E  T  D  K  S  Q  T  P  H  R  T  I  L  L  Y  P  S  C  V  L  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  Y  H  L  S  L  Q  A  L  *  A  D  E  E  M  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  G  V  S  G  P  D  *  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  E  I  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  L  L  P  *  Y  Q  M  G  *  V  L  V  L  I  P  Q  R  M  S  S  H  D  L  Y  H  G  P  L  T  L  F   </second_frame>
            <third_frame>   R  I  G  I  S  R  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  L  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  P  L  P  R  P  P  R  S  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  S  I  S  P  S  I  T  F  S  G  V  N  H  R  P  L  V  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  C  G  E  V  V  *  L  H  S  F  H  F  Y  H  K  V  Y  H  F  L  E  G  F  C  R  C  R  D  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  T  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  R  G  P  S  H  R  W  C  L  Y  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  E  P  F  Y  Y  T  H  L  V  Y  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  T  C  H  Y  R  P  C  R  Q  T  R  K  C  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  K  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  *  G  R  L  G  W  K  S  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  Y  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  C  P  P  T  T  S  T  T  A  P  *  R  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16532" stop="16786"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIISILRFSTLEDWRFQFQELTEKFMLITCHYRPCRQTRKCAYFQWNIHAGSHSSRMLYLRSLRCWCKKHWGCLALIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16812" stop="17009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISRVGWGGNPSFCTCSVSPSSPSLITSSVGGGVTALVSDGLGARPHPPEDVLPRPLPRPLDAVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15733" stop="15930"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGPSLPITSAILVTTITSTATFSRMTASTMTTSTSSYWGSITLSGTIFPNMFNLPIHNILWSQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16041" stop="16235"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRSLFDVDVVVKSSDFTPSTSITKSTTSWKDFAVAATCKAEIRNSDLNPFTNRRIRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="17017" PGL_stop="38565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17017" e_stop="17817"/>
            <exon e_start="37073" e_stop="37217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.787" acc_prob="0.000" e_score="0.924"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="17017" e_stop="17817" e_length="801"/>
          </exon>
          <intron i_serial="1" don_prob="0.787" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17818" i_stop="37072" i_length="19255"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="37073" e_stop="37217" e_length="145"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17017" stop="17817"/>
              <exon start="37073" stop="37217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580377" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACAGCCCCAGTGGCTGGCTCAGTTGTTTCTTGTCTGGCCGGTGTTGGTGTTGACGTAGTCGTTGCTCTAGTTCTAACCATCTGCGAAAGAGAGTGAAGATGGTCAGATACCAATTCGTATCACCTAGATACCAATTGGACTCAAGTAGTAGCACGAAAGAAAGTATGAAAGAGTGAAATTTTTTCCTAAAGTCTTATAGCCTCTCAAGGAAAAGTAAAGGCGTCCCCCTACCGTTCCCTAAGACTCTACTAGACCTATTCTTGTGTGATGAGACCAATGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAACCGGGTTGCGATTGGCACCCACACTTACCCTCCTATGTGAGCGAACAAACCAATCTAAACCTTAACATTTAAATATAATATAAACAGAAAGTAATGCGGAAGACTTAAACTCATAAATAATCAACTTCTATAACTCAAAAACTTATCACTATCCCCAGAATCTGGAAGTCATCATCACAAGAACATCTACCTTTAAATTACTAAACTAAGAGTATCTAAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGGAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAGATCCGGTGTGGTGAAGACTGGCTTGAGTTACTGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATAACAAGAAGAAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGACCAACTCAAAATAGGGAACA : GTATGTATTAAGAAATATCATAAAATCAACTAATAACCTTAGCATGCAGCATTTACAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTCATTTGGGAATTTAGTTCATTAG</gDNA_template>
            <first_frame> Q  Q  P  Q  W  L  A  Q  L  F  L  V  W  P  V  L  V  L  T  *  S  L  L  *  F  *  P  S  A  K  E  S  E  D  G  Q  I  P  I  R  I  T  *  I  P  I  G  L  K  *  *  H  E  R  K  Y  E  R  V  K  F  F  P  K  V  L  *  P  L  K  E  K  *  R  R  P  P  T  V  P  *  D  S  T  R  P  I  L  V  *  *  D  Q  *  T  *  C  S  D  T  K  F  V  T  T  Q  T  G  L  R  L  A  P  T  L  T  L  L  C  E  R  T  N  Q  S  K  P  *  H  L  N  I  I  *  T  E  S  N  A  E  D  L  N  S  *  I  I  N  F  Y  N  S  K  T  Y  H  Y  P  Q  N  L  E  V  I  I  T  R  T  S  T  F  K  L  L  N  *  E  Y  L  K  S  *  K  Y  I  R  S  *  S  M  P  E  V  Q  G  I  K  T  *  R  R  R  S  S  P  S  *  K  H  *  L  T  L  K  I  R  C  G  E  D  W  L  E  L  L  L  S  R  R  *  R  H  V  C  C  T  P  Q  I  T  R  R  K  T  *  K  *  G  S  V  Q  N  T  G  T  E  *  I  S  S  T  N  S  K  *  G  T  :  V  C  I  K  K  Y  H  K  I  N  *  *  P  *  H  A  A  F  T  V  T  I  T  L  G  Y  N  T  K  H  I  N  E  D  S  H  L  L  I  I  L  I  W  E  F  S  S  L  </first_frame>
            <second_frame>  N  S  P  S  G  W  L  S  C  F  L  S  G  R  C  W  C  *  R  S  R  C  S  S  S  N  H  L  R  K  R  V  K  M  V  R  Y  Q  F  V  S  P  R  Y  Q  L  D  S  S  S  S  T  K  E  S  M  K  E  *  N  F  F  L  K  S  Y  S  L  S  R  K  S  K  G  V  P  L  P  F  P  K  T  L  L  D  L  F  L  C  D  E  T  N  E  P  N  A  L  I  P  S  L  S  R  P  K  P  G  C  D  W  H  P  H  L  P  S  Y  V  S  E  Q  T  N  L  N  L  N  I  *  I  *  Y  K  Q  K  V  M  R  K  T  *  T  H  K  *  S  T  S  I  T  Q  K  L  I  T  I  P  R  I  W  K  S  S  S  Q  E  H  L  P  L  N  Y  *  T  K  S  I  *  K  A  K  N  T  *  E  A  S  P  C  R  K  F  K  A  S  R  H  E  G  E  D  P  V  Q  A  R  S  I  S  S  P  *  R  S  G  V  V  K  T  G  L  S  Y  C  *  V  E  D  D  G  T  F  A  A  L  H  K  *  Q  E  E  K  H  K  S  R  G  Q  Y  K  T  R  V  L  S  R  Y  H  R  P  T  Q  N  R  E  Q :   Y  V  L  R  N  I  I  K  S  T  N  N  L  S  M  Q  H  L  Q  L  P  *  P  L  V  T  T  P  S  T  S  M  R  T  H  T  S  S  S  Y  S  F  G  N  L  V  H  * </second_frame>
            <third_frame>   T  A  P  V  A  G  S  V  V  S  C  L  A  G  V  G  V  D  V  V  V  A  L  V  L  T  I  C  E  R  E  *  R  W  S  D  T  N  S  Y  H  L  D  T  N  W  T  Q  V  V  A  R  K  K  V  *  K  S  E  I  F  S  *  S  L  I  A  S  Q  G  K  V  K  A  S  P  Y  R  S  L  R  L  Y  *  T  Y  S  C  V  M  R  P  M  N  L  M  L  *  Y  Q  V  C  H  D  P  N  R  V  A  I  G  T  H  T  Y  P  P  M  *  A  N  K  P  I  *  T  L  T  F  K  Y  N  I  N  R  K  *  C  G  R  L  K  L  I  N  N  Q  L  L  *  L  K  N  L  S  L  S  P  E  S  G  S  H  H  H  K  N  I  Y  L  *  I  T  K  L  R  V  S  K  K  L  K  I  H  K  K  L  V  H  A  G  S  S  R  H  Q  D  M  K  E  K  I  Q  S  K  L  E  A  L  A  H  P  E  D  P  V  W  *  R  L  A  *  V  T  V  E  S  K  M  T  A  R  L  L  H  S  T  N  N  K  K  K  N  I  K  V  G  V  S  T  K  H  G  Y  *  V  D  I  I  D  Q  L  K  I  G  N   : S  M  Y  *  E  I  S  *  N  Q  L  I  T  L  A  C  S  I  Y  S  Y  H  N  P  W  L  Q  H  Q  A  H  Q  *  G  L  T  P  P  H  H  T  H  L  G  I  *  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17195" stop="17407"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFLKSYSLSRKSKGVPLPFPKTLLDLFLCDETNEPNALIPSLSRPKPGCDWHPHLPSYVSEQTNLNLNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30039" e_stop="30184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="30039" e_stop="30184" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30039" stop="30184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATA</gDNA_template>
            <first_frame> Y  C  K  P  Y  Y  M  L  N  G  M  F  A  *  I  *  L  C  D  C  D  K  I  S  M  M  K  I  L  N  P  K  S  *  K  E  T  L  I  Y  I  I  N  D  D  A  L  V   </first_frame>
            <second_frame>  I  V  N  P  T  I  C  L  M  V  C  L  H  E  Y  D  Y  V  I  V  I  R  *  A  *  *  K  Y  *  I  P  N  L  E  K  K  L  *  Y  T  L  L  M  M  M  P  W  Y  </second_frame>
            <third_frame>   L  *  T  L  L  Y  A  *  W  Y  V  C  M  N  M  I  M  *  L  *  *  D  K  H  D  E  N  I  E  S  Q  I  L  K  R  N  F  N  I  H  Y  *  *  *  C  L  G  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0032G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="29474" e_stop="29863"/>
            <exon e_start="38442" e_stop="38565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.913"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="29474" e_stop="29863" e_length="390"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29864" i_stop="38441" i_length="8578"/>
          </intron>
          <exon e_serial="2" e_score="0.935">
            <gDNA_exon_boundary e_start="38442" e_stop="38565" e_length="124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29474" stop="29863"/>
              <exon start="38442" stop="38565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAAACACTTAGAAAATATGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCATGACGGAATGGCACGACGGACCGTCACAGGCGTGACGGACCGTCACGGAGACTTTAGTGAAAATCTATTCTCTGAACTTTGCGACGACCTGCAGAACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCACAAATCCAAGGCAAAATCGGATTTCCTTACACGTTTTAGGGACGTTTTTGGACTATTCCTTCCTTAATTATAGATTTTGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGG : GTTTTGAAACGAGACCCTGCGACGCTCCGTCGTGCCCTTGACGGTCCATCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACAGGTCGTTACA</gDNA_template>
            <first_frame> S  K  H  L  E  N  M  K  L  G  T  E  N  R  L  S  E  L  H  D  G  M  A  R  R  T  V  T  G  V  T  D  R  H  G  D  F  S  E  N  L  F  S  E  L  C  D  D  L  Q  N  G  P  S  Q  A  R  R  P  V  T  G  C  T  N  P  R  Q  N  R  I  S  L  H  V  L  G  T  F  L  D  Y  S  F  L  N  Y  R  F  C  G  F  I  L  I  T  Q  I  L  G  G  *  K  R  *  P  *  V  N  *  W  G  I  I  A  I  F  Y  S  *  L  Y  T  N  *  G  K  R  K  R  :  V  L  K  R  D  P  A  T  L  R  R  A  L  D  G  P  S  W  G  P  S  L  L  P  V  F  P  E  L  K  S  V  A  Q  N  D  *  T  G  R  Y  </first_frame>
            <second_frame>  Q  N  T  *  K  I  *  N  W  V  L  K  I  D  S  L  N  F  M  T  E  W  H  D  G  P  S  Q  A  *  R  T  V  T  E  T  L  V  K  I  Y  S  L  N  F  A  T  T  C  R  T  D  R  R  R  H  D  G  P  S  Q  V  A  Q  I  Q  G  K  I  G  F  P  Y  T  F  *  G  R  F  W  T  I  P  S  L  I  I  D  F  V  G  L  Y  *  *  L  K  F  L  G  V  K  R  G  N  P  K  L  I  S  G  V  L  L  P  S  F  I  L  N  Y  I  L  I  R  V  K  E  R  G :   F  *  N  E  T  L  R  R  S  V  V  P  L  T  V  H  R  G  V  R  R  F  C  Q  F  F  Q  N  *  S  L  L  L  K  T  T  K  Q  V  V  T </second_frame>
            <third_frame>   K  T  L  R  K  Y  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  T  T  D  R  H  R  R  D  G  P  S  R  R  L  *  *  K  S  I  L  *  T  L  R  R  P  A  E  R  T  V  A  G  T  T  A  R  H  R  L  H  K  S  K  A  K  S  D  F  L  T  R  F  R  D  V  F  G  L  F  L  P  *  L  *  I  L  W  V  Y  I  N  N  S  N  S  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  L  L  F  L  I  I  Y  *  L  G  *  K  K  E   : G  F  E  T  R  P  C  D  A  P  S  C  P  *  R  S  I  V  G  S  V  A  S  A  S  F  S  R  I  E  V  C  C  S  K  R  L  N  R  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29474" stop="29779"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKHLENMKLGTENRLSELHDGMARRTVTGVTDRHGDFSENLFSELCDDLQNGPSQARRPVTGCTNPRQNRISLHVLGTFLDYSFLNYRFCGFILITQILGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39224" PGL_stop="39400"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39224" e_stop="39400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="39224" e_stop="39400" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39224" stop="39400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGGTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  G  K  G  R  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  V  R  V  G  S  Y  P  N  D  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  P  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0032G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="39439" PGL_stop="39931"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39439" e_stop="39931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="39439" e_stop="39931" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39439" stop="39931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCCAATTCCGCCTGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAATCGCACCACTTCCGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCATCGTTTTTGGAAGACCAACCACGAAGTCCATTGCGATCCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAAAGTCAACAACATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGATACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGT</gDNA_template>
            <first_frame> S  Q  F  R  L  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  *  W  N  P  M  Q  S  H  H  F  R  D  V  K  F  G  *  L  L  C  I  V  S  H  L  N  R  N  K  M  S  R  L  S  *  P  I  N  N  H  P  N  G  V  I  L  T  H  R  F  W  K  T  N  H  E  V  H  C  D  P  L  P  F  P  F  R  N  G  H  S  L  K  C  S  S  G  P  L  V  F  I  L  Y  L  L  T  V  W  T  L  G  N  K  V  N  N  I  T  L  H  S  T  P  P  K  V  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  Q  N  S  V  D  Q  I  I  D  A  G  </first_frame>
            <second_frame>  P  N  S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  D  S  G  T  P  C  N  R  T  T  S  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  I  K  *  A  D  L  V  N  L  S  T  I  T  Q  M  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  L  A  I  K  S  T  T  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  L  I  K  S  S  T  R  G </second_frame>
            <third_frame>   P  I  P  P  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  I  V  E  P  H  A  I  A  P  L  P  R  C  K  V  W  L  T  S  L  H  C  K  S  P  *  P  E  *  N  E  Q  T  *  L  T  Y  Q  Q  S  P  K  W  S  H  T  Y  P  S  F  L  E  D  Q  P  R  S  P  L  R  S  S  P  I  S  I  P  E  W  A  F  S  E  V  F  L  R  A  F  G  V  H  T  L  L  V  D  S  L  D  T  W  Q  *  S  Q  Q  H  H  A  S  F  Y  S  T  K  S  V  A  L  G  H  D  T  S  W  L  H  P  D  V  *  N  T  L  N  Y  E  P  L  S  E  *  C  *  S  N  H  R  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39613" stop="39837"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNHPNGVILTHRFWKTNHEVHCDPLPFPFRNGHSLKCSSGPLVFILYLLTVWTLGNKVNNITLHSTPPKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="44500" PGL_stop="43827"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44500" e_stop="44239"/>
            <exon e_start="44084" e_stop="43827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.954"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="44500" e_stop="44239" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44238" i_stop="44085" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="44084" e_stop="43827" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44500" stop="44239"/>
              <exon start="44084" stop="43827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593741" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCCTAATCTACTTTGTTAGTGATGATGCCTTGGTATAAAAGAAGGCTTGGTGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCATGATAGAATATGGATCGGGTGCCACGTTCTGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATG : GATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTATAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTAAGATATTGCTTAATACATACT</gDNA_template>
            <first_frame> K  P  *  S  T  L  L  V  M  M  P  W  Y  K  R  R  L  G  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  M  I  E  Y  G  S  G  A  T  F  W  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  V  Y   : G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  L  I  Y  P  I  *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  I  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  K  I  L  L  N  T  Y  </first_frame>
            <second_frame>  N  P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  V  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  *  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  :  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  I  C  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  R  Y  C  L  I  H  T </second_frame>
            <third_frame>   T  L  I  Y  F  V  S  D  D  A  L  V  *  K  K  A  W  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  H  D  R  I  W  I  G  C  H  V  L  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  W :   I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  V  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  Y  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  *  D  I  A  *  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0032G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="44795" PGL_stop="45047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44795" e_stop="45047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="44795" e_stop="45047" e_length="253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44795" stop="45047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCAAACCCTCTTTCTTTTACCCTAATAAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGAATTTGAGTTATTAATATAAACCCACGAAATATAAAATTATAGCAGGAATAGTCCAAAACGCCCCTTTAAAACTTAACCAGGAATCTGACTCCAACCGGGATTACGCAAGCTGTGACGGGCCGTCGCGCCTGCGACGGTCCGTCCTGCT</gDNA_template>
            <first_frame> I  Q  T  L  F  L  L  P  *  *  V  Y  N  *  E  *  K  M  A  I  I  P  H  *  L  T  *  G  Y  L  F  *  P  P  R  I  *  V  I  N  I  N  P  R  N  I  K  L  *  Q  E  *  S  K  T  P  L  *  N  L  T  R  N  L  T  P  T  G  I  T  Q  A  V  T  G  R  R  A  C  D  G  P  S  C  </first_frame>
            <second_frame>  F  K  P  S  F  F  Y  P  N  K  Y  I  I  K  N  K  R  W  Q  *  Y  P  T  N  *  L  K  V  T  S  F  N  P  Q  E  F  E  L  L  I  *  T  H  E  I  *  N  Y  S  R  N  S  P  K  R  P  F  K  T  *  P  G  I  *  L  Q  P  G  L  R  K  L  *  R  A  V  A  P  A  T  V  R  P  A </second_frame>
            <third_frame>   S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  T  P  L  I  N  L  R  L  P  L  L  T  P  K  N  L  S  Y  *  Y  K  P  T  K  Y  K  I  I  A  G  I  V  Q  N  A  P  L  K  L  N  Q  E  S  D  S  N  R  D  Y  A  S  C  D  G  P  S  R  L  R  R  S  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0032G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="90797" PGL_stop="100607"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90856" e_stop="91018"/>
            <exon e_start="91260" e_stop="91422"/>
            <exon e_start="91652" e_stop="91943"/>
            <exon e_start="92141" e_stop="92241"/>
            <exon e_start="93422" e_stop="93608"/>
            <exon e_start="93709" e_stop="93818"/>
            <exon e_start="98735" e_stop="98825"/>
            <exon e_start="99337" e_stop="99502"/>
            <exon e_start="99842" e_stop="99960"/>
            <exon e_start="100117" e_stop="100607"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.855" e_score="0.975"/>
          <exon-intron don_prob="0.925" acc_prob="0.801" e_score="0.982"/>
          <exon-intron don_prob="0.958" acc_prob="0.993" e_score="0.997"/>
          <exon-intron don_prob="0.500" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.903" e_score="0.995"/>
          <exon-intron don_prob="0.968" acc_prob="0.962" e_score="0.991"/>
          <exon-intron don_prob="0.995" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="1.000" e_score="0.952"/>
          <exon-intron don_prob="0.997" acc_prob="0.690" e_score="0.983"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="90856" e_stop="91018" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.855">
            <gDNA_intron_boundary i_start="91019" i_stop="91259" i_length="241"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="91260" e_stop="91422" e_length="163"/>
          </exon>
          <intron i_serial="2" don_prob="0.925" acc_prob="0.801">
            <gDNA_intron_boundary i_start="91423" i_stop="91651" i_length="229"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="91652" e_stop="91943" e_length="292"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.993">
            <gDNA_intron_boundary i_start="91944" i_stop="92140" i_length="197"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92141" e_stop="92241" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.500" acc_prob="0.971">
            <gDNA_intron_boundary i_start="92242" i_stop="93421" i_length="1180"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="93422" e_stop="93608" e_length="187"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.903">
            <gDNA_intron_boundary i_start="93609" i_stop="93708" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="93709" e_stop="93818" e_length="110"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.962">
            <gDNA_intron_boundary i_start="93819" i_stop="98734" i_length="4916"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98735" e_stop="98825" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.965">
            <gDNA_intron_boundary i_start="98826" i_stop="99336" i_length="511"/>
          </intron>
          <exon e_serial="8" e_score="0.952">
            <gDNA_exon_boundary e_start="99337" e_stop="99502" e_length="166"/>
          </exon>
          <intron i_serial="8" don_prob="0.947" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99503" i_stop="99841" i_length="339"/>
          </intron>
          <exon e_serial="9" e_score="0.983">
            <gDNA_exon_boundary e_start="99842" e_stop="99960" e_length="119"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.690">
            <gDNA_intron_boundary i_start="99961" i_stop="100116" i_length="156"/>
          </intron>
          <exon e_serial="10" e_score="0.971">
            <gDNA_exon_boundary e_start="100117" e_stop="100607" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90856" stop="91018"/>
              <exon start="91260" stop="91422"/>
              <exon start="91652" stop="91943"/>
              <exon start="92141" stop="92241"/>
              <exon start="93422" stop="93608"/>
              <exon start="93709" stop="93818"/>
              <exon start="98735" stop="98825"/>
              <exon start="99337" stop="99457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93791" stop="93818"/>
              <exon start="98735" stop="98825"/>
              <exon start="99337" stop="99502"/>
              <exon start="99842" stop="99960"/>
              <exon start="100117" stop="100607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564354" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGTACACTAGTATAGGGCAATGGATTATCCCTTGGAAATCCAAATAAGCACCAAAATTTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAG : AATATAGTCCGTACAGGATACTGACAAATAGTTGGGGTTTAAGACATAAGCACCAAAAATTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGGCTTGATAATCAGTAAAG : AATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAG : AAAACTGGACCTTTTTTGTACTTTGCAAATGGAAGGGAAGTTGTGGGTAATGTTACTTCTCTTTCCAAAGTCATATGTGTGCACAGTAAGTGCATTGAATG : GACACCTCAAGTATATTATGAAGGAGAAATTATAAAAAATTTGGACACCGAGTTGGCAAGAGCTACAAAACTCAAGTGTAGTAGTTGTGGCATGAAGGGTGCAGCACTTGGCTGCTACATGACGTCTTGCAGGAGGAGTTATCATGTGCCCTGTGCATTTGAAATCCAGGATTGCCAATGGGATATG : GAGAACTATGTGATGCTGTGCCCAGTCCATAAATCTGTTAAATTTCCAAGTGAGAAGTCAAAGTCTATAGAACATATCAAGAGGGAAATGCATCCAAAGGCTTCTCCCCT : AACCACCGAGCAATTGACTTTTTGGGCAAGATCATCAGATGGACCAAAAGAATGGGTTCTTTGTGGGTCTGCTCTATCCTCAGAAGATAAG : TATATGTTGGTGAAATTTGCTGGTATGTGTGGTGCAACTGTGTGCAAGTTCTGGAAACCAAATGTCACACATGTTGTTGCAACAACTGATGTAAAGGGTGCATGCACCAGAACAATGAAAGTTCTCATGGCGATTTTGAGTGGAAAATGGATCGTAACTATGGACT : GGGTAAAAGCTTGTGTTGCAGCAAATGGTCCAGTAAATGAAGAACTTTATGAAATAAGTCTAGACAATTATGGCCGTTCTGGGGGCCCCAAAGCTGGAAGGTTGATGGCCTCAACTAAT : GGGCCAAAGCTTTTTGATGGTTTCGAGTTTTATTTTATTGGAGATTTTATGCCAGATTACAAAAGTGACCTGTTAGATCTAGTCGAGAAGGCTGGAGGCACTGTCATTCACAGTGAGGAGCAGTTGGTGAAACAGAATCATGCTGCACAGGAAACTCAGCCATCTTCTCTAGTCGTATATAACTGTGATCTATCGCAAGGTTGCTTTGAAGAAAAAATCAGAATTTTGCTGCAAAGATTAGCAGAAGCTGAGGATCTAGCCGAGCAAATGGGTTCTCAGACCGTTCAGCATACTTGGATTCTGGAATCTATTGCTGCATGTAAATTGGTACCTTTCTGCTGATGAGTGATCGCAACAAGTTTTTTGTGCAACTGAAATACTTCCACTTGTGGCAGAAGAACAAAAGTAGTTGTACATTTTCTGCACCTGGGAAATATAGTTGAATCTTAAATGCTAAATTTTGTGTATAAATGTGAAAGAGATATTACAAC</gDNA_template>
            <first_frame> F  V  H  *  Y  R  A  M  D  Y  P  L  E  I  Q  I  S  T  K  I  F  I  H  I  F  C  G  V  I  S  S  R  F  L  *  L  Q  I  I  W  K  Q  E  K  T  S  L  F  A  L  T  I  S  K   : E  Y  S  P  Y  R  I  L  T  N  S  W  G  L  R  H  K  H  Q  K  F  Y  S  Y  I  L  W  R  Y  Q  F  K  I  F  I  A  S  N  H  L  E  A  R  E  N  L  T  F  W  L  D  N  Q  *  R :   I  *  S  V  Q  D  T  D  K  *  L  G  V  *  D  I  F  H  E  M  D  I  K  Q  Q  K  K  L  N  S  G  L  S  E  M  S  L  E  S  H  D  H  I  L  Q  R  C  P  S  S  E  I  V  A  D  S  N  C  N  L  E  Y  K  I  C  E  S  P  N  V  V  Q  P  K  A  V  I  D  Q  H  P  P  K  A  S  V  C  A  F  C  Y  S  A  K  T  T  E  :  K  T  G  P  F  L  Y  F  A  N  G  R  E  V  V  G  N  V  T  S  L  S  K  V  I  C  V  H  S  K  C  I  E  W :   T  P  Q  V  Y  Y  E  G  E  I  I  K  N  L  D  T  E  L  A  R  A  T  K  L  K  C  S  S  C  G  M  K  G  A  A  L  G  C  Y  M  T  S  C  R  R  S  Y  H  V  P  C  A  F  E  I  Q  D  C  Q  W  D  M  :  E  N  Y  V  M  L  C  P  V  H  K  S  V  K  F  P  S  E  K  S  K  S  I  E  H  I  K  R  E  M  H  P  K  A  S  P  L :   T  T  E  Q  L  T  F  W  A  R  S  S  D  G  P  K  E  W  V  L  C  G  S  A  L  S  S  E  D  K  :  Y  M  L  V  K  F  A  G  M  C  G  A  T  V  C  K  F  W  K  P  N  V  T  H  V  V  A  T  T  D  V  K  G  A  C  T  R  T  M  K  V  L  M  A  I  L  S  G  K  W  I  V  T  M  D   : W  V  K  A  C  V  A  A  N  G  P  V  N  E  E  L  Y  E  I  S  L  D  N  Y  G  R  S  G  G  P  K  A  G  R  L  M  A  S  T  N  :  G  P  K  L  F  D  G  F  E  F  Y  F  I  G  D  F  M  P  D  Y  K  S  D  L  L  D  L  V  E  K  A  G  G  T  V  I  H  S  E  E  Q  L  V  K  Q  N  H  A  A  Q  E  T  Q  P  S  S  L  V  V  Y  N  C  D  L  S  Q  G  C  F  E  E  K  I  R  I  L  L  Q  R  L  A  E  A  E  D  L  A  E  Q  M  G  S  Q  T  V  Q  H  T  W  I  L  E  S  I  A  A  C  K  L  V  P  F  C  *  *  V  I  A  T  S  F  L  C  N  *  N  T  S  T  C  G  R  R  T  K  V  V  V  H  F  L  H  L  G  N  I  V  E  S  *  M  L  N  F  V  Y  K  C  E  R  D  I  T   </first_frame>
            <second_frame>  S  Y  T  S  I  G  Q  W  I  I  P  W  K  S  K  *  A  P  K  F  L  F  I  Y  S  V  A  L  S  V  Q  D  F  Y  S  F  K  S  S  G  S  K  R  K  P  H  F  L  P  *  Q  S  V  K  :  N  I  V  R  T  G  Y  *  Q  I  V  G  V  *  D  I  S  T  K  N  F  I  H  I  F  C  G  V  I  S  S  R  F  L  *  L  Q  I  I  W  K  Q  E  K  T  S  L  F  G  L  I  I  S  K   : E  Y  S  Q  Y  R  I  L  T  N  S  W  G  F  K  T  Y  F  M  K  W  I  L  S  S  K  R  N  *  T  L  V  C  Q  K  *  A  *  K  V  M  I  I  F  S  K  D  A  L  V  L  K  L  L  L  I  P  T  A  I  W  S  I  K  Y  V  N  L  L  M  L  F  S  Q  K  Q  L  *  I  N  I  L  R  K  Q  V  F  V  L  S  V  I  L  L  R  P  Q  R :   K  L  D  L  F  C  T  L  Q  M  E  G  K  L  W  V  M  L  L  L  F  P  K  S  Y  V  C  T  V  S  A  L  N   : G  H  L  K  Y  I  M  K  E  K  L  *  K  I  W  T  P  S  W  Q  E  L  Q  N  S  S  V  V  V  V  A  *  R  V  Q  H  L  A  A  T  *  R  L  A  G  G  V  I  M  C  P  V  H  L  K  S  R  I  A  N  G  I  W :   R  T  M  *  C  C  A  Q  S  I  N  L  L  N  F  Q  V  R  S  Q  S  L  *  N  I  S  R  G  K  C  I  Q  R  L  L  P   : *  P  P  S  N  *  L  F  G  Q  D  H  Q  M  D  Q  K  N  G  F  F  V  G  L  L  Y  P  Q  K  I  S :   I  C  W  *  N  L  L  V  C  V  V  Q  L  C  A  S  S  G  N  Q  M  S  H  M  L  L  Q  Q  L  M  *  R  V  H  A  P  E  Q  *  K  F  S  W  R  F  *  V  E  N  G  S  *  L  W  T  :  G  *  K  L  V  L  Q  Q  M  V  Q  *  M  K  N  F  M  K  *  V  *  T  I  M  A  V  L  G  A  P  K  L  E  G  *  W  P  Q  L  M :   G  Q  S  F  L  M  V  S  S  F  I  L  L  E  I  L  C  Q  I  T  K  V  T  C  *  I  *  S  R  R  L  E  A  L  S  F  T  V  R  S  S  W  *  N  R  I  M  L  H  R  K  L  S  H  L  L  *  S  Y  I  T  V  I  Y  R  K  V  A  L  K  K  K  S  E  F  C  C  K  D  *  Q  K  L  R  I  *  P  S  K  W  V  L  R  P  F  S  I  L  G  F  W  N  L  L  L  H  V  N  W  Y  L  S  A  D  E  *  S  Q  Q  V  F  C  A  T  E  I  L  P  L  V  A  E  E  Q  K  *  L  Y  I  F  C  T  W  E  I  *  L  N  L  K  C  *  I  L  C  I  N  V  K  E  I  L  Q  </second_frame>
            <third_frame>   R  T  L  V  *  G  N  G  L  S  L  G  N  P  N  K  H  Q  N  F  Y  S  Y  I  L  W  R  Y  Q  F  K  I  F  I  A  S  N  H  L  E  A  R  E  N  L  T  F  C  L  D  N  Q  *  R :   I  *  S  V  Q  D  T  D  K  *  L  G  F  K  T  *  A  P  K  I  L  F  I  Y  S  V  A  L  S  V  Q  D  F  Y  S  F  K  S  S  G  S  K  R  K  P  H  F  L  A  *  *  S  V  K  :  N  I  V  S  T  G  Y  *  Q  I  V  G  G  L  R  H  I  S  *  N  G  Y  *  A  A  K  E  T  K  L  W  F  V  R  N  E  L  R  K  S  *  S  Y  S  P  K  M  P  *  F  *  N  C  C  *  F  Q  L  Q  F  G  V  *  N  M  *  I  S  *  C  C  S  A  K  S  S  Y  R  S  T  S  S  E  S  K  C  L  C  F  L  L  F  C  *  D  H  R   : E  N  W  T  F  F  V  L  C  K  W  K  G  S  C  G  *  C  Y  F  S  F  Q  S  H  M  C  A  Q  *  V  H  *  M  :  D  T  S  S  I  L  *  R  R  N  Y  K  K  F  G  H  R  V  G  K  S  Y  K  T  Q  V  *  *  L  W  H  E  G  C  S  T  W  L  L  H  D  V  L  Q  E  E  L  S  C  A  L  C  I  *  N  P  G  L  P  M  G  Y   : G  E  L  C  D  A  V  P  S  P  *  I  C  *  I  S  K  *  E  V  K  V  Y  R  T  Y  Q  E  G  N  A  S  K  G  F  S  P  :  N  H  R  A  I  D  F  L  G  K  I  I  R  W  T  K  R  M  G  S  L  W  V  C  S  I  L  R  R  *   : V  Y  V  G  E  I  C  W  Y  V  W  C  N  C  V  Q  V  L  E  T  K  C  H  T  C  C  C  N  N  *  C  K  G  C  M  H  Q  N  N  E  S  S  H  G  D  F  E  W  K  M  D  R  N  Y  G  L :   G  K  S  L  C  C  S  K  W  S  S  K  *  R  T  L  *  N  K  S  R  Q  L  W  P  F  W  G  P  Q  S  W  K  V  D  G  L  N  *   : W  A  K  A  F  *  W  F  R  V  L  F  Y  W  R  F  Y  A  R  L  Q  K  *  P  V  R  S  S  R  E  G  W  R  H  C  H  S  Q  *  G  A  V  G  E  T  E  S  C  C  T  G  N  S  A  I  F  S  S  R  I  *  L  *  S  I  A  R  L  L  *  R  K  N  Q  N  F  A  A  K  I  S  R  S  *  G  S  S  R  A  N  G  F  S  D  R  S  A  Y  L  D  S  G  I  Y  C  C  M  *  I  G  T  F  L  L  M  S  D  R  N  K  F  F  V  Q  L  K  Y  F  H  L  W  Q  K  N  K  S  S  C  T  F  S  A  P  G  K  Y  S  *  I  L  N  A  K  F  C  V  *  M  *  K  R  Y  Y  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91695" stop="91943"/>
                    <exon start="92141" stop="92241"/>
                    <exon start="93422" stop="93608"/>
                    <exon start="93709" stop="93818"/>
                    <exon start="98735" stop="98825"/>
                    <exon start="99337" stop="99502"/>
                    <exon start="99842" stop="99960"/>
                    <exon start="100117" stop="100458"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1362</number_coding_nucleotides>
                  <number_encoded_amino_acids>454</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIFHEMDIKQQKKLNSGLSEMSLESHDHILQRCPSSEIVADSNCNLEYKICESPNVVQPKAVIDQHPPKASVCAFCYSAKTTEKTGPFLYFANGREVVGNVTSLSKVICVHSKCIEWTPQVYYEGEIIKNLDTELARATKLKCSSCGMKGAALGCYMTSCRRSYHVPCAFEIQDCQWDMENYVMLCPVHKSVKFPSEKSKSIEHIKREMHPKASPLTTEQLTFWARSSDGPKEWVLCGSALSSEDKYMLVKFAGMCGATVCKFWKPNVTHVVATTDVKGACTRTMKVLMAILSGKWIVTMDWVKACVAANGPVNEELYEISLDNYGRSGGPKAGRLMASTNGPKLFDGFEFYFIGDFMPDYKSDLLDLVEKAGGTVIHSEEQLVKQNHAAQETQPSSLVVYNCDLSQGCFEEKIRILLQRLAEAEDLAEQMGSQTVQHTWILESIAACKLVPFC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90961" stop="91018"/>
                    <exon start="91260" stop="91420"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQIIWKQEKTSLFALTISKEYSPYRILTNSWGLRHKHQKFYSYILWRYQFKIFIASNHLEARENLTFWLDNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="91388" e_stop="92172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="91388" e_stop="92172" e_length="785"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91388" stop="92172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564355" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAACCTCACTTTTTGGCTTGATAATCAGTAAAGGTAAGAAACCATCGTTTTTTCAAACAAAGAAGGAGTTTAGTAGGACGAATCAAGGGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTAAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGAATTTTTTTTTTTGAAGCTTTACACAAATTTGATCCTCTCTTTCCAGAATATAGTCAGTACAGGATACTGACAAATAGTTGGGGGTTTAAGACATATTTCATGAAATGGATATTAAGCAGCAAAAGAAACTAAACTCTGGTTTGTCAGAAATGAGCTTAGAAAGTCATGATCATATTCTCCAAAGATGCCCTAGTTCTGAAATTGTTGCTGATTCCAACTGCAATTTGGAGTATAAAATATGTGAATCTCCTAATGTTGTTCAGCCAAAAGCAGTTATAGATCAACATCCTCCGAAAGCAAGTGTTTGTGCTTTCTGTTATTCTGCTAAGACCACAGAGGTGAGTTATCAGTACAGGAGAAACTTCAAGCTATCAGCTGTCTTGCTTTATACTTTTCTTAATACTCACTCCACTGCTATCATTTGGAAAGTTATCTAATTATTTTGTGGTCCACTCCTTTGTTTATCTGCACATATTCTGCTATATGTAGCCCATTCTTGATACTAACTTTTTCATTTTTTGTCAAATATTTGCAGAAAACTGGACCTTTTTTGTACTTTGCAAATGG</gDNA_template>
            <first_frame> E  N  L  T  F  W  L  D  N  Q  *  R  *  E  T  I  V  F  S  N  K  E  G  V  *  *  D  E  S  R  G  T  A  V  S  C  L  L  T  N  D  F  V  I  L  G  L  *  *  V  L  I  G  L  L  D  *  K  N  G  T  C  K  S  F  C  *  Y  S  L  L  Y  E  F  F  F  L  K  L  Y  T  N  L  I  L  S  F  Q  N  I  V  S  T  G  Y  *  Q  I  V  G  G  L  R  H  I  S  *  N  G  Y  *  A  A  K  E  T  K  L  W  F  V  R  N  E  L  R  K  S  *  S  Y  S  P  K  M  P  *  F  *  N  C  C  *  F  Q  L  Q  F  G  V  *  N  M  *  I  S  *  C  C  S  A  K  S  S  Y  R  S  T  S  S  E  S  K  C  L  C  F  L  L  F  C  *  D  H  R  G  E  L  S  V  Q  E  K  L  Q  A  I  S  C  L  A  L  Y  F  S  *  Y  S  L  H  C  Y  H  L  E  S  Y  L  I  I  L  W  S  T  P  L  F  I  C  T  Y  S  A  I  C  S  P  F  L  I  L  T  F  S  F  F  V  K  Y  L  Q  K  T  G  P  F  L  Y  F  A  N   </first_frame>
            <second_frame>  K  T  S  L  F  G  L  I  I  S  K  G  K  K  P  S  F  F  Q  T  K  K  E  F  S  R  T  N  Q  G  E  Q  Q  F  H  A  C  *  L  M  I  L  *  F  L  G  Y  N  K  F  *  L  V  C  *  I  K  K  M  E  H  A  K  V  F  V  S  I  L  S  Y  M  N  F  F  F  *  S  F  T  Q  I  *  S  S  L  S  R  I  *  S  V  Q  D  T  D  K  *  L  G  V  *  D  I  F  H  E  M  D  I  K  Q  Q  K  K  L  N  S  G  L  S  E  M  S  L  E  S  H  D  H  I  L  Q  R  C  P  S  S  E  I  V  A  D  S  N  C  N  L  E  Y  K  I  C  E  S  P  N  V  V  Q  P  K  A  V  I  D  Q  H  P  P  K  A  S  V  C  A  F  C  Y  S  A  K  T  T  E  V  S  Y  Q  Y  R  R  N  F  K  L  S  A  V  L  L  Y  T  F  L  N  T  H  S  T  A  I  I  W  K  V  I  *  L  F  C  G  P  L  L  C  L  S  A  H  I  L  L  Y  V  A  H  S  *  Y  *  L  F  H  F  L  S  N  I  C  R  K  L  D  L  F  C  T  L  Q  M  </second_frame>
            <third_frame>   K  P  H  F  L  A  *  *  S  V  K  V  R  N  H  R  F  F  K  Q  R  R  S  L  V  G  R  I  K  G  N  S  S  F  M  L  A  N  *  *  F  C  D  S  W  V  I  I  S  F  N  W  F  V  R  L  K  K  W  N  M  Q  K  F  L  L  V  F  S  P  I  *  I  F  F  F  E  A  L  H  K  F  D  P  L  F  P  E  Y  S  Q  Y  R  I  L  T  N  S  W  G  F  K  T  Y  F  M  K  W  I  L  S  S  K  R  N  *  T  L  V  C  Q  K  *  A  *  K  V  M  I  I  F  S  K  D  A  L  V  L  K  L  L  L  I  P  T  A  I  W  S  I  K  Y  V  N  L  L  M  L  F  S  Q  K  Q  L  *  I  N  I  L  R  K  Q  V  F  V  L  S  V  I  L  L  R  P  Q  R  *  V  I  S  T  G  E  T  S  S  Y  Q  L  S  C  F  I  L  F  L  I  L  T  P  L  L  S  F  G  K  L  S  N  Y  F  V  V  H  S  F  V  Y  L  H  I  F  C  Y  M  *  P  I  L  D  T  N  F  F  I  F  C  Q  I  F  A  E  N  W  T  F  F  V  L  C  K  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0032G07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91695" stop="92042"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIFHEMDIKQQKKLNSGLSEMSLESHDHILQRCPSSEIVADSNCNLEYKICESPNVVQPKAVIDQHPPKASVCAFCYSAKTTEVSYQYRRNFKLSAVLLYTFLNTHSTAIIWKVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="90797" e_stop="91223"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="90797" e_stop="91223" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90797" stop="91223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATGGTTTTTAAAAGGGAGTAACTAATACTTAATTTTTCTTTGGTAACAATCCCATTTCGTACACTAGTATAGGGCAATGGATTATCCCTTGGAAATCCAAATAAGCACCAAAATTTTTATTCATATATTCTGTGGCGTTATCAGTTCAAGATTTTTATAGCTTCAAATCATCTGGAAGCAAGAGAAAACCTCACTTTTTGCCTTGACAATCAGTAAAGGTAAGAAACCATCGATTTTTCAAACAAAGGAGGAGTTTAGTAGGACGAATCAAGAGGAACAGCAGTTTCATGCTTGCTAACTAATGATTTTGTGATTCTTGGGTTATAATAAGTTTTAATTGGTTTGTTAGATTGAAAAAATGGAACATGCAAAAGTTTTTGTTAGTATTCTCTCCTATATGATTTTCTTCTTCTTCTTTTTTTT</gDNA_template>
            <first_frame> R  H  G  F  *  K  G  V  T  N  T  *  F  F  F  G  N  N  P  I  S  Y  T  S  I  G  Q  W  I  I  P  W  K  S  K  *  A  P  K  F  L  F  I  Y  S  V  A  L  S  V  Q  D  F  Y  S  F  K  S  S  G  S  K  R  K  P  H  F  L  P  *  Q  S  V  K  V  R  N  H  R  F  F  K  Q  R  R  S  L  V  G  R  I  K  R  N  S  S  F  M  L  A  N  *  *  F  C  D  S  W  V  I  I  S  F  N  W  F  V  R  L  K  K  W  N  M  Q  K  F  L  L  V  F  S  P  I  *  F  S  S  S  S  F  F  </first_frame>
            <second_frame>  D  M  V  F  K  R  E  *  L  I  L  N  F  S  L  V  T  I  P  F  R  T  L  V  *  G  N  G  L  S  L  G  N  P  N  K  H  Q  N  F  Y  S  Y  I  L  W  R  Y  Q  F  K  I  F  I  A  S  N  H  L  E  A  R  E  N  L  T  F  C  L  D  N  Q  *  R  *  E  T  I  D  F  S  N  K  G  G  V  *  *  D  E  S  R  G  T  A  V  S  C  L  L  T  N  D  F  V  I  L  G  L  *  *  V  L  I  G  L  L  D  *  K  N  G  T  C  K  S  F  C  *  Y  S  L  L  Y  D  F  L  L  L  L  F  F </second_frame>
            <third_frame>   T  W  F  L  K  G  S  N  *  Y  L  I  F  L  W  *  Q  S  H  F  V  H  *  Y  R  A  M  D  Y  P  L  E  I  Q  I  S  T  K  I  F  I  H  I  F  C  G  V  I  S  S  R  F  L  *  L  Q  I  I  W  K  Q  E  K  T  S  L  F  A  L  T  I  S  K  G  K  K  P  S  I  F  Q  T  K  E  E  F  S  R  T  N  Q  E  E  Q  Q  F  H  A  C  *  L  M  I  L  *  F  L  G  Y  N  K  F  *  L  V  C  *  I  E  K  M  E  H  A  K  V  F  V  S  I  L  S  Y  M  I  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0032G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 126 chains have been computed
$ 
$ memory statistics:
$ 53760 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2986 bytes was the average size of a spliced alignment
$ 17088 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1708 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 153 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:09:30
-->
