<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:26:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368012" ref_strand="+" ref_description="SGN-E368012 [TUS-22-F13]">
      <seq>gatggctgagttcattgaagatacaaagaacaagaatgaagatccatccataagcattgtttctgatggaaaatcttctaatgaaccatcaaaagttgaccaagtagtagaaacacaagccgaaaatagtacacaaaatcaagaaaaagaaaatattattgctcaacaaggtcaagaagtagataaatctaaagaaaattctcaaaaacaagaacaagaacaaaccgaagaagaagaagaggaggaggaaaatgctaatgaagaggacagagcaaatttttcaacacgtccaggaaaaagatcagctcctaaacctaagactggttgagattaattatttcaatattgtgataattatttcaacaagcctagctattttttctagggttttattttggtttgttcttctcatttttaatattgtaatgtgtaaggaatattcttcttgtttctttgtttgtttttctcttccttttttttttttataaatatggtaatgattaatatatttttttgaaaaaatgtcataagaaataattaaattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="1657" stop="3429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1957" g_stop="2039" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2040" i_stop="2664" i_length="625">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2665" g_stop="3129" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="548" r_length="465" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-E368012" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1957" e_stop="2039"/>
          <exon e_start="2665" e_stop="3129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGCTGAGTTCATTGAAGATACAAAGAACAAGAATGAAGATCCATCCATAAGCATTGTTTCTGATGGAAAATCTTCTAATGGTAAGGGTTGAATATGTCGAAAATATCAAAATATTACATTTTTTTTGTAATTTTAAATATGTCATGTTGTAACGGTATTTTCTAATGGCCGAGTTCAATTTATTTTTTATTTTTTTCAATTTTCACACTATTGTGTTGTTTAGCATTGAAATGATTGAAATTATATTGAAGTATTTGAAATTATATTGAAATATATGATCATTTCATGCGTTGTTTTTGTCTTATTTTATAGTTATGTCATATTAGTTTCTATTAAATGTTGGAAAACGTATTATCATTTTAGCCTTTAGGTTTGAGAAAATACTACAATTCTTTTCATTTAATAAAGTGAAAAACTCTCCATATAGAACTTTTAAAAATATTTTATTGCACTATTTCCCCAACTTCTAGTTGGCCCATGATCTTTCACATGAGTATTATCTAAAAGTTTTGAATTGTTAATGATAACACATCATTATATATATTTAATTACATCTTCAATATAATATTTTCTTGAAATAATTTAAATACATATGTGTGTTCAATTTCTCATTCAATAAAGTGAAAAAACTCTTCTGTAAGATTGATCGAACTTCTTTAAATTTTTTTTTCATACTTTTAATATATATGTGTTCAATTTTTTCAGAACCATCAAAAGTTGACCAAGTAGTAGAAACACAAGCAGAAAATAGTACACAAAATCAAGAAAAAGAAAATATTATTGCTCAACAAGGTCAAGAAGTAGATAAATCTAAAGAAAATTCTCAAAAACAAGAACAAGAACAAACCGAAGAAGAAGAAGAGGAGGAGGAAAATGCTAATGAAGAGGACAGAGCAAATTTTTCAACACGTCCAGGAAAAAGATCAGCTCCTAAACCTAAGACTGGTTGAGATTAATTATTTCAATATTGTGATAATTATTTCAACAAGCCTAGCTATTTTTTCTAGGGTTTTATTTTGGTTTGTTCTTCTCATTTTTAATATTGTAATGTGTAAGGAATATTCTTCTTGTTTCTTTGTTTGTTTTTCTCTTCCTTTTTTTTTTTTATAAATATGGTAATGATTAATATATTTTTTTGAAAAAATGTCATAAGAAATAATTAAATTCTTT</genome_strand>
        <mrna_strand>GATGGCTGAGTTCATTGAAGATACAAAGAACAAGAATGAAGATCCATCCATAAGCATTGTTTCTGATGGAAAATCTTCTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCATCAAAAGTTGACCAAGTAGTAGAAACACAAGCCGAAAATAGTACACAAAATCAAGAAAAAGAAAATATTATTGCTCAACAAGGTCAAGAAGTAGATAAATCTAAAGAAAATTCTCAAAAACAAGAACAAGAACAAACCGAAGAAGAAGAAGAGGAGGAGGAAAATGCTAATGAAGAGGACAGAGCAAATTTTTCAACACGTCCAGGAAAAAGATCAGCTCCTAAACCTAAGACTGGTTGAGATTAATTATTTCAATATTGTGATAATTATTTCAACAAGCCTAGCTATTTTTTCTAGGGTTTTATTTTGGTTTGTTCTTCTCATTTTTAATATTGTAATGTGTAAGGAATATTCTTCTTGTTTCTTTGTTTGTTTTTCTCTTCCTTTTTTTTTTTTATAAATATGGTAATGATTAATATATTTTTTTGAAAAAATGTCATAAGAAATAATTAAATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238448" ref_strand="+" ref_description="SGN-E238448 [cLED-17-N10]">
      <seq>tggctgagttcattgaagatacaaagaacaagaatgaagatccatccataagcattgtttctgatggaaaatcttctaatgaaccatcaaaagttgaccaagtagtagaaacacaagcagaaaatagtacacaaaatcaagaaaaagaaaatattattgctcaacaaggtcaagaagtagataaatctaaagaaaattctcaaaaacaagaacaagaacaaaccgaagaagaagaagaggaggaggaaaatgctaatgaagaggacagagcaaatttttcaacacgttcaggaaaaagatcagctcctaaacctaagactggttgagattaattatttcaatattgtgataattatttcaacaagcctagctattttttctagggttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="1659" stop="3275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1959" g_stop="2039" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2040" i_stop="2664" i_length="625">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2665" g_stop="2975" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="392" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-E238448" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1959" e_stop="2039"/>
          <exon e_start="2665" e_stop="2975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTGAGTTCATTGAAGATACAAAGAACAAGAATGAAGATCCATCCATAAGCATTGTTTCTGATGGAAAATCTTCTAATGGTAAGGGTTGAATATGTCGAAAATATCAAAATATTACATTTTTTTTGTAATTTTAAATATGTCATGTTGTAACGGTATTTTCTAATGGCCGAGTTCAATTTATTTTTTATTTTTTTCAATTTTCACACTATTGTGTTGTTTAGCATTGAAATGATTGAAATTATATTGAAGTATTTGAAATTATATTGAAATATATGATCATTTCATGCGTTGTTTTTGTCTTATTTTATAGTTATGTCATATTAGTTTCTATTAAATGTTGGAAAACGTATTATCATTTTAGCCTTTAGGTTTGAGAAAATACTACAATTCTTTTCATTTAATAAAGTGAAAAACTCTCCATATAGAACTTTTAAAAATATTTTATTGCACTATTTCCCCAACTTCTAGTTGGCCCATGATCTTTCACATGAGTATTATCTAAAAGTTTTGAATTGTTAATGATAACACATCATTATATATATTTAATTACATCTTCAATATAATATTTTCTTGAAATAATTTAAATACATATGTGTGTTCAATTTCTCATTCAATAAAGTGAAAAAACTCTTCTGTAAGATTGATCGAACTTCTTTAAATTTTTTTTTCATACTTTTAATATATATGTGTTCAATTTTTTCAGAACCATCAAAAGTTGACCAAGTAGTAGAAACACAAGCAGAAAATAGTACACAAAATCAAGAAAAAGAAAATATTATTGCTCAACAAGGTCAAGAAGTAGATAAATCTAAAGAAAATTCTCAAAAACAAGAACAAGAACAAACCGAAGAAGAAGAAGAGGAGGAGGAAAATGCTAATGAAGAGGACAGAGCAAATTTTTCAACACGTCCAGGAAAAAGATCAGCTCCTAAACCTAAGACTGGTTGAGATTAATTATTTCAATATTGTGATAATTATTTCAACAAGCCTAGCTATTTTTTCTAGGGTTTTATT</genome_strand>
        <mrna_strand>TGGCTGAGTTCATTGAAGATACAAAGAACAAGAATGAAGATCCATCCATAAGCATTGTTTCTGATGGAAAATCTTCTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCATCAAAAGTTGACCAAGTAGTAGAAACACAAGCAGAAAATAGTACACAAAATCAAGAAAAAGAAAATATTATTGCTCAACAAGGTCAAGAAGTAGATAAATCTAAAGAAAATTCTCAAAAACAAGAACAAGAACAAACCGAAGAAGAAGAAGAGGAGGAGGAAAATGCTAATGAAGAGGACAGAGCAAATTTTTCAACACGTTCAGGAAAAAGATCAGCTCCTAAACCTAAGACTGGTTGAGATTAATTATTTCAATATTGTGATAATTATTTCAACAAGCCTAGCTATTTTTTCTAGGGTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281162" ref_strand="+" ref_description="SGN-E281162 [cLER-7-B16]">
      <seq>aaaagttgaccaagtagtagaaacacaagcagaaaatagtacacaaaatcaagaaaaagaaaatattattgctcaacaaggtcaagaagtagataaatctaaagaaaattctcaaaaacaagaacaagaacaaaccgaagaagaagaagaggaggaggaaaatgctaatgaagaggacagagcaaatttttcaacacgtccaggaaaaagatcagctcctaaacctaagactggttgagattaattatttcaatattgtgataattatttcaacaagcctagctattttttctagggttttattttggtttgttcttctcatttttaatattgtaatgtgtaaggaatattcttcttgtttaaaaaaaaaacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="2372" stop="3332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2672" g_stop="3017" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="378"/>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-E281162" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2672" e_stop="3017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTGACCAAGTAGTAGAAACACAAGCAGAAAATAGTACACAAAATCAAGAAAAAGAAAATATTATTGCTCAACAAGGTCAAGAAGTAGATAAATCTAAAGAAAATTCTCAAAAACAAGAACAAGAACAAACCGAAGAAGAAGAAGAGGAGGAGGAAAATGCTAATGAAGAGGACAGAGCAAATTTTTCAACACGTCCAGGAAAAAGATCAGCTCCTAAACCTAAGACTGGTTGAGATTAATTATTTCAATATTGTGATAATTATTTCAACAAGCCTAGCTATTTTTTCTAGGGTTTTATTTTGGTTTGTTCTTCTCATTTTTAATATTGTAATGTGTAAGGA</genome_strand>
        <mrna_strand>AAAAGTTGACCAAGTAGTAGAAACACAAGCAGAAAATAGTACACAAAATCAAGAAAAAGAAAATATTATTGCTCAACAAGGTCAAGAAGTAGATAAATCTAAAGAAAATTCTCAAAAACAAGAACAAGAACAAACCGAAGAAGAAGAAGAGGAGGAGGAAAATGCTAATGAAGAGGACAGAGCAAATTTTTCAACACGTCCAGGAAAAAGATCAGCTCCTAAACCTAAGACTGGTTGAGATTAATTATTTCAATATTGTGATAATTATTTCAACAAGCCTAGCTATTTTTTCTAGGGTTTTATTTTGGTTTGTTCTTCTCATTTTTAATATTGTAATGTGTAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549188" ref_strand="+" ref_description="SGN-E549188 [TUS-68-B21](-)">
      <seq>ataaaaatggctaatttcttcatagatataaagaagattgaagatttgtttgtatacattgtttcttgtggaaaatcttctaaagaaggagaagagaatgatggaggaagagcaaatgtttcaagacctccaggccaaagaccagctcctaggcctcagactggtcgataataattaatgttagtgattattatttcaaaaaactttgttgttttatgataaaaaataattaatgttatgatattttttaagattgtaattcttaatctgttttaaaaagaacaattaaattgtgcaacatttatttgtacaattacacccantatatatgtaatatatacctttttatcaatttgtagtctatgtgtgacttgtttatacacgtatatacaattacatactctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="6577" stop="7691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6877" g_stop="6961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6962" i_stop="7069" i_length="108">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7070" g_stop="7388" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="405" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="416"/>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-E549188" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6877" e_stop="6961"/>
          <exon e_start="7070" e_stop="7388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAATGGCTAATTTCTTCATAGATATAAAGAAGATTGAAGATTTGTTTGTATACATTGTTTCTTGTGGAAAATCTTCTAAAGGTAACATCACTTAGAGATAATACACTTTTATTCGTTTAATTATTACGTTTTTTAACATACTTTTTTTTTGAAATAATAAAATGATTGTGATGTACCAAAAAAATGTAGAAGGAGAAGAGAATGATGGAGGAAGAGCAAATGTTTCAAGACCTCCAGGCCAAAGACCAGCTCCTAGGCCTCAGACTGGTCGATAATAATTAATGTTAGTGATTATTATTTCAAAAAACTTTGTTGTTTTATGATAAAAAATAATTAATGTTATGATATTTTTTAAGATTGTAATTCTTAATCTGTTTTAAAAAGAACAATTAAATTGTGCAACATTTATTTGTACAATTACACCCA-TATATATGTAATATATACCTTTTTATCAATTTGTAGTCTATGTGTGACTTGTTTATACACGTATATACAATTACATACTCTC</genome_strand>
        <mrna_strand>ATAAAAATGGCTAATTTCTTCATAGATATAAAGAAGATTGAAGATTTGTTTGTATACATTGTTTCTTGTGGAAAATCTTCTAAAG............................................................................................................AAGGAGAAGAGAATGATGGAGGAAGAGCAAATGTTTCAAGACCTCCAGGCCAAAGACCAGCTCCTAGGCCTCAGACTGGTCGATAATAATTAATGTTAGTGATTATTATTTCAAAAAACTTTGTTGTTTTATGATAAAAAATAATTAATGTTATGATATTTTTTAAGATTGTAATTCTTAATCTGTTTTAAAAAGAACAATTAAATTGTGCAACATTTATTTGTACAATTACACCCANTATATATGTAATATATACCTTTTTATCAATTTGTAGTCTATGTGTGACTTGTTTATACACGTATATACAATTACATACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545325" ref_strand="+" ref_description="SGN-E545325 [TUS-68-B21]">
      <seq>ataaaaatggctaatttcttcatagatataaagaagattgaagatttgtttgtatacattgtttcttgtggaaaatcttctaaagaaggagaagagaatgatggaggaagagcaaatgtttcaagacctccaggccaaagaccagctcctaggcctcagactggtcgataataattaatgttagtgattattatttcaaaaaactttgttgttttatgataaaaaataattaatgttatgatattttttaagattgtaattcttaatctgttttaaaaagaacaattaaattgtgcaacatttatttgtacaattacacccatatatatgtaatatatacctttttatcaatttgtagtctatgtgtgacttgtttatacacgtatatacaattacatactctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="6577" stop="7691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6877" g_stop="6961" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6962" i_stop="7069" i_length="108">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7070" g_stop="7388" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="404" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="415"/>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-E545325" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6877" e_stop="6961"/>
          <exon e_start="7070" e_stop="7388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAATGGCTAATTTCTTCATAGATATAAAGAAGATTGAAGATTTGTTTGTATACATTGTTTCTTGTGGAAAATCTTCTAAAGGTAACATCACTTAGAGATAATACACTTTTATTCGTTTAATTATTACGTTTTTTAACATACTTTTTTTTTGAAATAATAAAATGATTGTGATGTACCAAAAAAATGTAGAAGGAGAAGAGAATGATGGAGGAAGAGCAAATGTTTCAAGACCTCCAGGCCAAAGACCAGCTCCTAGGCCTCAGACTGGTCGATAATAATTAATGTTAGTGATTATTATTTCAAAAAACTTTGTTGTTTTATGATAAAAAATAATTAATGTTATGATATTTTTTAAGATTGTAATTCTTAATCTGTTTTAAAAAGAACAATTAAATTGTGCAACATTTATTTGTACAATTACACCCATATATATGTAATATATACCTTTTTATCAATTTGTAGTCTATGTGTGACTTGTTTATACACGTATATACAATTACATACTCTC</genome_strand>
        <mrna_strand>ATAAAAATGGCTAATTTCTTCATAGATATAAAGAAGATTGAAGATTTGTTTGTATACATTGTTTCTTGTGGAAAATCTTCTAAAG............................................................................................................AAGGAGAAGAGAATGATGGAGGAAGAGCAAATGTTTCAAGACCTCCAGGCCAAAGACCAGCTCCTAGGCCTCAGACTGGTCGATAATAATTAATGTTAGTGATTATTATTTCAAAAAACTTTGTTGTTTTATGATAAAAAATAATTAATGTTATGATATTTTTTAAGATTGTAATTCTTAATCTGTTTTAAAAAGAACAATTAAATTGTGCAACATTTATTTGTACAATTACACCCATATATATGTAATATATACCTTTTTATCAATTTGTAGTCTATGTGTGACTTGTTTATACACGTATATACAATTACATACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309825" ref_strand="+" ref_description="SGN-E309825 [cLEZ-10-A10]">
      <seq>taaaaatggctaatttcttcatagatataaagaagattgaagatttgtttgtatacattgtttcttgtggaaaatcttctaaagaaggagaagagaatgatggaggaagagcaaatgtttcaagacctccaggccaaagaccagctcctaggcctcagactggtcgataataattaatgttagtgattattatttcaaaaaactttgttgttttatgataaaaaataattaatgttatgatattttttaagattgtaattcttaatctgttttaaaaagaacaattaaattgtgcaacatttatttgtacaattacacccatatatatgtaatatatacctttttatcaatttgtagtctatgtgtgacttgtttatacacgtatatacaattacatactctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="6578" stop="7691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6878" g_stop="6961" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6962" i_stop="7069" i_length="108">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7070" g_stop="7388" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="403" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="414"/>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-E309825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6878" e_stop="6961"/>
          <exon e_start="7070" e_stop="7388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATGGCTAATTTCTTCATAGATATAAAGAAGATTGAAGATTTGTTTGTATACATTGTTTCTTGTGGAAAATCTTCTAAAGGTAACATCACTTAGAGATAATACACTTTTATTCGTTTAATTATTACGTTTTTTAACATACTTTTTTTTTGAAATAATAAAATGATTGTGATGTACCAAAAAAATGTAGAAGGAGAAGAGAATGATGGAGGAAGAGCAAATGTTTCAAGACCTCCAGGCCAAAGACCAGCTCCTAGGCCTCAGACTGGTCGATAATAATTAATGTTAGTGATTATTATTTCAAAAAACTTTGTTGTTTTATGATAAAAAATAATTAATGTTATGATATTTTTTAAGATTGTAATTCTTAATCTGTTTTAAAAAGAACAATTAAATTGTGCAACATTTATTTGTACAATTACACCCATATATATGTAATATATACCTTTTTATCAATTTGTAGTCTATGTGTGACTTGTTTATACACGTATATACAATTACATACTCTC</genome_strand>
        <mrna_strand>TAAAAATGGCTAATTTCTTCATAGATATAAAGAAGATTGAAGATTTGTTTGTATACATTGTTTCTTGTGGAAAATCTTCTAAAG............................................................................................................AAGGAGAAGAGAATGATGGAGGAAGAGCAAATGTTTCAAGACCTCCAGGCCAAAGACCAGCTCCTAGGCCTCAGACTGGTCGATAATAATTAATGTTAGTGATTATTATTTCAAAAAACTTTGTTGTTTTATGATAAAAAATAATTAATGTTATGATATTTTTTAAGATTGTAATTCTTAATCTGTTTTAAAAAGAACAATTAAATTGTGCAACATTTATTTGTACAATTACACCCATATATATGTAATATATACCTTTTTATCAATTTGTAGTCTATGTGTGACTTGTTTATACACGTATATACAATTACATACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309602" ref_strand="+" ref_description="SGN-E309602 [cLEY-26-K16]">
      <seq>gaggaaaatcttctaaagaaggagaagagaatgatggaggaagagcaaatgtttcaagacctccaggccaaagacccagctcctaggcctcagacctggtcgataataattaatgttagtgattattatttcaaaaaactttgttgttttatgataaaaaataattaatgttatgatattttttaagattgtaattcttaatctgttttaaaaagaacaattaaattgtgcaacatttatttgtaccaattacccccatatatatgtaatatataccctttttatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="6768" stop="7635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6944" g_stop="6961" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6962" i_stop="7069" i_length="108">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7070" g_stop="7330" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="282" r_length="264" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="287" polyA_stop="297"/>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-E309602" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6944" e_stop="6961"/>
          <exon e_start="7070" e_stop="7330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAAAATCTTCTAAAGGTAACATCACTTAGAGATAATACACTTTTATTCGTTTAATTATTACGTTTTTTAACATACTTTTTTTTTGAAATAATAAAATGATTGTGATGTACCAAAAAAATGTAGAAGGAGAAGAGAATGATGGAGGAAGAGCAAATGTTTCAAGACCTCCAGGCCAAAGACC-AGCTCCTAGGCCTCAGA-CTGGTCGATAATAATTAATGTTAGTGATTATTATTTCAAAAAACTTTGTTGTTTTATGATAAAAAATAATTAATGTTATGATATTTTTTAAGATTGTAATTCTTAATCTGTTTTAAAAAGAACAATTAAATTGTGCAACATTTATTTGTA-CAATTACACCCATATATATGTAATATATACCTTTTT</genome_strand>
        <mrna_strand>GAGGAAAATCTTCTAAAG............................................................................................................AAGGAGAAGAGAATGATGGAGGAAGAGCAAATGTTTCAAGACCTCCAGGCCAAAGACCCAGCTCCTAGGCCTCAGACCTGGTCGATAATAATTAATGTTAGTGATTATTATTTCAAAAAACTTTGTTGTTTTATGATAAAAAATAATTAATGTTATGATATTTTTTAAGATTGTAATTCTTAATCTGTTTTAAAAAGAACAATTAAATTGTGCAACATTTATTTGTACCAATTACCCCCATATATATGTAATATATACCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550493" ref_strand="+" ref_description="SGN-E550493 [TUS-6-C15]">
      <seq>tgaatgctaattatatttctccaactatatattatattttaaggaacaagtatgtattgaacctttcaacatttatgatctaaaattaagggagataatagctaaggggaaaaagcaagatggccattttcctgtaagatacgaagaatcaagatatattcaaaaaccttgcttctaatggtaagagtgagtaattaaaaactatcatcctatctacatatatatactcatttcatcatatcattgtccttgatatcaattgttgggctaaaataacgtaacatttaatatattatttatatttggtgtgatatatatagtggcggattcagaattttcatttagagggtttaaataataaaagtataaacgtgtaaataagtctttcggaatgggacccttgaatttttttgggtttaaaaccacagttttagcgcgtagattcgaactaggggcgtccagcttaatattctggggtcttgccactgaaccatctatttctatttgttattgaaggggttcaaaatatatgaatctacaggaatacggaaaatttatcttatatatatcttatatttttttgccgagggatggaccctacatgggtccgccctgtacaagatcaagaaaatataagtactccctctattttacaaagaatgatctggtttgacttggtacggagtttaaaatataaagaatttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="15363" stop="16672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15663" g_stop="16372" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-E550493" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15663" e_stop="16372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGCTAATTATATTTCTCCAACTATATATTATATTTTAAGGAACAAGTATGTATTGAACCTTTCAACATTTATGATCTAAAATTAAGGGAGATAATAGCTAAGGGGAAAAAGCAAGATGGCCATTTTCCTGTAAGATACGAAGAATCAAGATATATTCAAAAACCTTGCTTCTAATGGTAAGAGTGAGTAATTAAAAACTATCATCCTATCTACATATATATACTCATTTCATCATATCATTGTCCTTGATATCAATTGTTGGGCTAAAATAACGTAACATTTAATATATTATTTATATTTGGTGTGATATATATAGTGGCGGATTCAGAATTTTCATTTAGAGGGTTTAAATAATAAAAGTATAAACGTGTAAATAAGTCTTTCGGAATGGGACCCTTGAATTTTTTTGGGTTTAAAACCACAGTTTTAGCGCGTAGATTCGAACTAGGGGCGTCCAGCTTAATATTCTGGGGTCTTGCCACTGAACCATCTATTTCTATTTGTTATTGAAGGGGTTCAAAATATATGAATCTACAGGAATACGGAAAATTTATCTTATATATATCTTATATTTTTTTGCCGAGGGATGGACCCTACATGGGTCCGCCCTGTACAAGATCAAGAAAATATAAGTACTCCCTCTATTTTACAAAGAATGATCTGGTTTGACTTGGTACGGAGTTTAAAAATATAAAGAATTTTTTTG</genome_strand>
        <mrna_strand>TGAATGCTAATTATATTTCTCCAACTATATATTATATTTTAAGGAACAAGTATGTATTGAACCTTTCAACATTTATGATCTAAAATTAAGGGAGATAATAGCTAAGGGGAAAAAGCAAGATGGCCATTTTCCTGTAAGATACGAAGAATCAAGATATATTCAAAAACCTTGCTTCTAATGGTAAGAGTGAGTAATTAAAAACTATCATCCTATCTACATATATATACTCATTTCATCATATCATTGTCCTTGATATCAATTGTTGGGCTAAAATAACGTAACATTTAATATATTATTTATATTTGGTGTGATATATATAGTGGCGGATTCAGAATTTTCATTTAGAGGGTTTAAATAATAAAAGTATAAACGTGTAAATAAGTCTTTCGGAATGGGACCCTTGAATTTTTTTGGGTTTAAAACCACAGTTTTAGCGCGTAGATTCGAACTAGGGGCGTCCAGCTTAATATTCTGGGGTCTTGCCACTGAACCATCTATTTCTATTTGTTATTGAAGGGGTTCAAAATATATGAATCTACAGGAATACGGAAAATTTATCTTATATATATCTTATATTTTTTTGCCGAGGGATGGACCCTACATGGGTCCGCCCTGTACAAGATCAAGAAAATATAAGTACTCCCTCTATTTTACAAAGAATGATCTGGTTTGACTTGGTACGGAGTTT-AAAATATAAAGAATTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549919" ref_strand="+" ref_description="SGN-E549919 [TUS-6-C16]">
      <seq>tgaatgctaattatatttctccaactatatattatattttaaggaacaagtatgtattgaacctttcaacatttatgatctaaaattaagggagataatagctaaggggaaaaagcaagatggccattttcctgtaagatacgaagaatcaagatatattcaaaaaccttgcttctaatggtaagagtgagtaattaaaaactatcatcctatctacatatatatactcatttcatcatatcattgtccttgatatcaattgttgggctaaaataacgtaacatttaatatattatttatatttggtgtgatatatatagtggcggattcagaattttcatttagagggtttaaataataaaagtataaacgtgtaaataagtctttcggaatgggacccttgaatttttttgggtttaaaaccacagttttagcgcgtagattcgaactaggggcgtccagcttaatattctggggtcttgccactgaaccatctatttctatttgttattgaaggggttcaaaatatatgaatctacaggaatacggaaaatttatcttatatatatcttatatttttttgccgagggatggaccctacatgggtccgccctgtacaagatcaagaaaatataagtactccctctattttacaaagaatgatctggtttgacttggtacggagtttaaaaatataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="15363" stop="16662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15663" g_stop="16362" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-E549919" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15663" e_stop="16362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGCTAATTATATTTCTCCAACTATATATTATATTTTAAGGAACAAGTATGTATTGAACCTTTCAACATTTATGATCTAAAATTAAGGGAGATAATAGCTAAGGGGAAAAAGCAAGATGGCCATTTTCCTGTAAGATACGAAGAATCAAGATATATTCAAAAACCTTGCTTCTAATGGTAAGAGTGAGTAATTAAAAACTATCATCCTATCTACATATATATACTCATTTCATCATATCATTGTCCTTGATATCAATTGTTGGGCTAAAATAACGTAACATTTAATATATTATTTATATTTGGTGTGATATATATAGTGGCGGATTCAGAATTTTCATTTAGAGGGTTTAAATAATAAAAGTATAAACGTGTAAATAAGTCTTTCGGAATGGGACCCTTGAATTTTTTTGGGTTTAAAACCACAGTTTTAGCGCGTAGATTCGAACTAGGGGCGTCCAGCTTAATATTCTGGGGTCTTGCCACTGAACCATCTATTTCTATTTGTTATTGAAGGGGTTCAAAATATATGAATCTACAGGAATACGGAAAATTTATCTTATATATATCTTATATTTTTTTGCCGAGGGATGGACCCTACATGGGTCCGCCCTGTACAAGATCAAGAAAATATAAGTACTCCCTCTATTTTACAAAGAATGATCTGGTTTGACTTGGTACGGAGTTTAAAAATATAAAG</genome_strand>
        <mrna_strand>TGAATGCTAATTATATTTCTCCAACTATATATTATATTTTAAGGAACAAGTATGTATTGAACCTTTCAACATTTATGATCTAAAATTAAGGGAGATAATAGCTAAGGGGAAAAAGCAAGATGGCCATTTTCCTGTAAGATACGAAGAATCAAGATATATTCAAAAACCTTGCTTCTAATGGTAAGAGTGAGTAATTAAAAACTATCATCCTATCTACATATATATACTCATTTCATCATATCATTGTCCTTGATATCAATTGTTGGGCTAAAATAACGTAACATTTAATATATTATTTATATTTGGTGTGATATATATAGTGGCGGATTCAGAATTTTCATTTAGAGGGTTTAAATAATAAAAGTATAAACGTGTAAATAAGTCTTTCGGAATGGGACCCTTGAATTTTTTTGGGTTTAAAACCACAGTTTTAGCGCGTAGATTCGAACTAGGGGCGTCCAGCTTAATATTCTGGGGTCTTGCCACTGAACCATCTATTTCTATTTGTTATTGAAGGGGTTCAAAATATATGAATCTACAGGAATACGGAAAATTTATCTTATATATATCTTATATTTTTTTGCCGAGGGATGGACCCTACATGGGTCCGCCCTGTACAAGATCAAGAAAATATAAGTACTCCCTCTATTTTACAAAGAATGATCTGGTTTGACTTGGTACGGAGTTTAAAAATATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239737" ref_strand="+" ref_description="SGN-E239737 [cLED-33-M23]">
      <seq>gaatgctaattatatttctccaactatatattatattttaaggaacaagtatgtattgaacctttcaacatttatgatctaaaattaagggagataatagctaaggggaaaaagcaagatggccattttcctgtaagatacgaagaatcaagatatattcaaaaaccttgcttctaatggtaagagtgagtaattaaaaactatcatcctatctacatatatatactcatttcatcatatcattgtccttgatatcaattgttgggctaaaataacgtaacatttaatatattatttatatttggtgtgatatatatagtggcggattcagaattttcatttagagggtttaaataataaaagtataaacgtgtaaataagtctttcggaatgggacccttgaatttttttgggtttaaaaccacagttttagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="15364" stop="16399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15664" g_stop="16099" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-E239737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15664" e_stop="16099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGCTAATTATATTTCTCCAACTATATATTATATTTTAAGGAACAAGTATGTATTGAACCTTTCAACATTTATGATCTAAAATTAAGGGAGATAATAGCTAAGGGGAAAAAGCAAGATGGCCATTTTCCTGTAAGATACGAAGAATCAAGATATATTCAAAAACCTTGCTTCTAATGGTAAGAGTGAGTAATTAAAAACTATCATCCTATCTACATATATATACTCATTTCATCATATCATTGTCCTTGATATCAATTGTTGGGCTAAAATAACGTAACATTTAATATATTATTTATATTTGGTGTGATATATATAGTGGCGGATTCAGAATTTTCATTTAGAGGGTTTAAATAATAAAAGTATAAACGTGTAAATAAGTCTTTCGGAATGGGACCCTTGAATTTTTTTGGGTTTAAAACCACAGTTTTAGCGC</genome_strand>
        <mrna_strand>GAATGCTAATTATATTTCTCCAACTATATATTATATTTTAAGGAACAAGTATGTATTGAACCTTTCAACATTTATGATCTAAAATTAAGGGAGATAATAGCTAAGGGGAAAAAGCAAGATGGCCATTTTCCTGTAAGATACGAAGAATCAAGATATATTCAAAAACCTTGCTTCTAATGGTAAGAGTGAGTAATTAAAAACTATCATCCTATCTACATATATATACTCATTTCATCATATCATTGTCCTTGATATCAATTGTTGGGCTAAAATAACGTAACATTTAATATATTATTTATATTTGGTGTGATATATATAGTGGCGGATTCAGAATTTTCATTTAGAGGGTTTAAATAATAAAAGTATAAACGTGTAAATAAGTCTTTCGGAATGGGACCCTTGAATTTTTTTGGGTTTAAAACCACAGTTTTAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241400" ref_strand="+" ref_description="SGN-E241400 [cLED-28-P5]">
      <seq>acatgtatatatataaaattaaaattttaacctaactcaatgacataatttctgactaatagatatgaaatgacattccttagtatgactgtacactgaatatgagcagcgtacacaaatgaaaggatccaagattacgtataaattaatattcttttactagcaataatttgaagcacatgatcctgaacaattattatgaatttaattgtcttaaatgttaggggggggtatttttatttttgtcttaaatgatagggaggggatattttactcttttggtcttttctaaaaataaataatcatgaaatgacttctcaactttatttatattatagctattttaatttatttaagactaagaaggaaagtgtatttaggagcggagttatcttgaacgaaggatgattcattatacactttttttatatgtgatgtttagaagttaaatggtagatattataattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="19101" stop="20170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19401" g_stop="19870" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-E241400" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19401" e_stop="19870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTATATATATAAAATTAAAATTTTAACCTAACTCAATGACATAATTTCTGACTAATAGATATGAAATGACATTCCTTAGTATGACTGTACACTGAATATGAGCAGCGTACACAAATGAAAGGATCCAAGATTACGTATAAATTAATATTCTTTTACTAGCAATAATTTGAAGCACATGATCCTGAACAATTATTATGAATTTAATTGTCTTAAATGTTAGGTGGGTTTATTTTTATTTTTGTCTTAAATGATAGGTAGGGTATATTTTACTCTTTTGTTCTTTTCTAAAAATAAATAATCATGAAATGACTTCTCAACTTTATTTATATTATAGCTATTTTAATTTATTTAAGACTAAGAAGGAAAGTATATTTAGGAGCGGAGTTATCTTGAACGAAGGATGATTCATTATACACTTTTTTTATATGTGATGTTTAGAAGTTAAATGTTAGATATTATAATTATC</genome_strand>
        <mrna_strand>ACATGTATATATATAAAATTAAAATTTTAACCTAACTCAATGACATAATTTCTGACTAATAGATATGAAATGACATTCCTTAGTATGACTGTACACTGAATATGAGCAGCGTACACAAATGAAAGGATCCAAGATTACGTATAAATTAATATTCTTTTACTAGCAATAATTTGAAGCACATGATCCTGAACAATTATTATGAATTTAATTGTCTTAAATGTTAGGGGGGGGTATTTTTATTTTTGTCTTAAATGATAGGGAGGGGATATTTTACTCTTTTGGTCTTTTCTAAAAATAAATAATCATGAAATGACTTCTCAACTTTATTTATATTATAGCTATTTTAATTTATTTAAGACTAAGAAGGAAAGTGTATTTAGGAGCGGAGTTATCTTGAACGAAGGATGATTCATTATACACTTTTTTTATATGTGATGTTTAGAAGTTAAATGGTAGATATTATAATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540020" ref_strand="+" ref_description="SGN-E540020 [TUS-60-B7]">
      <seq>taagtcttgggcatttggcaaaactactcataatttaataatttcttgaagttgtataaacatatggatatggtgatgaagttgggaacatcaagcgcggtggtgatattcacaaagagtagttgttgcatttctcatagcattgaaaccctaatccgtagctttggagcaaaccctaccgtttacgagcttgatacacatccaaatgggaagcaaatggagaaggcattgatggagctagggtgtcaaccaagtgtaccaacaatatttatagggaaagagttagttggtggtgcaaatgagataatgagccttaatgtgaggggcaaacttaaacaattgctcattagggctaatgccatttgggtataaaaagtaattatataataacaagcgtatttggaggtttttatataataaatatatacaacttatacatagagtcttttagcttctttggatggttgttttatctacctatttgattaagttcttgatgtatgaacaaataataatatcttatactaaannaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="51517" stop="50388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51217" g_stop="50687" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="550"/>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E540020" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51217" e_stop="50687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTCTTGGGCATTTGGCAAAACTACTCATAATTTAATAATTTCTTGAAGTTGTATAAACATATGGATATGGTGATGAAGTTGGGAACATCAAGCGCGGTGGTGATATTCACAAAGAGTAGTTGTTGCATTTCTCATAGCATTGAAACCCTAATCCGTAGCTTTGGAGCAAACCCTACCGTTTACGAGCTTGATACACATCCAAATGGGAAGCAAATGGAGAAGGCATTGATGGAGCTAGGGTGTCAACCAAGTGTACCAACAATATTTATAGGGAAAGAGTTAGTTGGTGGTGCAAATGAGATAATGAGCCTTAATGTGAGGGGCAAACTTAAACAATTGCTCATTAGGGCTAATGCCATTTGGGTATAAAAAGTAATTATATAATAACAAGCGTATTTGGAGGTTTTTATATAATAAATATATACAACTTATACATAGAGTCTTTTAGCTTCTTTGGATGGTTGTTTTATCTACCTATTTGATTAAGTTCTTGATGTATGAACAAATAATAATATCTTATACTATAAT</genome_strand>
        <mrna_strand>TAAGTCTTGGGCATTTGGCAAAACTACTCATAATTTAATAATTTCTTGAAGTTGTATAAACATATGGATATGGTGATGAAGTTGGGAACATCAAGCGCGGTGGTGATATTCACAAAGAGTAGTTGTTGCATTTCTCATAGCATTGAAACCCTAATCCGTAGCTTTGGAGCAAACCCTACCGTTTACGAGCTTGATACACATCCAAATGGGAAGCAAATGGAGAAGGCATTGATGGAGCTAGGGTGTCAACCAAGTGTACCAACAATATTTATAGGGAAAGAGTTAGTTGGTGGTGCAAATGAGATAATGAGCCTTAATGTGAGGGGCAAACTTAAACAATTGCTCATTAGGGCTAATGCCATTTGGGTATAAAAAGTAATTATATAATAACAAGCGTATTTGGAGGTTTTTATATAATAAATATATACAACTTATACATAGAGTCTTTTAGCTTCTTTGGATGGTTGTTTTATCTACCTATTTGATTAAGTTCTTGATGTATGAACAAATAATAATATCTTATACTAAANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540018" ref_strand="+" ref_description="SGN-E540018 [TUS-60-B7](-)">
      <seq>taagtcttgggcatttggcaaaactactcataatttaataatttcttgaagttgtataaacatatggatatggtgatgaagttgggaacatcaagcgcggtggtgatattcacaaagagtagttgttgcatttctcatagcattgaaaccctaatccgtagctttggagcaaaccctaccgtttacgagcttgatacacatccaaatgggaagcaaatggagaaggcattgatggagctagggtgtcaaccaagtgtaccaacaatatttatagggaaagagttagttggtggtgcaaatgagataatgagccttaatgtgaggggcaaacttaaacaattgctcattagggctaatgccatttgggtataaaaagtaattatataataacaagcgtatttggaggtttttatataataaatatatacaacttatacatagagtcttttagcttctttggatggttgttttatctacctatttgattaagttcttgatgtatgaacaaataataatatcttatctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="51517" stop="50388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51217" g_stop="50697" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="526" polyA_stop="549"/>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E540018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51217" e_stop="50697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTCTTGGGCATTTGGCAAAACTACTCATAATTTAATAATTTCTTGAAGTTGTATAAACATATGGATATGGTGATGAAGTTGGGAACATCAAGCGCGGTGGTGATATTCACAAAGAGTAGTTGTTGCATTTCTCATAGCATTGAAACCCTAATCCGTAGCTTTGGAGCAAACCCTACCGTTTACGAGCTTGATACACATCCAAATGGGAAGCAAATGGAGAAGGCATTGATGGAGCTAGGGTGTCAACCAAGTGTACCAACAATATTTATAGGGAAAGAGTTAGTTGGTGGTGCAAATGAGATAATGAGCCTTAATGTGAGGGGCAAACTTAAACAATTGCTCATTAGGGCTAATGCCATTTGGGTATAAAAAGTAATTATATAATAACAAGCGTATTTGGAGGTTTTTATATAATAAATATATACAACTTATACATAGAGTCTTTTAGCTTCTTTGGATGGTTGTTTTATCTACCTATTTGATTAAGTTCTTGATGTATGAACAAATAATAATATCTT</genome_strand>
        <mrna_strand>TAAGTCTTGGGCATTTGGCAAAACTACTCATAATTTAATAATTTCTTGAAGTTGTATAAACATATGGATATGGTGATGAAGTTGGGAACATCAAGCGCGGTGGTGATATTCACAAAGAGTAGTTGTTGCATTTCTCATAGCATTGAAACCCTAATCCGTAGCTTTGGAGCAAACCCTACCGTTTACGAGCTTGATACACATCCAAATGGGAAGCAAATGGAGAAGGCATTGATGGAGCTAGGGTGTCAACCAAGTGTACCAACAATATTTATAGGGAAAGAGTTAGTTGGTGGTGCAAATGAGATAATGAGCCTTAATGTGAGGGGCAAACTTAAACAATTGCTCATTAGGGCTAATGCCATTTGGGTATAAAAAGTAATTATATAATAACAAGCGTATTTGGAGGTTTTTATATAATAAATATATACAACTTATACATAGAGTCTTTTAGCTTCTTTGGATGGTTGTTTTATCTACCTATTTGATTAAGTTCTTGATGTATGAACAAATAATAATATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288480" ref_strand="+" ref_description="SGN-E288480 [cLES-8-O9]">
      <seq>aagtcttgggcatttggcaaaactactcataatttaataatttcttgaagttgtataaacatatggatatggtgatgaagttgggaacatcaagcgcggtggtgatattcacaaagagtagttgttgcatttctcatagcattgaaaccctaatccgtagctttggagcaaaccctaccgtttacgagcttgatacacatccaaatgggaagcaaatggagaaggcattgatggagctagggtgtcaaccaagtgtaccaacaatatttatagggaaagagttagttggtggtgcaaatgacataatgagccttaatgtgaggggcaaacttaaacaattgctcattagggctaatgccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="51516" stop="50556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51216" g_stop="50856" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E288480" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51216" e_stop="50856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCTTGGGCATTTGGCAAAACTACTCATAATTTAATAATTTCTTGAAGTTGTATAAACATATGGATATGGTGATGAAGTTGGGAACATCAAGCGCGGTGGTGATATTCACAAAGAGTAGTTGTTGCATTTCTCATAGCATTGAAACCCTAATCCGTAGCTTTGGAGCAAACCCTACCGTTTACGAGCTTGATACACATCCAAATGGGAAGCAAATGGAGAAGGCATTGATGGAGCTAGGGTGTCAACCAAGTGTACCAACAATATTTATAGGGAAAGAGTTAGTTGGTGGTGCAAATGAGATAATGAGCCTTAATGTGAGGGGCAAACTTAAACAATTGCTCATTAGGGCTAATGCCAT</genome_strand>
        <mrna_strand>AAGTCTTGGGCATTTGGCAAAACTACTCATAATTTAATAATTTCTTGAAGTTGTATAAACATATGGATATGGTGATGAAGTTGGGAACATCAAGCGCGGTGGTGATATTCACAAAGAGTAGTTGTTGCATTTCTCATAGCATTGAAACCCTAATCCGTAGCTTTGGAGCAAACCCTACCGTTTACGAGCTTGATACACATCCAAATGGGAAGCAAATGGAGAAGGCATTGATGGAGCTAGGGTGTCAACCAAGTGTACCAACAATATTTATAGGGAAAGAGTTAGTTGGTGGTGCAAATGACATAATGAGCCTTAATGTGAGGGGCAAACTTAAACAATTGCTCATTAGGGCTAATGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537756" ref_strand="-" ref_description="SGN-E537756 [TUS-56-I10](-)">
      <seq>cgggcccccctcgagttttttttttttctttttttttttttctctattaagcatatttatatatatacttctttctgttcttcgatatattttcaaatttatgagaaaaaatcacatgtttttcatgtacaagtgtttagtcacatttctggagtaagatcaagctgctttctcaattgcttctatgcagtctacgaccgatgccttgtttgtcattgccgctattagggcttcatgaagcttgctattatttttcagtagtgaagcagcaaataagacctgcaaaaattgaatcagacaaactaatggtcttgcttggatttacttgcaacattataatcaatgtcttcgtttagcttagaagtggcaaaagcaaacaatctacgtgtggtatgcatcttgaattttgtatatgtttgtatgttagaaatatgtgatcatctcatcacatacttttacttttaattatgtagttatattatgtctcaccacctcttgtgatgtgctctgataccatgttgaagtgtgtgatgatttcatataaaagcttaaactactagagactaagacacttttaattgacttaattatgttatatatttcaatagtttgtgtatatttatcacagtatgtgttcggttttagactcaccgcccatcttgtaaggttctgctgctggtctttgctaagcgacggcttgctcctgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="24082" stop="85150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83124" g_stop="83156" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.424"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83157" i_stop="84174" i_length="1018">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84175" g_stop="84850" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="709" r_length="676" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-E537756" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537756" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83124" e_stop="83156"/>
          <exon e_start="84175" e_stop="84850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCATTGCACTTGCTTTTACCTCACCATTGAATCTCCTTTTTCTAGCCTGGATCAAGTTCCTGCTCATTAATTCTTCCAAATAATCTATTGCCATTTCCTCCAAACTTCCAGCAGATGTCCTAATGAAACCTTCTGCGATCCATAATTGGATCAATCTCTGAGTATCAACTTCAAAGTCCTCTGGGAAATCAACCATAGAGAGAAAGCAGGGTTTGAGGTGATTAGGCAAGTGGTGATAACTCAAACCGAGCACTGCTAAGCATTTATCTGGATGACTAGCAATGATTTCACTTAAGGTTCGGGCAACATCCTTCCAACTTCCTAATGTTCTGGCCACTTTACAGAGATGTCCTGCAATCACGGAAATTGTCAAGGGTAGTCCTTGACATTTTTCAACTATTTTCTTTCCGAGGATGATCAATTTTTTTAGTCCAAACACCTTATCACAAACTAACTTCCAACCGTTTTCTAAACTCAGAAGGTTCATCTCATGAGGGCTACAAGCATTTGCATACATTGCTACCTCATTTTCCCTAGTAGTCAATAAGATTCGACTTCCATTGTTGTAATTAGGAAATATTCCTCTTATACTATCCCAATCATCCCTACTCCAAATATCATCAACAACAAGGTATCTTTGATCCTTAAGGTTCTTTTGCACCAAGTCAGCTAACTCATTGTCATCCATCTTATCAGTCTTTTGCATTCACAATATCCGTTTTCTTTGAAATGCAACGTAAAGCTTCTAACAATACATTTCTACATTGAAATTCTCGAGATATTGTAACCCAAGCAAGAATTAGGTTTATGTGATAATTCGAAATGAATTAGGTTTCTATTATACAGTGAATATGTGGGTATGTACACTTAAATATGTTTGGTTCATGTCATATTATATAAATCACTTAGTTATTCTATCCTCACATAAATAAATAGCTGGTGATAGTTTTGGAAACTCGAAAACTCTACAACTCGTACATGTAATTATTTCACATTTCTGGTGACATTTCATAGGTTCAACATCAATGTCAAAAAAAAAAAAAAACAGAATACATTCTCTATTAAGCATATTTATATATATACTTCTTTCTGTTCTTCGATATATTTTCAAATTTATGAGAAAAAATCACATGTTTTTCATGTACAAGTGTTTAGTCACATTTCTGGAGTAAGATCAAGCTGCTTTCTCAATTGCTTCTATGCAGTCTACGACCGATGCCTTGTTTGTCATTGCCGCTATTAGGGCTTCATGAAGCTTGCTATTATTTTTCAGTAGTGAAGCAGCAAATAAGACCTGCAAAAATTGAATCAGACAAACTAATGGTCTTGCTTGGATTTACTTGCAACATTATAATCAATGTCTTCGTTTAGCTTAGAAGTGGCAAAAGCAAACAATCTACGTGTGGTATGCATCTTGAATTTTGTATATGTTTGTATGTTAGAAATATGTGATCATCTCATCACATACTTTTACTTTTAATTATGTAGTTATATTATGTCTCACCACCTCTTGTGATGTGCTCTGATACCATGTTGAAGTGTGTGATGATTTCATATAAAAGCTTAAACTACTAGAGACTAAGACACTTTTAATTGACTTAATTATGTTATATATTTCAATAGTTTGTGTATATTTATCACAGTATGTGTTCGGTTTTAGACTCACCGCCCATCTTGTAAGGTTCTGCTGCTGGTCTTTGCTAAGCGACGGCTTGCTCCTGTTT</genome_strand>
        <mrna_strand>CGGGCCCCCCTCGAGTTTTTTTTTTTTCTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTCTCTATTAAGCATATTTATATATATACTTCTTTCTGTTCTTCGATATATTTTCAAATTTATGAGAAAAAATCACATGTTTTTCATGTACAAGTGTTTAGTCACATTTCTGGAGTAAGATCAAGCTGCTTTCTCAATTGCTTCTATGCAGTCTACGACCGATGCCTTGTTTGTCATTGCCGCTATTAGGGCTTCATGAAGCTTGCTATTATTTTTCAGTAGTGAAGCAGCAAATAAGACCTGCAAAAATTGAATCAGACAAACTAATGGTCTTGCTTGGATTTACTTGCAACATTATAATCAATGTCTTCGTTTAGCTTAGAAGTGGCAAAAGCAAACAATCTACGTGTGGTATGCATCTTGAATTTTGTATATGTTTGTATGTTAGAAATATGTGATCATCTCATCACATACTTTTACTTTTAATTATGTAGTTATATTATGTCTCACCACCTCTTGTGATGTGCTCTGATACCATGTTGAAGTGTGTGATGATTTCATATAAAAGCTTAAACTACTAGAGACTAAGACACTTTTAATTGACTTAATTATGTTATATATTTCAATAGTTTGTGTATATTTATCACAGTATGTGTTCGGTTTTAGACTCACCGCCCATCTTGTAAGGTTCTGCTGCTGGTCTTTGCTAAGCGACGGCTTGCTCCTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412187" ref_strand="-" ref_description="SGN-E412187 [STM-15-J24]">
      <seq>attttcatccttttttcctgattaccaggagagaatcgccagacatgaagcagctcatttcttagtttcctacctaatcggtgttccgatccttggatattcactggatattgggaaagagcatgtcaatttaattgatgaaaggttggaaaagcttatatacagtgggcagcttgactcaaaagaactcgacaggttggcagtggtagcgatggccgggctagcagcagaagggctaaagtatgataaagttgttggtcaatcagctgaccttttcactcttcagagatttctaaacaggagcaagccgtcgcttagcaaagatcagcaacagaaccttacaagatgggcggttttatttgctgcttctctactgaaaaacaatagcaagcttcatgaagccctaatagcggcaatgacaaacaaggcatcggtcgtagaatgcatagaagcaattgagaaagcagcttgatcttactccagaaatgtgactaaacacttgtacatgaaaaacatgtgtttttttctcataaatttgaaaatatatcgaggaacagaaaggaagtatatatataaacatgcttaatagaggaatgtattctatttttttgacattgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="86336" stop="83865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86036" g_stop="85972" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85741" g_stop="85612" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="195" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85033" g_stop="84943" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="286" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.522" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84858" g_stop="84793" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="352" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84792" i_stop="84421" i_length="372">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84420" g_stop="84165" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="610" r_length="258" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="618" polyA_stop="628"/>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E412187" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412187" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86036" e_stop="85972"/>
          <exon e_start="85741" e_stop="85612"/>
          <exon e_start="85033" e_stop="84943"/>
          <exon e_start="84858" e_stop="84793"/>
          <exon e_start="84420" e_stop="84165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAGGTTTAGTGTACACTATCTTGGAGTTAAATTGCCCTTTTTCTGGAGCCATTAATAAAAAGAAACTGTTGCCCTTTGTCTTCACAGAGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCGGTGAGTCTAAAACCGAACACATACTGTGATAAATATACACAAACTATTGAAATATATAACATAATTAAGTCAATTAAAAGTGTCTTAGTCTCTAGTAGTTTAAGCTTTTATATGAAATCATCACACACTTCAACATGGTATCAGAGCACATCACAAGAGGTGGTGAGACATAATATAACTACATAATTAAAAGTAAAAGTATGTGATGAGATGATCACATATTTCTAACATACAAACATATACAAAATTCAAGATGCATACCACACGTAGATTGTTTGCTTTTGCCACTTCTAAGCTAAACGAAGACATTGATTATAATGTTGCAAGTAAATCCAAGCAAGACCATTAGTTTGTCTGATTCAATTTTTGCAGGTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATCGGTCGTAGACTGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAGAAATGTGACTAAACACTTGTACATGAAAAACATGTGATTTTTTCTCATAAATTTGAAAATATATCGAAGAACAGAAA-GAAGTATATATATAAATATGCTTAATAGA-GAATGTATTCTGTTTTTTT</genome_strand>
        <mrna_strand>ATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG......................................................................................................................................................................................................................................TTTCCTACCTAATCGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAGCTTATATACAGTGGGCAGCTTGACTCAAAAGAACTCGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTTGGTCAATCAGCTGACCTTTTCACTCTTCAG....................................................................................AGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGATCAGCAACAGAACCTTACAAGATGGGCG....................................................................................................................................................................................................................................................................................................................................................................................GTTTTATTTGCTGCTTCTCTACTGAAAAACAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATCGGTCGTAGAATGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAGAAATGTGACTAAACACTTGTACATGAAAAACATGTGTTTTTTTCTCATAAATTTGAAAATATATCGAGGAACAGAAAGGAAGTATATATATAAACATGCTTAATAGAGGAATGTATTCTATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344807" ref_strand="+" ref_description="SGN-E344807 [cTOF-21-N24]">
      <seq>atgcaggcagcttttctgtttacagtggtaggcacaactgggtttttgggagttcttgcagggcaacttcctggtgattggggtttcttcgttccatacttgattgggagcatatctttagtagttttgggaatcggaagtacttccccagcgtcgttatggctcattcttttattcattatgtaggctccttcaggccgccattgatggattttcatccttttttcctgattaccaggagagaatcgccagacatgaagcagctcatttcttagtttcctacctaataggtgttccgatccttggatattcactggatattgggaaagagcatgtcaatttaattgatgaaaggttggaaaaacttatctacagtggccagcttgactcaaaagaactcgacagattggcagtggtagcgatggccgggctagcagcagaagggctaaagtatgataaagttgtcggtcaatcagctgaccttttcactcttcagagatttctaaacaggagcaagccgtcgcttagcaaagaccagcagcagaaccttacaagatggggcggtcttatttgctgcttcactactgaaaaataatagcaagcttcatgaagccctaatagcggcaatgacaaacaaggcatncggtcgtagactgcatagaagcaattgagaaagcagcttgatcttactccaaaaatgtgactaaacacttgtacatgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="87581" stop="83960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87281" g_stop="87207" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86254" g_stop="86178" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="152" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86177" i_stop="86095" i_length="83">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86094" g_stop="85972" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="275" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85612" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="405" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85033" g_stop="84943" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="496" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.522" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84858" g_stop="84793" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="563" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="84792" i_stop="84421" i_length="372">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="84420" g_stop="84260" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="725" r_length="162" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E344807" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87281" e_stop="87207"/>
          <exon e_start="86254" e_stop="86178"/>
          <exon e_start="86094" e_stop="85972"/>
          <exon e_start="85741" e_stop="85612"/>
          <exon e_start="85033" e_stop="84943"/>
          <exon e_start="84858" e_stop="84793"/>
          <exon e_start="84420" e_stop="84260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAGGCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGTGTATGTTCTCTTACTATCCTACTTTTCTGCTGTTCATTGTCCTATTTGTTTAACTCTGAAGTTTCATATTACATCTAAACTGTGGTTTATAAGCCTCATTCTCCCTGTTAAGTTTGCAAATAACGCACTGGATATGGGGCCTGAGTCTTTCATTTGGTTCTATTGTTATAGTCAATCTAGATAACTATATCTAGTTTGGTTTCGTGGGATTACAATCTCTTGATTTATTATCTGGATGTAAACCAAGTTGACAATCCTAAGAGGTGTTGGGGTGGTATTGTAGTTCAACACCCCACGTCTTTCTAACTACTGACCACTTGTTTAATAGTGTGAATAACCCTATGTTGCTCAGACTCTTCAAAAATGCCAAAGGATGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGTGCGGCATCAAAAGTGGAGAGTCCGCGCAACTAAGGAATCACCTCATCGAAAAGGTTAATTTGTTAAATAGACAAAAGTTTTTGTTTGTTCTTTACAAATTAAGATGTCTCACACCCAAGGGTGTGACTAAGTGGTCAATGAAGTGAGTTGCACGGAGGCAAAAAGCACTAGGTGGTTCTTTCCATTTTGTCACCAAGCCTTGGTGGGTAGAATACCCTCTATGCTTGTAGCAGGAACTCCATGAAATTAGTCGAGAAGAGTAATAACATGTTCCCATATGTCTGCACCAGAACATTTTTATTCGGAACCTATATAAAGATATCACCGATGTATTTTGTGTCGACATAGAAGTACTAGTGCGGGTTATTCGCGAAAGTGTAACAATGCACACAATTCTCAGATAATTTTGTTCGCCTTGGTGTTACTCCAAAACCAAGATGGGTTGTGAAGTACAGTGATGTTACTGTGTATCTGTATAGAACATATACATGCAGGTCACATTGTTGATTCTTTCTTTATGTTTTCAGGATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAGGTTTAGTGTACACTATCTTGGAGTTAAATTGCCCTTTTTCTGGAGCCATTAATAAAAAGAAACTGTTGCCCTTTGTCTTCACAGAGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGAT-GGGCGGTGAGTCTAAAACCGAACACATACTGTGATAAATATACACAAACTATTGAAATATATAACATAATTAAGTCAATTAAAAGTGTCTTAGTCTCTAGTAGTTTAAGCTTTTATATGAAATCATCACACACTTCAACATGGTATCAGAGCACATCACAAGAGGTGGTGAGACATAATATAACTACATAATTAAAAGTAAAAGTATGTGATGAGATGATCACATATTTCTAACATACAAACATATACAAAATTCAAGATGCATACCACACGTAGATTGTTTGCTTTTGCCACTTCTAAGCTAAACGAAGACATTGATTATAATGTTGCAAGTAAATCCAAGCAAGACCATTAGTTTGTCTGATTCAATTTTTGCAGGTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCAT-CGGTCGTAGACTGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAGAAATGTGACTAAACACTTGTACATGAAAAA</genome_strand>
        <mrna_strand>ATGCAGGCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGC...................................................................................GTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG......................................................................................................................................................................................................................................TTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAG....................................................................................AGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGGCG....................................................................................................................................................................................................................................................................................................................................................................................GTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATNCGGTCGTAGACTGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAAAAATGTGACTAAACACTTGTACATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736281" ref_strand="+" ref_description="SGN-E736281 [LC05AC08]">
      <seq>ccgttaaattctacatcatctctcttcactgcgccttctcaatttttagtacaatgtaataatccattaattatttctggaaaattgagcttcaaaattcgagcttcagcagcttcttcttcttctccttcatcaactggtgttgtcgatctatccactctccgaaccgccatttctaagacatctcttagagagctgacaactctcggaataaagaacgcagagaaccttgcaatcccaagtgtcagaaatgatgcagcttttctgtttacagtggtaggcacaactgggtttttgggagttcttgcagggcaacttcctggtgattggggtttcttcgttccatacttgattgggagcatatctttagtagttttgggaatcggaagtacttccccagcgctccttcaggccgccattgatggattttcatccttttttcctgattaccaggagagaatcgccagacatgaagcagctcatttcttagtttcctacctaataggtgttccgatccttggatattcactggatattgggaaagagcatgtcaatttaattgatgaaaggttggaaaaacttatctacagtggccagcttgactcaaaagaactcgacagattggcagtggtagcgatggccgggctagcagcagaagggctaaagtatgataaagttgtcggtcaatcagctgaccttttcactcttcagagatttctaaacaggagcaagccgtcgcttagcaaagaccagcagcagaaccttacaagatgggcggtcttatttgctgcttcactactgaaaaataatagcaagcttcatgaagccctaatagcggcaatgacaaacaaggcatcggtcgtagactgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="88983" stop="84026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88685" g_stop="88506" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88505" i_stop="87752" i_length="754">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87751" g_stop="87677" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="255" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87676" i_stop="87276" i_length="401">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87275" g_stop="87207" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="324" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86254" g_stop="86178" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="401" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86177" i_stop="86061" i_length="117">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86060" g_stop="85972" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="490" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85741" g_stop="85612" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="620" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85033" g_stop="84943" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="711" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.522" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="84858" g_stop="84793" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="777" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="84792" i_stop="84421" i_length="372">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="84420" g_stop="84326" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="872" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E736281" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88685" e_stop="88506"/>
          <exon e_start="87751" e_stop="87677"/>
          <exon e_start="87275" e_stop="87207"/>
          <exon e_start="86254" e_stop="86178"/>
          <exon e_start="86060" e_stop="85972"/>
          <exon e_start="85741" e_stop="85612"/>
          <exon e_start="85033" e_stop="84943"/>
          <exon e_start="84858" e_stop="84793"/>
          <exon e_start="84420" e_stop="84326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAGGTACATTCCCTGTTTTTAATCGAAAATTTTAATCTTCTCTCCATTTTGTGCGTATTATAATTGTTGTCATTTTTGAGGTTTGTGTCGGTAATTTTTTTTTGGATGGAAAGAAAATTTGCCGCCGCTATCTTTTGGGACACATAGGAGTGAAAACCCTGCTAAATAATTAAGACATAATACATGAACATGAGACACAAGTAGGGTGTGCATAAGTAATGTTTAAACTCGTGTAAAATTGAACAAATAGATACATAACAATTTTGTGTCCTACGTGGTGATCTATGTGTGTACTACCACATAAGACAAGTGTGTCTACTTATTTAATTTTGTATAAGTTTAAGTGTCTGCTAGTGTATTCTCTGATTTGGAGCACATAGTTGTTGGTTGAAACCAAGTTAAGGATCATGTTTATGTATTATATCAATAATTAATGATGCTCCAATTTAGATATGGAACTCGCAAATAAGTGATGTTTGCAGTGTCTTTTTTTTTTTGGCAATTACTCCTAACTGTTTTATGTGCATATTTTCTTGATTGTAGAAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACGGTCAGTTTTCATTTAAAATGTGAAAAGACCAATGTGTATCTATCTGTTATCTAATTTATTTGATTAGCACACATTGTGACAATAATTCTCTTAATGGTCTTAAAATTTTCTGTTGCAGACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGATGTAAGTTTCTTGATGAAATTTGTATTGTTATTACGTTGATGACAGTAGCTCTCGATTCGGATATTGTTCTGTATTCTGATTGAAGAGAACTGTATGTTCACATGGGTGCGATAACTAAGGGGAATATTTGAGCTAACGTCGTGTTTATGGCACATGTATTGTTCATCTGTTTCATACACTGGAACATTGGTATCTCTACGATCATGAAATGAATATCTGACTACACATTTATTACATTTCTTTCGTGTCCCTACAAATGATTTCATGGTTCCAATTGTTGTTACTTGGAACATCAAAAGTTGTTTGACAACGGATGATTAATGTGGTTATGTCTTTTTCATTTGACTGTTATGGACTTCGTTATTAAATCTGTTTGATACTGATTTCCTTCAGTGATGCAGGCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGTGTATGTTCTCTTACTATCCTACTTTTCTGCTGTTCATTGTCCTATTTGTTTAACTCTGAAGTTTCATATTACATCTAAACTGTGGTTTATAAGCCTCATTCTCCCTGTTAAGTTTGCAAATAACGCACTGGATATGGGGCCTGAGTCTTTCATTTGGTTCTATTGTTATAGTCAATCTAGATAACTATATCTAGTTTGGTTTCGTGGGATTACAATCTCTTGATTTATTATCTGGATGTAAACCAAGTTGACAATCCTAAGAGGTGTTGGGGTGGTATTGTAGTTCAACACCCCACGTCTTTCTAACTACTGACCACTTGTTTAATAGTGTGAATAACCCTATGTTGCTCAGACTCTTCAAAAATGCCAAAGGATGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGTGCGGCATCAAAAGTGGAGAGTCCGCGCAACTAAGGAATCACCTCATCGAAAAGGTTAATTTGTTAAATAGACAAAAGTTTTTGTTTGTTCTTTACAAATTAAGATGTCTCACACCCAAGGGTGTGACTAAGTGGTCAATGAAGTGAGTTGCACGGAGGCAAAAAGCACTAGGTGGTTCTTTCCATTTTGTCACCAAGCCTTGGTGGGTAGAATACCCTCTATGCTTGTAGCAGGAACTCCATGAAATTAGTCGAGAAGAGTAATAACATGTTCCCATATGTCTGCACCAGAACATTTTTATTCGGAACCTATATAAAGATATCACCGATGTATTTTGTGTCGACATAGAAGTACTAGTGCGGGTTATTCGCGAAAGTGTAACAATGCACACAATTCTCAGATAATTTTGTTCGCCTTGGTGTTACTCCAAAACCAAGATGGGTTGTGAAGTACAGTGATGTTACTGTGTATCTGTATAGAACATATACATGCAGGTCACATTGTTGATTCTTTCTTTATGTTTTCAGGATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAGGTTTAGTGTACACTATCTTGGAGTTAAATTGCCCTTTTTCTGGAGCCATTAATAAAAAGAAACTGTTGCCCTTTGTCTTCACAGAGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCGGTGAGTCTAAAACCGAACACATACTGTGATAAATATACACAAACTATTGAAATATATAACATAATTAAGTCAATTAAAAGTGTCTTAGTCTCTAGTAGTTTAAGCTTTTATATGAAATCATCACACACTTCAACATGGTATCAGAGCACATCACAAGAGGTGGTGAGACATAATATAACTACATAATTAAAAGTAAAAGTATGTGATGAGATGATCACATATTTCTAACATACAAACATATACAAAATTCAAGATGCATACCACACGTAGATTGTTTGCTTTTGCCACTTCTAAGCTAAACGAAGACATTGATTATAATGTTGCAAGTAAATCCAAGCAAGACCATTAGTTTGTCTGATTCAATTTTTGCAGGTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATCGGTCGTAGACTGCAT</genome_strand>
        <mrna_strand>CCGTTAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGC.....................................................................................................................GCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG......................................................................................................................................................................................................................................TTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAG....................................................................................AGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCG....................................................................................................................................................................................................................................................................................................................................................................................GTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATCGGTCGTAGACTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735354" ref_strand="+" ref_description="SGN-E735354 [LC01AG06]">
      <seq>cgttaattctacatcatctctcttcactgcgccttctcaatttttagtacaatgtaataatccattaattatttctggaaaattgagcttcaaaattcgagcttcagcagcttcttcttcttctccttcatcaactggtgttgtcgatctatccactctccgaaccgccatttctaagacatctcttagagagctgacaactctcggaataaagaacgcagagaaccttgcaatcccaagtgtcagaaatgatgcagcttttctgtttacagtggtaggcacaactgggtttttgggagttcttgcagggcaacttcctggtgattggggtttcttcgttccatacttgattgggagcatatctttagtagttttgggaatcggaagtacttccccagcgctccttcaggccgccattgatggattttcatccttttttcctgattaccaggagagaatcgccagacatgaagcagctcatttcttagtttcctacctaataggtgttccgatccttggatattcactggatattgggaaagagcatgtcaatttaattgatgaaaggttggaaaaacttatctacagtggccagcttgactcaaaagaactcgacagattggcagtggtagcgatggccgggctagcagcagaagggctaaagtatgataaagttgtcggtcaatcagctgaccttttcactcttcagagatttctaaacaggagcaagccgtcgcttagcaaagaccagcagcagaaccttacaagatgggcggtcttatttgctgcttcactactgaaaaataatagcaagcttcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="88979" stop="84074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88684" g_stop="88506" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88505" i_stop="87752" i_length="754">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87751" g_stop="87677" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="253" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87676" i_stop="87276" i_length="401">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87275" g_stop="87207" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="322" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86254" g_stop="86178" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="399" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86177" i_stop="86061" i_length="117">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86060" g_stop="85972" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="488" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85741" g_stop="85612" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="618" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85033" g_stop="84943" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="709" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.522" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="84858" g_stop="84793" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="775" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="84792" i_stop="84421" i_length="372">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="84420" g_stop="84374" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="822" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E735354" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88684" e_stop="88506"/>
          <exon e_start="87751" e_stop="87677"/>
          <exon e_start="87275" e_stop="87207"/>
          <exon e_start="86254" e_stop="86178"/>
          <exon e_start="86060" e_stop="85972"/>
          <exon e_start="85741" e_stop="85612"/>
          <exon e_start="85033" e_stop="84943"/>
          <exon e_start="84858" e_stop="84793"/>
          <exon e_start="84420" e_stop="84374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAGGTACATTCCCTGTTTTTAATCGAAAATTTTAATCTTCTCTCCATTTTGTGCGTATTATAATTGTTGTCATTTTTGAGGTTTGTGTCGGTAATTTTTTTTTGGATGGAAAGAAAATTTGCCGCCGCTATCTTTTGGGACACATAGGAGTGAAAACCCTGCTAAATAATTAAGACATAATACATGAACATGAGACACAAGTAGGGTGTGCATAAGTAATGTTTAAACTCGTGTAAAATTGAACAAATAGATACATAACAATTTTGTGTCCTACGTGGTGATCTATGTGTGTACTACCACATAAGACAAGTGTGTCTACTTATTTAATTTTGTATAAGTTTAAGTGTCTGCTAGTGTATTCTCTGATTTGGAGCACATAGTTGTTGGTTGAAACCAAGTTAAGGATCATGTTTATGTATTATATCAATAATTAATGATGCTCCAATTTAGATATGGAACTCGCAAATAAGTGATGTTTGCAGTGTCTTTTTTTTTTTGGCAATTACTCCTAACTGTTTTATGTGCATATTTTCTTGATTGTAGAAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACGGTCAGTTTTCATTTAAAATGTGAAAAGACCAATGTGTATCTATCTGTTATCTAATTTATTTGATTAGCACACATTGTGACAATAATTCTCTTAATGGTCTTAAAATTTTCTGTTGCAGACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGATGTAAGTTTCTTGATGAAATTTGTATTGTTATTACGTTGATGACAGTAGCTCTCGATTCGGATATTGTTCTGTATTCTGATTGAAGAGAACTGTATGTTCACATGGGTGCGATAACTAAGGGGAATATTTGAGCTAACGTCGTGTTTATGGCACATGTATTGTTCATCTGTTTCATACACTGGAACATTGGTATCTCTACGATCATGAAATGAATATCTGACTACACATTTATTACATTTCTTTCGTGTCCCTACAAATGATTTCATGGTTCCAATTGTTGTTACTTGGAACATCAAAAGTTGTTTGACAACGGATGATTAATGTGGTTATGTCTTTTTCATTTGACTGTTATGGACTTCGTTATTAAATCTGTTTGATACTGATTTCCTTCAGTGATGCAGGCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGTGTATGTTCTCTTACTATCCTACTTTTCTGCTGTTCATTGTCCTATTTGTTTAACTCTGAAGTTTCATATTACATCTAAACTGTGGTTTATAAGCCTCATTCTCCCTGTTAAGTTTGCAAATAACGCACTGGATATGGGGCCTGAGTCTTTCATTTGGTTCTATTGTTATAGTCAATCTAGATAACTATATCTAGTTTGGTTTCGTGGGATTACAATCTCTTGATTTATTATCTGGATGTAAACCAAGTTGACAATCCTAAGAGGTGTTGGGGTGGTATTGTAGTTCAACACCCCACGTCTTTCTAACTACTGACCACTTGTTTAATAGTGTGAATAACCCTATGTTGCTCAGACTCTTCAAAAATGCCAAAGGATGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGTGCGGCATCAAAAGTGGAGAGTCCGCGCAACTAAGGAATCACCTCATCGAAAAGGTTAATTTGTTAAATAGACAAAAGTTTTTGTTTGTTCTTTACAAATTAAGATGTCTCACACCCAAGGGTGTGACTAAGTGGTCAATGAAGTGAGTTGCACGGAGGCAAAAAGCACTAGGTGGTTCTTTCCATTTTGTCACCAAGCCTTGGTGGGTAGAATACCCTCTATGCTTGTAGCAGGAACTCCATGAAATTAGTCGAGAAGAGTAATAACATGTTCCCATATGTCTGCACCAGAACATTTTTATTCGGAACCTATATAAAGATATCACCGATGTATTTTGTGTCGACATAGAAGTACTAGTGCGGGTTATTCGCGAAAGTGTAACAATGCACACAATTCTCAGATAATTTTGTTCGCCTTGGTGTTACTCCAAAACCAAGATGGGTTGTGAAGTACAGTGATGTTACTGTGTATCTGTATAGAACATATACATGCAGGTCACATTGTTGATTCTTTCTTTATGTTTTCAGGATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAGGTTTAGTGTACACTATCTTGGAGTTAAATTGCCCTTTTTCTGGAGCCATTAATAAAAAGAAACTGTTGCCCTTTGTCTTCACAGAGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCGGTGAGTCTAAAACCGAACACATACTGTGATAAATATACACAAACTATTGAAATATATAACATAATTAAGTCAATTAAAAGTGTCTTAGTCTCTAGTAGTTTAAGCTTTTATATGAAATCATCACACACTTCAACATGGTATCAGAGCACATCACAAGAGGTGGTGAGACATAATATAACTACATAATTAAAAGTAAAAGTATGTGATGAGATGATCACATATTTCTAACATACAAACATATACAAAATTCAAGATGCATACCACACGTAGATTGTTTGCTTTTGCCACTTCTAAGCTAAACGAAGACATTGATTATAATGTTGCAAGTAAATCCAAGCAAGACCATTAGTTTGTCTGATTCAATTTTTGCAGGTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGA</genome_strand>
        <mrna_strand>CGTTAA-TTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGC.....................................................................................................................GCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG......................................................................................................................................................................................................................................TTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAG....................................................................................AGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCG....................................................................................................................................................................................................................................................................................................................................................................................GTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466600" ref_strand="+" ref_description="SGN-E466600 [cPRO-25-A12]">
      <seq>aaagaacgcagagaaccttgcaatcccaagtgtcagaaatgatgcagcttttctgtttacggtggtaggcacaacagggtttttgggagttcttgctggccaacttcctggtgattggggtttcttcgttccatacttgatcggaagcatatctttagtagttttgggaatcggaagtacttccccagcgctccttcaggccgccattgatggattttcatccttttttcctgattaccaggagagaatcgccagacatgaagcagctcatttcttagtttcctacctaatcggtgttccgatccttggatattcactggatattgggaaagagcatgtcaatttaattgatgaaaggttggaaaagcttatatacagtgggcagcttgactcaaaagaactcgacaggttggcagtggtagcgatggccgggctagcagcagaagggctaaagtatgataaagttgttggtcaatcagctgaccttttcactcttcagagatttctaaacaggagcaagccgtcgcttagcaaagatcagcaacagaaccttacaagatgggcggttttatttgctgcttctctactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="88019" stop="84491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87719" g_stop="87677" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87676" i_stop="87276" i_length="401">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87275" g_stop="87207" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="112" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.955" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86254" g_stop="86178" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="189" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86177" i_stop="86061" i_length="117">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86060" g_stop="85972" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="278" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85741" g_stop="85612" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="408" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85033" g_stop="84943" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="499" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.522" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="84858" g_stop="84793" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="565" r_length="66" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E466600" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87719" e_stop="87677"/>
          <exon e_start="87275" e_stop="87207"/>
          <exon e_start="86254" e_stop="86178"/>
          <exon e_start="86060" e_stop="85972"/>
          <exon e_start="85741" e_stop="85612"/>
          <exon e_start="85033" e_stop="84943"/>
          <exon e_start="84858" e_stop="84793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGATGTAAGTTTCTTGATGAAATTTGTATTGTTATTACGTTGATGACAGTAGCTCTCGATTCGGATATTGTTCTGTATTCTGATTGAAGAGAACTGTATGTTCACATGGGTGCGATAACTAAGGGGAATATTTGAGCTAACGTCGTGTTTATGGCACATGTATTGTTCATCTGTTTCATACACTGGAACATTGGTATCTCTACGATCATGAAATGAATATCTGACTACACATTTATTACATTTCTTTCGTGTCCCTACAAATGATTTCATGGTTCCAATTGTTGTTACTTGGAACATCAAAAGTTGTTTGACAACGGATGATTAATGTGGTTATGTCTTTTTCATTTGACTGTTATGGACTTCGTTATTAAATCTGTTTGATACTGATTTCCTTCAGTGATGCAGGCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGTGTATGTTCTCTTACTATCCTACTTTTCTGCTGTTCATTGTCCTATTTGTTTAACTCTGAAGTTTCATATTACATCTAAACTGTGGTTTATAAGCCTCATTCTCCCTGTTAAGTTTGCAAATAACGCACTGGATATGGGGCCTGAGTCTTTCATTTGGTTCTATTGTTATAGTCAATCTAGATAACTATATCTAGTTTGGTTTCGTGGGATTACAATCTCTTGATTTATTATCTGGATGTAAACCAAGTTGACAATCCTAAGAGGTGTTGGGGTGGTATTGTAGTTCAACACCCCACGTCTTTCTAACTACTGACCACTTGTTTAATAGTGTGAATAACCCTATGTTGCTCAGACTCTTCAAAAATGCCAAAGGATGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGTGCGGCATCAAAAGTGGAGAGTCCGCGCAACTAAGGAATCACCTCATCGAAAAGGTTAATTTGTTAAATAGACAAAAGTTTTTGTTTGTTCTTTACAAATTAAGATGTCTCACACCCAAGGGTGTGACTAAGTGGTCAATGAAGTGAGTTGCACGGAGGCAAAAAGCACTAGGTGGTTCTTTCCATTTTGTCACCAAGCCTTGGTGGGTAGAATACCCTCTATGCTTGTAGCAGGAACTCCATGAAATTAGTCGAGAAGAGTAATAACATGTTCCCATATGTCTGCACCAGAACATTTTTATTCGGAACCTATATAAAGATATCACCGATGTATTTTGTGTCGACATAGAAGTACTAGTGCGGGTTATTCGCGAAAGTGTAACAATGCACACAATTCTCAGATAATTTTGTTCGCCTTGGTGTTACTCCAAAACCAAGATGGGTTGTGAAGTACAGTGATGTTACTGTGTATCTGTATAGAACATATACATGCAGGTCACATTGTTGATTCTTTCTTTATGTTTTCAGGATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAGGTTTAGTGTACACTATCTTGGAGTTAAATTGCCCTTTTTCTGGAGCCATTAATAAAAAGAAACTGTTGCCCTTTGTCTTCACAGAGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCG</genome_strand>
        <mrna_strand>AAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTTTTCTGTTTACGGTGGTAGGCACAACAGGGTTTTTGGGAGTTCTTGCTGGCCAACTTCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGGTTTCTTCGTTCCATACTTGATCGGAAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGC.....................................................................................................................GCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG......................................................................................................................................................................................................................................TTTCCTACCTAATCGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAGCTTATATACAGTGGGCAGCTTGACTCAAAAGAACTCGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTTGGTCAATCAGCTGACCTTTTCACTCTTCAG....................................................................................AGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGATCAGCAACAGAACCTTACAAGATGGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735576" ref_strand="+" ref_description="SGN-E735576 [LC02AG06]">
      <seq>attaaaaaaaaacataatatcatcaataaatgcaaaattctcaatttttaaaaaaatgtaatactccgttaattatttctggaaaattgagcttcaaaattcgagcttcagcagcttcttcttcttctccttcatcaactggtgttgtcgatctatccactctccgaaccgccatttctaagacatctcttagagagctgacaactctcggaataaagaacgcagagaaccttgcaatcccaagtgtcagaaatgatgcagcttttctgtttacagtggtaggcacaactgggtttttgggagttcttgcagggcaacttcctggtgattggggtttcttcgttccatacttgattgggagcatatctctagtagttttgggaatcggaagtacttccccagcgctccttcaggccgccattgatggattttcatccttttttcctgattaccaggagagaatcgccagacatgaagcagctcatttcttagtttcctacctaataggtgttccgatccttggatattcactggatattgggaaagagcatgtcaatttaattgatgaaaggttggaaaaacttatctacagtggccagcttgactcaaaagaactcgacagattggcagtggtagcgatggccgggctagcagcagaagggctaaagtatgataaagttgtcgggcaatcacctgacctttttactcttcagaaatttctaaacaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="88950" stop="84643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88650" g_stop="88506" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="182" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88505" i_stop="87752" i_length="754">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87751" g_stop="87677" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="257" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87676" i_stop="87276" i_length="401">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87275" g_stop="87207" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="326" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86254" g_stop="86178" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="403" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86177" i_stop="86061" i_length="117">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86060" g_stop="85972" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="492" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85741" g_stop="85612" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="622" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85033" g_stop="84943" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="713" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.522" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="84858" g_stop="84842" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="730" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E735576" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88650" e_stop="88506"/>
          <exon e_start="87751" e_stop="87677"/>
          <exon e_start="87275" e_stop="87207"/>
          <exon e_start="86254" e_stop="86178"/>
          <exon e_start="86060" e_stop="85972"/>
          <exon e_start="85741" e_stop="85612"/>
          <exon e_start="85033" e_stop="84943"/>
          <exon e_start="84858" e_stop="84842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAGGTACATTCCCTGTTTTTAATCGAAAATTTTAATCTTCTCTCCATTTTGTGCGTATTATAATTGTTGTCATTTTTGAGGTTTGTGTCGGTAATTTTTTTTTGGATGGAAAGAAAATTTGCCGCCGCTATCTTTTGGGACACATAGGAGTGAAAACCCTGCTAAATAATTAAGACATAATACATGAACATGAGACACAAGTAGGGTGTGCATAAGTAATGTTTAAACTCGTGTAAAATTGAACAAATAGATACATAACAATTTTGTGTCCTACGTGGTGATCTATGTGTGTACTACCACATAAGACAAGTGTGTCTACTTATTTAATTTTGTATAAGTTTAAGTGTCTGCTAGTGTATTCTCTGATTTGGAGCACATAGTTGTTGGTTGAAACCAAGTTAAGGATCATGTTTATGTATTATATCAATAATTAATGATGCTCCAATTTAGATATGGAACTCGCAAATAAGTGATGTTTGCAGTGTCTTTTTTTTTTTGGCAATTACTCCTAACTGTTTTATGTGCATATTTTCTTGATTGTAGAAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACGGTCAGTTTTCATTTAAAATGTGAAAAGACCAATGTGTATCTATCTGTTATCTAATTTATTTGATTAGCACACATTGTGACAATAATTCTCTTAATGGTCTTAAAATTTTCTGTTGCAGACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGATGTAAGTTTCTTGATGAAATTTGTATTGTTATTACGTTGATGACAGTAGCTCTCGATTCGGATATTGTTCTGTATTCTGATTGAAGAGAACTGTATGTTCACATGGGTGCGATAACTAAGGGGAATATTTGAGCTAACGTCGTGTTTATGGCACATGTATTGTTCATCTGTTTCATACACTGGAACATTGGTATCTCTACGATCATGAAATGAATATCTGACTACACATTTATTACATTTCTTTCGTGTCCCTACAAATGATTTCATGGTTCCAATTGTTGTTACTTGGAACATCAAAAGTTGTTTGACAACGGATGATTAATGTGGTTATGTCTTTTTCATTTGACTGTTATGGACTTCGTTATTAAATCTGTTTGATACTGATTTCCTTCAGTGATGCAGGCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGTGTATGTTCTCTTACTATCCTACTTTTCTGCTGTTCATTGTCCTATTTGTTTAACTCTGAAGTTTCATATTACATCTAAACTGTGGTTTATAAGCCTCATTCTCCCTGTTAAGTTTGCAAATAACGCACTGGATATGGGGCCTGAGTCTTTCATTTGGTTCTATTGTTATAGTCAATCTAGATAACTATATCTAGTTTGGTTTCGTGGGATTACAATCTCTTGATTTATTATCTGGATGTAAACCAAGTTGACAATCCTAAGAGGTGTTGGGGTGGTATTGTAGTTCAACACCCCACGTCTTTCTAACTACTGACCACTTGTTTAATAGTGTGAATAACCCTATGTTGCTCAGACTCTTCAAAAATGCCAAAGGATGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGTGCGGCATCAAAAGTGGAGAGTCCGCGCAACTAAGGAATCACCTCATCGAAAAGGTTAATTTGTTAAATAGACAAAAGTTTTTGTTTGTTCTTTACAAATTAAGATGTCTCACACCCAAGGGTGTGACTAAGTGGTCAATGAAGTGAGTTGCACGGAGGCAAAAAGCACTAGGTGGTTCTTTCCATTTTGTCACCAAGCCTTGGTGGGTAGAATACCCTCTATGCTTGTAGCAGGAACTCCATGAAATTAGTCGAGAAGAGTAATAACATGTTCCCATATGTCTGCACCAGAACATTTTTATTCGGAACCTATATAAAGATATCACCGATGTATTTTGTGTCGACATAGAAGTACTAGTGCGGGTTATTCGCGAAAGTGTAACAATGCACACAATTCTCAGATAATTTTGTTCGCCTTGGTGTTACTCCAAAACCAAGATGGGTTGTGAAGTACAGTGATGTTACTGTGTATCTGTATAGAACATATACATGCAGGTCACATTGTTGATTCTTTCTTTATGTTTTCAGGATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAGGTTTAGTGTACACTATCTTGGAGTTAAATTGCCCTTTTTCTGGAGCCATTAATAAAAAGAAACTGTTGCCCTTTGTCTTCACAGAGATTTCTAAACAGGAG</genome_strand>
        <mrna_strand>TTCTCAATTTTTAAAAAAATGTAATACTCCGTTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTCTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGC.....................................................................................................................GCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG......................................................................................................................................................................................................................................TTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGGCAATCACCTGACCTTTTTACTCTTCAG....................................................................................AAATTTCTAAACAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731768" ref_strand="+" ref_description="SGN-E731768 [LA28AE11]">
      <seq>gtcaaattctacatcatctctcttcactgcgccttctcaatttttagtacaatgtaataatccattaattatttctggaaaattgagcttcaaaattcgagcttcagcagcttcttcttcttctccttcatcaactggtgttgtcgatctatccactctccgaaccgccatttctaagaaagatagtaatgccgtaaaagaggcgcttgatcagctagttgaaatcggttggtccaaaaaatggggttctcaaccatatgtgtcacgtcgaacgacatctcttagagagctgacaactctcggaataaagaacgcagagaaccttgcaatcccaagtgtcagaaatgatgcagcttttctgtttacagtggtaggcacaactgggtttttgggagttcttgcagggcaacttcctggtgattggggtttcttcgttccatacttgattgggagcatatctttagtagttttgggaatcggaagtacttccccagcgctccttcaggccgccattgatggattttcatccttttttcctgattaccaggagagaatcgccagacatgaagcagctcatttcttagtttcctacctaataggtgttccgatccttggatattcactggatattgggaaagagcatgtcaatttaattgatgaaaggttggaaaaacttatctacagtggccagcttgactcaaaagaactcgacagattggcagtggtagcgatggccgggctagcagcagaagggctaaagtatgataaagttgtcggtcaatcagctgaccttttcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="88983" stop="84648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88683" g_stop="88506" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88505" i_stop="87966" i_length="540">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87965" g_stop="87870" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="274" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87869" i_stop="87752" i_length="118">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87751" g_stop="87677" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="349" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87676" i_stop="87276" i_length="401">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87275" g_stop="87207" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="418" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86254" g_stop="86178" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="495" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86177" i_stop="86061" i_length="117">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86060" g_stop="85972" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="584" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85741" g_stop="85612" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="714" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="85033" g_stop="84948" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="800" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E731768" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88683" e_stop="88506"/>
          <exon e_start="87965" e_stop="87870"/>
          <exon e_start="87751" e_stop="87677"/>
          <exon e_start="87275" e_stop="87207"/>
          <exon e_start="86254" e_stop="86178"/>
          <exon e_start="86060" e_stop="85972"/>
          <exon e_start="85741" e_stop="85612"/>
          <exon e_start="85033" e_stop="84948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAGGTACATTCCCTGTTTTTAATCGAAAATTTTAATCTTCTCTCCATTTTGTGCGTATTATAATTGTTGTCATTTTTGAGGTTTGTGTCGGTAATTTTTTTTTGGATGGAAAGAAAATTTGCCGCCGCTATCTTTTGGGACACATAGGAGTGAAAACCCTGCTAAATAATTAAGACATAATACATGAACATGAGACACAAGTAGGGTGTGCATAAGTAATGTTTAAACTCGTGTAAAATTGAACAAATAGATACATAACAATTTTGTGTCCTACGTGGTGATCTATGTGTGTACTACCACATAAGACAAGTGTGTCTACTTATTTAATTTTGTATAAGTTTAAGTGTCTGCTAGTGTATTCTCTGATTTGGAGCACATAGTTGTTGGTTGAAACCAAGTTAAGGATCATGTTTATGTATTATATCAATAATTAATGATGCTCCAATTTAGATATGGAACTCGCAAATAAGTGATGTTTGCAGTGTCTTTTTTTTTTTGGCAATTACTCCTAACTGTTTTATGTGCATATTTTCTTGATTGTAGAAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACGGTCAGTTTTCATTTAAAATGTGAAAAGACCAATGTGTATCTATCTGTTATCTAATTTATTTGATTAGCACACATTGTGACAATAATTCTCTTAATGGTCTTAAAATTTTCTGTTGCAGACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGATGTAAGTTTCTTGATGAAATTTGTATTGTTATTACGTTGATGACAGTAGCTCTCGATTCGGATATTGTTCTGTATTCTGATTGAAGAGAACTGTATGTTCACATGGGTGCGATAACTAAGGGGAATATTTGAGCTAACGTCGTGTTTATGGCACATGTATTGTTCATCTGTTTCATACACTGGAACATTGGTATCTCTACGATCATGAAATGAATATCTGACTACACATTTATTACATTTCTTTCGTGTCCCTACAAATGATTTCATGGTTCCAATTGTTGTTACTTGGAACATCAAAAGTTGTTTGACAACGGATGATTAATGTGGTTATGTCTTTTTCATTTGACTGTTATGGACTTCGTTATTAAATCTGTTTGATACTGATTTCCTTCAGTGATGCAGGCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGTGTATGTTCTCTTACTATCCTACTTTTCTGCTGTTCATTGTCCTATTTGTTTAACTCTGAAGTTTCATATTACATCTAAACTGTGGTTTATAAGCCTCATTCTCCCTGTTAAGTTTGCAAATAACGCACTGGATATGGGGCCTGAGTCTTTCATTTGGTTCTATTGTTATAGTCAATCTAGATAACTATATCTAGTTTGGTTTCGTGGGATTACAATCTCTTGATTTATTATCTGGATGTAAACCAAGTTGACAATCCTAAGAGGTGTTGGGGTGGTATTGTAGTTCAACACCCCACGTCTTTCTAACTACTGACCACTTGTTTAATAGTGTGAATAACCCTATGTTGCTCAGACTCTTCAAAAATGCCAAAGGATGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGTGCGGCATCAAAAGTGGAGAGTCCGCGCAACTAAGGAATCACCTCATCGAAAAGGTTAATTTGTTAAATAGACAAAAGTTTTTGTTTGTTCTTTACAAATTAAGATGTCTCACACCCAAGGGTGTGACTAAGTGGTCAATGAAGTGAGTTGCACGGAGGCAAAAAGCACTAGGTGGTTCTTTCCATTTTGTCACCAAGCCTTGGTGGGTAGAATACCCTCTATGCTTGTAGCAGGAACTCCATGAAATTAGTCGAGAAGAGTAATAACATGTTCCCATATGTCTGCACCAGAACATTTTTATTCGGAACCTATATAAAGATATCACCGATGTATTTTGTGTCGACATAGAAGTACTAGTGCGGGTTATTCGCGAAAGTGTAACAATGCACACAATTCTCAGATAATTTTGTTCGCCTTGGTGTTACTCCAAAACCAAGATGGGTTGTGAAGTACAGTGATGTTACTGTGTATCTGTATAGAACATATACATGCAGGTCACATTGTTGATTCTTTCTTTATGTTTTCAGGATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTC</genome_strand>
        <mrna_strand>GTCAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACG......................................................................................................................ACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGC.....................................................................................................................GCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG......................................................................................................................................................................................................................................TTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248064" ref_strand="+" ref_description="SGN-E248064 [cLEF-47-H9]">
      <seq>ggcaccgtttgactttgcacaaagtttaagtaaaacgggaagacttttgaatcttgtcgtctataccaaaccttaggtatttgtgtggttgtaaattatttcattaagcgtaaaaaagtttttaatgttaggttgtttttagttattaaaaaaatgacattctttttgggacagactaagactaaaaaagaatggtgtcacataaattgtgacacaggagtacttgctttgaaaggctagaatgtaatgctttagctacgggtctggtccttcagaaccctataaaatgtcactaataagtacaaataactgattttgaagccagtaaatcaaataatttgtggtagaatttctaccacgaaccataatgttcaaatcctgtatctacctctgctagttatatgtaggtactttgtcagacatctgctgctatttatattttcacatgaagtatcattgcttctaaaattttcaccggaaacaaaaattatttactgagtagttacatttctcagattggcagtggtagcgatggccgggctagcagcagaagggctaaagtatgataaagttgtcggtcaatcagctgaccttttcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="85848" stop="84648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85548" g_stop="84948" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E248064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85548" e_stop="84948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTC</genome_strand>
        <mrna_strand>GGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537758" ref_strand="+" ref_description="SGN-E537758 [TUS-56-I10]">
      <seq>tctgtttacagtggtaggcacaactgggtttttgggagttcttgcagggcaacttcctggtgattggggtttcttcgttccatacttgattgggagcatatctttagtagttttgggaatcggaagtacttccccagcgtaagtaaagattttaggtgttcttctgatactaataatgcattatactatctattcagttgagctttttctactgcatgcaggtcgttatggctcattcttttattcattatgtaggctccttcaggccgccattgatggattttcatccttttttcctgattaccaggagagaatcgccagacatgaagcagctcatttcttaggtggcatcctgttttagttttcaatattttatacttttatttttatttggctatgataatgacatgagttgagcttaaatgaaacattgaagattcatataagacgaacctcgacaagttattgttgttatttggttatgataatgacatcgaggcatagttgttattgttgttgtgcttctgcggttccattaactttcctctattaagccgtacaatgtcaatttcagtttcctacctaataggtgttccgatccttggatattcactggatattgggaaagagcatgtcaatttaattgatgaaaggttggaaaaacttatctacagtggccagcttgactcaaaagaactcgacaggtatcgacttcaaaagaatctcttcttcaatcaattaattactccttctgtctcagtttatgcggcaccgtttgactttgcacaaagtttaagtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="87567" stop="85215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87267" g_stop="87207" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86254" g_stop="85515" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="801" r_length="740" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E537758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87267" e_stop="87207"/>
          <exon e_start="86254" e_stop="85515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGTGTATGTTCTCTTACTATCCTACTTTTCTGCTGTTCATTGTCCTATTTGTTTAACTCTGAAGTTTCATATTACATCTAAACTGTGGTTTATAAGCCTCATTCTCCCTGTTAAGTTTGCAAATAACGCACTGGATATGGGGCCTGAGTCTTTCATTTGGTTCTATTGTTATAGTCAATCTAGATAACTATATCTAGTTTGGTTTCGTGGGATTACAATCTCTTGATTTATTATCTGGATGTAAACCAAGTTGACAATCCTAAGAGGTGTTGGGGTGGTATTGTAGTTCAACACCCCACGTCTTTCTAACTACTGACCACTTGTTTAATAGTGTGAATAACCCTATGTTGCTCAGACTCTTCAAAAATGCCAAAGGATGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGTGCGGCATCAAAAGTGGAGAGTCCGCGCAACTAAGGAATCACCTCATCGAAAAGGTTAATTTGTTAAATAGACAAAAGTTTTTGTTTGTTCTTTACAAATTAAGATGTCTCACACCCAAGGGTGTGACTAAGTGGTCAATGAAGTGAGTTGCACGGAGGCAAAAAGCACTAGGTGGTTCTTTCCATTTTGTCACCAAGCCTTGGTGGGTAGAATACCCTCTATGCTTGTAGCAGGAACTCCATGAAATTAGTCGAGAAGAGTAATAACATGTTCCCATATGTCTGCACCAGAACATTTTTATTCGGAACCTATATAAAGATATCACCGATGTATTTTGTGTCGACATAGAAGTACTAGTGCGGGTTATTCGCGAAAGTGTAACAATGCACACAATTCTCAGATAATTTTGTTCGCCTTGGTGTTACTCCAAAACCAAGATGGGTTGTGAAGTACAGTGATGTTACTGTGTATCTGTATAGAACATATACATGCAGGTCACATTGTTGATTCTTTCTTTATGTTTTCAGGATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAA</genome_strand>
        <mrna_strand>TCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412186" ref_strand="+" ref_description="SGN-E412186 [STM-15-J24]">
      <seq>gtcaaattctgcatcatctctcttcactacgccttctcaatttttagtacaatgtaataatccatcaattatttctggaaaattgagcttcaaaattcgagcttcagcagcttcttcttctccttcatcaactggtgttgatttgtccaacctccaaaccgccatttctaagaaagatagtaatgccgtaaaagaggcgcttgatcagctagttgaaatcggttggtccaaaaagtggggttctcaaccatatgtgtcacgtcgaacgacatctcttagagagctgacaactctcggaataaagaacgcagagaaccttgcaatcccaagtgtcagaaatgatgcagcttttctgtttacggtggtaggcacaacagggtttttgggagttcttgctggccaacttcctggtgattggggtttcttcgttccatacttgatcggaagcatatctttagtagttntgggaatcggaagtacttccccagcgctccttcaggccgccattgatggattttcatccttttttcctgattaccaggagagaatcgccagacatgaagcagctcatttcttagtttcctacctaaatcgtgtcccgatccttggatattcactggatattgggaaagagcatgtcaatttaattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="88983" stop="85367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88683" g_stop="88506" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88505" i_stop="87966" i_length="540">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87965" g_stop="87870" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="268" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87869" i_stop="87752" i_length="118">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87751" g_stop="87677" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="343" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87676" i_stop="87276" i_length="401">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87275" g_stop="87207" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="412" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.955" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86254" g_stop="86178" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="489" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86177" i_stop="86061" i_length="117">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86060" g_stop="85972" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="578" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85741" g_stop="85667" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="653" r_length="75" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E412186" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88683" e_stop="88506"/>
          <exon e_start="87965" e_stop="87870"/>
          <exon e_start="87751" e_stop="87677"/>
          <exon e_start="87275" e_stop="87207"/>
          <exon e_start="86254" e_stop="86178"/>
          <exon e_start="86060" e_stop="85972"/>
          <exon e_start="85741" e_stop="85667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAGGTACATTCCCTGTTTTTAATCGAAAATTTTAATCTTCTCTCCATTTTGTGCGTATTATAATTGTTGTCATTTTTGAGGTTTGTGTCGGTAATTTTTTTTTGGATGGAAAGAAAATTTGCCGCCGCTATCTTTTGGGACACATAGGAGTGAAAACCCTGCTAAATAATTAAGACATAATACATGAACATGAGACACAAGTAGGGTGTGCATAAGTAATGTTTAAACTCGTGTAAAATTGAACAAATAGATACATAACAATTTTGTGTCCTACGTGGTGATCTATGTGTGTACTACCACATAAGACAAGTGTGTCTACTTATTTAATTTTGTATAAGTTTAAGTGTCTGCTAGTGTATTCTCTGATTTGGAGCACATAGTTGTTGGTTGAAACCAAGTTAAGGATCATGTTTATGTATTATATCAATAATTAATGATGCTCCAATTTAGATATGGAACTCGCAAATAAGTGATGTTTGCAGTGTCTTTTTTTTTTTGGCAATTACTCCTAACTGTTTTATGTGCATATTTTCTTGATTGTAGAAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACGGTCAGTTTTCATTTAAAATGTGAAAAGACCAATGTGTATCTATCTGTTATCTAATTTATTTGATTAGCACACATTGTGACAATAATTCTCTTAATGGTCTTAAAATTTTCTGTTGCAGACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGATGTAAGTTTCTTGATGAAATTTGTATTGTTATTACGTTGATGACAGTAGCTCTCGATTCGGATATTGTTCTGTATTCTGATTGAAGAGAACTGTATGTTCACATGGGTGCGATAACTAAGGGGAATATTTGAGCTAACGTCGTGTTTATGGCACATGTATTGTTCATCTGTTTCATACACTGGAACATTGGTATCTCTACGATCATGAAATGAATATCTGACTACACATTTATTACATTTCTTTCGTGTCCCTACAAATGATTTCATGGTTCCAATTGTTGTTACTTGGAACATCAAAAGTTGTTTGACAACGGATGATTAATGTGGTTATGTCTTTTTCATTTGACTGTTATGGACTTCGTTATTAAATCTGTTTGATACTGATTTCCTTCAGTGATGCAGGCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGTGTATGTTCTCTTACTATCCTACTTTTCTGCTGTTCATTGTCCTATTTGTTTAACTCTGAAGTTTCATATTACATCTAAACTGTGGTTTATAAGCCTCATTCTCCCTGTTAAGTTTGCAAATAACGCACTGGATATGGGGCCTGAGTCTTTCATTTGGTTCTATTGTTATAGTCAATCTAGATAACTATATCTAGTTTGGTTTCGTGGGATTACAATCTCTTGATTTATTATCTGGATGTAAACCAAGTTGACAATCCTAAGAGGTGTTGGGGTGGTATTGTAGTTCAACACCCCACGTCTTTCTAACTACTGACCACTTGTTTAATAGTGTGAATAACCCTATGTTGCTCAGACTCTTCAAAAATGCCAAAGGATGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGTGCGGCATCAAAAGTGGAGAGTCCGCGCAACTAAGGAATCACCTCATCGAAAAGGTTAATTTGTTAAATAGACAAAAGTTTTTGTTTGTTCTTTACAAATTAAGATGTCTCACACCCAAGGGTGTGACTAAGTGGTCAATGAAGTGAGTTGCACGGAGGCAAAAAGCACTAGGTGGTTCTTTCCATTTTGTCACCAAGCCTTGGTGGGTAGAATACCCTCTATGCTTGTAGCAGGAACTCCATGAAATTAGTCGAGAAGAGTAATAACATGTTCCCATATGTCTGCACCAGAACATTTTTATTCGGAACCTATATAAAGATATCACCGATGTATTTTGTGTCGACATAGAAGTACTAGTGCGGGTTATTCGCGAAAGTGTAACAATGCACACAATTCTCAGATAATTTTGTTCGCCTTGGTGTTACTCCAAAACCAAGATGGGTTGTGAAGTACAGTGATGTTACTGTGTATCTGTATAGAACATATACATGCAGGTCACATTGTTGATTCTTTCTTTATGTTTTCAGGATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATG</genome_strand>
        <mrna_strand>GTCAAATTCTGCATCATCTCTCTTCACTACGCCTTCTCAATTTTTAGTACAATGTAATAATCCATCAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAG---CTTCTTCTTCTCCTTCATCAACTGGTG-T-T-GATTTGTCCAACCTCCAAACCGCCATTTCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAGTGGGGTTCTCAACCATATGTGTCACGTCGAACG......................................................................................................................ACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTTTTCTGTTTACGGTGGTAGGCACAACAGGGTTTTTGGGAGTTCTTGCTGGCCAACTTCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGGTTTCTTCGTTCCATACTTGATCGGAAGCATATCTTTAGTAGTTNTGGGAATCGGAAGTACTTCCCCAGC.....................................................................................................................GCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG......................................................................................................................................................................................................................................TTTCCTACCTAAATCGTGTCCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537765" ref_strand="+" ref_description="SGN-E537765 [TUS-56-I14]">
      <seq>ccccgggctgcaggtctgtttacagtggtaggcacaactgggtttttgggagttcttgcagggcaacttcctggtgattggggtttcttcgttccatacttgattgggagcatatctttagtagttttgggaatcggaagtacttccccagcgtaagtaaagattttaggtgttcttctgatactaataatgcattatactatctattcagttgagctttttctactgcatgcaggtcgttatggctcattcttttattcattatgtaggctccttcaggccgccattgatggattttcatccttttttcctgattaccaggagagaatcgccagacatgaagcagctcatttcttaggtggcatcctgttttagttttcaatattttatacttttatttttatttggctatgataatgacatgagttgagcttaaatgaaacattgaagattcatataagacgaacctcgacaagttattgttgttatttggttatgataatgacatcgaggcatagatgttattgttgatgtgcttctgcggttccattaactttcctctattaagccgtacaatgtcaatttcagtttcctaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="87567" stop="85431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87275" g_stop="87207" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="75" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86254" g_stop="85731" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="599" r_length="524" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E537765" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87275" e_stop="87207"/>
          <exon e_start="86254" e_stop="85731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGTGTATGTTCTCTTACTATCCTACTTTTCTGCTGTTCATTGTCCTATTTGTTTAACTCTGAAGTTTCATATTACATCTAAACTGTGGTTTATAAGCCTCATTCTCCCTGTTAAGTTTGCAAATAACGCACTGGATATGGGGCCTGAGTCTTTCATTTGGTTCTATTGTTATAGTCAATCTAGATAACTATATCTAGTTTGGTTTCGTGGGATTACAATCTCTTGATTTATTATCTGGATGTAAACCAAGTTGACAATCCTAAGAGGTGTTGGGGTGGTATTGTAGTTCAACACCCCACGTCTTTCTAACTACTGACCACTTGTTTAATAGTGTGAATAACCCTATGTTGCTCAGACTCTTCAAAAATGCCAAAGGATGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGTGCGGCATCAAAAGTGGAGAGTCCGCGCAACTAAGGAATCACCTCATCGAAAAGGTTAATTTGTTAAATAGACAAAAGTTTTTGTTTGTTCTTTACAAATTAAGATGTCTCACACCCAAGGGTGTGACTAAGTGGTCAATGAAGTGAGTTGCACGGAGGCAAAAAGCACTAGGTGGTTCTTTCCATTTTGTCACCAAGCCTTGGTGGGTAGAATACCCTCTATGCTTGTAGCAGGAACTCCATGAAATTAGTCGAGAAGAGTAATAACATGTTCCCATATGTCTGCACCAGAACATTTTTATTCGGAACCTATATAAAGATATCACCGATGTATTTTGTGTCGACATAGAAGTACTAGTGCGGGTTATTCGCGAAAGTGTAACAATGCACACAATTCTCAGATAATTTTGTTCGCCTTGGTGTTACTCCAAAACCAAGATGGGTTGTGAAGTACAGTGATGTTACTGTGTATCTGTATAGAACATATACATGCAGGTCACATTGTTGATTCTTTCTTTATGTTTTCAGGATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTA</genome_strand>
        <mrna_strand>GCTGCAGGTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGATGTTATTGTTGATGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266933" ref_strand="+" ref_description="SGN-E266933 [cLEI-7-K10]">
      <seq>ctgtttacagtggtaggcacaactgggtttttgggagttcttgcagggcaacttcctggtgattggggtttcttcgttccatacttgattgggagcatatctttagtagttttgggaatcggaagtacttccccagcgtaagtaaagattttaggtgttcttctgatactaataatgcattatactatctattcagttgagctttttctactgcatgcaggtcgttatggctcattcttttattcattatgtaggctccttcaggccgccattgatggattttcatccttttttcctgattaccaggagagaatcgccagacatgaagcagctcatttcttaggtggcatcctgttttagttttcaatattttatacttttatttttatttggctatgataatgacatgagttgagcttaaatgaaacattgaagattcatataagacgaacctcgacaagttattgttgttatttggttatgataatgacatcgaggcatagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="87566" stop="85510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87266" g_stop="87207" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86254" g_stop="85810" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="505" r_length="445" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E266933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87266" e_stop="87207"/>
          <exon e_start="86254" e_stop="85810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGTGTATGTTCTCTTACTATCCTACTTTTCTGCTGTTCATTGTCCTATTTGTTTAACTCTGAAGTTTCATATTACATCTAAACTGTGGTTTATAAGCCTCATTCTCCCTGTTAAGTTTGCAAATAACGCACTGGATATGGGGCCTGAGTCTTTCATTTGGTTCTATTGTTATAGTCAATCTAGATAACTATATCTAGTTTGGTTTCGTGGGATTACAATCTCTTGATTTATTATCTGGATGTAAACCAAGTTGACAATCCTAAGAGGTGTTGGGGTGGTATTGTAGTTCAACACCCCACGTCTTTCTAACTACTGACCACTTGTTTAATAGTGTGAATAACCCTATGTTGCTCAGACTCTTCAAAAATGCCAAAGGATGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGTGCGGCATCAAAAGTGGAGAGTCCGCGCAACTAAGGAATCACCTCATCGAAAAGGTTAATTTGTTAAATAGACAAAAGTTTTTGTTTGTTCTTTACAAATTAAGATGTCTCACACCCAAGGGTGTGACTAAGTGGTCAATGAAGTGAGTTGCACGGAGGCAAAAAGCACTAGGTGGTTCTTTCCATTTTGTCACCAAGCCTTGGTGGGTAGAATACCCTCTATGCTTGTAGCAGGAACTCCATGAAATTAGTCGAGAAGAGTAATAACATGTTCCCATATGTCTGCACCAGAACATTTTTATTCGGAACCTATATAAAGATATCACCGATGTATTTTGTGTCGACATAGAAGTACTAGTGCGGGTTATTCGCGAAAGTGTAACAATGCACACAATTCTCAGATAATTTTGTTCGCCTTGGTGTTACTCCAAAACCAAGATGGGTTGTGAAGTACAGTGATGTTACTGTGTATCTGTATAGAACATATACATGCAGGTCACATTGTTGATTCTTTCTTTATGTTTTCAGGATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTT</genome_strand>
        <mrna_strand>CTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475802" ref_strand="+" ref_description="SGN-E475802 [cSTB-41-H16]">
      <seq>cctcgtgccgctgcatcatctctcttcactacgccttctcaatttttagtacaatgtaataatccatcaattatttctggaaaattgagcttcaaaattcgagcttcagcagcttcttcttctccttcatcaactggtgttgatttgtccaacctccaaaccgccatttctaagaaagatagtaatgccgtaaaagaggcgcttgatcagctagttgaaatcggttggtccaaaaagtggggttctcaaccatatgtgtcacgtcgaacgacatctcttagagagctgacaactctcggaataaagaacgcagagaaccttgcaatcccaagtgtcagaaatgatgcagcttttctgtttacggtggtaggcacaacagggtttttgggagttcttgctggccaacttcctggtgattggggtttcttcgttccatacttgatcggaagcatatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="88975" stop="85911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88671" g_stop="88506" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="174" r_length="160" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88505" i_stop="87966" i_length="540">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87965" g_stop="87870" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="270" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87869" i_stop="87752" i_length="118">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87751" g_stop="87677" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="345" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87676" i_stop="87276" i_length="401">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87275" g_stop="87207" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="414" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.955" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86254" g_stop="86211" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="458" r_length="44" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E475802" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88671" e_stop="88506"/>
          <exon e_start="87965" e_stop="87870"/>
          <exon e_start="87751" e_stop="87677"/>
          <exon e_start="87275" e_stop="87207"/>
          <exon e_start="86254" e_stop="86211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAGGTACATTCCCTGTTTTTAATCGAAAATTTTAATCTTCTCTCCATTTTGTGCGTATTATAATTGTTGTCATTTTTGAGGTTTGTGTCGGTAATTTTTTTTTGGATGGAAAGAAAATTTGCCGCCGCTATCTTTTGGGACACATAGGAGTGAAAACCCTGCTAAATAATTAAGACATAATACATGAACATGAGACACAAGTAGGGTGTGCATAAGTAATGTTTAAACTCGTGTAAAATTGAACAAATAGATACATAACAATTTTGTGTCCTACGTGGTGATCTATGTGTGTACTACCACATAAGACAAGTGTGTCTACTTATTTAATTTTGTATAAGTTTAAGTGTCTGCTAGTGTATTCTCTGATTTGGAGCACATAGTTGTTGGTTGAAACCAAGTTAAGGATCATGTTTATGTATTATATCAATAATTAATGATGCTCCAATTTAGATATGGAACTCGCAAATAAGTGATGTTTGCAGTGTCTTTTTTTTTTTGGCAATTACTCCTAACTGTTTTATGTGCATATTTTCTTGATTGTAGAAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACGGTCAGTTTTCATTTAAAATGTGAAAAGACCAATGTGTATCTATCTGTTATCTAATTTATTTGATTAGCACACATTGTGACAATAATTCTCTTAATGGTCTTAAAATTTTCTGTTGCAGACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGATGTAAGTTTCTTGATGAAATTTGTATTGTTATTACGTTGATGACAGTAGCTCTCGATTCGGATATTGTTCTGTATTCTGATTGAAGAGAACTGTATGTTCACATGGGTGCGATAACTAAGGGGAATATTTGAGCTAACGTCGTGTTTATGGCACATGTATTGTTCATCTGTTTCATACACTGGAACATTGGTATCTCTACGATCATGAAATGAATATCTGACTACACATTTATTACATTTCTTTCGTGTCCCTACAAATGATTTCATGGTTCCAATTGTTGTTACTTGGAACATCAAAAGTTGTTTGACAACGGATGATTAATGTGGTTATGTCTTTTTCATTTGACTGTTATGGACTTCGTTATTAAATCTGTTTGATACTGATTTCCTTCAGTGATGCAGGCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGTGTATGTTCTCTTACTATCCTACTTTTCTGCTGTTCATTGTCCTATTTGTTTAACTCTGAAGTTTCATATTACATCTAAACTGTGGTTTATAAGCCTCATTCTCCCTGTTAAGTTTGCAAATAACGCACTGGATATGGGGCCTGAGTCTTTCATTTGGTTCTATTGTTATAGTCAATCTAGATAACTATATCTAGTTTGGTTTCGTGGGATTACAATCTCTTGATTTATTATCTGGATGTAAACCAAGTTGACAATCCTAAGAGGTGTTGGGGTGGTATTGTAGTTCAACACCCCACGTCTTTCTAACTACTGACCACTTGTTTAATAGTGTGAATAACCCTATGTTGCTCAGACTCTTCAAAAATGCCAAAGGATGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGTGCGGCATCAAAAGTGGAGAGTCCGCGCAACTAAGGAATCACCTCATCGAAAAGGTTAATTTGTTAAATAGACAAAAGTTTTTGTTTGTTCTTTACAAATTAAGATGTCTCACACCCAAGGGTGTGACTAAGTGGTCAATGAAGTGAGTTGCACGGAGGCAAAAAGCACTAGGTGGTTCTTTCCATTTTGTCACCAAGCCTTGGTGGGTAGAATACCCTCTATGCTTGTAGCAGGAACTCCATGAAATTAGTCGAGAAGAGTAATAACATGTTCCCATATGTCTGCACCAGAACATTTTTATTCGGAACCTATATAAAGATATCACCGATGTATTTTGTGTCGACATAGAAGTACTAGTGCGGGTTATTCGCGAAAGTGTAACAATGCACACAATTCTCAGATAATTTTGTTCGCCTTGGTGTTACTCCAAAACCAAGATGGGTTGTGAAGTACAGTGATGTTACTGTGTATCTGTATAGAACATATACATGCAGGTCACATTGTTGATTCTTTCTTTATGTTTTCAGGATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTT</genome_strand>
        <mrna_strand>ATCATCTCTCTTCACTACGCCTTCTCAATTTTTAGTACAATGTAATAATCCATCAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAG---CTTCTTCTTCTCCTTCATCAACTGGTG-T-T-GATTTGTCCAACCTCCAAACCGCCATTTCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAGTGGGGTTCTCAACCATATGTGTCACGTCGAACG......................................................................................................................ACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTTTTCTGTTTACGGTGGTAGGCACAACAGGGTTTTTGGGAGTTCTTGCTGGCCAACTTCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGGTTTCTTCGTTCCATACTTGATCGGAAGCATATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470181" ref_strand="+" ref_description="SGN-E470181 [cSTB-17-A20]">
      <seq>gtcaaattctgcatcatctctcttcactacgccttctcaatttttagtacaatgtaataatccatcaattatttctggaaaattgagcttcaaaattcgagcttcagcagcttcttcttctccttcatcaactggtgttgatttgtccaacctccaaaccgccatttctaagaaagatagtaatgccgtaaaagaggcgcttgatcagctagttgaaatcggttggtccaaaaagtggggttctcaaccatatgtgtcacgtcgaacgacatctcttagagagctgacaactctcggaataaagaacgcagagaaccttgcaatcccaagtgtcagaaatgatgcagcttttctgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="88983" stop="87359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88683" g_stop="88506" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88505" i_stop="87966" i_length="540">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87965" g_stop="87870" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="268" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87869" i_stop="87752" i_length="118">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87751" g_stop="87677" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="343" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E470181" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88683" e_stop="88506"/>
          <exon e_start="87965" e_stop="87870"/>
          <exon e_start="87751" e_stop="87677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAGGTACATTCCCTGTTTTTAATCGAAAATTTTAATCTTCTCTCCATTTTGTGCGTATTATAATTGTTGTCATTTTTGAGGTTTGTGTCGGTAATTTTTTTTTGGATGGAAAGAAAATTTGCCGCCGCTATCTTTTGGGACACATAGGAGTGAAAACCCTGCTAAATAATTAAGACATAATACATGAACATGAGACACAAGTAGGGTGTGCATAAGTAATGTTTAAACTCGTGTAAAATTGAACAAATAGATACATAACAATTTTGTGTCCTACGTGGTGATCTATGTGTGTACTACCACATAAGACAAGTGTGTCTACTTATTTAATTTTGTATAAGTTTAAGTGTCTGCTAGTGTATTCTCTGATTTGGAGCACATAGTTGTTGGTTGAAACCAAGTTAAGGATCATGTTTATGTATTATATCAATAATTAATGATGCTCCAATTTAGATATGGAACTCGCAAATAAGTGATGTTTGCAGTGTCTTTTTTTTTTTGGCAATTACTCCTAACTGTTTTATGTGCATATTTTCTTGATTGTAGAAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACGGTCAGTTTTCATTTAAAATGTGAAAAGACCAATGTGTATCTATCTGTTATCTAATTTATTTGATTAGCACACATTGTGACAATAATTCTCTTAATGGTCTTAAAATTTTCTGTTGCAGACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT</genome_strand>
        <mrna_strand>GTCAAATTCTGCATCATCTCTCTTCACTACGCCTTCTCAATTTTTAGTACAATGTAATAATCCATCAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAG---CTTCTTCTTCTCCTTCATCAACTGGTG-T-T-GATTTGTCCAACCTCCAAACCGCCATTTCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAGTGGGGTTCTCAACCATATGTGTCACGTCGAACG......................................................................................................................ACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475659" ref_strand="+" ref_description="SGN-E475659 [cSTB-41-G20]">
      <seq>cctcgtgccgctgcatcatctctcttcactacgccttctcaatttttagtacaatgtaataatccatcaattatttctggaaaattgagcttcaaaattcgagcttcagcagcttgttcttctccttcatcaactggtgttgatttgtccaacctccaaaccgccatttctaagaaagatagtaatgccgcaaaagaggcgcttgatcagctagttgaaatcggttggtccaaaaagtggggttctcaaccatatgtgtcacgtcgaacgacatctcttagagagctgacaactctcggaataaagaacgcagagaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="88975" stop="87402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88671" g_stop="88506" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="174" r_length="160" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88505" i_stop="87966" i_length="540">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87965" g_stop="87870" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="270" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87869" i_stop="87752" i_length="118">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87751" g_stop="87702" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="320" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E475659" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88671" e_stop="88506"/>
          <exon e_start="87965" e_stop="87870"/>
          <exon e_start="87751" e_stop="87702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAGGTACATTCCCTGTTTTTAATCGAAAATTTTAATCTTCTCTCCATTTTGTGCGTATTATAATTGTTGTCATTTTTGAGGTTTGTGTCGGTAATTTTTTTTTGGATGGAAAGAAAATTTGCCGCCGCTATCTTTTGGGACACATAGGAGTGAAAACCCTGCTAAATAATTAAGACATAATACATGAACATGAGACACAAGTAGGGTGTGCATAAGTAATGTTTAAACTCGTGTAAAATTGAACAAATAGATACATAACAATTTTGTGTCCTACGTGGTGATCTATGTGTGTACTACCACATAAGACAAGTGTGTCTACTTATTTAATTTTGTATAAGTTTAAGTGTCTGCTAGTGTATTCTCTGATTTGGAGCACATAGTTGTTGGTTGAAACCAAGTTAAGGATCATGTTTATGTATTATATCAATAATTAATGATGCTCCAATTTAGATATGGAACTCGCAAATAAGTGATGTTTGCAGTGTCTTTTTTTTTTTGGCAATTACTCCTAACTGTTTTATGTGCATATTTTCTTGATTGTAGAAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACGGTCAGTTTTCATTTAAAATGTGAAAAGACCAATGTGTATCTATCTGTTATCTAATTTATTTGATTAGCACACATTGTGACAATAATTCTCTTAATGGTCTTAAAATTTTCTGTTGCAGACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCT</genome_strand>
        <mrna_strand>ATCATCTCTCTTCACTACGCCTTCTCAATTTTTAGTACAATGTAATAATCCATCAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAG---CTTGTTCTTCTCCTTCATCAACTGGTG-T-T-GATTTGTCCAACCTCCAAACCGCCATTTCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATAGTAATGCCGCAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAGTGGGGTTCTCAACCATATGTGTCACGTCGAACG......................................................................................................................ACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475793" ref_strand="+" ref_description="SGN-E475793 [cSTB-41-F20]">
      <seq>cctcgtgccgctgcatcatctctcttcactacgccttctcaatttttagtacaatgtaataatccatcaattatttctggaaaattgagcttcaaaattcgagcttcagcagcttcttcttctccttcatcaactggtgttgatttgtccaacctccaaaccgccatttctaagaaagatagtaatgccgtaaaagaggcgcttgatcagctagttgaaatcggttggtccaaaaagtggggttctcaaccatatgtgtcacgtcgaacgacatctcttagagagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="88975" stop="87433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88671" g_stop="88506" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="174" r_length="160" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88505" i_stop="87966" i_length="540">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87965" g_stop="87870" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="270" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87869" i_stop="87752" i_length="118">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87751" g_stop="87733" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="289" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E475793" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88671" e_stop="88506"/>
          <exon e_start="87965" e_stop="87870"/>
          <exon e_start="87751" e_stop="87733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAGGTACATTCCCTGTTTTTAATCGAAAATTTTAATCTTCTCTCCATTTTGTGCGTATTATAATTGTTGTCATTTTTGAGGTTTGTGTCGGTAATTTTTTTTTGGATGGAAAGAAAATTTGCCGCCGCTATCTTTTGGGACACATAGGAGTGAAAACCCTGCTAAATAATTAAGACATAATACATGAACATGAGACACAAGTAGGGTGTGCATAAGTAATGTTTAAACTCGTGTAAAATTGAACAAATAGATACATAACAATTTTGTGTCCTACGTGGTGATCTATGTGTGTACTACCACATAAGACAAGTGTGTCTACTTATTTAATTTTGTATAAGTTTAAGTGTCTGCTAGTGTATTCTCTGATTTGGAGCACATAGTTGTTGGTTGAAACCAAGTTAAGGATCATGTTTATGTATTATATCAATAATTAATGATGCTCCAATTTAGATATGGAACTCGCAAATAAGTGATGTTTGCAGTGTCTTTTTTTTTTTGGCAATTACTCCTAACTGTTTTATGTGCATATTTTCTTGATTGTAGAAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACGGTCAGTTTTCATTTAAAATGTGAAAAGACCAATGTGTATCTATCTGTTATCTAATTTATTTGATTAGCACACATTGTGACAATAATTCTCTTAATGGTCTTAAAATTTTCTGTTGCAGACATCTCTTAGAGAGCTGA</genome_strand>
        <mrna_strand>ATCATCTCTCTTCACTACGCCTTCTCAATTTTTAGTACAATGTAATAATCCATCAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAG---CTTCTTCTTCTCCTTCATCAACTGGTG-T-T-GATTTGTCCAACCTCCAAACCGCCATTTCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAGTGGGGTTCTCAACCATATGTGTCACGTCGAACG......................................................................................................................ACATCTCTTAGAGAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311489" ref_strand="+" ref_description="SGN-E311489 [cLEZ-18-J16]">
      <seq>aatagtttctttatatttattttccttgttcatactcttacaatggaatatcacaaagagaagaagaatggaccatggctatctgtgccacaatttggacattgggatcaaaagggtgtctaccctgactactcaatggatttttctaaaataagagaaaataggaaacaaaacaaaaaggacttatcaagagccagttttggaaatgagaatgacctcattttctctaccaaaagtgatgcaaatgagaatgatcatcattaccatcaaaaccaatctacaactaggatgagaaggatctttagatatttcaattgctgtggaaaagcttgaagttcatggaattgatttttcatccaatttccttgtaatgaaaatatagtaatttgtgatttctacctaagttttgagtgacttttataagaaataggaaaatgttataaattttggaaattgtggtgattgtttcttaacatcctttgcttctcttgggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="93277" stop="90583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92977" g_stop="92918" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92917" i_stop="92094" i_length="824">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92093" g_stop="91869" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="285" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91868" i_stop="91095" i_length="774">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91094" g_stop="90875" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="505" r_length="220" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E311489" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92977" e_stop="92918"/>
          <exon e_start="92093" e_stop="91869"/>
          <exon e_start="91094" e_stop="90875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGTTTCTTTATATTTATTTTCCTTGTTCATACTCTTACAATGGAATATCACAAAGAGGTAATTAAGAGGCTATCTTTGTTAATTAATCCACATATTGTTGGCTGCCTTCTTGTTAATTTTGTTGCTAATTTTTTGATAATCACATGATTTCCTTGTTTATTCCTTCTTCAAAAATAAGATAAACATTAGGTTTCCATCTTTATTTTCTTGTTCTTAATCTTTCTTGTTTTCCTAGTATATATGTTTTTATTTGCGACTTATAACTTCTCTGTCTTGTCAAACTTCTAAAATTTATTTATTTTAATTGGCCATTTTTTAAAAGTACTTTTAATAAGTATTATTTTATGTTATCATTTGACTAATATTAGAATAACAAATTGTGTTTGATAGCTTTTGCTACTTTTTAAAAGTATTTTTTTCTTCTAAGAACTTTGACAAACACATCAATTCTATAAAATATACTGTATATATTTTTTATTTTTTATTTTTACAAATTTTAACTTCTCAGAAATTTGGCCAAATAAACTATTAGTCTAGCTACTAGCACTATTAAAAAACACCGGAATTAGCTATGAATTTTGTCATTAGTCCGTCGCTATTTTACTCATAGCTAACGAAATCTTTCGTTAGTCATTGTTCAATAGGATTAGCGATGGATTGCGTTGTTTATATATAGTTACAAAATTTATCCGTCGCTAAATTCATTTTTTTTAAAGTAGTGTAGGAAATTTATTGGTGGTTCAACTTTTTAAAGAAGTTATTCATTTTTTAATTGATATTGGTTGTAGATTAATCAATTTATAACATATTTGATATTTCTAAAAATATAAAAAATGTTACATATTAATTTATTGATGGTAAGCTTCTCTCTTTTTGTGCAGAAGAAGAATGGACCATGGCTATCTGTGCCACAATTTGGACATTGGGATCAAAAGGGTGTCTACCCTGACTACTCAATGGATTTTTCTAAAATAAGAGAAAATAGGAAACAAAACAAAAAGGACTTATCAAGAGCCAGTTTTGGAAATGAGAATGACCTCATTTTCTCTACCAAAAGTGATGCAAATGAGAATGATCATCATTACCATCAAAACCAATCTACAACTGTAAGATTTATAACTATTTTTTTTTTTTGTGTTAGTGAGATCTATAGATCATGCGTTTAAGCTGTGACATCACAACTGACATTGTGTTAGGATAAATTGTCTACAACTCACCTCCTTGGATTATGGACGTTTCATGTACCTTGTGTAAATGCATAATGCATTGTGCACTAGGTTATCGTCATTTAATTTGAAGAGGACAACCTCATAGCAATAATAAAATTTGTCTCTACGTGACTTTAGGTCATGAGTTCAAATCATGAAACGTGCACTCGTTTAACTTTTAGTTTGTTGTGTTTTTACCATCTTTAGATAATATCATTACTTATAGGGTTTTTAATTAATATTCCAAGATGTATATGGTATATAATATATGAATAAGATAAATAGTTAAGACATAATTTTTGGAAAAGATATAGTGGGGTACACGTTGTTAGGACCATTGTTGAGGATAATGCTTAGTTGTCCATGTATAAATGTTGACCTTGTTGATCATTAGATGGCAATGAACCAAATAGTCTTTTATAATTTGTTTGACTTAGTTCTAATTATGAAATATAACAATTGGTTTACTAATTAAACAAAATGAAAAATTTTCTTAGGAGTGTGGCTTAACGATCAATAATATGAAAATTATATATTTTTGAGTGATTTAATGCTATTTTTGAAAAATCTAAACAATACTGAATATGAAGGTTACATACTCTTCTTTTGCATGTTTTAGCATAGTGAACTATAAAAGTAATTGTTAATTTAATTTTTATTTTCTCTTGACAGAGGATGAGAAGGATCTTTAGATATTTCAATTGCTGTGGAAAAGCTTGAAGTTCATGGAATTGATTTTTCATCCAATTTCCTTGTAATGAAAATATAGTAATTTGTGATTTCTACCTAAGTTTTGAGTGACTTTTATAAGAAATAGGAAAATGTTATAAATTTTGGAAATTGTGGTGATTGTTTCTTAACATCCTTTGCTTCTCTTGGGTACATTCGAGAT</genome_strand>
        <mrna_strand>AATAGTTTCTTTATATTTATTTTCCTTGTTCATACTCTTACAATGGAATATCACAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGAATGGACCATGGCTATCTGTGCCACAATTTGGACATTGGGATCAAAAGGGTGTCTACCCTGACTACTCAATGGATTTTTCTAAAATAAGAGAAAATAGGAAACAAAACAAAAAGGACTTATCAAGAGCCAGTTTTGGAAATGAGAATGACCTCATTTTCTCTACCAAAAGTGATGCAAATGAGAATGATCATCATTACCATCAAAACCAATCTACAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGAGAAGGATCTTTAGATATTTCAATTGCTGTGGAAAAGCTTGAAGTTCATGGAATTGATTTTTCATCCAATTTCCTTGTAATGAAAATATAGTAATTTGTGATTTCTACCTAAGTTTTGAGTGACTTTTATAAGAAATAGGAAAATGTTATAAATTTTGGAAATTGTGGTGATTGTTTCTTAACATCCTTTGCTTCTCTTGGGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284128" ref_strand="+" ref_description="SGN-E284128 [cLER-13-D2]">
      <seq>gattttggaaccttgagtatgggtaaaaagactgtttctagggtggttggtattggtacaatttgtttggaaactagtattggaactaaactagttttgaacaatgtgaaacatgctcttgatgttcgtctgcacctaatttctgttggtgttttagatgatgaaggatatgttagtaccaacggtgatggaaaatggaagctcattaagggttccttggttgtggctcgtggtaacaaacgtcgtggtcaatactggactacggcctctgcttgttgatatggtgaatgcggttgaaagcgatagctcttcaacattatggctcctcgttggccngtggtttttttccttattcagaagggcttccacgtaaaattattggtgtcgttattttctcattttatttccattacatttaccatatatacttttatgcttgtccgtgttttcccaataggaatgacttgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="109064" stop="104784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108764" g_stop="108441" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108440" i_stop="105233" i_length="3208">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105232" g_stop="105095" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="460" r_length="139" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-E284128" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108764" e_stop="108441"/>
          <exon e_start="105232" e_stop="105095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTAGAACCTTGAGTATGGGTAATGAGACTGTTTCTAGGGTGGTTGATATTGGTAAAATTTGTTTGGAAACTAGTATTTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCCTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATGAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTCCTTGATTGTGGCTCATGGTAACAAACGTCGTGGTCTATACTGGACTACGGCCTCTGCTTGTGTTGATATGGTGAATGCGGTTGAGAGCGATAACTCTTCAACATTATGGCACAAGAGGCTTAGCCACATTAGCGAGAAAGGACTTAATGTTCTAGCCAAGAAGAAATTATTGTCAAATTTCCAAAGTGCTAAATTAGAAAAATGTGAGCACTGCTTGGCTGGTAAACAAAATAGAGTTTCCTTTAAGTCCTACCCTCCTTCGAGAAAGACAGAGTTGCTTGAGTTAGTGCACTCTGATTTATATGGTCCAATGAAGACAAAGACATTGGGTGGTGCACTTTACTATATCACTTTCATTGATGATTGCTCGAGAAAACTTTGGGTCTATGTCTTGAAGACTAAAGACCAAGTGTTAGGTGTCTTTAAGCAGTTTCAGGCTTCAGTTGAAAGAGAAACTGGAAAGAAATTTAAATGTATTCGTACTGATAATGGTGGTGAATATAGTGGAACATTTGACGAATACTGCAAGCATCAAGGTATTAGACACCAGAAGACTCCTCCCGAGACTCCTCAGCTTAATGGTTTGGCTGAGAGGATGAACAGGACCTTGATGGAAAGAGTTAGATGTTTGCTTTCTGAAGCAAAGTTGCCGAACTCATTTTTGGGTGAGGCTTTATTGACCGCTGCACATGTTATTAATCTATCTCCTGTTGTTGCTTTGCAAAGTGATGTGCCAAATAGTGTTTGGTATGGAAAGGATGTTTCCTATGACCATTTGAGAGTATTTGGTTGCAAAGCTTTTGTATATGTGCCGAAAGATGAGAGGTCAAAATTAGATGCCAAGACAAGGCAATGCATCTTCATTGGATATGGCCTAGATGAATTTGGTTACAGGCTATATGATCCAATTGAAAAGAAACTTGTGAGAAGCCGTGATATTATTTTCATGGAGAATCAAACAATTGAAGATATTGACAAAGCGAAGAAGGTAGAATCTTCAAGTTTTGATGGTATAGTTAATCATGATGAAGTTCCTCACACAAGTGTGCATGATGTTGTTGGGTTTGATAATCATGGTGACGCCCAGAATCATGTATCAAATCAACATGTTGATGTTGATAATAACAATGATATTGTTATTAATGATCTTGTTGTTCATGAAGTTGTGGACGAATCAAATATTCCGCTTCGGAGGTCCACAAGACAGCGGTTTCCTTCCTCCCGTTATTCACCCAATGAGTATATGTTACTCACTGACGGGGGAGAACCTCAATGTTATGAGGAGGCCATGGAAGATGAGCACAAGAATCAATGGATTGAAGTCATGCAAGACGAGATGAAGTCTTTGCATGAGAACCACACTTATGAGTTGGTAAAATTGCCCAAGGGCATGAGAGCTTTGAAGAACAAGTGGGTGTTCAAAGTTAAAGTTGAAGAACACAACTTGAAGCCCAGGTACAAAGCTAGATTGGTTGTTAAGGGATTCGGTTAAAGGAAAGGTATTGACTTTGACGAAATATTTTCTCCTGTTGTGAAAATGTCCTCGATTCGCACAATTCTAGGTTTAGCTGCTAGTCTTAATTTAGAGATTGAGCAGATGGATGTGAAGACGGCTTTTCTTCACGGTGACCTAGAAGAAGAGATTTATATGGAACAACCTGAGGGCTTCAAAGTAGATGGCAAAGAAAATTTTGTATGCAAACTCAAAAAGAGTCTCTATGGCCTAAAACAAGCTCCTAGACAGTGGTACAAAAAGTTTGAATATGTTATGGGGGAGCAAGGCTATATAAAGACTTCTTCAGATCATTGCGTATTTGTACAAAAATTTTCTGACAATGATTTTATCATCCTTTTGTTGTATGTGGATGATATGTTGATTGTGGGCAAAAATACTTCCAAGATTGGCGAACTAAAGAAAGAGTTGTGTAAGTCTTTTTATATGAAAGACTTGGGTCATGCCAAGCAAATTTTGGGCATGAAAATTACTCGTCTTAGAGATAAAAGGAAGATTTATTTGTCCCAGAAGAAGTAAATTGAACGCGTACTGGAGCGCTTCAATATGAAGAATGCTAAGCCTGTTAGTATACCTCTTGCTGGTCATATGAAGTTGAGCAAGAAGATGTGTCCTACAGCTAGGGAGGAAAAAGAGAACATGGCCAAAGTTCCATATTCCTCCGTCGTTGGAAGTCTAATGATGCAATGGTGTGCACTAGACCTGATATTGCTCACGCAGTTGGTGTTATCAGTAGATTTCTCGAAAATCCGGGAAAAGAGCATTGGGAAGCTGTGAAATGGATACTCAGGTATCTTAGAGGAAGCTCAGATGAATGCTTGTGTTTTGGAGCATCAAATCCAATCTTGAAAGGCTATACAGATTCTGATATGGCAGGTGACCTTGATAACAGAAAATCGACTACTGGATATTTGTTTACTTTTTCAGGGGGAGCTATATCATGGCAGTCAAAGTTGCAGAAGTGTGTTGCACTATCTACAACTGAAGCTGAGTAGATTGCGGCTACTGAAGCCGGCAAGGAGATGATATGACTAAAGCGATTTCTTCAAGAGCTTGGTTTGAATCAGATGGAGTATATTGTCTATTGTGACAGTCAGAGTGCAATAGACTTGAGCAAGAAATCCATGTACCATGCAAGAACAAAACACATTGACGTCAGATATCATTGGATTCGTGAGAAAGTGGAGAATGAATCATTTCACGTCAAAAAGATTCACACAAGTGAAAATCCTGCAGATATGCTGACTAAGATGATACCAAAAGACAAGTTCGAGTTATGCAAAGAACTTGTGGGCATGAGCTCTCTCTAAAGAAGTTGAAGATTCCTTCTTCCAGTAAATGGGACTGGAGGGGGAGATTTGTTGAATCCATCCCATTGTTTTAATCAACTTTAGCTATTCAATTGGTACAATCAATTGTTAAAAATGAATAGTAATTGGAGTTGAAAAGAAAAGATTTGGTAGTTGGCAAATTGGTAAAATTTGCAACCATTTTTGACTTTGCTATGTTTACATATGTCATTAGTGACATATGTATGGTTTTATCCTTCTACAAATAGAGCATTCTTGCTCATTTGTAGAACACACCAAGTTAGAGAGAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAATAATATCAATTGCTCCTC-TTGGCCCGTGGTTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTTATTTTCCCATTTTATTTTCATTACTTTTACAATATTTACTTTTGTGCTTGTCCGCGTTTTCCCAACAAGAA</genome_strand>
        <mrna_strand>GATTTTGGAACCTTGAGTATGGGTAAAAAGACTGTTTCTAGGGTGGTTGGTATTGGTACAATTTGTTTGGAAACTAGTATT-GGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCTTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATGAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTCCTTGGTTGTGGCTCGTGGTAACAAACGTCGTGGTCAATACTGGACTACGGCCTCTGC-T-TGTTGATATGGTGAATGCGGTTGAAAGCGATAGCTCTTCAACATTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCGTTGGCCNGTGGTTTTTTTCCTTATTCAGAAGGGCTTCCACGTAAAATTATTGGTGTCGTTATTTTCTCATTTTATTTCCATTACATTTACCATATATACTTTTATGCTTGTCCGTGTTTTCCCAATAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>33</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1957" PGL_stop="3129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1957" e_stop="2039"/>
            <exon e_start="2665" e_stop="3129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1957" e_stop="2039" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2040" i_stop="2664" i_length="625"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="2665" e_stop="3129" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1957" stop="2039"/>
              <exon start="2665" stop="3129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1959" stop="2039"/>
              <exon start="2665" stop="2975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2672" stop="3017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281162" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGGCTGAGTTCATTGAAGATACAAAGAACAAGAATGAAGATCCATCCATAAGCATTGTTTCTGATGGAAAATCTTCTAATG : AACCATCAAAAGTTGACCAAGTAGTAGAAACACAAGCAGAAAATAGTACACAAAATCAAGAAAAAGAAAATATTATTGCTCAACAAGGTCAAGAAGTAGATAAATCTAAAGAAAATTCTCAAAAACAAGAACAAGAACAAACCGAAGAAGAAGAAGAGGAGGAGGAAAATGCTAATGAAGAGGACAGAGCAAATTTTTCAACACGTCCAGGAAAAAGATCAGCTCCTAAACCTAAGACTGGTTGAGATTAATTATTTCAATATTGTGATAATTATTTCAACAAGCCTAGCTATTTTTTCTAGGGTTTTATTTTGGTTTGTTCTTCTCATTTTTAATATTGTAATGTGTAAGGAATATTCTTCTTGTTTCTTTGTTTGTTTTTCTCTTCCTTTTTTTTTTTTATAAATATGGTAATGATTAATATATTTTTTTGAAAAAATGTCATAAGAAATAATTAAATTCTTT</gDNA_template>
            <first_frame> D  G  *  V  H  *  R  Y  K  E  Q  E  *  R  S  I  H  K  H  C  F  *  W  K  I  F  *  * :   T  I  K  S  *  P  S  S  R  N  T  S  R  K  *  Y  T  K  S  R  K  R  K  Y  Y  C  S  T  R  S  R  S  R  *  I  *  R  K  F  S  K  T  R  T  R  T  N  R  R  R  R  R  G  G  G  K  C  *  *  R  G  Q  S  K  F  F  N  T  S  R  K  K  I  S  S  *  T  *  D  W  L  R  L  I  I  S  I  L  *  *  L  F  Q  Q  A  *  L  F  F  L  G  F  Y  F  G  L  F  F  S  F  L  I  L  *  C  V  R  N  I  L  L  V  S  L  F  V  F  L  F  L  F  F  F  Y  K  Y  G  N  D  *  Y  I  F  L  K  K  C  H  K  K  *  L  N  S   </first_frame>
            <second_frame>  M  A  E  F  I  E  D  T  K  N  K  N  E  D  P  S  I  S  I  V  S  D  G  K  S  S  N   : E  P  S  K  V  D  Q  V  V  E  T  Q  A  E  N  S  T  Q  N  Q  E  K  E  N  I  I  A  Q  Q  G  Q  E  V  D  K  S  K  E  N  S  Q  K  Q  E  Q  E  Q  T  E  E  E  E  E  E  E  E  N  A  N  E  E  D  R  A  N  F  S  T  R  P  G  K  R  S  A  P  K  P  K  T  G  *  D  *  L  F  Q  Y  C  D  N  Y  F  N  K  P  S  Y  F  F  *  G  F  I  L  V  C  S  S  H  F  *  Y  C  N  V  *  G  I  F  F  L  F  L  C  L  F  F  S  S  F  F  F  F  I  N  M  V  M  I  N  I  F  F  *  K  N  V  I  R  N  N  *  I  L  </second_frame>
            <third_frame>   W  L  S  S  L  K  I  Q  R  T  R  M  K  I  H  P  *  A  L  F  L  M  E  N  L  L  M  :  N  H  Q  K  L  T  K  *  *  K  H  K  Q  K  I  V  H  K  I  K  K  K  K  I  L  L  L  N  K  V  K  K  *  I  N  L  K  K  I  L  K  N  K  N  K  N  K  P  K  K  K  K  R  R  R  K  M  L  M  K  R  T  E  Q  I  F  Q  H  V  Q  E  K  D  Q  L  L  N  L  R  L  V  E  I  N  Y  F  N  I  V  I  I  I  S  T  S  L  A  I  F  S  R  V  L  F  W  F  V  L  L  I  F  N  I  V  M  C  K  E  Y  S  S  C  F  F  V  C  F  S  L  P  F  F  F  L  *  I  W  *  *  L  I  Y  F  F  E  K  M  S  *  E  I  I  K  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1958" stop="2039"/>
                    <exon start="2665" stop="2909"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAEFIEDTKNKNEDPSISIVSDGKSSNEPSKVDQVVETQAENSTQNQEKENIIAQQGQEVDKSKENSQKQEQEQTEEEEEEEENANEEDRANFSTRPGKRSAPKPKTG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2764" stop="3069"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INLKKILKNKNKNKPKKKKRRRKMLMKRTEQIFQHVQEKDQLLNLRLVEINYFNIVIIISTSLAIFSRVLFWFVLLIFNIVMCKEYSSCFFVCFSLPFFFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6877" PGL_stop="7388"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6877" e_stop="6961"/>
            <exon e_start="7070" e_stop="7388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6877" e_stop="6961" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6962" i_stop="7069" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7070" e_stop="7388" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6877" stop="6961"/>
              <exon start="7070" stop="7388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6877" stop="6961"/>
              <exon start="7070" stop="7388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6878" stop="6961"/>
              <exon start="7070" stop="7388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6944" stop="6961"/>
              <exon start="7070" stop="7330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309602" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAAAAATGGCTAATTTCTTCATAGATATAAAGAAGATTGAAGATTTGTTTGTATACATTGTTTCTTGTGGAAAATCTTCTAAAG : AAGGAGAAGAGAATGATGGAGGAAGAGCAAATGTTTCAAGACCTCCAGGCCAAAGACCAGCTCCTAGGCCTCAGACTGGTCGATAATAATTAATGTTAGTGATTATTATTTCAAAAAACTTTGTTGTTTTATGATAAAAAATAATTAATGTTATGATATTTTTTAAGATTGTAATTCTTAATCTGTTTTAAAAAGAACAATTAAATTGTGCAACATTTATTTGTACAATTACACCCATATATATGTAATATATACCTTTTTATCAATTTGTAGTCTATGTGTGACTTGTTTATACACGTATATACAATTACATACTCTC</gDNA_template>
            <first_frame> I  K  M  A  N  F  F  I  D  I  K  K  I  E  D  L  F  V  Y  I  V  S  C  G  K  S  S  K   : E  G  E  E  N  D  G  G  R  A  N  V  S  R  P  P  G  Q  R  P  A  P  R  P  Q  T  G  R  *  *  L  M  L  V  I  I  I  S  K  N  F  V  V  L  *  *  K  I  I  N  V  M  I  F  F  K  I  V  I  L  N  L  F  *  K  E  Q  L  N  C  A  T  F  I  C  T  I  T  P  I  Y  M  *  Y  I  P  F  Y  Q  F  V  V  Y  V  *  L  V  Y  T  R  I  Y  N  Y  I  L   </first_frame>
            <second_frame>  *  K  W  L  I  S  S  *  I  *  R  R  L  K  I  C  L  Y  T  L  F  L  V  E  N  L  L  K  :  K  E  K  R  M  M  E  E  E  Q  M  F  Q  D  L  Q  A  K  D  Q  L  L  G  L  R  L  V  D  N  N  *  C  *  *  L  L  F  Q  K  T  L  L  F  Y  D  K  K  *  L  M  L  *  Y  F  L  R  L  *  F  L  I  C  F  K  K  N  N  *  I  V  Q  H  L  F  V  Q  L  H  P  Y  I  C  N  I  Y  L  F  I  N  L  *  S  M  C  D  L  F  I  H  V  Y  T  I  T  Y  S  </second_frame>
            <third_frame>   K  N  G  *  F  L  H  R  Y  K  E  D  *  R  F  V  C  I  H  C  F  L  W  K  I  F  *  R :   R  R  R  E  *  W  R  K  S  K  C  F  K  T  S  R  P  K  T  S  S  *  A  S  D  W  S  I  I  I  N  V  S  D  Y  Y  F  K  K  L  C  C  F  M  I  K  N  N  *  C  Y  D  I  F  *  D  C  N  S  *  S  V  L  K  R  T  I  K  L  C  N  I  Y  L  Y  N  Y  T  H  I  Y  V  I  Y  T  F  L  S  I  C  S  L  C  V  T  C  L  Y  T  Y  I  Q  L  H  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0039K13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="15663" PGL_stop="16372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15663" e_stop="16372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15663" e_stop="16372" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15663" stop="16372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15663" stop="16362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15664" stop="16099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAATGCTAATTATATTTCTCCAACTATATATTATATTTTAAGGAACAAGTATGTATTGAACCTTTCAACATTTATGATCTAAAATTAAGGGAGATAATAGCTAAGGGGAAAAAGCAAGATGGCCATTTTCCTGTAAGATACGAAGAATCAAGATATATTCAAAAACCTTGCTTCTAATGGTAAGAGTGAGTAATTAAAAACTATCATCCTATCTACATATATATACTCATTTCATCATATCATTGTCCTTGATATCAATTGTTGGGCTAAAATAACGTAACATTTAATATATTATTTATATTTGGTGTGATATATATAGTGGCGGATTCAGAATTTTCATTTAGAGGGTTTAAATAATAAAAGTATAAACGTGTAAATAAGTCTTTCGGAATGGGACCCTTGAATTTTTTTGGGTTTAAAACCACAGTTTTAGCGCGTAGATTCGAACTAGGGGCGTCCAGCTTAATATTCTGGGGTCTTGCCACTGAACCATCTATTTCTATTTGTTATTGAAGGGGTTCAAAATATATGAATCTACAGGAATACGGAAAATTTATCTTATATATATCTTATATTTTTTTGCCGAGGGATGGACCCTACATGGGTCCGCCCTGTACAAGATCAAGAAAATATAAGTACTCCCTCTATTTTACAAAGAATGATCTGGTTTGACTTGGTACGGAGTTTAAAAATATAAAGAATTTTTTTG</gDNA_template>
            <first_frame> *  M  L  I  I  F  L  Q  L  Y  I  I  F  *  G  T  S  M  Y  *  T  F  Q  H  L  *  S  K  I  K  G  D  N  S  *  G  E  K  A  R  W  P  F  S  C  K  I  R  R  I  K  I  Y  S  K  T  L  L  L  M  V  R  V  S  N  *  K  L  S  S  Y  L  H  I  Y  T  H  F  I  I  S  L  S  L  I  S  I  V  G  L  K  *  R  N  I  *  Y  I  I  Y  I  W  C  D  I  Y  S  G  G  F  R  I  F  I  *  R  V  *  I  I  K  V  *  T  C  K  *  V  F  R  N  G  T  L  E  F  F  W  V  *  N  H  S  F  S  A  *  I  R  T  R  G  V  Q  L  N  I  L  G  S  C  H  *  T  I  Y  F  Y  L  L  L  K  G  F  K  I  Y  E  S  T  G  I  R  K  I  Y  L  I  Y  I  L  Y  F  F  A  E  G  W  T  L  H  G  S  A  L  Y  K  I  K  K  I  *  V  L  P  L  F  Y  K  E  *  S  G  L  T  W  Y  G  V  *  K  Y  K  E  F  F   </first_frame>
            <second_frame>  E  C  *  L  Y  F  S  N  Y  I  L  Y  F  K  E  Q  V  C  I  E  P  F  N  I  Y  D  L  K  L  R  E  I  I  A  K  G  K  K  Q  D  G  H  F  P  V  R  Y  E  E  S  R  Y  I  Q  K  P  C  F  *  W  *  E  *  V  I  K  N  Y  H  P  I  Y  I  Y  I  L  I  S  S  Y  H  C  P  *  Y  Q  L  L  G  *  N  N  V  T  F  N  I  L  F  I  F  G  V  I  Y  I  V  A  D  S  E  F  S  F  R  G  F  K  *  *  K  Y  K  R  V  N  K  S  F  G  M  G  P  L  N  F  F  G  F  K  T  T  V  L  A  R  R  F  E  L  G  A  S  S  L  I  F  W  G  L  A  T  E  P  S  I  S  I  C  Y  *  R  G  S  K  Y  M  N  L  Q  E  Y  G  K  F  I  L  Y  I  S  Y  I  F  L  P  R  D  G  P  Y  M  G  P  P  C  T  R  S  R  K  Y  K  Y  S  L  Y  F  T  K  N  D  L  V  *  L  G  T  E  F  K  N  I  K  N  F  F  </second_frame>
            <third_frame>   N  A  N  Y  I  S  P  T  I  Y  Y  I  L  R  N  K  Y  V  L  N  L  S  T  F  M  I  *  N  *  G  R  *  *  L  R  G  K  S  K  M  A  I  F  L  *  D  T  K  N  Q  D  I  F  K  N  L  A  S  N  G  K  S  E  *  L  K  T  I  I  L  S  T  Y  I  Y  S  F  H  H  I  I  V  L  D  I  N  C  W  A  K  I  T  *  H  L  I  Y  Y  L  Y  L  V  *  Y  I  *  W  R  I  Q  N  F  H  L  E  G  L  N  N  K  S  I  N  V  *  I  S  L  S  E  W  D  P  *  I  F  L  G  L  K  P  Q  F  *  R  V  D  S  N  *  G  R  P  A  *  Y  S  G  V  L  P  L  N  H  L  F  L  F  V  I  E  G  V  Q  N  I  *  I  Y  R  N  T  E  N  L  S  Y  I  Y  L  I  F  F  C  R  G  M  D  P  T  W  V  R  P  V  Q  D  Q  E  N  I  S  T  P  S  I  L  Q  R  M  I  W  F  D  L  V  R  S  L  K  I  *  R  I  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0039K13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="19401" PGL_stop="19870"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19401" e_stop="19870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="19401" e_stop="19870" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19401" stop="19870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241400" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATGTATATATATAAAATTAAAATTTTAACCTAACTCAATGACATAATTTCTGACTAATAGATATGAAATGACATTCCTTAGTATGACTGTACACTGAATATGAGCAGCGTACACAAATGAAAGGATCCAAGATTACGTATAAATTAATATTCTTTTACTAGCAATAATTTGAAGCACATGATCCTGAACAATTATTATGAATTTAATTGTCTTAAATGTTAGGTGGGTTTATTTTTATTTTTGTCTTAAATGATAGGTAGGGTATATTTTACTCTTTTGTTCTTTTCTAAAAATAAATAATCATGAAATGACTTCTCAACTTTATTTATATTATAGCTATTTTAATTTATTTAAGACTAAGAAGGAAAGTATATTTAGGAGCGGAGTTATCTTGAACGAAGGATGATTCATTATACACTTTTTTTATATGTGATGTTTAGAAGTTAAATGTTAGATATTATAATTATC</gDNA_template>
            <first_frame> T  C  I  Y  I  K  L  K  F  *  P  N  S  M  T  *  F  L  T  N  R  Y  E  M  T  F  L  S  M  T  V  H  *  I  *  A  A  Y  T  N  E  R  I  Q  D  Y  V  *  I  N  I  L  L  L  A  I  I  *  S  T  *  S  *  T  I  I  M  N  L  I  V  L  N  V  R  W  V  Y  F  Y  F  C  L  K  *  *  V  G  Y  I  L  L  F  C  S  F  L  K  I  N  N  H  E  M  T  S  Q  L  Y  L  Y  Y  S  Y  F  N  L  F  K  T  K  K  E  S  I  F  R  S  G  V  I  L  N  E  G  *  F  I  I  H  F  F  Y  M  *  C  L  E  V  K  C  *  I  L  *  L   </first_frame>
            <second_frame>  H  V  Y  I  *  N  *  N  F  N  L  T  Q  *  H  N  F  *  L  I  D  M  K  *  H  S  L  V  *  L  Y  T  E  Y  E  Q  R  T  Q  M  K  G  S  K  I  T  Y  K  L  I  F  F  Y  *  Q  *  F  E  A  H  D  P  E  Q  L  L  *  I  *  L  S  *  M  L  G  G  F  I  F  I  F  V  L  N  D  R  *  G  I  F  Y  S  F  V  L  F  *  K  *  I  I  M  K  *  L  L  N  F  I  Y  I  I  A  I  L  I  Y  L  R  L  R  R  K  V  Y  L  G  A  E  L  S  *  T  K  D  D  S  L  Y  T  F  F  I  C  D  V  *  K  L  N  V  R  Y  Y  N  Y  </second_frame>
            <third_frame>   M  Y  I  Y  K  I  K  I  L  T  *  L  N  D  I  I  S  D  *  *  I  *  N  D  I  P  *  Y  D  C  T  L  N  M  S  S  V  H  K  *  K  D  P  R  L  R  I  N  *  Y  S  F  T  S  N  N  L  K  H  M  I  L  N  N  Y  Y  E  F  N  C  L  K  C  *  V  G  L  F  L  F  L  S  *  M  I  G  R  V  Y  F  T  L  L  F  F  S  K  N  K  *  S  *  N  D  F  S  T  L  F  I  L  *  L  F  *  F  I  *  D  *  E  G  K  Y  I  *  E  R  S  Y  L  E  R  R  M  I  H  Y  T  L  F  L  Y  V  M  F  R  S  *  M  L  D  I  I  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0039K13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="51217" PGL_stop="50687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51217" e_stop="50687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51217" e_stop="50687" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51217" stop="50687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51217" stop="50697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51216" stop="50856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288480" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGTCTTGGGCATTTGGCAAAACTACTCATAATTTAATAATTTCTTGAAGTTGTATAAACATATGGATATGGTGATGAAGTTGGGAACATCAAGCGCGGTGGTGATATTCACAAAGAGTAGTTGTTGCATTTCTCATAGCATTGAAACCCTAATCCGTAGCTTTGGAGCAAACCCTACCGTTTACGAGCTTGATACACATCCAAATGGGAAGCAAATGGAGAAGGCATTGATGGAGCTAGGGTGTCAACCAAGTGTACCAACAATATTTATAGGGAAAGAGTTAGTTGGTGGTGCAAATGAGATAATGAGCCTTAATGTGAGGGGCAAACTTAAACAATTGCTCATTAGGGCTAATGCCATTTGGGTATAAAAAGTAATTATATAATAACAAGCGTATTTGGAGGTTTTTATATAATAAATATATACAACTTATACATAGAGTCTTTTAGCTTCTTTGGATGGTTGTTTTATCTACCTATTTGATTAAGTTCTTGATGTATGAACAAATAATAATATCTTATACTATAAT</gDNA_template>
            <first_frame> *  V  L  G  I  W  Q  N  Y  S  *  F  N  N  F  L  K  L  Y  K  H  M  D  M  V  M  K  L  G  T  S  S  A  V  V  I  F  T  K  S  S  C  C  I  S  H  S  I  E  T  L  I  R  S  F  G  A  N  P  T  V  Y  E  L  D  T  H  P  N  G  K  Q  M  E  K  A  L  M  E  L  G  C  Q  P  S  V  P  T  I  F  I  G  K  E  L  V  G  G  A  N  E  I  M  S  L  N  V  R  G  K  L  K  Q  L  L  I  R  A  N  A  I  W  V  *  K  V  I  I  *  *  Q  A  Y  L  E  V  F  I  *  *  I  Y  T  T  Y  T  *  S  L  L  A  S  L  D  G  C  F  I  Y  L  F  D  *  V  L  D  V  *  T  N  N  N  I  L  Y  Y  N </first_frame>
            <second_frame>  K  S  W  A  F  G  K  T  T  H  N  L  I  I  S  *  S  C  I  N  I  W  I  W  *  *  S  W  E  H  Q  A  R  W  *  Y  S  Q  R  V  V  V  A  F  L  I  A  L  K  P  *  S  V  A  L  E  Q  T  L  P  F  T  S  L  I  H  I  Q  M  G  S  K  W  R  R  H  *  W  S  *  G  V  N  Q  V  Y  Q  Q  Y  L  *  G  K  S  *  L  V  V  Q  M  R  *  *  A  L  M  *  G  A  N  L  N  N  C  S  L  G  L  M  P  F  G  Y  K  K  *  L  Y  N  N  K  R  I  W  R  F  L  Y  N  K  Y  I  Q  L  I  H  R  V  F  *  L  L  W  M  V  V  L  S  T  Y  L  I  K  F  L  M  Y  E  Q  I  I  I  S  Y  T  I   </second_frame>
            <third_frame>   S  L  G  H  L  A  K  L  L  I  I  *  *  F  L  E  V  V  *  T  Y  G  Y  G  D  E  V  G  N  I  K  R  G  G  D  I  H  K  E  *  L  L  H  F  S  *  H  *  N  P  N  P  *  L  W  S  K  P  Y  R  L  R  A  *  Y  T  S  K  W  E  A  N  G  E  G  I  D  G  A  R  V  S  T  K  C  T  N  N  I  Y  R  E  R  V  S  W  W  C  K  *  D  N  E  P  *  C  E  G  Q  T  *  T  I  A  H  *  G  *  C  H  L  G  I  K  S  N  Y  I  I  T  S  V  F  G  G  F  Y  I  I  N  I  Y  N  L  Y  I  E  S  F  S  F  F  G  W  L  F  Y  L  P  I  *  L  S  S  *  C  M  N  K  *  *  Y  L  I  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51184" stop="50846"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNNFLKLYKHMDMVMKLGTSSAVVIFTKSSCCISHSIETLIRSFGANPTVYELDTHPNGKQMEKALMELGCQPSVPTIFIGKELVGGANEIMSLNVRGKLKQLLIRANAIWV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="83124" PGL_stop="84850"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83124" e_stop="83156"/>
            <exon e_start="84175" e_stop="84850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.424"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.424">
            <gDNA_exon_boundary e_start="83124" e_stop="83156" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83157" i_stop="84174" i_length="1018"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="84175" e_stop="84850" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83124" stop="83156"/>
              <exon start="84175" stop="84850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537756" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATGCATTGCACTTGCTTTTACCTCACCATTGA : AATACATTCTCTATTAAGCATATTTATATATATACTTCTTTCTGTTCTTCGATATATTTTCAAATTTATGAGAAAAAATCACATGTTTTTCATGTACAAGTGTTTAGTCACATTTCTGGAGTAAGATCAAGCTGCTTTCTCAATTGCTTCTATGCAGTCTACGACCGATGCCTTGTTTGTCATTGCCGCTATTAGGGCTTCATGAAGCTTGCTATTATTTTTCAGTAGTGAAGCAGCAAATAAGACCTGCAAAAATTGAATCAGACAAACTAATGGTCTTGCTTGGATTTACTTGCAACATTATAATCAATGTCTTCGTTTAGCTTAGAAGTGGCAAAAGCAAACAATCTACGTGTGGTATGCATCTTGAATTTTGTATATGTTTGTATGTTAGAAATATGTGATCATCTCATCACATACTTTTACTTTTAATTATGTAGTTATATTATGTCTCACCACCTCTTGTGATGTGCTCTGATACCATGTTGAAGTGTGTGATGATTTCATATAAAAGCTTAAACTACTAGAGACTAAGACACTTTTAATTGACTTAATTATGTTATATATTTCAATAGTTTGTGTATATTTATCACAGTATGTGTTCGGTTTTAGACTCACCGCCCATCTTGTAAGGTTCTGCTGCTGGTCTTTGCTAAGCGACGGCTTGCTCCTGTTT</gDNA_template>
            <first_frame> H  A  L  H  L  L  L  P  H  H  *  :  N  T  F  S  I  K  H  I  Y  I  Y  T  S  F  C  S  S  I  Y  F  Q  I  Y  E  K  K  S  H  V  F  H  V  Q  V  F  S  H  I  S  G  V  R  S  S  C  F  L  N  C  F  Y  A  V  Y  D  R  C  L  V  C  H  C  R  Y  *  G  F  M  K  L  A  I  I  F  Q  *  *  S  S  K  *  D  L  Q  K  L  N  Q  T  N  *  W  S  C  L  D  L  L  A  T  L  *  S  M  S  S  F  S  L  E  V  A  K  A  N  N  L  R  V  V  C  I  L  N  F  V  Y  V  C  M  L  E  I  C  D  H  L  I  T  Y  F  Y  F  *  L  C  S  Y  I  M  S  H  H  L  L  *  C  A  L  I  P  C  *  S  V  *  *  F  H  I  K  A  *  T  T  R  D  *  D  T  F  N  *  L  N  Y  V  I  Y  F  N  S  L  C  I  F  I  T  V  C  V  R  F  *  T  H  R  P  S  C  K  V  L  L  L  V  F  A  K  R  R  L  A  P  V  </first_frame>
            <second_frame>  M  H  C  T  C  F  Y  L  T  I  E :   I  H  S  L  L  S  I  F  I  Y  I  L  L  S  V  L  R  Y  I  F  K  F  M  R  K  N  H  M  F  F  M  Y  K  C  L  V  T  F  L  E  *  D  Q  A  A  F  S  I  A  S  M  Q  S  T  T  D  A  L  F  V  I  A  A  I  R  A  S  *  S  L  L  L  F  F  S  S  E  A  A  N  K  T  C  K  N  *  I  R  Q  T  N  G  L  A  W  I  Y  L  Q  H  Y  N  Q  C  L  R  L  A  *  K  W  Q  K  Q  T  I  Y  V  W  Y  A  S  *  I  L  Y  M  F  V  C  *  K  Y  V  I  I  S  S  H  T  F  T  F  N  Y  V  V  I  L  C  L  T  T  S  C  D  V  L  *  Y  H  V  E  V  C  D  D  F  I  *  K  L  K  L  L  E  T  K  T  L  L  I  D  L  I  M  L  Y  I  S  I  V  C  V  Y  L  S  Q  Y  V  F  G  F  R  L  T  A  H  L  V  R  F  C  C  W  S  L  L  S  D  G  L  L  L  F </second_frame>
            <third_frame>   C  I  A  L  A  F  T  S  P  L   : K  Y  I  L  Y  *  A  Y  L  Y  I  Y  F  F  L  F  F  D  I  F  S  N  L  *  E  K  I  T  C  F  S  C  T  S  V  *  S  H  F  W  S  K  I  K  L  L  S  Q  L  L  L  C  S  L  R  P  M  P  C  L  S  L  P  L  L  G  L  H  E  A  C  Y  Y  F  S  V  V  K  Q  Q  I  R  P  A  K  I  E  S  D  K  L  M  V  L  L  G  F  T  C  N  I  I  I  N  V  F  V  *  L  R  S  G  K  S  K  Q  S  T  C  G  M  H  L  E  F  C  I  C  L  Y  V  R  N  M  *  S  S  H  H  I  L  L  L  L  I  M  *  L  Y  Y  V  S  P  P  L  V  M  C  S  D  T  M  L  K  C  V  M  I  S  Y  K  S  L  N  Y  *  R  L  R  H  F  *  L  T  *  L  C  Y  I  F  Q  *  F  V  Y  I  Y  H  S  M  C  S  V  L  D  S  P  P  I  L  *  G  S  A  A  G  L  C  *  A  T  A  C  S  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84282" stop="84497"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHFWSKIKLLSQLLLCSLRPMPCLSLPLLGLHEACYYFSVVKQQIRPAKIESDKLMVLLGFTCNIIINVFV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84175" stop="84369"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTFSIKHIYIYTSFCSSIYFQIYEKKSHVFHVQVFSHISGVRSSCFLNCFYAVYDRCLVCHCRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="88685" PGL_stop="84165"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88683" e_stop="88506"/>
            <exon e_start="87965" e_stop="87870"/>
            <exon e_start="87751" e_stop="87677"/>
            <exon e_start="87275" e_stop="87207"/>
            <exon e_start="86254" e_stop="86178"/>
            <exon e_start="86060" e_stop="85972"/>
            <exon e_start="85741" e_stop="85612"/>
            <exon e_start="85033" e_stop="84943"/>
            <exon e_start="84858" e_stop="84793"/>
            <exon e_start="84420" e_stop="84165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.522" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="0.970"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88683" e_stop="88506" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88505" i_stop="87966" i_length="540"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87965" e_stop="87870" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.994">
            <gDNA_intron_boundary i_start="87869" i_stop="87752" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87751" e_stop="87677" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="87676" i_stop="87276" i_length="401"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87275" e_stop="87207" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86254" e_stop="86178" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.916">
            <gDNA_intron_boundary i_start="86177" i_stop="86061" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="86060" e_stop="85972" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85741" e_stop="85612" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.980">
            <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="85033" e_stop="84943" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.957" acc_prob="0.522">
            <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="0.970">
            <gDNA_exon_boundary e_start="84858" e_stop="84793" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="84792" i_stop="84421" i_length="372"/>
          </intron>
          <exon e_serial="10" e_score="0.953">
            <gDNA_exon_boundary e_start="84420" e_stop="84165" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88683" stop="88506"/>
              <exon start="87965" stop="87870"/>
              <exon start="87751" stop="87677"/>
              <exon start="87275" stop="87207"/>
              <exon start="86254" stop="86178"/>
              <exon start="86060" stop="85972"/>
              <exon start="85741" stop="85612"/>
              <exon start="85033" stop="84948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88683" stop="88506"/>
              <exon start="87965" stop="87870"/>
              <exon start="87751" stop="87677"/>
              <exon start="87275" stop="87207"/>
              <exon start="86254" stop="86178"/>
              <exon start="86060" stop="85972"/>
              <exon start="85741" stop="85667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88683" stop="88506"/>
              <exon start="87965" stop="87870"/>
              <exon start="87751" stop="87677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88671" stop="88506"/>
              <exon start="87965" stop="87870"/>
              <exon start="87751" stop="87677"/>
              <exon start="87275" stop="87207"/>
              <exon start="86254" stop="86211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88671" stop="88506"/>
              <exon start="87965" stop="87870"/>
              <exon start="87751" stop="87702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88671" stop="88506"/>
              <exon start="87965" stop="87870"/>
              <exon start="87751" stop="87733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87719" stop="87677"/>
              <exon start="87275" stop="87207"/>
              <exon start="86254" stop="86178"/>
              <exon start="86060" stop="85972"/>
              <exon start="85741" stop="85612"/>
              <exon start="85033" stop="84943"/>
              <exon start="84858" stop="84793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86036" stop="85972"/>
              <exon start="85741" stop="85612"/>
              <exon start="85033" stop="84943"/>
              <exon start="84858" stop="84793"/>
              <exon start="84420" stop="84165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412187" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAG : AAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACG : ACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT : GCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT : GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGC : GCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG : TTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAG : ATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAG : AGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCG : GTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATCGGTCGTAGACTGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAGAAATGTGACTAAACACTTGTACATGAAAAACATGTGATTTTTTCTCATAAATTTGAAAATATATCGAAGAACAGAAAGAAGTATATATATAAATATGCTTAATAGAGAATGTATTCTGTTTTTTT</gDNA_template>
            <first_frame> V  K  F  Y  I  I  S  L  H  C  A  F  S  I  F  S  T  M  *  *  S  I  N  Y  F  W  K  I  E  L  Q  N  S  S  F  S  S  F  F  F  F  S  F  I  N  W  C  C  R  S  I  H  S  P  N  R  H  F  *   : E  R  *  *  C  R  K  R  G  A  *  S  A  S  *  N  R  L  V  Q  K  M  G  F  S  T  I  C  V  T  S  N   : D  I  S  *  R  A  D  N  S  R  N  K  E  R  R  E  P  C  N  P  K  C  Q  K  *   : C  S  F  S  V  Y  S  G  R  H  N  W  V  F  G  S  S  C  R  A  T  S  W   : *  L  G  F  L  R  S  I  L  D  W  E  H  I  F  S  S  F  G  N  R  K  Y  F  P  S  :  A  P  S  G  R  H  *  W  I  F  I  L  F  S  *  L  P  G  E  N  R  Q  T  *  S  S  S  F  L  S :   F  L  P  N  R  C  S  D  P  W  I  F  T  G  Y  W  E  R  A  C  Q  F  N  *  *  K  V  G  K  T  Y  L  Q  W  P  A  *  L  K  R  T  R  Q  :  I  G  S  G  S  D  G  R  A  S  S  R  R  A  K  V  *  *  S  C  R  S  I  S  *  P  F  H  S  S   : E  I  S  K  Q  E  Q  A  V  A  *  Q  R  P  A  A  E  P  Y  K  M  G   : G  L  I  C  C  F  T  T  E  K  *  *  Q  A  S  *  S  P  N  S  G  N  D  K  Q  G  I  G  R  R  L  H  R  S  N  *  E  S  S  L  I  L  L  Q  K  C  D  *  T  L  V  H  E  K  H  V  I  F  S  H  K  F  E  N  I  S  K  N  R  K  K  Y  I  Y  K  Y  A  *  *  R  M  Y  S  V  F   </first_frame>
            <second_frame>  S  N  S  T  S  S  L  F  T  A  P  S  Q  F  L  V  Q  C  N  N  P  L  I  I  S  G  K  L  S  F  K  I  R  A  S  A  A  S  S  S  S  P  S  S  T  G  V  V  D  L  S  T  L  R  T  A  I  S  K  :  K  D  S  N  A  V  K  E  A  L  D  Q  L  V  E  I  G  W  S  K  K  W  G  S  Q  P  Y  V  S  R  R  T  :  T  S  L  R  E  L  T  T  L  G  I  K  N  A  E  N  L  A  I  P  S  V  R  N  D  :  A  A  F  L  F  T  V  V  G  T  T  G  F  L  G  V  L  A  G  Q  L  P  G  :  D  W  G  F  F  V  P  Y  L  I  G  S  I  S  L  V  V  L  G  I  G  S  T  S  P  A :   L  L  Q  A  A  I  D  G  F  S  S  F  F  P  D  Y  Q  E  R  I  A  R  H  E  A  A  H  F  L   : V  S  Y  L  I  G  V  P  I  L  G  Y  S  L  D  I  G  K  E  H  V  N  L  I  D  E  R  L  E  K  L  I  Y  S  G  Q  L  D  S  K  E  L  D  R :   L  A  V  V  A  M  A  G  L  A  A  E  G  L  K  Y  D  K  V  V  G  Q  S  A  D  L  F  T  L  Q  :  R  F  L  N  R  S  K  P  S  L  S  K  D  Q  Q  Q  N  L  T  R  W  A  :  V  L  F  A  A  S  L  L  K  N  N  S  K  L  H  E  A  L  I  A  A  M  T  N  K  A  S  V  V  D  C  I  E  A  I  E  K  A  A  *  S  Y  S  R  N  V  T  K  H  L  Y  M  K  N  M  *  F  F  L  I  N  L  K  I  Y  R  R  T  E  R  S  I  Y  I  N  M  L  N  R  E  C  I  L  F  F  </second_frame>
            <third_frame>   Q  I  L  H  H  L  S  S  L  R  L  L  N  F  *  Y  N  V  I  I  H  *  L  F  L  E  N  *  A  S  K  F  E  L  Q  Q  L  L  L  L  L  L  H  Q  L  V  L  S  I  Y  P  L  S  E  P  P  F  L  R :   K  I  V  M  P  *  K  R  R  L  I  S  *  L  K  S  V  G  P  K  N  G  V  L  N  H  M  C  H  V  E  R :   H  L  L  E  S  *  Q  L  S  E  *  R  T  Q  R  T  L  Q  S  Q  V  S  E  M  M :   Q  L  F  C  L  Q  W  *  A  Q  L  G  F  W  E  F  L  Q  G  N  F  L  V :   I  G  V  S  S  F  H  T  *  L  G  A  Y  L  *  *  F  W  E  S  E  V  L  P  Q   : R  S  F  R  P  P  L  M  D  F  H  P  F  F  L  I  T  R  R  E  S  P  D  M  K  Q  L  I  S  *  :  F  P  T  *  *  V  F  R  S  L  D  I  H  W  I  L  G  K  S  M  S  I  *  L  M  K  G  W  K  N  L  S  T  V  A  S  L  T  Q  K  N  S  T   : D  W  Q  W  *  R  W  P  G  *  Q  Q  K  G  *  S  M  I  K  L  S  V  N  Q  L  T  F  S  L  F  R :   D  F  *  T  G  A  S  R  R  L  A  K  T  S  S  R  T  L  Q  D  G  R :   S  Y  L  L  L  H  Y  *  K  I  I  A  S  F  M  K  P  *  *  R  Q  *  Q  T  R  H  R  S  *  T  A  *  K  Q  L  R  K  Q  L  D  L  T  P  E  M  *  L  N  T  C  T  *  K  T  C  D  F  F  S  *  I  *  K  Y  I  E  E  Q  K  E  V  Y  I  *  I  C  L  I  E  N  V  F  C  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88682" stop="88506"/>
                    <exon start="87965" stop="87870"/>
                    <exon start="87751" stop="87677"/>
                    <exon start="87275" stop="87207"/>
                    <exon start="86254" stop="86178"/>
                    <exon start="86060" stop="85972"/>
                    <exon start="85741" stop="85612"/>
                    <exon start="85033" stop="84943"/>
                    <exon start="84858" stop="84793"/>
                    <exon start="84420" stop="84301"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNSTSSLFTAPSQFLVQCNNPLIISGKLSFKIRASAASSSSPSSTGVVDLSTLRTAISKKDSNAVKEALDQLVEIGWSKKWGSQPYVSRRTTSLRELTTLGIKNAENLAIPSVRNDAAFLFTVVGTTGFLGVLAGQLPGDWGFFVPYLIGSISLVVLGIGSTSPALLQAAIDGFSSFFPDYQERIARHEAAHFLVSYLIGVPILGYSLDIGKEHVNLIDERLEKLIYSGQLDSKELDRLAVVAMAGLAAEGLKYDKVVGQSADLFTLQRFLNRSKPSLSKDQQQNLTRWAVLFAASLLKNNSKLHEALIAAMTNKASVVDCIEAIEKAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88683" e_stop="88506"/>
            <exon e_start="87965" e_stop="87870"/>
            <exon e_start="87751" e_stop="87677"/>
            <exon e_start="87275" e_stop="87207"/>
            <exon e_start="86254" e_stop="84948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.922"/>
          <exon-intron don_prob="0.971" acc_prob="0.994" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="88683" e_stop="88506" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88505" i_stop="87966" i_length="540"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="87965" e_stop="87870" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.994">
            <gDNA_intron_boundary i_start="87869" i_stop="87752" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87751" e_stop="87677" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="87676" i_stop="87276" i_length="401"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87275" e_stop="87207" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86254" e_stop="84948" e_length="1307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88683" stop="88506"/>
              <exon start="87965" stop="87870"/>
              <exon start="87751" stop="87677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88671" stop="88506"/>
              <exon start="87965" stop="87870"/>
              <exon start="87751" stop="87677"/>
              <exon start="87275" stop="87207"/>
              <exon start="86254" stop="86211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88671" stop="88506"/>
              <exon start="87965" stop="87870"/>
              <exon start="87751" stop="87702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88671" stop="88506"/>
              <exon start="87965" stop="87870"/>
              <exon start="87751" stop="87733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87275" stop="87207"/>
              <exon start="86254" stop="85731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87267" stop="87207"/>
              <exon start="86254" stop="85515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87266" stop="87207"/>
              <exon start="86254" stop="85810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85548" stop="84948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAG : AAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACG : ACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT : GCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT : GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTC</gDNA_template>
            <first_frame> V  K  F  Y  I  I  S  L  H  C  A  F  S  I  F  S  T  M  *  *  S  I  N  Y  F  W  K  I  E  L  Q  N  S  S  F  S  S  F  F  F  F  S  F  I  N  W  C  C  R  S  I  H  S  P  N  R  H  F  *   : E  R  *  *  C  R  K  R  G  A  *  S  A  S  *  N  R  L  V  Q  K  M  G  F  S  T  I  C  V  T  S  N   : D  I  S  *  R  A  D  N  S  R  N  K  E  R  R  E  P  C  N  P  K  C  Q  K  *   : C  S  F  S  V  Y  S  G  R  H  N  W  V  F  G  S  S  C  R  A  T  S  W   : *  L  G  F  L  R  S  I  L  D  W  E  H  I  F  S  S  F  G  N  R  K  Y  F  P  S  V  S  K  D  F  R  C  S  S  D  T  N  N  A  L  Y  Y  L  F  S  *  A  F  S  T  A  C  R  S  L  W  L  I  L  L  F  I  M  *  A  P  S  G  R  H  *  W  I  F  I  L  F  S  *  L  P  G  E  N  R  Q  T  *  S  S  S  F  L  R  W  H  P  V  L  V  F  N  I  L  Y  F  Y  F  Y  L  A  M  I  M  T  *  V  E  L  K  *  N  I  E  D  S  Y  K  T  N  L  D  K  L  L  L  L  F  G  Y  D  N  D  I  E  A  *  L  L  L  L  L  C  F  C  G  S  I  N  F  P  L  L  S  R  T  M  S  I  S  V  S  Y  L  I  G  V  P  I  L  G  Y  S  L  D  I  G  K  E  H  V  N  L  I  D  E  R  L  E  K  L  I  Y  S  G  Q  L  D  S  K  E  L  D  R  Y  R  L  Q  K  N  L  F  F  N  Q  L  I  T  P  S  V  S  V  Y  A  A  P  F  D  F  A  Q  S  L  S  K  T  G  R  L  L  N  L  V  V  Y  T  K  P  *  V  F  V  W  L  *  I  I  S  L  S  V  K  K  F  L  M  L  G  C  F  *  L  L  K  K  *  H  S  F  W  D  R  L  R  L  K  K  N  G  V  T  *  I  V  T  Q  E  Y  L  L  *  K  A  R  M  *  C  F  S  Y  G  S  G  P  S  E  P  Y  K  M  S  L  I  S  T  N  N  *  F  *  S  Q  *  I  K  *  F  V  V  E  F  L  P  R  T  I  M  F  K  S  C  I  Y  L  C  *  L  Y  V  G  T  L  S  D  I  C  C  Y  L  Y  F  H  M  K  Y  H  C  F  *  N  F  H  R  K  Q  K  L  F  T  E  *  L  H  F  S  D  W  Q  W  *  R  W  P  G  *  Q  Q  K  G  *  S  M  I  K  L  S  V  N  Q  L  T  F  S  L </first_frame>
            <second_frame>  S  N  S  T  S  S  L  F  T  A  P  S  Q  F  L  V  Q  C  N  N  P  L  I  I  S  G  K  L  S  F  K  I  R  A  S  A  A  S  S  S  S  P  S  S  T  G  V  V  D  L  S  T  L  R  T  A  I  S  K  :  K  D  S  N  A  V  K  E  A  L  D  Q  L  V  E  I  G  W  S  K  K  W  G  S  Q  P  Y  V  S  R  R  T  :  T  S  L  R  E  L  T  T  L  G  I  K  N  A  E  N  L  A  I  P  S  V  R  N  D  :  A  A  F  L  F  T  V  V  G  T  T  G  F  L  G  V  L  A  G  Q  L  P  G  :  D  W  G  F  F  V  P  Y  L  I  G  S  I  S  L  V  V  L  G  I  G  S  T  S  P  A  *  V  K  I  L  G  V  L  L  I  L  I  M  H  Y  T  I  Y  S  V  E  L  F  L  L  H  A  G  R  Y  G  S  F  F  Y  S  L  C  R  L  L  Q  A  A  I  D  G  F  S  S  F  F  P  D  Y  Q  E  R  I  A  R  H  E  A  A  H  F  L  G  G  I  L  F  *  F  S  I  F  Y  T  F  I  F  I  W  L  *  *  *  H  E  L  S  L  N  E  T  L  K  I  H  I  R  R  T  S  T  S  Y  C  C  Y  L  V  M  I  M  T  S  R  H  S  C  Y  C  C  C  A  S  A  V  P  L  T  F  L  Y  *  A  V  Q  C  Q  F  Q  F  P  T  *  *  V  F  R  S  L  D  I  H  W  I  L  G  K  S  M  S  I  *  L  M  K  G  W  K  N  L  S  T  V  A  S  L  T  Q  K  N  S  T  G  I  D  F  K  R  I  S  S  S  I  N  *  L  L  L  L  S  Q  F  M  R  H  R  L  T  L  H  K  V  *  V  K  R  E  D  F  *  I  L  S  S  I  P  N  L  R  Y  L  C  G  C  K  L  F  H  *  A  *  K  S  F  *  C  *  V  V  F  S  Y  *  K  N  D  I  L  F  G  T  D  *  D  *  K  R  M  V  S  H  K  L  *  H  R  S  T  C  F  E  R  L  E  C  N  A  L  A  T  G  L  V  L  Q  N  P  I  K  C  H  *  *  V  Q  I  T  D  F  E  A  S  K  S  N  N  L  W  *  N  F  Y  H  E  P  *  C  S  N  P  V  S  T  S  A  S  Y  M  *  V  L  C  Q  T  S  A  A  I  Y  I  F  T  *  S  I  I  A  S  K  I  F  T  G  N  K  N  Y  L  L  S  S  Y  I  S  Q  I  G  S  G  S  D  G  R  A  S  S  R  R  A  K  V  *  *  S  C  R  S  I  S  *  P  F  H   </second_frame>
            <third_frame>   Q  I  L  H  H  L  S  S  L  R  L  L  N  F  *  Y  N  V  I  I  H  *  L  F  L  E  N  *  A  S  K  F  E  L  Q  Q  L  L  L  L  L  L  H  Q  L  V  L  S  I  Y  P  L  S  E  P  P  F  L  R :   K  I  V  M  P  *  K  R  R  L  I  S  *  L  K  S  V  G  P  K  N  G  V  L  N  H  M  C  H  V  E  R :   H  L  L  E  S  *  Q  L  S  E  *  R  T  Q  R  T  L  Q  S  Q  V  S  E  M  M :   Q  L  F  C  L  Q  W  *  A  Q  L  G  F  W  E  F  L  Q  G  N  F  L  V :   I  G  V  S  S  F  H  T  *  L  G  A  Y  L  *  *  F  W  E  S  E  V  L  P  Q  R  K  *  R  F  *  V  F  F  *  Y  *  *  C  I  I  L  S  I  Q  L  S  F  F  Y  C  M  Q  V  V  M  A  H  S  F  I  H  Y  V  G  S  F  R  P  P  L  M  D  F  H  P  F  F  L  I  T  R  R  E  S  P  D  M  K  Q  L  I  S  *  V  A  S  C  F  S  F  Q  Y  F  I  L  L  F  L  F  G  Y  D  N  D  M  S  *  A  *  M  K  H  *  R  F  I  *  D  E  P  R  Q  V  I  V  V  I  W  L  *  *  *  H  R  G  I  V  V  I  V  V  V  L  L  R  F  H  *  L  S  S  I  K  P  Y  N  V  N  F  S  F  L  P  N  R  C  S  D  P  W  I  F  T  G  Y  W  E  R  A  C  Q  F  N  *  *  K  V  G  K  T  Y  L  Q  W  P  A  *  L  K  R  T  R  Q  V  S  T  S  K  E  S  L  L  Q  S  I  N  Y  S  F  C  L  S  L  C  G  T  V  *  L  C  T  K  F  K  *  N  G  K  T  F  E  S  C  R  L  Y  Q  T  L  G  I  C  V  V  V  N  Y  F  I  K  R  K  K  V  F  N  V  R  L  F  L  V  I  K  K  M  T  F  F  L  G  Q  T  K  T  K  K  E  W  C  H  I  N  C  D  T  G  V  L  A  L  K  G  *  N  V  M  L  *  L  R  V  W  S  F  R  T  L  *  N  V  T  N  K  Y  K  *  L  I  L  K  P  V  N  Q  I  I  C  G  R  I  S  T  T  N  H  N  V  Q  I  L  Y  L  P  L  L  V  I  C  R  Y  F  V  R  H  L  L  L  F  I  F  S  H  E  V  S  L  L  L  K  F  S  P  E  T  K  I  I  Y  *  V  V  T  F  L  R  L  A  V  V  A  M  A  G  L  A  A  E  G  L  K  Y  D  K  V  V  G  Q  S  A  D  L  F  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88682" stop="88506"/>
                    <exon start="87965" stop="87870"/>
                    <exon start="87751" stop="87677"/>
                    <exon start="87275" stop="87207"/>
                    <exon start="86254" stop="86174"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNSTSSLFTAPSQFLVQCNNPLIISGKLSFKIRASAASSSSPSSTGVVDLSTLRTAISKKDSNAVKEALDQLVEIGWSKKWGSQPYVSRRTTSLRELTTLGIKNAENLAIPSVRNDAAFLFTVVGTTGFLGVLAGQLPGDWGFFVPYLIGSISLVVLGIGSTSPA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85811" stop="85473"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLLLCFCGSINFPLLSRTMSISVSYLIGVPILGYSLDIGKEHVNLIDERLEKLIYSGQLDSKELDRYRLQKNLFFNQLITPSVSVYAAPFDFAQSLSKTGRLLNLVVYTKP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86173" stop="85955"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKILGVLLILIMHYTIYSVELFLLHAGRYGSFFYSLCRLLQAAIDGFSSFFPDYQERIARHEAAHFLGGILF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="88685" e_stop="88506"/>
            <exon e_start="87751" e_stop="87677"/>
            <exon e_start="87275" e_stop="87207"/>
            <exon e_start="86254" e_stop="86178"/>
            <exon e_start="86060" e_stop="85972"/>
            <exon e_start="85741" e_stop="85612"/>
            <exon e_start="85033" e_stop="84943"/>
            <exon e_start="84858" e_stop="84793"/>
            <exon e_start="84420" e_stop="84165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.983"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.522" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="88685" e_stop="88506" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88505" i_stop="87752" i_length="754"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87751" e_stop="87677" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="87676" i_stop="87276" i_length="401"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87275" e_stop="87207" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86254" e_stop="86178" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.916">
            <gDNA_intron_boundary i_start="86177" i_stop="86061" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86060" e_stop="85972" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85741" e_stop="85612" e_length="130"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.980">
            <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85033" e_stop="84943" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.957" acc_prob="0.522">
            <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="84858" e_stop="84793" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="84792" i_stop="84421" i_length="372"/>
          </intron>
          <exon e_serial="9" e_score="0.953">
            <gDNA_exon_boundary e_start="84420" e_stop="84165" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88685" stop="88506"/>
              <exon start="87751" stop="87677"/>
              <exon start="87275" stop="87207"/>
              <exon start="86254" stop="86178"/>
              <exon start="86060" stop="85972"/>
              <exon start="85741" stop="85612"/>
              <exon start="85033" stop="84943"/>
              <exon start="84858" stop="84793"/>
              <exon start="84420" stop="84326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88684" stop="88506"/>
              <exon start="87751" stop="87677"/>
              <exon start="87275" stop="87207"/>
              <exon start="86254" stop="86178"/>
              <exon start="86060" stop="85972"/>
              <exon start="85741" stop="85612"/>
              <exon start="85033" stop="84943"/>
              <exon start="84858" stop="84793"/>
              <exon start="84420" stop="84374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88650" stop="88506"/>
              <exon start="87751" stop="87677"/>
              <exon start="87275" stop="87207"/>
              <exon start="86254" stop="86178"/>
              <exon start="86060" stop="85972"/>
              <exon start="85741" stop="85612"/>
              <exon start="85033" stop="84943"/>
              <exon start="84858" stop="84842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87719" stop="87677"/>
              <exon start="87275" stop="87207"/>
              <exon start="86254" stop="86178"/>
              <exon start="86060" stop="85972"/>
              <exon start="85741" stop="85612"/>
              <exon start="85033" stop="84943"/>
              <exon start="84858" stop="84793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86036" stop="85972"/>
              <exon start="85741" stop="85612"/>
              <exon start="85033" stop="84943"/>
              <exon start="84858" stop="84793"/>
              <exon start="84420" stop="84165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412187" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTCAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAG : ACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT : GCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT : GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGC : GCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG : TTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAG : ATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAG : AGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCG : GTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATCGGTCGTAGACTGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAGAAATGTGACTAAACACTTGTACATGAAAAACATGTGATTTTTTCTCATAAATTTGAAAATATATCGAAGAACAGAAAGAAGTATATATATAAATATGCTTAATAGAGAATGTATTCTGTTTTTTT</gDNA_template>
            <first_frame> M  S  N  S  T  S  S  L  F  T  A  P  S  Q  F  L  V  Q  C  N  N  P  L  I  I  S  G  K  L  S  F  K  I  R  A  S  A  A  S  S  S  S  P  S  S  T  G  V  V  D  L  S  T  L  R  T  A  I  S  K  :  T  S  L  R  E  L  T  T  L  G  I  K  N  A  E  N  L  A  I  P  S  V  R  N  D  :  A  A  F  L  F  T  V  V  G  T  T  G  F  L  G  V  L  A  G  Q  L  P  G  :  D  W  G  F  F  V  P  Y  L  I  G  S  I  S  L  V  V  L  G  I  G  S  T  S  P  A :   L  L  Q  A  A  I  D  G  F  S  S  F  F  P  D  Y  Q  E  R  I  A  R  H  E  A  A  H  F  L   : V  S  Y  L  I  G  V  P  I  L  G  Y  S  L  D  I  G  K  E  H  V  N  L  I  D  E  R  L  E  K  L  I  Y  S  G  Q  L  D  S  K  E  L  D  R :   L  A  V  V  A  M  A  G  L  A  A  E  G  L  K  Y  D  K  V  V  G  Q  S  A  D  L  F  T  L  Q  :  R  F  L  N  R  S  K  P  S  L  S  K  D  Q  Q  Q  N  L  T  R  W  A  :  V  L  F  A  A  S  L  L  K  N  N  S  K  L  H  E  A  L  I  A  A  M  T  N  K  A  S  V  V  D  C  I  E  A  I  E  K  A  A  *  S  Y  S  R  N  V  T  K  H  L  Y  M  K  N  M  *  F  F  L  I  N  L  K  I  Y  R  R  T  E  R  S  I  Y  I  N  M  L  N  R  E  C  I  L  F  F  </first_frame>
            <second_frame>  C  Q  I  L  H  H  L  S  S  L  R  L  L  N  F  *  Y  N  V  I  I  H  *  L  F  L  E  N  *  A  S  K  F  E  L  Q  Q  L  L  L  L  L  L  H  Q  L  V  L  S  I  Y  P  L  S  E  P  P  F  L  R :   H  L  L  E  S  *  Q  L  S  E  *  R  T  Q  R  T  L  Q  S  Q  V  S  E  M  M :   Q  L  F  C  L  Q  W  *  A  Q  L  G  F  W  E  F  L  Q  G  N  F  L  V :   I  G  V  S  S  F  H  T  *  L  G  A  Y  L  *  *  F  W  E  S  E  V  L  P  Q   : R  S  F  R  P  P  L  M  D  F  H  P  F  F  L  I  T  R  R  E  S  P  D  M  K  Q  L  I  S  *  :  F  P  T  *  *  V  F  R  S  L  D  I  H  W  I  L  G  K  S  M  S  I  *  L  M  K  G  W  K  N  L  S  T  V  A  S  L  T  Q  K  N  S  T   : D  W  Q  W  *  R  W  P  G  *  Q  Q  K  G  *  S  M  I  K  L  S  V  N  Q  L  T  F  S  L  F  R :   D  F  *  T  G  A  S  R  R  L  A  K  T  S  S  R  T  L  Q  D  G  R :   S  Y  L  L  L  H  Y  *  K  I  I  A  S  F  M  K  P  *  *  R  Q  *  Q  T  R  H  R  S  *  T  A  *  K  Q  L  R  K  Q  L  D  L  T  P  E  M  *  L  N  T  C  T  *  K  T  C  D  F  F  S  *  I  *  K  Y  I  E  E  Q  K  E  V  Y  I  *  I  C  L  I  E  N  V  F  C  F  F </second_frame>
            <third_frame>   V  K  F  Y  I  I  S  L  H  C  A  F  S  I  F  S  T  M  *  *  S  I  N  Y  F  W  K  I  E  L  Q  N  S  S  F  S  S  F  F  F  F  S  F  I  N  W  C  C  R  S  I  H  S  P  N  R  H  F  *   : D  I  S  *  R  A  D  N  S  R  N  K  E  R  R  E  P  C  N  P  K  C  Q  K  *   : C  S  F  S  V  Y  S  G  R  H  N  W  V  F  G  S  S  C  R  A  T  S  W   : *  L  G  F  L  R  S  I  L  D  W  E  H  I  F  S  S  F  G  N  R  K  Y  F  P  S  :  A  P  S  G  R  H  *  W  I  F  I  L  F  S  *  L  P  G  E  N  R  Q  T  *  S  S  S  F  L  S :   F  L  P  N  R  C  S  D  P  W  I  F  T  G  Y  W  E  R  A  C  Q  F  N  *  *  K  V  G  K  T  Y  L  Q  W  P  A  *  L  K  R  T  R  Q  :  I  G  S  G  S  D  G  R  A  S  S  R  R  A  K  V  *  *  S  C  R  S  I  S  *  P  F  H  S  S   : E  I  S  K  Q  E  Q  A  V  A  *  Q  R  P  A  A  E  P  Y  K  M  G   : G  L  I  C  C  F  T  T  E  K  *  *  Q  A  S  *  S  P  N  S  G  N  D  K  Q  G  I  G  R  R  L  H  R  S  N  *  E  S  S  L  I  L  L  Q  K  C  D  *  T  L  V  H  E  K  H  V  I  F  S  H  K  F  E  N  I  S  K  N  R  K  K  Y  I  Y  K  Y  A  *  *  R  M  Y  S  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88685" stop="88506"/>
                    <exon start="87751" stop="87677"/>
                    <exon start="87275" stop="87207"/>
                    <exon start="86254" stop="86178"/>
                    <exon start="86060" stop="85972"/>
                    <exon start="85741" stop="85612"/>
                    <exon start="85033" stop="84943"/>
                    <exon start="84858" stop="84793"/>
                    <exon start="84420" stop="84301"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>894</number_coding_nucleotides>
                  <number_encoded_amino_acids>298</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSNSTSSLFTAPSQFLVQCNNPLIISGKLSFKIRASAASSSSPSSTGVVDLSTLRTAISKTSLRELTTLGIKNAENLAIPSVRNDAAFLFTVVGTTGFLGVLAGQLPGDWGFFVPYLIGSISLVVLGIGSTSPALLQAAIDGFSSFFPDYQERIARHEAAHFLVSYLIGVPILGYSLDIGKEHVNLIDERLEKLIYSGQLDSKELDRLAVVAMAGLAAEGLKYDKVVGQSADLFTLQRFLNRSKPSLSKDQQQNLTRWAVLFAASLLKNNSKLHEALIAAMTNKASVVDCIEAIEKAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="87281" e_stop="87207"/>
            <exon e_start="86254" e_stop="86178"/>
            <exon e_start="86094" e_stop="85972"/>
            <exon e_start="85741" e_stop="85612"/>
            <exon e_start="85033" e_stop="84943"/>
            <exon e_start="84858" e_stop="84793"/>
            <exon e_start="84420" e_stop="84165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.522" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="0.970"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87281" e_stop="87207" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86254" e_stop="86178" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.954">
            <gDNA_intron_boundary i_start="86177" i_stop="86095" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86094" e_stop="85972" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85741" e_stop="85612" e_length="130"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.980">
            <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85033" e_stop="84943" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.957" acc_prob="0.522">
            <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="0.970">
            <gDNA_exon_boundary e_start="84858" e_stop="84793" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="84792" i_stop="84421" i_length="372"/>
          </intron>
          <exon e_serial="7" e_score="0.953">
            <gDNA_exon_boundary e_start="84420" e_stop="84165" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87281" stop="87207"/>
              <exon start="86254" stop="86178"/>
              <exon start="86094" stop="85972"/>
              <exon start="85741" stop="85612"/>
              <exon start="85033" stop="84943"/>
              <exon start="84858" stop="84793"/>
              <exon start="84420" stop="84260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86036" stop="85972"/>
              <exon start="85741" stop="85612"/>
              <exon start="85033" stop="84943"/>
              <exon start="84858" stop="84793"/>
              <exon start="84420" stop="84165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412187" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCAGGCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT : GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGC : GTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG : TTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAG : ATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAG : AGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCG : GTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATCGGTCGTAGACTGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAGAAATGTGACTAAACACTTGTACATGAAAAACATGTGATTTTTTCTCATAAATTTGAAAATATATCGAAGAACAGAAAGAAGTATATATATAAATATGCTTAATAGAGAATGTATTCTGTTTTTTT</gDNA_template>
            <first_frame> M  Q  A  A  F  L  F  T  V  V  G  T  T  G  F  L  G  V  L  A  G  Q  L  P  G  :  D  W  G  F  F  V  P  Y  L  I  G  S  I  S  L  V  V  L  G  I  G  S  T  S  P  A :   S  L  W  L  I  L  L  F  I  M  *  A  P  S  G  R  H  *  W  I  F  I  L  F  S  *  L  P  G  E  N  R  Q  T  *  S  S  S  F  L  S :   F  L  P  N  R  C  S  D  P  W  I  F  T  G  Y  W  E  R  A  C  Q  F  N  *  *  K  V  G  K  T  Y  L  Q  W  P  A  *  L  K  R  T  R  Q  :  I  G  S  G  S  D  G  R  A  S  S  R  R  A  K  V  *  *  S  C  R  S  I  S  *  P  F  H  S  S   : E  I  S  K  Q  E  Q  A  V  A  *  Q  R  P  A  A  E  P  Y  K  M  G   : G  L  I  C  C  F  T  T  E  K  *  *  Q  A  S  *  S  P  N  S  G  N  D  K  Q  G  I  G  R  R  L  H  R  S  N  *  E  S  S  L  I  L  L  Q  K  C  D  *  T  L  V  H  E  K  H  V  I  F  S  H  K  F  E  N  I  S  K  N  R  K  K  Y  I  Y  K  Y  A  *  *  R  M  Y  S  V  F   </first_frame>
            <second_frame>  C  R  Q  L  F  C  L  Q  W  *  A  Q  L  G  F  W  E  F  L  Q  G  N  F  L  V :   I  G  V  S  S  F  H  T  *  L  G  A  Y  L  *  *  F  W  E  S  E  V  L  P  Q   : R  R  Y  G  S  F  F  Y  S  L  C  R  L  L  Q  A  A  I  D  G  F  S  S  F  F  P  D  Y  Q  E  R  I  A  R  H  E  A  A  H  F  L   : V  S  Y  L  I  G  V  P  I  L  G  Y  S  L  D  I  G  K  E  H  V  N  L  I  D  E  R  L  E  K  L  I  Y  S  G  Q  L  D  S  K  E  L  D  R :   L  A  V  V  A  M  A  G  L  A  A  E  G  L  K  Y  D  K  V  V  G  Q  S  A  D  L  F  T  L  Q  :  R  F  L  N  R  S  K  P  S  L  S  K  D  Q  Q  Q  N  L  T  R  W  A  :  V  L  F  A  A  S  L  L  K  N  N  S  K  L  H  E  A  L  I  A  A  M  T  N  K  A  S  V  V  D  C  I  E  A  I  E  K  A  A  *  S  Y  S  R  N  V  T  K  H  L  Y  M  K  N  M  *  F  F  L  I  N  L  K  I  Y  R  R  T  E  R  S  I  Y  I  N  M  L  N  R  E  C  I  L  F  F  </second_frame>
            <third_frame>   A  G  S  F  S  V  Y  S  G  R  H  N  W  V  F  G  S  S  C  R  A  T  S  W   : *  L  G  F  L  R  S  I  L  D  W  E  H  I  F  S  S  F  G  N  R  K  Y  F  P  S  :  V  V  M  A  H  S  F  I  H  Y  V  G  S  F  R  P  P  L  M  D  F  H  P  F  F  L  I  T  R  R  E  S  P  D  M  K  Q  L  I  S  *  :  F  P  T  *  *  V  F  R  S  L  D  I  H  W  I  L  G  K  S  M  S  I  *  L  M  K  G  W  K  N  L  S  T  V  A  S  L  T  Q  K  N  S  T   : D  W  Q  W  *  R  W  P  G  *  Q  Q  K  G  *  S  M  I  K  L  S  V  N  Q  L  T  F  S  L  F  R :   D  F  *  T  G  A  S  R  R  L  A  K  T  S  S  R  T  L  Q  D  G  R :   S  Y  L  L  L  H  Y  *  K  I  I  A  S  F  M  K  P  *  *  R  Q  *  Q  T  R  H  R  S  *  T  A  *  K  Q  L  R  K  Q  L  D  L  T  P  E  M  *  L  N  T  C  T  *  K  T  C  D  F  F  S  *  I  *  K  Y  I  E  E  Q  K  E  V  Y  I  *  I  C  L  I  E  N  V  F  C  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86205" stop="86178"/>
                    <exon start="86094" stop="85972"/>
                    <exon start="85741" stop="85612"/>
                    <exon start="85033" stop="84943"/>
                    <exon start="84858" stop="84793"/>
                    <exon start="84420" stop="84301"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FWESEVLPQRRYGSFFYSLCRLLQAAIDGFSSFFPDYQERIARHEAAHFLVSYLIGVPILGYSLDIGKEHVNLIDERLEKLIYSGQLDSKELDRLAVVAMAGLAAEGLKYDKVVGQSADLFTLQRFLNRSKPSLSKDQQQNLTRWAVLFAASLLKNNSKLHEALIAAMTNKASVVDCIEAIEKAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="92977" PGL_stop="90875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92977" e_stop="92918"/>
            <exon e_start="92093" e_stop="91869"/>
            <exon e_start="91094" e_stop="90875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.796" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92977" e_stop="92918" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.796" acc_prob="0.995">
            <gDNA_intron_boundary i_start="92917" i_stop="92094" i_length="824"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92093" e_stop="91869" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="91868" i_stop="91095" i_length="774"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="91094" e_stop="90875" e_length="220"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92977" stop="92918"/>
              <exon start="92093" stop="91869"/>
              <exon start="91094" stop="90875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311489" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAGTTTCTTTATATTTATTTTCCTTGTTCATACTCTTACAATGGAATATCACAAAGAG : AAGAAGAATGGACCATGGCTATCTGTGCCACAATTTGGACATTGGGATCAAAAGGGTGTCTACCCTGACTACTCAATGGATTTTTCTAAAATAAGAGAAAATAGGAAACAAAACAAAAAGGACTTATCAAGAGCCAGTTTTGGAAATGAGAATGACCTCATTTTCTCTACCAAAAGTGATGCAAATGAGAATGATCATCATTACCATCAAAACCAATCTACAACT : AGGATGAGAAGGATCTTTAGATATTTCAATTGCTGTGGAAAAGCTTGAAGTTCATGGAATTGATTTTTCATCCAATTTCCTTGTAATGAAAATATAGTAATTTGTGATTTCTACCTAAGTTTTGAGTGACTTTTATAAGAAATAGGAAAATGTTATAAATTTTGGAAATTGTGGTGATTGTTTCTTAACATCCTTTGCTTCTCTTGGGTACATTCGAGAT</gDNA_template>
            <first_frame> N  S  F  F  I  F  I  F  L  V  H  T  L  T  M  E  Y  H  K  E  :  K  K  N  G  P  W  L  S  V  P  Q  F  G  H  W  D  Q  K  G  V  Y  P  D  Y  S  M  D  F  S  K  I  R  E  N  R  K  Q  N  K  K  D  L  S  R  A  S  F  G  N  E  N  D  L  I  F  S  T  K  S  D  A  N  E  N  D  H  H  Y  H  Q  N  Q  S  T  T  :  R  M  R  R  I  F  R  Y  F  N  C  C  G  K  A  *  S  S  W  N  *  F  F  I  Q  F  P  C  N  E  N  I  V  I  C  D  F  Y  L  S  F  E  *  L  L  *  E  I  G  K  C  Y  K  F  W  K  L  W  *  L  F  L  N  I  L  C  F  S  W  V  H  S  R  </first_frame>
            <second_frame>  I  V  S  L  Y  L  F  S  L  F  I  L  L  Q  W  N  I  T  K  R :   R  R  M  D  H  G  Y  L  C  H  N  L  D  I  G  I  K  R  V  S  T  L  T  T  Q  W  I  F  L  K  *  E  K  I  G  N  K  T  K  R  T  Y  Q  E  P  V  L  E  M  R  M  T  S  F  S  L  P  K  V  M  Q  M  R  M  I  I  I  T  I  K  T  N  L  Q  L :   G  *  E  G  S  L  D  I  S  I  A  V  E  K  L  E  V  H  G  I  D  F  S  S  N  F  L  V  M  K  I  *  *  F  V  I  S  T  *  V  L  S  D  F  Y  K  K  *  E  N  V  I  N  F  G  N  C  G  D  C  F  L  T  S  F  A  S  L  G  Y  I  R  D </second_frame>
            <third_frame>   *  F  L  Y  I  Y  F  P  C  S  Y  S  Y  N  G  I  S  Q  R   : E  E  E  W  T  M  A  I  C  A  T  I  W  T  L  G  S  K  G  C  L  P  *  L  L  N  G  F  F  *  N  K  R  K  *  E  T  K  Q  K  G  L  I  K  S  Q  F  W  K  *  E  *  P  H  F  L  Y  Q  K  *  C  K  *  E  *  S  S  L  P  S  K  P  I  Y  N   : *  D  E  K  D  L  *  I  F  Q  L  L  W  K  S  L  K  F  M  E  L  I  F  H  P  I  S  L  *  *  K  Y  S  N  L  *  F  L  P  K  F  *  V  T  F  I  R  N  R  K  M  L  *  I  L  E  I  V  V  I  V  S  *  H  P  L  L  L  L  G  T  F  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92977" stop="92918"/>
                    <exon start="92093" stop="91869"/>
                    <exon start="91094" stop="91047"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSFFIFIFLVHTLTMEYHKEKKNGPWLSVPQFGHWDQKGVYPDYSMDFSKIRENRKQNKKDLSRASFGNENDLIFSTKSDANENDHHYHQNQSTTRMRRIFRYFNCCGKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="108764" PGL_stop="105095"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108764" e_stop="108441"/>
            <exon e_start="105232" e_stop="105095"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.957"/>
          <exon-only e_score="0.891"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="108764" e_stop="108441" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108440" i_stop="105233" i_length="3208"/>
          </intron>
          <exon e_serial="2" e_score="0.891">
            <gDNA_exon_boundary e_start="105232" e_stop="105095" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108764" stop="108441"/>
              <exon start="105232" stop="105095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTTAGAACCTTGAGTATGGGTAATGAGACTGTTTCTAGGGTGGTTGATATTGGTAAAATTTGTTTGGAAACTAGTATTTGGAACTAAACTAGTTTTGAACAATGTGAAACATGCTCCTGATGTTCGTCTGCACCTAATTTCTGTTGGTGTTTTAGATGATGAAGGATATGTTAGTACCAACGGTGATGGAAAATGGAAGCTCATTAAGGGTTCCTTGATTGTGGCTCATGGTAACAAACGTCGTGGTCTATACTGGACTACGGCCTCTGCTTGTGTTGATATGGTGAATGCGGTTGAGAGCGATAACTCTTCAACATTATG : GCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTTATTTTCCCATTTTATTTTCATTACTTTTACAATATTTACTTTTGTGCTTGTCCGCGTTTTCCCAACAAGAA</gDNA_template>
            <first_frame> D  F  R  T  L  S  M  G  N  E  T  V  S  R  V  V  D  I  G  K  I  C  L  E  T  S  I  W  N  *  T  S  F  E  Q  C  E  T  C  S  *  C  S  S  A  P  N  F  C  W  C  F  R  *  *  R  I  C  *  Y  Q  R  *  W  K  M  E  A  H  *  G  F  L  D  C  G  S  W  *  Q  T  S  W  S  I  L  D  Y  G  L  C  L  C  *  Y  G  E  C  G  *  E  R  *  L  F  N  I  M  :  A  P  L  G  P  W  F  F  P  L  F  R  R  V  S  T  *  N  S  W  C  R  Y  F  P  I  L  F  S  L  L  L  Q  Y  L  L  L  C  L  S  A  F  S  Q  Q  E </first_frame>
            <second_frame>  I  L  E  P  *  V  W  V  M  R  L  F  L  G  W  L  I  L  V  K  F  V  W  K  L  V  F  G  T  K  L  V  L  N  N  V  K  H  A  P  D  V  R  L  H  L  I  S  V  G  V  L  D  D  E  G  Y  V  S  T  N  G  D  G  K  W  K  L  I  K  G  S  L  I  V  A  H  G  N  K  R  R  G  L  Y  W  T  T  A  S  A  C  V  D  M  V  N  A  V  E  S  D  N  S  S  T  L  W :   L  L  L  A  R  G  F  F  P  Y  S  E  G  F  P  R  K  I  L  G  V  V  I  F  P  F  Y  F  H  Y  F  Y  N  I  Y  F  C  A  C  P  R  F  P  N  K   </second_frame>
            <third_frame>   F  *  N  L  E  Y  G  *  *  D  C  F  *  G  G  *  Y  W  *  N  L  F  G  N  *  Y  L  E  L  N  *  F  *  T  M  *  N  M  L  L  M  F  V  C  T  *  F  L  L  V  F  *  M  M  K  D  M  L  V  P  T  V  M  E  N  G  S  S  L  R  V  P  *  L  W  L  M  V  T  N  V  V  V  Y  T  G  L  R  P  L  L  V  L  I  W  *  M  R  L  R  A  I  T  L  Q  H  Y   : G  S  S  W  P  V  V  F  S  L  I  Q  K  G  F  H  V  K  F  L  V  S  L  F  S  H  F  I  F  I  T  F  T  I  F  T  F  V  L  V  R  V  F  P  T  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108748" stop="108441"/>
                    <exon start="105232" stop="105097"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWVMRLFLGWLILVKFVWKLVFGTKLVLNNVKHAPDVRLHLISVGVLDDEGYVSTNGDGKWKLIKGSLIVAHGNKRRGLYWTTASACVDMVNAVESDNSSTLWLLLARGFFPYSEGFPRKILGVVIFPFYFHYFYNIYFCACPRFPNK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 104 chains have been computed
$ 
$ memory statistics:
$ 182392 bytes spliced alignments in total
$ 33 spliced alignments have been stored
$ 5527 bytes was the average size of a spliced alignment
$ 16256 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1806 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 132 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:29:41
-->
