<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:29:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568388" ref_strand="+" ref_description="SGN-U568388 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>gcaccttacaatatttaatctcttatatataagcttatttgatccaaagggagataatagctaacaagaaacaaaagatggctgagttcattgaagatacaaagaacaagaatgaagatccatccataagcattgtttctgatggaaaatcttctaatgaaccatcaaaagttgaccaagtagtagaaacacaagcagaaaatagtacacaaaatcaagaaaaagaaaatattattgctcaacaaggtcaagaagtagataaatctaaagaaaattctcaaaaacaagaacaagaacaaaccgaagaagaagaagaggaggaggaaaatgctaatgaagaggacagagcaaatttttcaacacgtccaggaaaaagatcagctcctaaacctaagactggttgagattaattatttcaatattgtgataattatttcaacaagcctagctattttttctagggttttattttggtttgttcttctcatttttaatattgtaatgtgtaaggaatattcttcttgtttctttgtttgtttttctcttccttttttttttttataaatatggtaatgattaatatatttttttgaaaaaatgtcataagaaataattaaattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="1581" stop="3429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1881" g_stop="2039" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2040" i_stop="2664" i_length="625">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2665" g_stop="3129" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="624" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-U568388" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1881" e_stop="2039"/>
          <exon e_start="2665" e_stop="3129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCTTACAATATTTAATCTCTTATATATAAGCTTATTTGATCCAAAGGGAGATAATAGCTAACAAGAAACAAAAGATGGCTGAGTTCATTGAAGATACAAAGAACAAGAATGAAGATCCATCCATAAGCATTGTTTCTGATGGAAAATCTTCTAATGGTAAGGGTTGAATATGTCGAAAATATCAAAATATTACATTTTTTTTGTAATTTTAAATATGTCATGTTGTAACGGTATTTTCTAATGGCCGAGTTCAATTTATTTTTTATTTTTTTCAATTTTCACACTATTGTGTTGTTTAGCATTGAAATGATTGAAATTATATTGAAGTATTTGAAATTATATTGAAATATATGATCATTTCATGCGTTGTTTTTGTCTTATTTTATAGTTATGTCATATTAGTTTCTATTAAATGTTGGAAAACGTATTATCATTTTAGCCTTTAGGTTTGAGAAAATACTACAATTCTTTTCATTTAATAAAGTGAAAAACTCTCCATATAGAACTTTTAAAAATATTTTATTGCACTATTTCCCCAACTTCTAGTTGGCCCATGATCTTTCACATGAGTATTATCTAAAAGTTTTGAATTGTTAATGATAACACATCATTATATATATTTAATTACATCTTCAATATAATATTTTCTTGAAATAATTTAAATACATATGTGTGTTCAATTTCTCATTCAATAAAGTGAAAAAACTCTTCTGTAAGATTGATCGAACTTCTTTAAATTTTTTTTTCATACTTTTAATATATATGTGTTCAATTTTTTCAGAACCATCAAAAGTTGACCAAGTAGTAGAAACACAAGCAGAAAATAGTACACAAAATCAAGAAAAAGAAAATATTATTGCTCAACAAGGTCAAGAAGTAGATAAATCTAAAGAAAATTCTCAAAAACAAGAACAAGAACAAACCGAAGAAGAAGAAGAGGAGGAGGAAAATGCTAATGAAGAGGACAGAGCAAATTTTTCAACACGTCCAGGAAAAAGATCAGCTCCTAAACCTAAGACTGGTTGAGATTAATTATTTCAATATTGTGATAATTATTTCAACAAGCCTAGCTATTTTTTCTAGGGTTTTATTTTGGTTTGTTCTTCTCATTTTTAATATTGTAATGTGTAAGGAATATTCTTCTTGTTTCTTTGTTTGTTTTTCTCTTCCTTTTTTTTTTTTATAAATATGGTAATGATTAATATATTTTTTTGAAAAAATGTCATAAGAAATAATTAAATTCTTT</genome_strand>
        <mrna_strand>GCACCTTACAATATTTAATCTCTTATATATAAGCTTATTTGATCCAAAGGGAGATAATAGCTAACAAGAAACAAAAGATGGCTGAGTTCATTGAAGATACAAAGAACAAGAATGAAGATCCATCCATAAGCATTGTTTCTGATGGAAAATCTTCTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCATCAAAAGTTGACCAAGTAGTAGAAACACAAGCAGAAAATAGTACACAAAATCAAGAAAAAGAAAATATTATTGCTCAACAAGGTCAAGAAGTAGATAAATCTAAAGAAAATTCTCAAAAACAAGAACAAGAACAAACCGAAGAAGAAGAAGAGGAGGAGGAAAATGCTAATGAAGAGGACAGAGCAAATTTTTCAACACGTCCAGGAAAAAGATCAGCTCCTAAACCTAAGACTGGTTGAGATTAATTATTTCAATATTGTGATAATTATTTCAACAAGCCTAGCTATTTTTTCTAGGGTTTTATTTTGGTTTGTTCTTCTCATTTTTAATATTGTAATGTGTAAGGAATATTCTTCTTGTTTCTTTGTTTGTTTTTCTCTTCCTTTTTTTTTTTTATAAATATGGTAATGATTAATATATTTTTTTGAAAAAATGTCATAAGAAATAATTAAATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571024" ref_strand="+" ref_description="SGN-U571024 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>gataaaaatggctaatttcttcatagatataaagaagattgaagatttgtttgtatacattgtttcttgtggaaaatcttctaaagaaggagaagagaatgatggaggaagagcaaatgtttcaagacctccaggccaaagaccagctcctaggcctcagactggtcgataataattaatgttagtgattattatttcaaaaaactttgttgttttatgataaaaaataattaatgttatgatattttttaagattgtaattcttaatctgttttaaaaagaacaattaaattgtgcaacatttatttgtacaattacacccatatatatgtaatatatacctttttatcaatttgtagtctatgtgtgacttgtttatacacgtatatacaattacatactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="6577" stop="7688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6876" g_stop="6961" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6962" i_stop="7069" i_length="108">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7070" g_stop="7388" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="405" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-U571024" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6876" e_stop="6961"/>
          <exon e_start="7070" e_stop="7388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAAATGGCTAATTTCTTCATAGATATAAAGAAGATTGAAGATTTGTTTGTATACATTGTTTCTTGTGGAAAATCTTCTAAAGGTAACATCACTTAGAGATAATACACTTTTATTCGTTTAATTATTACGTTTTTTAACATACTTTTTTTTTGAAATAATAAAATGATTGTGATGTACCAAAAAAATGTAGAAGGAGAAGAGAATGATGGAGGAAGAGCAAATGTTTCAAGACCTCCAGGCCAAAGACCAGCTCCTAGGCCTCAGACTGGTCGATAATAATTAATGTTAGTGATTATTATTTCAAAAAACTTTGTTGTTTTATGATAAAAAATAATTAATGTTATGATATTTTTTAAGATTGTAATTCTTAATCTGTTTTAAAAAGAACAATTAAATTGTGCAACATTTATTTGTACAATTACACCCATATATATGTAATATATACCTTTTTATCAATTTGTAGTCTATGTGTGACTTGTTTATACACGTATATACAATTACATACTCTC</genome_strand>
        <mrna_strand>GATAAAAATGGCTAATTTCTTCATAGATATAAAGAAGATTGAAGATTTGTTTGTATACATTGTTTCTTGTGGAAAATCTTCTAAAG............................................................................................................AAGGAGAAGAGAATGATGGAGGAAGAGCAAATGTTTCAAGACCTCCAGGCCAAAGACCAGCTCCTAGGCCTCAGACTGGTCGATAATAATTAATGTTAGTGATTATTATTTCAAAAAACTTTGTTGTTTTATGATAAAAAATAATTAATGTTATGATATTTTTTAAGATTGTAATTCTTAATCTGTTTTAAAAAGAACAATTAAATTGTGCAACATTTATTTGTACAATTACACCCATATATATGTAATATATACCTTTTTATCAATTTGTAGTCTATGTGTGACTTGTTTATACACGTATATACAATTACATACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576025" ref_strand="+" ref_description="SGN-U576025 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>caggtgaatgctaattatatttctccaactatatattatattttaaggaacaagtatgtattgaacctttcaacatttatgatctaaaattaagggagataatagctaaggggaaaaagcaagatggccattttcctgtaagatacgaagaatcaagatatattcaaaaaccttgcttctaatggtaagagtgagtaattaaaaactatcatcctatctacatatatatactcatttcatcatatcattgtccttgatatcaattgttgggctaaaataacgtaacatttaatatattatttatatttggtgtgatatatatagtggcggattcagaattttcatttagagggtttaaataataaaagtataaacgtgtaaataagtctttcggaatgggacccttgaatttttttgggtttaaaaccacagttttagcgcgtagattcgaactaggggcgtccagcttaatattctggggtcttgccactgaaccatctatttctatttgttattgaaggggttcaaaatatatgaatctacaggaatacggaaaatttatcttatatatatcttatatttttttgccgagggatggaccctacatgggtccgccctgtacaagatcaagaaaatataagtactccctctattttacaaagaatgatctggtttgacttggtacggagtttaaaaatataaagaatttttttgaatttttatggtcctaaattatagttagatcaaatgtacaaattgttctttgatcttgtggccttaaacatgtcacgtggaaagttaaaattaaaataataccataaaaaagaaagagattactttttttgaaacagactaaaaaaataaagtcattcttcttgaaacggactgagtaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="15362" stop="16853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15659" g_stop="16553" g_length="895"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="895" r_length="895" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-U576025" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15659" e_stop="16553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGTGAATGCTAATTATATTTCTCCAACTATATATTATATTTTAAGGAACAAGTATGTATTGAACCTTTCAACATTTATGATCTAAAATTAAGGGAGATAATAGCTAAGGGGAAAAAGCAAGATGGCCATTTTCCTGTAAGATACGAAGAATCAAGATATATTCAAAAACCTTGCTTCTAATGGTAAGAGTGAGTAATTAAAAACTATCATCCTATCTACATATATATACTCATTTCATCATATCATTGTCCTTGATATCAATTGTTGGGCTAAAATAACGTAACATTTAATATATTATTTATATTTGGTGTGATATATATAGTGGCGGATTCAGAATTTTCATTTAGAGGGTTTAAATAATAAAAGTATAAACGTGTAAATAAGTCTTTCGGAATGGGACCCTTGAATTTTTTTGGGTTTAAAACCACAGTTTTAGCGCGTAGATTCGAACTAGGGGCGTCCAGCTTAATATTCTGGGGTCTTGCCACTGAACCATCTATTTCTATTTGTTATTGAAGGGGTTCAAAATATATGAATCTACAGGAATACGGAAAATTTATCTTATATATATCTTATATTTTTTTGCCGAGGGATGGACCCTACATGGGTCCGCCCTGTACAAGATCAAGAAAATATAAGTACTCCCTCTATTTTACAAAGAATGATCTGGTTTGACTTGGTACGGAGTTTAAAAATATAAAGAATTTTTTTGAATTTTTATGGTCCTAAATTATAGTTAGATCAAATGTACAAATTGTTCTTTGATCTTGTGGCCTTAAACATGTCACGTGGAAAGTTAAAATTAAAATAATACCATAAAAAAGAAAGAGATTACTTTTTTTGAAACAGACTAAAAAAATAAAGTCATTCTTTTTGAAACGGACTGAGTAATA</genome_strand>
        <mrna_strand>CAGGTGAATGCTAATTATATTTCTCCAACTATATATTATATTTTAAGGAACAAGTATGTATTGAACCTTTCAACATTTATGATCTAAAATTAAGGGAGATAATAGCTAAGGGGAAAAAGCAAGATGGCCATTTTCCTGTAAGATACGAAGAATCAAGATATATTCAAAAACCTTGCTTCTAATGGTAAGAGTGAGTAATTAAAAACTATCATCCTATCTACATATATATACTCATTTCATCATATCATTGTCCTTGATATCAATTGTTGGGCTAAAATAACGTAACATTTAATATATTATTTATATTTGGTGTGATATATATAGTGGCGGATTCAGAATTTTCATTTAGAGGGTTTAAATAATAAAAGTATAAACGTGTAAATAAGTCTTTCGGAATGGGACCCTTGAATTTTTTTGGGTTTAAAACCACAGTTTTAGCGCGTAGATTCGAACTAGGGGCGTCCAGCTTAATATTCTGGGGTCTTGCCACTGAACCATCTATTTCTATTTGTTATTGAAGGGGTTCAAAATATATGAATCTACAGGAATACGGAAAATTTATCTTATATATATCTTATATTTTTTTGCCGAGGGATGGACCCTACATGGGTCCGCCCTGTACAAGATCAAGAAAATATAAGTACTCCCTCTATTTTACAAAGAATGATCTGGTTTGACTTGGTACGGAGTTTAAAAATATAAAGAATTTTTTTGAATTTTTATGGTCCTAAATTATAGTTAGATCAAATGTACAAATTGTTCTTTGATCTTGTGGCCTTAAACATGTCACGTGGAAAGTTAAAATTAAAATAATACCATAAAAAAGAAAGAGATTACTTTTTTTGAAACAGACTAAAAAAATAAAGTCATTCTTCTTGAAACGGACTGAGTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603567" ref_strand="+" ref_description="SGN-U603567 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tttaacctaactcaatgacataatttctgactaatagatatgaaatgacattccttagtatgactgtacactgaatatgagcagcgtacacaaatgaaaggatccaagattacgtataaattaatattcttttactagcaataatttgaagcacatgatcctgaacaattattatgaatttaattgtcttaaatgttaggggggggtatttttatttttgtcttaaatgatagggaggggatattttactcttttggtcttttctaaaaataaataatcatgaaatgacttctcaactttatttatattatagctattttaatttatttaagactaagaaggaaagtgtatttaggagcggagttatcttgaacgaaggatgattcattatacactttttttatatgtgatgtttagaagttaaatggtagatattataattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="19126" stop="20170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19426" g_stop="19870" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-U603567" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19426" e_stop="19870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACCTAACTCAATGACATAATTTCTGACTAATAGATATGAAATGACATTCCTTAGTATGACTGTACACTGAATATGAGCAGCGTACACAAATGAAAGGATCCAAGATTACGTATAAATTAATATTCTTTTACTAGCAATAATTTGAAGCACATGATCCTGAACAATTATTATGAATTTAATTGTCTTAAATGTTAGGTGGGTTTATTTTTATTTTTGTCTTAAATGATAGGTAGGGTATATTTTACTCTTTTGTTCTTTTCTAAAAATAAATAATCATGAAATGACTTCTCAACTTTATTTATATTATAGCTATTTTAATTTATTTAAGACTAAGAAGGAAAGTATATTTAGGAGCGGAGTTATCTTGAACGAAGGATGATTCATTATACACTTTTTTTATATGTGATGTTTAGAAGTTAAATGTTAGATATTATAATTATC</genome_strand>
        <mrna_strand>TTTAACCTAACTCAATGACATAATTTCTGACTAATAGATATGAAATGACATTCCTTAGTATGACTGTACACTGAATATGAGCAGCGTACACAAATGAAAGGATCCAAGATTACGTATAAATTAATATTCTTTTACTAGCAATAATTTGAAGCACATGATCCTGAACAATTATTATGAATTTAATTGTCTTAAATGTTAGGGGGGGGTATTTTTATTTTTGTCTTAAATGATAGGGAGGGGATATTTTACTCTTTTGGTCTTTTCTAAAAATAAATAATCATGAAATGACTTCTCAACTTTATTTATATTATAGCTATTTTAATTTATTTAAGACTAAGAAGGAAAGTGTATTTAGGAGCGGAGTTATCTTGAACGAAGGATGATTCATTATACACTTTTTTTATATGTGATGTTTAGAAGTTAAATGGTAGATATTATAATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583599" ref_strand="+" ref_description="SGN-U583599 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147818473|emb|CAN74118.1| (e_value=1e-30) hypothetical; (*ATH) AT1G03020.1 (e_value=1e-30) | Symbol: None | glutaredoxin family protein, contains INTERPRO Domain IPR002109, Glutaredoxin (thioltransferase) | chr1:698207-698515 REVERSE | Aliases: F10O3.16, F10O3_16; (*SWP) sp|Q9SA68|GRXS1_ARATH (e_value=1e-29) Putative monothiol glutaredoxin-S1 OS=Arabidopsis thaliana GN=GRXS1; ">
      <seq>taagtcttgggcatttggcaaaactactcataatttaataatttcttgaagttgtataaacatatggatatggtgatgaagttgggaacatcaagcgcggtggtgatattcacaaagagtagttgttgcatttctcatagcattgaaaccctaatccgtagctttggagcaaaccctaccgtttacgagcttgatacacatccaaatgggaagcaaatggagaaggcattgatggagctagggtgtcaaccaagtgtaccaacaatatttatagggaaagagttagttggtggtgcaaatgagataatgagccttaatgtgaggggcaaacttaaacaattgctcattagggctaatgccatttgggtataaaaagtaattatataataacaagcgtatttggaggtttttatataataaatatatacaacttatacatagagtcttttagcttctttggatggttgttttatctacctatttgattaagttcttgatgtatgaacaaataataatatcttatactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="51517" stop="50391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51217" g_stop="50690" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-U583599" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51217" e_stop="50690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTCTTGGGCATTTGGCAAAACTACTCATAATTTAATAATTTCTTGAAGTTGTATAAACATATGGATATGGTGATGAAGTTGGGAACATCAAGCGCGGTGGTGATATTCACAAAGAGTAGTTGTTGCATTTCTCATAGCATTGAAACCCTAATCCGTAGCTTTGGAGCAAACCCTACCGTTTACGAGCTTGATACACATCCAAATGGGAAGCAAATGGAGAAGGCATTGATGGAGCTAGGGTGTCAACCAAGTGTACCAACAATATTTATAGGGAAAGAGTTAGTTGGTGGTGCAAATGAGATAATGAGCCTTAATGTGAGGGGCAAACTTAAACAATTGCTCATTAGGGCTAATGCCATTTGGGTATAAAAAGTAATTATATAATAACAAGCGTATTTGGAGGTTTTTATATAATAAATATATACAACTTATACATAGAGTCTTTTAGCTTCTTTGGATGGTTGTTTTATCTACCTATTTGATTAAGTTCTTGATGTATGAACAAATAATAATATCTTATACTAT</genome_strand>
        <mrna_strand>TAAGTCTTGGGCATTTGGCAAAACTACTCATAATTTAATAATTTCTTGAAGTTGTATAAACATATGGATATGGTGATGAAGTTGGGAACATCAAGCGCGGTGGTGATATTCACAAAGAGTAGTTGTTGCATTTCTCATAGCATTGAAACCCTAATCCGTAGCTTTGGAGCAAACCCTACCGTTTACGAGCTTGATACACATCCAAATGGGAAGCAAATGGAGAAGGCATTGATGGAGCTAGGGTGTCAACCAAGTGTACCAACAATATTTATAGGGAAAGAGTTAGTTGGTGGTGCAAATGAGATAATGAGCCTTAATGTGAGGGGCAAACTTAAACAATTGCTCATTAGGGCTAATGCCATTTGGGTATAAAAAGTAATTATATAATAACAAGCGTATTTGGAGGTTTTTATATAATAAATATATACAACTTATACATAGAGTCTTTTAGCTTCTTTGGATGGTTGTTTTATCTACCTATTTGATTAAGTTCTTGATGTATGAACAAATAATAATATCTTATACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594589" ref_strand="+" ref_description="SGN-U594589 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147818473|emb|CAN74118.1| (e_value=3e-29) hypothetical; (*ATH) AT1G03020.1 (e_value=6e-30) | Symbol: None | glutaredoxin family protein, contains INTERPRO Domain IPR002109, Glutaredoxin (thioltransferase) | chr1:698207-698515 REVERSE | Aliases: F10O3.16, F10O3_16; (*SWP) sp|Q9SA68|GRXS1_ARATH (e_value=5e-29) Putative monothiol glutaredoxin-S1 OS=Arabidopsis thaliana GN=GRXS1; ">
      <seq>attcacttcacaacttctttcctctttagtctttactaaaagctatatacatatatatcttgacatttgagccaaactactaattaattatttcttgaagttgtttaaatatggatatggtgatgaagttgggagcaacaagtggggtggtgattttcaccaagagtagttgttgcatttctcacagcattgaaaccctaattcgtagttttggagcaaaccctataatttatgagctcgatacacatccaaatgggaagcaaatggaaaaggcattgatggagctagggtgtcaaccaagtgtgccagcaatatttatagggaaagagttggttggtggtgcaaatgagataatgagccttaatgtgaggggcaagcttaaacaattgctcattagggctaatgccatttggatataatgaaattaattaattaataaattgactagctatgtatatagcaattagtctaaatgttttgatggtaaatttaccaagtaatacagatactctttttgttttctctcacaatttgcttcttcatgtataaataaaaactactaatactttggtcatagcaagtcttttctttttgcaatctagtgatgatatgggtcaagttgaaacctccacaggaaccttcatgggtgacaacttatgttattctcatttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="+" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="73356" stop="74629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73656" g_stop="74329" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="+" ref_id="SGN-U594589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73656" e_stop="74329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACTTCACAACTTCTTTCCTCTTTAGTCTTTACTAAAAGCTATATACATATATATCTTGACATTTGAGCCAAACTACTAATTAATTATTTCTTGAAGTTGTTTAAATATGGATATGGTGATGAAGTTGGGAGCAACAAGTGGGGTGGTGATTTTCACCAAGAGTAGTTGTTGCATTTCTCACAGCATTGAAACCCTAATTCGTAGTTTTGGAGCAAACCCTATAATTTATGAGCTCGATACACATCCAAATGGGAAGCAAATGGAAAAGGCATTGATGGAGCTAGGGTGTCAACCAAGTGTGCCAGCAATATTTATAGGGAAAGAGTTGGTTGGTGGTGCAAATGAGATAATGAGCCTTAATGTGAGGGGCAAGCTTAAACAATTGCTCATTAGGGCTAATGCCATTTGGATATAATGAAATTAATTAATTAATAAATTGACTAGCTATGTATATAGCAATTAGTCTAAATGTTTTGATGGTAAATTTACCAAGTAATACAGATACTCTTTTTGTTTTCTCTCACAATTTGCTTCTTCATGTATAAATAAAAACTACTAATACTTTGGTCATAGCAAGTCTTTTCTTTTTGCAATCTAGTGATGATATGGGTCAAGTTGAAACCTCCACAGGAACCTTCATGGGTGACAACTTATGTTATTCTCATTTGAG</genome_strand>
        <mrna_strand>ATTCACTTCACAACTTCTTTCCTCTTTAGTCTTTACTAAAAGCTATATACATATATATCTTGACATTTGAGCCAAACTACTAATTAATTATTTCTTGAAGTTGTTTAAATATGGATATGGTGATGAAGTTGGGAGCAACAAGTGGGGTGGTGATTTTCACCAAGAGTAGTTGTTGCATTTCTCACAGCATTGAAACCCTAATTCGTAGTTTTGGAGCAAACCCTATAATTTATGAGCTCGATACACATCCAAATGGGAAGCAAATGGAAAAGGCATTGATGGAGCTAGGGTGTCAACCAAGTGTGCCAGCAATATTTATAGGGAAAGAGTTGGTTGGTGGTGCAAATGAGATAATGAGCCTTAATGTGAGGGGCAAGCTTAAACAATTGCTCATTAGGGCTAATGCCATTTGGATATAATGAAATTAATTAATTAATAAATTGACTAGCTATGTATATAGCAATTAGTCTAAATGTTTTGATGGTAAATTTACCAAGTAATACAGATACTCTTTTTGTTTTCTCTCACAATTTGCTTCTTCATGTATAAATAAAAACTACTAATACTTTGGTCATAGCAAGTCTTTTCTTTTTGCAATCTAGTGATGATATGGGTCAAGTTGAAACCTCCACAGGAACCTTCATGGGTGACAACTTATGTTATTCTCATTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597671" ref_strand="+" ref_description="SGN-U597671 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15238885|ref|NP_197361.1| (e_value=1e-27) glutaredoxin protein family [Arabidopsis thaliana]; (*ATH) AT5G18600.1 (e_value=8e-30) | Symbol: None | glutaredoxin family protein, contains glutaredoxin domain, INTERPRO:IPR002109 | chr5:6183265-6183956 REVERSE | Aliases: T28N17.80, T28N17_80; (*SWP) sp|Q8L8Z8|GRXS2_ARATH (e_value=7e-29) Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2; ">
      <seq>aaagccttttctcttctagtttccttcacatatttttcttccaataaaagtatatctttcacaaaagacttaaaaacattatggaaatggtgatgaagatgggagcacaaagtccagtggtgattttcagtagaagcacttgttgcatttctcataccatcgaaaccctaattcgcaattttggagcaaaccctattgtttatgagcttgatagacttcaaaatgggaaggaattagagagggcattggttgatttagggtgtcaacaaattgtgcctgttgtgttcattggaaatgagttagttggaggttctaatgaaattatgagtctcaatattagagacaagctcaagcaattgctcataaaggctaatgcaatttgggtataaaaaatatatgcttgtaactttttttaaaaaataaccatgggtcagggcaacttatgcacatctcgactatagattcatgagtacttgtgctgcctacatcaacataggtaccggataactctgtccactaagacttggaccgatgaaaagaaatcacctcatatttggcttgagagagatttacaagattgaaatttgataagctaaattaatttctaggtcatgatgtcatttttgggcagtgaaagacctagatatatgaggttttcttttattcacctttttatctccattttttgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="80014" stop="78723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79714" g_stop="79023" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-U597671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79714" e_stop="79023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCTTTTCTCTTCTAGTTTCCTTCACATATTTTTCTTCCAATAAAAGTATATCTTTCACAAAAGACTTAAAAACATTATGGAAATGGTGATGAAGATGGGAGCACAAAGTCCAGTGGTGATTTTCAGTAGAAGCACTTGTTGCATTTCTCATACCATCGAAACCCTAATTCGCAATTTTGGAGCAAACCCTATTGTTTATGAGCTTGATAGACTTCAAAATGGGAAGGAATTAGAGAGGGCATTGGTTGATTTAGGGTGTCAACAAATTGTGCCTGTTGTGTTCATTGGAAATGAGTTAGTTGGAGGTTCTAATGAAATTATGAGTCTCAATATTAGAGACAAGCTCAAGCAATTGCTCATAAAGGCTAATGCAATTTGGGTATAAAAAATATATGCTTGTAACTTTTTTTAAAAAATAACCATGGGTCAGGGCAACTTATGCACATCTCGACTATAGATTCATGAGTACTTGTGCTGCCTACATCAACATAGGTACCGGATAACTCTGTCCACTAAGACTTGGACCGATGAAAAGAAATCACCTCATATTTGGCTTGAGAGAGATTTACAAGATTGAAATTTGATAAGCTAAATTAATTTCTAGGTCATGATGTCATTTTTGGGCAGTGAAAGACCTAGATATATGAGGTTTTCTTTTATTCACCTTTTTATCTCCATTTTTTGTTGT</genome_strand>
        <mrna_strand>AAAGCCTTTTCTCTTCTAGTTTCCTTCACATATTTTTCTTCCAATAAAAGTATATCTTTCACAAAAGACTTAAAAACATTATGGAAATGGTGATGAAGATGGGAGCACAAAGTCCAGTGGTGATTTTCAGTAGAAGCACTTGTTGCATTTCTCATACCATCGAAACCCTAATTCGCAATTTTGGAGCAAACCCTATTGTTTATGAGCTTGATAGACTTCAAAATGGGAAGGAATTAGAGAGGGCATTGGTTGATTTAGGGTGTCAACAAATTGTGCCTGTTGTGTTCATTGGAAATGAGTTAGTTGGAGGTTCTAATGAAATTATGAGTCTCAATATTAGAGACAAGCTCAAGCAATTGCTCATAAAGGCTAATGCAATTTGGGTATAAAAAATATATGCTTGTAACTTTTTTTAAAAAATAACCATGGGTCAGGGCAACTTATGCACATCTCGACTATAGATTCATGAGTACTTGTGCTGCCTACATCAACATAGGTACCGGATAACTCTGTCCACTAAGACTTGGACCGATGAAAAGAAATCACCTCATATTTGGCTTGAGAGAGATTTACAAGATTGAAATTTGATAAGCTAAATTAATTTCTAGGTCATGATGTCATTTTTGGGCAGTGAAAGACCTAGATATATGAGGTTTTCTTTTATTCACCTTTTTATCTCCATTTTTTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582621" ref_strand="+" ref_description="SGN-U582621 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157345039|emb|CAO71767.1| (e_value=2e-113) unnamed; (*ATH) AT2G21960.1 (e_value=9e-109) | Symbol: None | expressed protein | chr2:9361999-9364499 FORWARD | Aliases: F7D8.28, F7D8_28; ">
      <seq>agcttttagttatcccacaaaattcccccaatttttttatttttaagaaaagaaaaatggcaaattctacatcatctctcttcactgcgccttctcaatttttagtacaatgtaataatccattaattatttctggaaaattgagcttcaaaattcgagcttcagcagcttcttcttcttctccttcatcaactggtgttgtcgatctatccactctccgaaccgccatttctaagaaagatagtaatgccgtaaaagaggcgcttgatcagctagttgaaatcggttggtccaaaaaatggggttctcaaccatatgtgtcacgtcgaacgacatctcttagagagctgacaactctcggaataaagaacgcagagaaccttgcaatcccaagtgtcagaaatgatgcagcttttctgtttacagtggtaggcacaactgggtttttgggagttcttgcagggcaacttcctggtgattggggtttcttcgttccatacttgattgggagcatatctttagtagttttgggaatcggaagtacttccccagcgctccttcaggccgccattgatggattttcatccttttttcctgattaccaggagagaatcgccagacatgaagcagctcatttcttagtttcctacctaataggtgttccgatccttggatattcactggatattgggaaagagcatgtcaatttaattgatgaaaggttggaaaaacttatctacagtggccagcttgactcaaaagaactcgacagattggcagtggtagcgatggccgggctagcagcagaagggctaaagtatgataaagttgtcggtcaatcagctgaccttttcactcttcagagatttctaaacaggagcaagccgtcgcttagcaaagaccagcagcagaaccttacaagatgggcggtgagtctaaaaccgaacacatactgtgataaatatacacaaactattgaaatatataacataattaagtcaattaaaagtgtcttagtctctagtagtttaagcttttatatgaaatcatcacacacttcaacatggtatcagagcacatcacaagaggtggtgagacataatataactacataattaaaagtaaaagtatgtgatgagatgatcacatatttctaacatacaaacatatacaaaattcaagatgcataccacacgtagattgtttgcttttgccacttctaagctaaacgaagacattgattataatgttgcaagtaaatccaagcaagaccattagtttgtctgattcaatttttgcaggtcttatttgctgcttcactactgaaaaataatagcaagcttcatgaagccctaatagcggcaatgacaaacaaggcatcggtcgtagactgcatagaagcaattgagaaagcagcttgatcttactccagaaatgtgactaaacacttgtacatgaaaaacatgtgattttttctcataaatttgaaaatatatcgaagaacagaaagaagtatatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="89041" stop="83900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88741" g_stop="88506" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88505" i_stop="87966" i_length="540">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87965" g_stop="87870" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="332" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87869" i_stop="87752" i_length="118">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87751" g_stop="87677" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="407" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87676" i_stop="87276" i_length="401">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87275" g_stop="87207" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="476" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86254" g_stop="86178" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="553" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86177" i_stop="86061" i_length="117">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86060" g_stop="85972" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="642" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85741" g_stop="85612" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="772" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="85033" g_stop="84943" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="863" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.522" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="84858" g_stop="84200" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="864" r_stop="1522" r_length="659" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-U582621" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88741" e_stop="88506"/>
          <exon e_start="87965" e_stop="87870"/>
          <exon e_start="87751" e_stop="87677"/>
          <exon e_start="87275" e_stop="87207"/>
          <exon e_start="86254" e_stop="86178"/>
          <exon e_start="86060" e_stop="85972"/>
          <exon e_start="85741" e_stop="85612"/>
          <exon e_start="85033" e_stop="84943"/>
          <exon e_start="84858" e_stop="84200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTTAGTTATCCCACAAAATTCCCCCAATTTTTTTATTTTTAAGAAAAGAAAAATGTCAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAGGTACATTCCCTGTTTTTAATCGAAAATTTTAATCTTCTCTCCATTTTGTGCGTATTATAATTGTTGTCATTTTTGAGGTTTGTGTCGGTAATTTTTTTTTGGATGGAAAGAAAATTTGCCGCCGCTATCTTTTGGGACACATAGGAGTGAAAACCCTGCTAAATAATTAAGACATAATACATGAACATGAGACACAAGTAGGGTGTGCATAAGTAATGTTTAAACTCGTGTAAAATTGAACAAATAGATACATAACAATTTTGTGTCCTACGTGGTGATCTATGTGTGTACTACCACATAAGACAAGTGTGTCTACTTATTTAATTTTGTATAAGTTTAAGTGTCTGCTAGTGTATTCTCTGATTTGGAGCACATAGTTGTTGGTTGAAACCAAGTTAAGGATCATGTTTATGTATTATATCAATAATTAATGATGCTCCAATTTAGATATGGAACTCGCAAATAAGTGATGTTTGCAGTGTCTTTTTTTTTTTGGCAATTACTCCTAACTGTTTTATGTGCATATTTTCTTGATTGTAGAAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACGGTCAGTTTTCATTTAAAATGTGAAAAGACCAATGTGTATCTATCTGTTATCTAATTTATTTGATTAGCACACATTGTGACAATAATTCTCTTAATGGTCTTAAAATTTTCTGTTGCAGACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGATGTAAGTTTCTTGATGAAATTTGTATTGTTATTACGTTGATGACAGTAGCTCTCGATTCGGATATTGTTCTGTATTCTGATTGAAGAGAACTGTATGTTCACATGGGTGCGATAACTAAGGGGAATATTTGAGCTAACGTCGTGTTTATGGCACATGTATTGTTCATCTGTTTCATACACTGGAACATTGGTATCTCTACGATCATGAAATGAATATCTGACTACACATTTATTACATTTCTTTCGTGTCCCTACAAATGATTTCATGGTTCCAATTGTTGTTACTTGGAACATCAAAAGTTGTTTGACAACGGATGATTAATGTGGTTATGTCTTTTTCATTTGACTGTTATGGACTTCGTTATTAAATCTGTTTGATACTGATTTCCTTCAGTGATGCAGGCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGTGTATGTTCTCTTACTATCCTACTTTTCTGCTGTTCATTGTCCTATTTGTTTAACTCTGAAGTTTCATATTACATCTAAACTGTGGTTTATAAGCCTCATTCTCCCTGTTAAGTTTGCAAATAACGCACTGGATATGGGGCCTGAGTCTTTCATTTGGTTCTATTGTTATAGTCAATCTAGATAACTATATCTAGTTTGGTTTCGTGGGATTACAATCTCTTGATTTATTATCTGGATGTAAACCAAGTTGACAATCCTAAGAGGTGTTGGGGTGGTATTGTAGTTCAACACCCCACGTCTTTCTAACTACTGACCACTTGTTTAATAGTGTGAATAACCCTATGTTGCTCAGACTCTTCAAAAATGCCAAAGGATGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGTGCGGCATCAAAAGTGGAGAGTCCGCGCAACTAAGGAATCACCTCATCGAAAAGGTTAATTTGTTAAATAGACAAAAGTTTTTGTTTGTTCTTTACAAATTAAGATGTCTCACACCCAAGGGTGTGACTAAGTGGTCAATGAAGTGAGTTGCACGGAGGCAAAAAGCACTAGGTGGTTCTTTCCATTTTGTCACCAAGCCTTGGTGGGTAGAATACCCTCTATGCTTGTAGCAGGAACTCCATGAAATTAGTCGAGAAGAGTAATAACATGTTCCCATATGTCTGCACCAGAACATTTTTATTCGGAACCTATATAAAGATATCACCGATGTATTTTGTGTCGACATAGAAGTACTAGTGCGGGTTATTCGCGAAAGTGTAACAATGCACACAATTCTCAGATAATTTTGTTCGCCTTGGTGTTACTCCAAAACCAAGATGGGTTGTGAAGTACAGTGATGTTACTGTGTATCTGTATAGAACATATACATGCAGGTCACATTGTTGATTCTTTCTTTATGTTTTCAGGATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAGGTTTAGTGTACACTATCTTGGAGTTAAATTGCCCTTTTTCTGGAGCCATTAATAAAAAGAAACTGTTGCCCTTTGTCTTCACAGAGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCGGTGAGTCTAAAACCGAACACATACTGTGATAAATATACACAAACTATTGAAATATATAACATAATTAAGTCAATTAAAAGTGTCTTAGTCTCTAGTAGTTTAAGCTTTTATATGAAATCATCACACACTTCAACATGGTATCAGAGCACATCACAAGAGGTGGTGAGACATAATATAACTACATAATTAAAAGTAAAAGTATGTGATGAGATGATCACATATTTCTAACATACAAACATATACAAAATTCAAGATGCATACCACACGTAGATTGTTTGCTTTTGCCACTTCTAAGCTAAACGAAGACATTGATTATAATGTTGCAAGTAAATCCAAGCAAGACCATTAGTTTGTCTGATTCAATTTTTGCAGGTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATCGGTCGTAGACTGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAGAAATGTGACTAAACACTTGTACATGAAAAACATGTGATTTTTTCTCATAAATTTGAAAATATATCGAAGAACAGAAAGAAGTATATATAT</genome_strand>
        <mrna_strand>AGCTTTTAGTTATCCCACAAAATTCCCCCAATTTTTTTATTTTTAAGAAAAGAAAAATGGCAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACG......................................................................................................................ACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGC.....................................................................................................................GCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG......................................................................................................................................................................................................................................TTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAG....................................................................................AGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCGGTGAGTCTAAAACCGAACACATACTGTGATAAATATACACAAACTATTGAAATATATAACATAATTAAGTCAATTAAAAGTGTCTTAGTCTCTAGTAGTTTAAGCTTTTATATGAAATCATCACACACTTCAACATGGTATCAGAGCACATCACAAGAGGTGGTGAGACATAATATAACTACATAATTAAAAGTAAAAGTATGTGATGAGATGATCACATATTTCTAACATACAAACATATACAAAATTCAAGATGCATACCACACGTAGATTGTTTGCTTTTGCCACTTCTAAGCTAAACGAAGACATTGATTATAATGTTGCAAGTAAATCCAAGCAAGACCATTAGTTTGTCTGATTCAATTTTTGCAGGTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATCGGTCGTAGACTGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAGAAATGTGACTAAACACTTGTACATGAAAAACATGTGATTTTTTCTCATAAATTTGAAAATATATCGAAGAACAGAAAGAAGTATATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582622" ref_strand="+" ref_description="SGN-U582622 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157345039|emb|CAO71767.1| (e_value=2e-115) unnamed; (*ATH) AT2G21960.1 (e_value=8e-112) | Symbol: None | expressed protein | chr2:9361999-9364499 FORWARD | Aliases: F7D8.28, F7D8_28; ">
      <seq>ccgttaaattctacatcatctctcttcactgcgccttctcaatttttagtacaatgtaataatccattaattatttctggaaaattgagcttcaaaattcgagcttcagcagcttcttcttcttctccttcatcaactggtgttgtcgatctatccactctccgaaccgccatttctaagacatctcttagagagctgacaactctcggaataaagaacgcagagaaccttgcaatcccaagtgtcagaaatgatgcagcttttctgtttacagtggtaggcacaactgggtttttgggagttcttgcagggcaacttcctggtgattggggtttcttcgttccatacttgattgggagcatatctttagtagttttgggaatcggaagtacttccccagcgctccttcaggccgccattgatggattttcatccttttttcctgattaccaggagagaatcgccagacatgaagcagctcatttcttagtttcctacctaataggtgttccgatccttggatattcactggatattgggaaagagcatgtcaatttaattgatgaaaggttggaaaaacttatctacagtggccagcttgactcaaaagaactcgacagattggcagtggtagcgatggccgggctagcagcagaagggctaaagtatgataaagttgtcggtcaatcagctgaccttttcactcttcagagatttctaaacaggagcaagccgtcgcttagcaaagaccagcagcagaaccttacaagatgggcggtcttatttgctgcttcactactgaaaaataatagcaagcttcatgaagccctaatagcggcaatgacaaacaaggcatcggtcgtagactgcatagaagcaattgagaaagcagcttgatcttactccagaaatgtgactaaacacttgtacatgaaaaacatgtgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="88983" stop="83949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88685" g_stop="88506" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88505" i_stop="87752" i_length="754">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87751" g_stop="87677" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="255" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87676" i_stop="87276" i_length="401">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87275" g_stop="87207" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="324" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86254" g_stop="86178" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="401" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86177" i_stop="86061" i_length="117">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86060" g_stop="85972" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="490" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85741" g_stop="85612" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="620" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85033" g_stop="84943" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="711" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.522" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="84858" g_stop="84793" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="777" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="84792" i_stop="84421" i_length="372">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="84420" g_stop="84249" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="949" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-U582622" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>949</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88685" e_stop="88506"/>
          <exon e_start="87751" e_stop="87677"/>
          <exon e_start="87275" e_stop="87207"/>
          <exon e_start="86254" e_stop="86178"/>
          <exon e_start="86060" e_stop="85972"/>
          <exon e_start="85741" e_stop="85612"/>
          <exon e_start="85033" e_stop="84943"/>
          <exon e_start="84858" e_stop="84793"/>
          <exon e_start="84420" e_stop="84249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAGGTACATTCCCTGTTTTTAATCGAAAATTTTAATCTTCTCTCCATTTTGTGCGTATTATAATTGTTGTCATTTTTGAGGTTTGTGTCGGTAATTTTTTTTTGGATGGAAAGAAAATTTGCCGCCGCTATCTTTTGGGACACATAGGAGTGAAAACCCTGCTAAATAATTAAGACATAATACATGAACATGAGACACAAGTAGGGTGTGCATAAGTAATGTTTAAACTCGTGTAAAATTGAACAAATAGATACATAACAATTTTGTGTCCTACGTGGTGATCTATGTGTGTACTACCACATAAGACAAGTGTGTCTACTTATTTAATTTTGTATAAGTTTAAGTGTCTGCTAGTGTATTCTCTGATTTGGAGCACATAGTTGTTGGTTGAAACCAAGTTAAGGATCATGTTTATGTATTATATCAATAATTAATGATGCTCCAATTTAGATATGGAACTCGCAAATAAGTGATGTTTGCAGTGTCTTTTTTTTTTTGGCAATTACTCCTAACTGTTTTATGTGCATATTTTCTTGATTGTAGAAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACGGTCAGTTTTCATTTAAAATGTGAAAAGACCAATGTGTATCTATCTGTTATCTAATTTATTTGATTAGCACACATTGTGACAATAATTCTCTTAATGGTCTTAAAATTTTCTGTTGCAGACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGATGTAAGTTTCTTGATGAAATTTGTATTGTTATTACGTTGATGACAGTAGCTCTCGATTCGGATATTGTTCTGTATTCTGATTGAAGAGAACTGTATGTTCACATGGGTGCGATAACTAAGGGGAATATTTGAGCTAACGTCGTGTTTATGGCACATGTATTGTTCATCTGTTTCATACACTGGAACATTGGTATCTCTACGATCATGAAATGAATATCTGACTACACATTTATTACATTTCTTTCGTGTCCCTACAAATGATTTCATGGTTCCAATTGTTGTTACTTGGAACATCAAAAGTTGTTTGACAACGGATGATTAATGTGGTTATGTCTTTTTCATTTGACTGTTATGGACTTCGTTATTAAATCTGTTTGATACTGATTTCCTTCAGTGATGCAGGCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGTGTATGTTCTCTTACTATCCTACTTTTCTGCTGTTCATTGTCCTATTTGTTTAACTCTGAAGTTTCATATTACATCTAAACTGTGGTTTATAAGCCTCATTCTCCCTGTTAAGTTTGCAAATAACGCACTGGATATGGGGCCTGAGTCTTTCATTTGGTTCTATTGTTATAGTCAATCTAGATAACTATATCTAGTTTGGTTTCGTGGGATTACAATCTCTTGATTTATTATCTGGATGTAAACCAAGTTGACAATCCTAAGAGGTGTTGGGGTGGTATTGTAGTTCAACACCCCACGTCTTTCTAACTACTGACCACTTGTTTAATAGTGTGAATAACCCTATGTTGCTCAGACTCTTCAAAAATGCCAAAGGATGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGTGCGGCATCAAAAGTGGAGAGTCCGCGCAACTAAGGAATCACCTCATCGAAAAGGTTAATTTGTTAAATAGACAAAAGTTTTTGTTTGTTCTTTACAAATTAAGATGTCTCACACCCAAGGGTGTGACTAAGTGGTCAATGAAGTGAGTTGCACGGAGGCAAAAAGCACTAGGTGGTTCTTTCCATTTTGTCACCAAGCCTTGGTGGGTAGAATACCCTCTATGCTTGTAGCAGGAACTCCATGAAATTAGTCGAGAAGAGTAATAACATGTTCCCATATGTCTGCACCAGAACATTTTTATTCGGAACCTATATAAAGATATCACCGATGTATTTTGTGTCGACATAGAAGTACTAGTGCGGGTTATTCGCGAAAGTGTAACAATGCACACAATTCTCAGATAATTTTGTTCGCCTTGGTGTTACTCCAAAACCAAGATGGGTTGTGAAGTACAGTGATGTTACTGTGTATCTGTATAGAACATATACATGCAGGTCACATTGTTGATTCTTTCTTTATGTTTTCAGGATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAGGTTTAGTGTACACTATCTTGGAGTTAAATTGCCCTTTTTCTGGAGCCATTAATAAAAAGAAACTGTTGCCCTTTGTCTTCACAGAGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCGGTGAGTCTAAAACCGAACACATACTGTGATAAATATACACAAACTATTGAAATATATAACATAATTAAGTCAATTAAAAGTGTCTTAGTCTCTAGTAGTTTAAGCTTTTATATGAAATCATCACACACTTCAACATGGTATCAGAGCACATCACAAGAGGTGGTGAGACATAATATAACTACATAATTAAAAGTAAAAGTATGTGATGAGATGATCACATATTTCTAACATACAAACATATACAAAATTCAAGATGCATACCACACGTAGATTGTTTGCTTTTGCCACTTCTAAGCTAAACGAAGACATTGATTATAATGTTGCAAGTAAATCCAAGCAAGACCATTAGTTTGTCTGATTCAATTTTTGCAGGTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATCGGTCGTAGACTGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAGAAATGTGACTAAACACTTGTACATGAAAAACATGTGATTTT</genome_strand>
        <mrna_strand>CCGTTAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT.................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGC.....................................................................................................................GCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG......................................................................................................................................................................................................................................TTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAG....................................................................................AGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCG....................................................................................................................................................................................................................................................................................................................................................................................GTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATCGGTCGTAGACTGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAGAAATGTGACTAAACACTTGTACATGAAAAACATGTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589241" ref_strand="+" ref_description="SGN-U589241 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345039|emb|CAO71767.1| (e_value=3e-81) unnamed; (*ATH) AT2G21960.1 (e_value=3e-78) | Symbol: None | expressed protein | chr2:9361999-9364499 FORWARD | Aliases: F7D8.28, F7D8_28; ">
      <seq>tttctgtttacagtggtaggcacaactgggtttttgggagttcttgcagggcaacttcctggtgattggggtttcttcgttccatacttgattgggagcatatctttagtagttttgggaatcggaagtacttccccagcgtcgttatggctcattcttttattcattatgtaggctccttcaggccgccattgatggattttcatccttttttcctgattaccaggagagaatcgccagacatgaagcagctcatttcttagtttcctacctaataggtgttccgatccttggatattcactggatattgggaaagagcatgtcaatttaattgatgaaaggttggaaaaacttatctacagtggccagcttgactcaaaagaactcgacagattggcagtggtagcgatggccgggctagcagcagaagggctaaagtatgataaagttgtcggtcaatcagctgaccttttcactcttcagagatttctaaacaggagcaagccgtcgcttagcaaagaccagcagcagaaccttacaagatggggcggtcttatttgctgcttcactactgaaaaataatagcaagcttcatgaagccctaatagcggcaatgacaaacaaggcatncggtcgtagactgcatagaagcaattgagaaagcagcttgatcttactccaaaaatgtgactaaacacttgtacatgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="87569" stop="83960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87269" g_stop="87207" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86254" g_stop="86178" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="140" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86177" i_stop="86095" i_length="83">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86094" g_stop="85972" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="263" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85741" g_stop="85612" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="393" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85033" g_stop="84943" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="484" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.522" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84858" g_stop="84793" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="551" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="84792" i_stop="84421" i_length="372">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="84420" g_stop="84260" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="713" r_length="162" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-U589241" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87269" e_stop="87207"/>
          <exon e_start="86254" e_stop="86178"/>
          <exon e_start="86094" e_stop="85972"/>
          <exon e_start="85741" e_stop="85612"/>
          <exon e_start="85033" e_stop="84943"/>
          <exon e_start="84858" e_stop="84793"/>
          <exon e_start="84420" e_stop="84260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGTGTATGTTCTCTTACTATCCTACTTTTCTGCTGTTCATTGTCCTATTTGTTTAACTCTGAAGTTTCATATTACATCTAAACTGTGGTTTATAAGCCTCATTCTCCCTGTTAAGTTTGCAAATAACGCACTGGATATGGGGCCTGAGTCTTTCATTTGGTTCTATTGTTATAGTCAATCTAGATAACTATATCTAGTTTGGTTTCGTGGGATTACAATCTCTTGATTTATTATCTGGATGTAAACCAAGTTGACAATCCTAAGAGGTGTTGGGGTGGTATTGTAGTTCAACACCCCACGTCTTTCTAACTACTGACCACTTGTTTAATAGTGTGAATAACCCTATGTTGCTCAGACTCTTCAAAAATGCCAAAGGATGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGTGCGGCATCAAAAGTGGAGAGTCCGCGCAACTAAGGAATCACCTCATCGAAAAGGTTAATTTGTTAAATAGACAAAAGTTTTTGTTTGTTCTTTACAAATTAAGATGTCTCACACCCAAGGGTGTGACTAAGTGGTCAATGAAGTGAGTTGCACGGAGGCAAAAAGCACTAGGTGGTTCTTTCCATTTTGTCACCAAGCCTTGGTGGGTAGAATACCCTCTATGCTTGTAGCAGGAACTCCATGAAATTAGTCGAGAAGAGTAATAACATGTTCCCATATGTCTGCACCAGAACATTTTTATTCGGAACCTATATAAAGATATCACCGATGTATTTTGTGTCGACATAGAAGTACTAGTGCGGGTTATTCGCGAAAGTGTAACAATGCACACAATTCTCAGATAATTTTGTTCGCCTTGGTGTTACTCCAAAACCAAGATGGGTTGTGAAGTACAGTGATGTTACTGTGTATCTGTATAGAACATATACATGCAGGTCACATTGTTGATTCTTTCTTTATGTTTTCAGGATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAGGTTTAGTGTACACTATCTTGGAGTTAAATTGCCCTTTTTCTGGAGCCATTAATAAAAAGAAACTGTTGCCCTTTGTCTTCACAGAGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGAT-GGGCGGTGAGTCTAAAACCGAACACATACTGTGATAAATATACACAAACTATTGAAATATATAACATAATTAAGTCAATTAAAAGTGTCTTAGTCTCTAGTAGTTTAAGCTTTTATATGAAATCATCACACACTTCAACATGGTATCAGAGCACATCACAAGAGGTGGTGAGACATAATATAACTACATAATTAAAAGTAAAAGTATGTGATGAGATGATCACATATTTCTAACATACAAACATATACAAAATTCAAGATGCATACCACACGTAGATTGTTTGCTTTTGCCACTTCTAAGCTAAACGAAGACATTGATTATAATGTTGCAAGTAAATCCAAGCAAGACCATTAGTTTGTCTGATTCAATTTTTGCAGGTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCAT-CGGTCGTAGACTGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAGAAATGTGACTAAACACTTGTACATGAAAAA</genome_strand>
        <mrna_strand>TTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGC...................................................................................GTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG......................................................................................................................................................................................................................................TTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAG....................................................................................AGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGGCG....................................................................................................................................................................................................................................................................................................................................................................................GTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATNCGGTCGTAGACTGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAAAAATGTGACTAAACACTTGTACATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589240" ref_strand="+" ref_description="SGN-U589240 Tomato 200607#2 [1 ESTs aligned] (*ATH) AT2G21960.1 (e_value=3e-11) | Symbol: None | expressed protein | chr2:9361999-9364499 FORWARD | Aliases: F7D8.28, F7D8_28; ">
      <seq>cggcaccgtttgactttgcacaaagtttaagtaaaacgggaagacttttgaatcttgtcgtctataccaaaccttaggtatttgtgtggttgtaaattatttcattaagcgtaaaaaagtttttaatgttaggttgtttttagttattaaaaaaatgacattctttttgggacagactaagactaaaaaagaatggtgtcacataaattgtgacacaggagtacttgctttgaaaggctagaatgtaatgctttagctacgggtctggtccttcagaaccctataaaatgtcactaataagtacaaataactgattttgaagccagtaaatcaaataatttgtggtagaatttctaccacgaaccataatgttcaaatcctgtatctacctctgctagttatatgtaggtactttgtcagacatctgctgctatttatattttcacatgaagtatcattgcttctaaaattttcaccggaaacaaaaattatttactgagtagttacatttctcagattggcagtggtagcgatggccgggctagcagcagaagggctaaagtatgataaagttgtcggtcaatcagctgaccttttcactcttcagagatttctaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="85849" stop="84639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85549" g_stop="84943" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.522" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84858" g_stop="84846" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="620" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-U589240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85549" e_stop="84943"/>
          <exon e_start="84858" e_stop="84846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAGGTTTAGTGTACACTATCTTGGAGTTAAATTGCCCTTTTTCTGGAGCCATTAATAAAAAGAAACTGTTGCCCTTTGTCTTCACAGAGATTTCTAAACA</genome_strand>
        <mrna_strand>CGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAG....................................................................................AGATTTCTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582623" ref_strand="+" ref_description="SGN-U582623 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157345039|emb|CAO71767.1| (e_value=3e-25) unnamed; (*ATH) AT2G21960.1 (e_value=2e-25) | Symbol: None | expressed protein | chr2:9361999-9364499 FORWARD | Aliases: F7D8.28, F7D8_28; ">
      <seq>tctgtttacagtggtaggcacaactgggtttttgggagttcttgcagggcaacttcctggtgattggggtttcttcgttccatacttgattgggagcatatctttagtagttttgggaatcggaagtacttccccagcgtaagtaaagattttaggtgttcttctgatactaataatgcattatactatctattcagttgagctttttctactgcatgcaggtcgttatggctcattcttttattcattatgtaggctccttcaggccgccattgatggattttcatccttttttcctgattaccaggagagaatcgccagacatgaagcagctcatttcttaggtggcatcctgttttagttttcaatattttatacttttatttttatttggctatgataatgacatgagttgagcttaaatgaaacattgaagattcatataagacgaacctcgacaagttattgttgttatttggttatgataatgacatcgaggcatagatgttattgttgatgtgcttctgcggttccattaactttcctctattaagccgtacaatgtcaatttcagtttcctacctaataggtgttcccgatccttggatattcactggatattgggaaagagcatgtcaatttaattgatgaaaggttggaaaaacttatctacagtggccagcttgactcaaaagaactcgacaggtatcgacttcaaaagaatctcttcttcaatcaattaattactccttctgtctcagtttatgcggcaccgtttgactttgcacaaagtttaagtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="87567" stop="85215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87267" g_stop="87207" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86254" g_stop="85515" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="802" r_length="741" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-U582623" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87267" e_stop="87207"/>
          <exon e_start="86254" e_stop="85515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGTGTATGTTCTCTTACTATCCTACTTTTCTGCTGTTCATTGTCCTATTTGTTTAACTCTGAAGTTTCATATTACATCTAAACTGTGGTTTATAAGCCTCATTCTCCCTGTTAAGTTTGCAAATAACGCACTGGATATGGGGCCTGAGTCTTTCATTTGGTTCTATTGTTATAGTCAATCTAGATAACTATATCTAGTTTGGTTTCGTGGGATTACAATCTCTTGATTTATTATCTGGATGTAAACCAAGTTGACAATCCTAAGAGGTGTTGGGGTGGTATTGTAGTTCAACACCCCACGTCTTTCTAACTACTGACCACTTGTTTAATAGTGTGAATAACCCTATGTTGCTCAGACTCTTCAAAAATGCCAAAGGATGCGTGTCGGATTCGCCAAAAGTAGTGTATTTTTGGAGAATCCGAGACGGTGCGGCATCAAAAGTGGAGAGTCCGCGCAACTAAGGAATCACCTCATCGAAAAGGTTAATTTGTTAAATAGACAAAAGTTTTTGTTTGTTCTTTACAAATTAAGATGTCTCACACCCAAGGGTGTGACTAAGTGGTCAATGAAGTGAGTTGCACGGAGGCAAAAAGCACTAGGTGGTTCTTTCCATTTTGTCACCAAGCCTTGGTGGGTAGAATACCCTCTATGCTTGTAGCAGGAACTCCATGAAATTAGTCGAGAAGAGTAATAACATGTTCCCATATGTCTGCACCAGAACATTTTTATTCGGAACCTATATAAAGATATCACCGATGTATTTTGTGTCGACATAGAAGTACTAGTGCGGGTTATTCGCGAAAGTGTAACAATGCACACAATTCTCAGATAATTTTGTTCGCCTTGGTGTTACTCCAAAACCAAGATGGGTTGTGAAGTACAGTGATGTTACTGTGTATCTGTATAGAACATATACATGCAGGTCACATTGTTGATTCTTTCTTTATGTTTTCAGGATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTT-CCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAA</genome_strand>
        <mrna_strand>TCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGATGTTATTGTTGATGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565399" ref_strand="+" ref_description="SGN-U565399 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|118483863|gb|ABK93822.1| (e_value=5e-27) unknown; (*ATH) AT5G64850.1 (e_value=2e-25) | Symbol: None | expressed protein | chr5:25938670-25940580 FORWARD | Aliases: MXK3.7, MXK3_7; ">
      <seq>gaaatagtttctttatatttattttccttgttcatactcttacaatggaatatcacaaagagaagaagaatggaccatggctatctgtgccacaatttggacattgggatcaaaagggtgtctaccctgactactcaatggatttttctaaaataagagaaaataggaaacaaaacaaaaaggacttatcaagagccagttttggaaatgagaatgacctcattttctctaccaaaagtgatgcaaatgagaatgatcatcattaccatcaaaaccaatctacaactaggatgagaaggatctttagatatttcaattgctgtggaaaagcttgaagttcatggaattgatttttcatccaatttccttgtaatgaaaatatagtaatttgtgatttctacctaagttttgagtgacttttataagaaataggaaaatgttataaattttggaaattgtggtgattgtttcttaacatcctttgcttctcttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="93278" stop="90586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92979" g_stop="92918" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92917" i_stop="92094" i_length="824">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92093" g_stop="91869" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="287" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91868" i_stop="91095" i_length="774">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91094" g_stop="90886" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="496" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-U565399" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92979" e_stop="92918"/>
          <exon e_start="92093" e_stop="91869"/>
          <exon e_start="91094" e_stop="90886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAGTTTCTTTATATTTATTTTCCTTGTTCATACTCTTACAATGGAATATCACAAAGAGGTAATTAAGAGGCTATCTTTGTTAATTAATCCACATATTGTTGGCTGCCTTCTTGTTAATTTTGTTGCTAATTTTTTGATAATCACATGATTTCCTTGTTTATTCCTTCTTCAAAAATAAGATAAACATTAGGTTTCCATCTTTATTTTCTTGTTCTTAATCTTTCTTGTTTTCCTAGTATATATGTTTTTATTTGCGACTTATAACTTCTCTGTCTTGTCAAACTTCTAAAATTTATTTATTTTAATTGGCCATTTTTTAAAAGTACTTTTAATAAGTATTATTTTATGTTATCATTTGACTAATATTAGAATAACAAATTGTGTTTGATAGCTTTTGCTACTTTTTAAAAGTATTTTTTTCTTCTAAGAACTTTGACAAACACATCAATTCTATAAAATATACTGTATATATTTTTTATTTTTTATTTTTACAAATTTTAACTTCTCAGAAATTTGGCCAAATAAACTATTAGTCTAGCTACTAGCACTATTAAAAAACACCGGAATTAGCTATGAATTTTGTCATTAGTCCGTCGCTATTTTACTCATAGCTAACGAAATCTTTCGTTAGTCATTGTTCAATAGGATTAGCGATGGATTGCGTTGTTTATATATAGTTACAAAATTTATCCGTCGCTAAATTCATTTTTTTTAAAGTAGTGTAGGAAATTTATTGGTGGTTCAACTTTTTAAAGAAGTTATTCATTTTTTAATTGATATTGGTTGTAGATTAATCAATTTATAACATATTTGATATTTCTAAAAATATAAAAAATGTTACATATTAATTTATTGATGGTAAGCTTCTCTCTTTTTGTGCAGAAGAAGAATGGACCATGGCTATCTGTGCCACAATTTGGACATTGGGATCAAAAGGGTGTCTACCCTGACTACTCAATGGATTTTTCTAAAATAAGAGAAAATAGGAAACAAAACAAAAAGGACTTATCAAGAGCCAGTTTTGGAAATGAGAATGACCTCATTTTCTCTACCAAAAGTGATGCAAATGAGAATGATCATCATTACCATCAAAACCAATCTACAACTGTAAGATTTATAACTATTTTTTTTTTTTGTGTTAGTGAGATCTATAGATCATGCGTTTAAGCTGTGACATCACAACTGACATTGTGTTAGGATAAATTGTCTACAACTCACCTCCTTGGATTATGGACGTTTCATGTACCTTGTGTAAATGCATAATGCATTGTGCACTAGGTTATCGTCATTTAATTTGAAGAGGACAACCTCATAGCAATAATAAAATTTGTCTCTACGTGACTTTAGGTCATGAGTTCAAATCATGAAACGTGCACTCGTTTAACTTTTAGTTTGTTGTGTTTTTACCATCTTTAGATAATATCATTACTTATAGGGTTTTTAATTAATATTCCAAGATGTATATGGTATATAATATATGAATAAGATAAATAGTTAAGACATAATTTTTGGAAAAGATATAGTGGGGTACACGTTGTTAGGACCATTGTTGAGGATAATGCTTAGTTGTCCATGTATAAATGTTGACCTTGTTGATCATTAGATGGCAATGAACCAAATAGTCTTTTATAATTTGTTTGACTTAGTTCTAATTATGAAATATAACAATTGGTTTACTAATTAAACAAAATGAAAAATTTTCTTAGGAGTGTGGCTTAACGATCAATAATATGAAAATTATATATTTTTGAGTGATTTAATGCTATTTTTGAAAAATCTAAACAATACTGAATATGAAGGTTACATACTCTTCTTTTGCATGTTTTAGCATAGTGAACTATAAAAGTAATTGTTAATTTAATTTTTATTTTCTCTTGACAGAGGATGAGAAGGATCTTTAGATATTTCAATTGCTGTGGAAAAGCTTGAAGTTCATGGAATTGATTTTTCATCCAATTTCCTTGTAATGAAAATATAGTAATTTGTGATTTCTACCTAAGTTTTGAGTGACTTTTATAAGAAATAGGAAAATGTTATAAATTTTGGAAATTGTGGTGATTGTTTCTTAACATCCTTTGCTTCTCTTGGGT</genome_strand>
        <mrna_strand>GAAATAGTTTCTTTATATTTATTTTCCTTGTTCATACTCTTACAATGGAATATCACAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGAATGGACCATGGCTATCTGTGCCACAATTTGGACATTGGGATCAAAAGGGTGTCTACCCTGACTACTCAATGGATTTTTCTAAAATAAGAGAAAATAGGAAACAAAACAAAAAGGACTTATCAAGAGCCAGTTTTGGAAATGAGAATGACCTCATTTTCTCTACCAAAAGTGATGCAAATGAGAATGATCATCATTACCATCAAAACCAATCTACAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGAGAAGGATCTTTAGATATTTCAATTGCTGTGGAAAAGCTTGAAGTTCATGGAATTGATTTTTCATCCAATTTCCTTGTAATGAAAATATAGTAATTTGTGATTTCTACCTAAGTTTTGAGTGACTTTTATAAGAAATAGGAAAATGTTATAAATTTTGGAAATTGTGGTGATTGTTTCTTAACATCCTTTGCTTCTCTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567689" ref_strand="+" ref_description="SGN-U567689 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>gaaaatccatgttgagagcaaagtgaggtatttcatagactatacaagaaaatagtgtgtgaagaataatagaatgtgagcgatattttagtaagacggaaatcaaaagagtgttgttccttttgagtgtgtagtattcactttgagtattgtattcgtgactacacaatgtaaaattccttattatagtaatatcagttgctcctctcggctcgtgattttttcccttattcagaagggtttccacgtaaaattcttggtgtcgttattttcctattttatttccattatttttatcatatatatttttgtgctcgtctgcgttttcccaacagacacctcattcatttatctattttcttttcttttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0039K13-uOZVR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0039K13.1" temp_strand="-" temp_description="C00SLm0039K13.1  CU928548.2 htgs_phase:3 submitted_to_sgn_as:C00SLm0039K13 sequenced_by:sanger upload_account_name:uk">
        <position start="110463" stop="104796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105438" g_stop="105099" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0039K13.1" gen_strand="-" ref_id="SGN-U567689" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0039K13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105438" e_stop="105099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATA-TTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAATAATATCAATTGCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTTATTTTCCCATTTTATTTTCATTACTTTTACAATATTTACTTTTGTGCTTGTCCGCGTTTTCCCAACA</genome_strand>
        <mrna_strand>GAAAATCCATGTTGAGAGCAAAGTGAGG---T--AT-TT-CATAGACTATACAAGAAAATAGTGTGTGAAGAATAATAGAATGTGAGCGATATTTTAGTAAGACGGAAATCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTATTCACTTTGAGTATTGTATTCGTGACTACACAATGTAAAATTCCTTATTATAGTAATATCAGTTGCTCCTCTCGGCTCGTGATTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTTATTTTCCTATTTTATTTCCATTATTTTTATCATATATATTTTTGTGCTCGTCTGCGTTTTCCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>14</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1881" PGL_stop="3129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1881" e_stop="2039"/>
            <exon e_start="2665" e_stop="3129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="1881" e_stop="2039" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2040" i_stop="2664" i_length="625"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2665" e_stop="3129" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1881" stop="2039"/>
              <exon start="2665" stop="3129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568388" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACCTTACAATATTTAATCTCTTATATATAAGCTTATTTGATCCAAAGGGAGATAATAGCTAACAAGAAACAAAAGATGGCTGAGTTCATTGAAGATACAAAGAACAAGAATGAAGATCCATCCATAAGCATTGTTTCTGATGGAAAATCTTCTAATG : AACCATCAAAAGTTGACCAAGTAGTAGAAACACAAGCAGAAAATAGTACACAAAATCAAGAAAAAGAAAATATTATTGCTCAACAAGGTCAAGAAGTAGATAAATCTAAAGAAAATTCTCAAAAACAAGAACAAGAACAAACCGAAGAAGAAGAAGAGGAGGAGGAAAATGCTAATGAAGAGGACAGAGCAAATTTTTCAACACGTCCAGGAAAAAGATCAGCTCCTAAACCTAAGACTGGTTGAGATTAATTATTTCAATATTGTGATAATTATTTCAACAAGCCTAGCTATTTTTTCTAGGGTTTTATTTTGGTTTGTTCTTCTCATTTTTAATATTGTAATGTGTAAGGAATATTCTTCTTGTTTCTTTGTTTGTTTTTCTCTTCCTTTTTTTTTTTTATAAATATGGTAATGATTAATATATTTTTTTGAAAAAATGTCATAAGAAATAATTAAATTCTTT</gDNA_template>
            <first_frame> E  P  Y  N  I  *  S  L  I  Y  K  L  I  *  S  K  G  R  *  *  L  T  R  N  K  R  W  L  S  S  L  K  I  Q  R  T  R  M  K  I  H  P  *  A  L  F  L  M  E  N  L  L  M  :  N  H  Q  K  L  T  K  *  *  K  H  K  Q  K  I  V  H  K  I  K  K  K  K  I  L  L  L  N  K  V  K  K  *  I  N  L  K  K  I  L  K  N  K  N  K  N  K  P  K  K  K  K  R  R  R  K  M  L  M  K  R  T  E  Q  I  F  Q  H  V  Q  E  K  D  Q  L  L  N  L  R  L  V  E  I  N  Y  F  N  I  V  I  I  I  S  T  S  L  A  I  F  S  R  V  L  F  W  F  V  L  L  I  F  N  I  V  M  C  K  E  Y  S  S  C  F  F  V  C  F  S  L  P  F  F  F  L  *  I  W  *  *  L  I  Y  F  F  E  K  M  S  *  E  I  I  K  F  F </first_frame>
            <second_frame>  N  L  T  I  F  N  L  L  Y  I  S  L  F  D  P  K  G  D  N  S  *  Q  E  T  K  D  G  *  V  H  *  R  Y  K  E  Q  E  *  R  S  I  H  K  H  C  F  *  W  K  I  F  *  * :   T  I  K  S  *  P  S  S  R  N  T  S  R  K  *  Y  T  K  S  R  K  R  K  Y  Y  C  S  T  R  S  R  S  R  *  I  *  R  K  F  S  K  T  R  T  R  T  N  R  R  R  R  R  G  G  G  K  C  *  *  R  G  Q  S  K  F  F  N  T  S  R  K  K  I  S  S  *  T  *  D  W  L  R  L  I  I  S  I  L  *  *  L  F  Q  Q  A  *  L  F  F  L  G  F  Y  F  G  L  F  F  S  F  L  I  L  *  C  V  R  N  I  L  L  V  S  L  F  V  F  L  F  L  F  F  F  Y  K  Y  G  N  D  *  Y  I  F  L  K  K  C  H  K  K  *  L  N  S   </second_frame>
            <third_frame>   T  L  Q  Y  L  I  S  Y  I  *  A  Y  L  I  Q  R  E  I  I  A  N  K  K  Q  K  M  A  E  F  I  E  D  T  K  N  K  N  E  D  P  S  I  S  I  V  S  D  G  K  S  S  N   : E  P  S  K  V  D  Q  V  V  E  T  Q  A  E  N  S  T  Q  N  Q  E  K  E  N  I  I  A  Q  Q  G  Q  E  V  D  K  S  K  E  N  S  Q  K  Q  E  Q  E  Q  T  E  E  E  E  E  E  E  E  N  A  N  E  E  D  R  A  N  F  S  T  R  P  G  K  R  S  A  P  K  P  K  T  G  *  D  *  L  F  Q  Y  C  D  N  Y  F  N  K  P  S  Y  F  F  *  G  F  I  L  V  C  S  S  H  F  *  Y  C  N  V  *  G  I  F  F  L  F  L  C  L  F  F  S  S  F  F  F  F  I  N  M  V  M  I  N  I  F  F  *  K  N  V  I  R  N  N  *  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1913" stop="2039"/>
                    <exon start="2665" stop="2909"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYLIQREIIANKKQKMAEFIEDTKNKNEDPSISIVSDGKSSNEPSKVDQVVETQAENSTQNQEKENIIAQQGQEVDKSKENSQKQEQEQTEEEEEEEENANEEDRANFSTRPGKRSAPKPKTG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2764" stop="3069"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INLKKILKNKNKNKPKKKKRRRKMLMKRTEQIFQHVQEKDQLLNLRLVEINYFNIVIIISTSLAIFSRVLFWFVLLIFNIVMCKEYSSCFFVCFSLPFFFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6876" PGL_stop="7388"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6876" e_stop="6961"/>
            <exon e_start="7070" e_stop="7388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.993" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="6876" e_stop="6961" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6962" i_stop="7069" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7070" e_stop="7388" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6876" stop="6961"/>
              <exon start="7070" stop="7388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAAAAATGGCTAATTTCTTCATAGATATAAAGAAGATTGAAGATTTGTTTGTATACATTGTTTCTTGTGGAAAATCTTCTAAAG : AAGGAGAAGAGAATGATGGAGGAAGAGCAAATGTTTCAAGACCTCCAGGCCAAAGACCAGCTCCTAGGCCTCAGACTGGTCGATAATAATTAATGTTAGTGATTATTATTTCAAAAAACTTTGTTGTTTTATGATAAAAAATAATTAATGTTATGATATTTTTTAAGATTGTAATTCTTAATCTGTTTTAAAAAGAACAATTAAATTGTGCAACATTTATTTGTACAATTACACCCATATATATGTAATATATACCTTTTTATCAATTTGTAGTCTATGTGTGACTTGTTTATACACGTATATACAATTACATACTCTC</gDNA_template>
            <first_frame> N  K  N  G  *  F  L  H  R  Y  K  E  D  *  R  F  V  C  I  H  C  F  L  W  K  I  F  *  R :   R  R  R  E  *  W  R  K  S  K  C  F  K  T  S  R  P  K  T  S  S  *  A  S  D  W  S  I  I  I  N  V  S  D  Y  Y  F  K  K  L  C  C  F  M  I  K  N  N  *  C  Y  D  I  F  *  D  C  N  S  *  S  V  L  K  R  T  I  K  L  C  N  I  Y  L  Y  N  Y  T  H  I  Y  V  I  Y  T  F  L  S  I  C  S  L  C  V  T  C  L  Y  T  Y  I  Q  L  H  T  L </first_frame>
            <second_frame>  I  K  M  A  N  F  F  I  D  I  K  K  I  E  D  L  F  V  Y  I  V  S  C  G  K  S  S  K   : E  G  E  E  N  D  G  G  R  A  N  V  S  R  P  P  G  Q  R  P  A  P  R  P  Q  T  G  R  *  *  L  M  L  V  I  I  I  S  K  N  F  V  V  L  *  *  K  I  I  N  V  M  I  F  F  K  I  V  I  L  N  L  F  *  K  E  Q  L  N  C  A  T  F  I  C  T  I  T  P  I  Y  M  *  Y  I  P  F  Y  Q  F  V  V  Y  V  *  L  V  Y  T  R  I  Y  N  Y  I  L   </second_frame>
            <third_frame>   *  K  W  L  I  S  S  *  I  *  R  R  L  K  I  C  L  Y  T  L  F  L  V  E  N  L  L  K  :  K  E  K  R  M  M  E  E  E  Q  M  F  Q  D  L  Q  A  K  D  Q  L  L  G  L  R  L  V  D  N  N  *  C  *  *  L  L  F  Q  K  T  L  L  F  Y  D  K  K  *  L  M  L  *  Y  F  L  R  L  *  F  L  I  C  F  K  K  N  N  *  I  V  Q  H  L  F  V  Q  L  H  P  Y  I  C  N  I  Y  L  F  I  N  L  *  S  M  C  D  L  F  I  H  V  Y  T  I  T  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0039K13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="15659" PGL_stop="16553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15659" e_stop="16553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="15659" e_stop="16553" e_length="895"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15659" stop="16553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTGTGAATGCTAATTATATTTCTCCAACTATATATTATATTTTAAGGAACAAGTATGTATTGAACCTTTCAACATTTATGATCTAAAATTAAGGGAGATAATAGCTAAGGGGAAAAAGCAAGATGGCCATTTTCCTGTAAGATACGAAGAATCAAGATATATTCAAAAACCTTGCTTCTAATGGTAAGAGTGAGTAATTAAAAACTATCATCCTATCTACATATATATACTCATTTCATCATATCATTGTCCTTGATATCAATTGTTGGGCTAAAATAACGTAACATTTAATATATTATTTATATTTGGTGTGATATATATAGTGGCGGATTCAGAATTTTCATTTAGAGGGTTTAAATAATAAAAGTATAAACGTGTAAATAAGTCTTTCGGAATGGGACCCTTGAATTTTTTTGGGTTTAAAACCACAGTTTTAGCGCGTAGATTCGAACTAGGGGCGTCCAGCTTAATATTCTGGGGTCTTGCCACTGAACCATCTATTTCTATTTGTTATTGAAGGGGTTCAAAATATATGAATCTACAGGAATACGGAAAATTTATCTTATATATATCTTATATTTTTTTGCCGAGGGATGGACCCTACATGGGTCCGCCCTGTACAAGATCAAGAAAATATAAGTACTCCCTCTATTTTACAAAGAATGATCTGGTTTGACTTGGTACGGAGTTTAAAAATATAAAGAATTTTTTTGAATTTTTATGGTCCTAAATTATAGTTAGATCAAATGTACAAATTGTTCTTTGATCTTGTGGCCTTAAACATGTCACGTGGAAAGTTAAAATTAAAATAATACCATAAAAAAGAAAGAGATTACTTTTTTTGAAACAGACTAAAAAAATAAAGTCATTCTTTTTGAAACGGACTGAGTAATA</gDNA_template>
            <first_frame> R  V  N  A  N  Y  I  S  P  T  I  Y  Y  I  L  R  N  K  Y  V  L  N  L  S  T  F  M  I  *  N  *  G  R  *  *  L  R  G  K  S  K  M  A  I  F  L  *  D  T  K  N  Q  D  I  F  K  N  L  A  S  N  G  K  S  E  *  L  K  T  I  I  L  S  T  Y  I  Y  S  F  H  H  I  I  V  L  D  I  N  C  W  A  K  I  T  *  H  L  I  Y  Y  L  Y  L  V  *  Y  I  *  W  R  I  Q  N  F  H  L  E  G  L  N  N  K  S  I  N  V  *  I  S  L  S  E  W  D  P  *  I  F  L  G  L  K  P  Q  F  *  R  V  D  S  N  *  G  R  P  A  *  Y  S  G  V  L  P  L  N  H  L  F  L  F  V  I  E  G  V  Q  N  I  *  I  Y  R  N  T  E  N  L  S  Y  I  Y  L  I  F  F  C  R  G  M  D  P  T  W  V  R  P  V  Q  D  Q  E  N  I  S  T  P  S  I  L  Q  R  M  I  W  F  D  L  V  R  S  L  K  I  *  R  I  F  L  N  F  Y  G  P  K  L  *  L  D  Q  M  Y  K  L  F  F  D  L  V  A  L  N  M  S  R  G  K  L  K  L  K  *  Y  H  K  K  E  R  D  Y  F  F  *  N  R  L  K  K  *  S  H  S  F  *  N  G  L  S  N  </first_frame>
            <second_frame>  V  *  M  L  I  I  F  L  Q  L  Y  I  I  F  *  G  T  S  M  Y  *  T  F  Q  H  L  *  S  K  I  K  G  D  N  S  *  G  E  K  A  R  W  P  F  S  C  K  I  R  R  I  K  I  Y  S  K  T  L  L  L  M  V  R  V  S  N  *  K  L  S  S  Y  L  H  I  Y  T  H  F  I  I  S  L  S  L  I  S  I  V  G  L  K  *  R  N  I  *  Y  I  I  Y  I  W  C  D  I  Y  S  G  G  F  R  I  F  I  *  R  V  *  I  I  K  V  *  T  C  K  *  V  F  R  N  G  T  L  E  F  F  W  V  *  N  H  S  F  S  A  *  I  R  T  R  G  V  Q  L  N  I  L  G  S  C  H  *  T  I  Y  F  Y  L  L  L  K  G  F  K  I  Y  E  S  T  G  I  R  K  I  Y  L  I  Y  I  L  Y  F  F  A  E  G  W  T  L  H  G  S  A  L  Y  K  I  K  K  I  *  V  L  P  L  F  Y  K  E  *  S  G  L  T  W  Y  G  V  *  K  Y  K  E  F  F  *  I  F  M  V  L  N  Y  S  *  I  K  C  T  N  C  S  L  I  L  W  P  *  T  C  H  V  E  S  *  N  *  N  N  T  I  K  K  K  E  I  T  F  F  E  T  D  *  K  N  K  V  I  L  F  E  T  D  *  V  I </second_frame>
            <third_frame>   C  E  C  *  L  Y  F  S  N  Y  I  L  Y  F  K  E  Q  V  C  I  E  P  F  N  I  Y  D  L  K  L  R  E  I  I  A  K  G  K  K  Q  D  G  H  F  P  V  R  Y  E  E  S  R  Y  I  Q  K  P  C  F  *  W  *  E  *  V  I  K  N  Y  H  P  I  Y  I  Y  I  L  I  S  S  Y  H  C  P  *  Y  Q  L  L  G  *  N  N  V  T  F  N  I  L  F  I  F  G  V  I  Y  I  V  A  D  S  E  F  S  F  R  G  F  K  *  *  K  Y  K  R  V  N  K  S  F  G  M  G  P  L  N  F  F  G  F  K  T  T  V  L  A  R  R  F  E  L  G  A  S  S  L  I  F  W  G  L  A  T  E  P  S  I  S  I  C  Y  *  R  G  S  K  Y  M  N  L  Q  E  Y  G  K  F  I  L  Y  I  S  Y  I  F  L  P  R  D  G  P  Y  M  G  P  P  C  T  R  S  R  K  Y  K  Y  S  L  Y  F  T  K  N  D  L  V  *  L  G  T  E  F  K  N  I  K  N  F  F  E  F  L  W  S  *  I  I  V  R  S  N  V  Q  I  V  L  *  S  C  G  L  K  H  V  T  W  K  V  K  I  K  I  I  P  *  K  R  K  R  L  L  F  L  K  Q  T  K  K  I  K  S  F  F  L  K  R  T  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0039K13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="19426" PGL_stop="19870"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19426" e_stop="19870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="19426" e_stop="19870" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19426" stop="19870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603567" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAACCTAACTCAATGACATAATTTCTGACTAATAGATATGAAATGACATTCCTTAGTATGACTGTACACTGAATATGAGCAGCGTACACAAATGAAAGGATCCAAGATTACGTATAAATTAATATTCTTTTACTAGCAATAATTTGAAGCACATGATCCTGAACAATTATTATGAATTTAATTGTCTTAAATGTTAGGTGGGTTTATTTTTATTTTTGTCTTAAATGATAGGTAGGGTATATTTTACTCTTTTGTTCTTTTCTAAAAATAAATAATCATGAAATGACTTCTCAACTTTATTTATATTATAGCTATTTTAATTTATTTAAGACTAAGAAGGAAAGTATATTTAGGAGCGGAGTTATCTTGAACGAAGGATGATTCATTATACACTTTTTTTATATGTGATGTTTAGAAGTTAAATGTTAGATATTATAATTATC</gDNA_template>
            <first_frame> F  N  L  T  Q  *  H  N  F  *  L  I  D  M  K  *  H  S  L  V  *  L  Y  T  E  Y  E  Q  R  T  Q  M  K  G  S  K  I  T  Y  K  L  I  F  F  Y  *  Q  *  F  E  A  H  D  P  E  Q  L  L  *  I  *  L  S  *  M  L  G  G  F  I  F  I  F  V  L  N  D  R  *  G  I  F  Y  S  F  V  L  F  *  K  *  I  I  M  K  *  L  L  N  F  I  Y  I  I  A  I  L  I  Y  L  R  L  R  R  K  V  Y  L  G  A  E  L  S  *  T  K  D  D  S  L  Y  T  F  F  I  C  D  V  *  K  L  N  V  R  Y  Y  N  Y  </first_frame>
            <second_frame>  L  T  *  L  N  D  I  I  S  D  *  *  I  *  N  D  I  P  *  Y  D  C  T  L  N  M  S  S  V  H  K  *  K  D  P  R  L  R  I  N  *  Y  S  F  T  S  N  N  L  K  H  M  I  L  N  N  Y  Y  E  F  N  C  L  K  C  *  V  G  L  F  L  F  L  S  *  M  I  G  R  V  Y  F  T  L  L  F  F  S  K  N  K  *  S  *  N  D  F  S  T  L  F  I  L  *  L  F  *  F  I  *  D  *  E  G  K  Y  I  *  E  R  S  Y  L  E  R  R  M  I  H  Y  T  L  F  L  Y  V  M  F  R  S  *  M  L  D  I  I  I  I </second_frame>
            <third_frame>   *  P  N  S  M  T  *  F  L  T  N  R  Y  E  M  T  F  L  S  M  T  V  H  *  I  *  A  A  Y  T  N  E  R  I  Q  D  Y  V  *  I  N  I  L  L  L  A  I  I  *  S  T  *  S  *  T  I  I  M  N  L  I  V  L  N  V  R  W  V  Y  F  Y  F  C  L  K  *  *  V  G  Y  I  L  L  F  C  S  F  L  K  I  N  N  H  E  M  T  S  Q  L  Y  L  Y  Y  S  Y  F  N  L  F  K  T  K  K  E  S  I  F  R  S  G  V  I  L  N  E  G  *  F  I  I  H  F  F  Y  M  *  C  L  E  V  K  C  *  I  L  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0039K13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="51217" PGL_stop="50690"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51217" e_stop="50690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="51217" e_stop="50690" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51217" stop="50690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583599" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGTCTTGGGCATTTGGCAAAACTACTCATAATTTAATAATTTCTTGAAGTTGTATAAACATATGGATATGGTGATGAAGTTGGGAACATCAAGCGCGGTGGTGATATTCACAAAGAGTAGTTGTTGCATTTCTCATAGCATTGAAACCCTAATCCGTAGCTTTGGAGCAAACCCTACCGTTTACGAGCTTGATACACATCCAAATGGGAAGCAAATGGAGAAGGCATTGATGGAGCTAGGGTGTCAACCAAGTGTACCAACAATATTTATAGGGAAAGAGTTAGTTGGTGGTGCAAATGAGATAATGAGCCTTAATGTGAGGGGCAAACTTAAACAATTGCTCATTAGGGCTAATGCCATTTGGGTATAAAAAGTAATTATATAATAACAAGCGTATTTGGAGGTTTTTATATAATAAATATATACAACTTATACATAGAGTCTTTTAGCTTCTTTGGATGGTTGTTTTATCTACCTATTTGATTAAGTTCTTGATGTATGAACAAATAATAATATCTTATACTAT</gDNA_template>
            <first_frame> *  V  L  G  I  W  Q  N  Y  S  *  F  N  N  F  L  K  L  Y  K  H  M  D  M  V  M  K  L  G  T  S  S  A  V  V  I  F  T  K  S  S  C  C  I  S  H  S  I  E  T  L  I  R  S  F  G  A  N  P  T  V  Y  E  L  D  T  H  P  N  G  K  Q  M  E  K  A  L  M  E  L  G  C  Q  P  S  V  P  T  I  F  I  G  K  E  L  V  G  G  A  N  E  I  M  S  L  N  V  R  G  K  L  K  Q  L  L  I  R  A  N  A  I  W  V  *  K  V  I  I  *  *  Q  A  Y  L  E  V  F  I  *  *  I  Y  T  T  Y  T  *  S  L  L  A  S  L  D  G  C  F  I  Y  L  F  D  *  V  L  D  V  *  T  N  N  N  I  L  Y  Y </first_frame>
            <second_frame>  K  S  W  A  F  G  K  T  T  H  N  L  I  I  S  *  S  C  I  N  I  W  I  W  *  *  S  W  E  H  Q  A  R  W  *  Y  S  Q  R  V  V  V  A  F  L  I  A  L  K  P  *  S  V  A  L  E  Q  T  L  P  F  T  S  L  I  H  I  Q  M  G  S  K  W  R  R  H  *  W  S  *  G  V  N  Q  V  Y  Q  Q  Y  L  *  G  K  S  *  L  V  V  Q  M  R  *  *  A  L  M  *  G  A  N  L  N  N  C  S  L  G  L  M  P  F  G  Y  K  K  *  L  Y  N  N  K  R  I  W  R  F  L  Y  N  K  Y  I  Q  L  I  H  R  V  F  *  L  L  W  M  V  V  L  S  T  Y  L  I  K  F  L  M  Y  E  Q  I  I  I  S  Y  T   </second_frame>
            <third_frame>   S  L  G  H  L  A  K  L  L  I  I  *  *  F  L  E  V  V  *  T  Y  G  Y  G  D  E  V  G  N  I  K  R  G  G  D  I  H  K  E  *  L  L  H  F  S  *  H  *  N  P  N  P  *  L  W  S  K  P  Y  R  L  R  A  *  Y  T  S  K  W  E  A  N  G  E  G  I  D  G  A  R  V  S  T  K  C  T  N  N  I  Y  R  E  R  V  S  W  W  C  K  *  D  N  E  P  *  C  E  G  Q  T  *  T  I  A  H  *  G  *  C  H  L  G  I  K  S  N  Y  I  I  T  S  V  F  G  G  F  Y  I  I  N  I  Y  N  L  Y  I  E  S  F  S  F  F  G  W  L  F  Y  L  P  I  *  L  S  S  *  C  M  N  K  *  *  Y  L  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51184" stop="50846"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNNFLKLYKHMDMVMKLGTSSAVVIFTKSSCCISHSIETLIRSFGANPTVYELDTHPNGKQMEKALMELGCQPSVPTIFIGKELVGGANEIMSLNVRGKLKQLLIRANAIWV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="73656" PGL_stop="74329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73656" e_stop="74329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73656" e_stop="74329" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73656" stop="74329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCACTTCACAACTTCTTTCCTCTTTAGTCTTTACTAAAAGCTATATACATATATATCTTGACATTTGAGCCAAACTACTAATTAATTATTTCTTGAAGTTGTTTAAATATGGATATGGTGATGAAGTTGGGAGCAACAAGTGGGGTGGTGATTTTCACCAAGAGTAGTTGTTGCATTTCTCACAGCATTGAAACCCTAATTCGTAGTTTTGGAGCAAACCCTATAATTTATGAGCTCGATACACATCCAAATGGGAAGCAAATGGAAAAGGCATTGATGGAGCTAGGGTGTCAACCAAGTGTGCCAGCAATATTTATAGGGAAAGAGTTGGTTGGTGGTGCAAATGAGATAATGAGCCTTAATGTGAGGGGCAAGCTTAAACAATTGCTCATTAGGGCTAATGCCATTTGGATATAATGAAATTAATTAATTAATAAATTGACTAGCTATGTATATAGCAATTAGTCTAAATGTTTTGATGGTAAATTTACCAAGTAATACAGATACTCTTTTTGTTTTCTCTCACAATTTGCTTCTTCATGTATAAATAAAAACTACTAATACTTTGGTCATAGCAAGTCTTTTCTTTTTGCAATCTAGTGATGATATGGGTCAAGTTGAAACCTCCACAGGAACCTTCATGGGTGACAACTTATGTTATTCTCATTTGAG</gDNA_template>
            <first_frame> I  H  F  T  T  S  F  L  F  S  L  Y  *  K  L  Y  T  Y  I  S  *  H  L  S  Q  T  T  N  *  L  F  L  E  V  V  *  I  W  I  W  *  *  S  W  E  Q  Q  V  G  W  *  F  S  P  R  V  V  V  A  F  L  T  A  L  K  P  *  F  V  V  L  E  Q  T  L  *  F  M  S  S  I  H  I  Q  M  G  S  K  W  K  R  H  *  W  S  *  G  V  N  Q  V  C  Q  Q  Y  L  *  G  K  S  W  L  V  V  Q  M  R  *  *  A  L  M  *  G  A  S  L  N  N  C  S  L  G  L  M  P  F  G  Y  N  E  I  N  *  L  I  N  *  L  A  M  Y  I  A  I  S  L  N  V  L  M  V  N  L  P  S  N  T  D  T  L  F  V  F  S  H  N  L  L  L  H  V  *  I  K  T  T  N  T  L  V  I  A  S  L  F  F  L  Q  S  S  D  D  M  G  Q  V  E  T  S  T  G  T  F  M  G  D  N  L  C  Y  S  H  L   </first_frame>
            <second_frame>  F  T  S  Q  L  L  S  S  L  V  F  T  K  S  Y  I  H  I  Y  L  D  I  *  A  K  L  L  I  N  Y  F  L  K  L  F  K  Y  G  Y  G  D  E  V  G  S  N  K  W  G  G  D  F  H  Q  E  *  L  L  H  F  S  Q  H  *  N  P  N  S  *  F  W  S  K  P  Y  N  L  *  A  R  Y  T  S  K  W  E  A  N  G  K  G  I  D  G  A  R  V  S  T  K  C  A  S  N  I  Y  R  E  R  V  G  W  W  C  K  *  D  N  E  P  *  C  E  G  Q  A  *  T  I  A  H  *  G  *  C  H  L  D  I  M  K  L  I  N  *  *  I  D  *  L  C  I  *  Q  L  V  *  M  F  *  W  *  I  Y  Q  V  I  Q  I  L  F  L  F  S  L  T  I  C  F  F  M  Y  K  *  K  L  L  I  L  W  S  *  Q  V  F  S  F  C  N  L  V  M  I  W  V  K  L  K  P  P  Q  E  P  S  W  V  T  T  Y  V  I  L  I  *  </second_frame>
            <third_frame>   S  L  H  N  F  F  P  L  *  S  L  L  K  A  I  Y  I  Y  I  L  T  F  E  P  N  Y  *  L  I  I  S  *  S  C  L  N  M  D  M  V  M  K  L  G  A  T  S  G  V  V  I  F  T  K  S  S  C  C  I  S  H  S  I  E  T  L  I  R  S  F  G  A  N  P  I  I  Y  E  L  D  T  H  P  N  G  K  Q  M  E  K  A  L  M  E  L  G  C  Q  P  S  V  P  A  I  F  I  G  K  E  L  V  G  G  A  N  E  I  M  S  L  N  V  R  G  K  L  K  Q  L  L  I  R  A  N  A  I  W  I  *  *  N  *  L  I  N  K  L  T  S  Y  V  Y  S  N  *  S  K  C  F  D  G  K  F  T  K  *  Y  R  Y  S  F  C  F  L  S  Q  F  A  S  S  C  I  N  K  N  Y  *  Y  F  G  H  S  K  S  F  L  F  A  I  *  *  *  Y  G  S  S  *  N  L  H  R  N  L  H  G  *  Q  L  M  L  F  S  F  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73754" stop="74074"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCLNMDMVMKLGATSGVVIFTKSSCCISHSIETLIRSFGANPIIYELDTHPNGKQMEKALMELGCQPSVPAIFIGKELVGGANEIMSLNVRGKLKQLLIRANAIWI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="79714" PGL_stop="79023"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79714" e_stop="79023"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79714" e_stop="79023" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79714" stop="79023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGCCTTTTCTCTTCTAGTTTCCTTCACATATTTTTCTTCCAATAAAAGTATATCTTTCACAAAAGACTTAAAAACATTATGGAAATGGTGATGAAGATGGGAGCACAAAGTCCAGTGGTGATTTTCAGTAGAAGCACTTGTTGCATTTCTCATACCATCGAAACCCTAATTCGCAATTTTGGAGCAAACCCTATTGTTTATGAGCTTGATAGACTTCAAAATGGGAAGGAATTAGAGAGGGCATTGGTTGATTTAGGGTGTCAACAAATTGTGCCTGTTGTGTTCATTGGAAATGAGTTAGTTGGAGGTTCTAATGAAATTATGAGTCTCAATATTAGAGACAAGCTCAAGCAATTGCTCATAAAGGCTAATGCAATTTGGGTATAAAAAATATATGCTTGTAACTTTTTTTAAAAAATAACCATGGGTCAGGGCAACTTATGCACATCTCGACTATAGATTCATGAGTACTTGTGCTGCCTACATCAACATAGGTACCGGATAACTCTGTCCACTAAGACTTGGACCGATGAAAAGAAATCACCTCATATTTGGCTTGAGAGAGATTTACAAGATTGAAATTTGATAAGCTAAATTAATTTCTAGGTCATGATGTCATTTTTGGGCAGTGAAAGACCTAGATATATGAGGTTTTCTTTTATTCACCTTTTTATCTCCATTTTTTGTTGT</gDNA_template>
            <first_frame> K  A  F  S  L  L  V  S  F  T  Y  F  S  S  N  K  S  I  S  F  T  K  D  L  K  T  L  W  K  W  *  *  R  W  E  H  K  V  Q  W  *  F  S  V  E  A  L  V  A  F  L  I  P  S  K  P  *  F  A  I  L  E  Q  T  L  L  F  M  S  L  I  D  F  K  M  G  R  N  *  R  G  H  W  L  I  *  G  V  N  K  L  C  L  L  C  S  L  E  M  S  *  L  E  V  L  M  K  L  *  V  S  I  L  E  T  S  S  S  N  C  S  *  R  L  M  Q  F  G  Y  K  K  Y  M  L  V  T  F  F  K  K  *  P  W  V  R  A  T  Y  A  H  L  D  Y  R  F  M  S  T  C  A  A  Y  I  N  I  G  T  G  *  L  C  P  L  R  L  G  P  M  K  R  N  H  L  I  F  G  L  R  E  I  Y  K  I  E  I  *  *  A  K  L  I  S  R  S  *  C  H  F  W  A  V  K  D  L  D  I  *  G  F  L  L  F  T  F  L  S  P  F  F  V   </first_frame>
            <second_frame>  K  P  F  L  F  *  F  P  S  H  I  F  L  P  I  K  V  Y  L  S  Q  K  T  *  K  H  Y  G  N  G  D  E  D  G  S  T  K  S  S  G  D  F  Q  *  K  H  L  L  H  F  S  Y  H  R  N  P  N  S  Q  F  W  S  K  P  Y  C  L  *  A  *  *  T  S  K  W  E  G  I  R  E  G  I  G  *  F  R  V  S  T  N  C  A  C  C  V  H  W  K  *  V  S  W  R  F  *  *  N  Y  E  S  Q  Y  *  R  Q  A  Q  A  I  A  H  K  G  *  C  N  L  G  I  K  N  I  C  L  *  L  F  L  K  N  N  H  G  S  G  Q  L  M  H  I  S  T  I  D  S  *  V  L  V  L  P  T  S  T  *  V  P  D  N  S  V  H  *  D  L  D  R  *  K  E  I  T  S  Y  L  A  *  E  R  F  T  R  L  K  F  D  K  L  N  *  F  L  G  H  D  V  I  F  G  Q  *  K  T  *  I  Y  E  V  F  F  Y  S  P  F  Y  L  H  F  L  L  </second_frame>
            <third_frame>   S  L  F  S  S  S  F  L  H  I  F  F  F  Q  *  K  Y  I  F  H  K  R  L  K  N  I  M  E  M  V  M  K  M  G  A  Q  S  P  V  V  I  F  S  R  S  T  C  C  I  S  H  T  I  E  T  L  I  R  N  F  G  A  N  P  I  V  Y  E  L  D  R  L  Q  N  G  K  E  L  E  R  A  L  V  D  L  G  C  Q  Q  I  V  P  V  V  F  I  G  N  E  L  V  G  G  S  N  E  I  M  S  L  N  I  R  D  K  L  K  Q  L  L  I  K  A  N  A  I  W  V  *  K  I  Y  A  C  N  F  F  *  K  I  T  M  G  Q  G  N  L  C  T  S  R  L  *  I  H  E  Y  L  C  C  L  H  Q  H  R  Y  R  I  T  L  S  T  K  T  W  T  D  E  K  K  S  P  H  I  W  L  E  R  D  L  Q  D  *  N  L  I  S  *  I  N  F  *  V  M  M  S  F  L  G  S  E  R  P  R  Y  M  R  F  S  F  I  H  L  F  I  S  I  F  C  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79667" stop="79326"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYIFHKRLKNIMEMVMKMGAQSPVVIFSRSTCCISHTIETLIRNFGANPIVYELDRLQNGKELERALVDLGCQQIVPVVFIGNELVGGSNEIMSLNIRDKLKQLLIKANAIWV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="88741" PGL_stop="84200"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87267" e_stop="87207"/>
            <exon e_start="86254" e_stop="84943"/>
            <exon e_start="84858" e_stop="84846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.522" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87267" e_stop="87207" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="86254" e_stop="84943" e_length="1312"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.522">
            <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84858" e_stop="84846" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87267" stop="87207"/>
              <exon start="86254" stop="85515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85549" stop="84943"/>
              <exon start="84858" stop="84846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT : GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGCGTAAGTAAAGATTTTAGGTGTTCTTCTGATACTAATAATGCATTATACTATCTATTCAGTTGAGCTTTTTCTACTGCATGCAGGTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAGGTGGCATCCTGTTTTAGTTTTCAATATTTTATACTTTTATTTTTATTTGGCTATGATAATGACATGAGTTGAGCTTAAATGAAACATTGAAGATTCATATAAGACGAACCTCGACAAGTTATTGTTGTTATTTGGTTATGATAATGACATCGAGGCATAGTTGTTATTGTTGTTGTGCTTCTGCGGTTCCATTAACTTTCCTCTATTAAGCCGTACAATGTCAATTTCAGTTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAGGTATCGACTTCAAAAGAATCTCTTCTTCAATCAATTAATTACTCCTTCTGTCTCAGTTTATGCGGCACCGTTTGACTTTGCACAAAGTTTAAGTAAAACGGGAAGACTTTTGAATCTTGTCGTCTATACCAAACCTTAGGTATTTGTGTGGTTGTAAATTATTTCATTAAGCGTAAAAAAGTTTTTAATGTTAGGTTGTTTTTAGTTATTAAAAAAATGACATTCTTTTTGGGACAGACTAAGACTAAAAAAGAATGGTGTCACATAAATTGTGACACAGGAGTACTTGCTTTGAAAGGCTAGAATGTAATGCTTTAGCTACGGGTCTGGTCCTTCAGAACCCTATAAAATGTCACTAATAAGTACAAATAACTGATTTTGAAGCCAGTAAATCAAATAATTTGTGGTAGAATTTCTACCACGAACCATAATGTTCAAATCCTGTATCTACCTCTGCTAGTTATATGTAGGTACTTTGTCAGACATCTGCTGCTATTTATATTTTCACATGAAGTATCATTGCTTCTAAAATTTTCACCGGAAACAAAAATTATTTACTGAGTAGTTACATTTCTCAGATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAG : AGATTTCTAAACA</gDNA_template>
            <first_frame> S  V  Y  S  G  R  H  N  W  V  F  G  S  S  C  R  A  T  S  W   : *  L  G  F  L  R  S  I  L  D  W  E  H  I  F  S  S  F  G  N  R  K  Y  F  P  S  V  S  K  D  F  R  C  S  S  D  T  N  N  A  L  Y  Y  L  F  S  *  A  F  S  T  A  C  R  S  L  W  L  I  L  L  F  I  M  *  A  P  S  G  R  H  *  W  I  F  I  L  F  S  *  L  P  G  E  N  R  Q  T  *  S  S  S  F  L  R  W  H  P  V  L  V  F  N  I  L  Y  F  Y  F  Y  L  A  M  I  M  T  *  V  E  L  K  *  N  I  E  D  S  Y  K  T  N  L  D  K  L  L  L  L  F  G  Y  D  N  D  I  E  A  *  L  L  L  L  L  C  F  C  G  S  I  N  F  P  L  L  S  R  T  M  S  I  S  V  S  Y  L  I  G  V  P  I  L  G  Y  S  L  D  I  G  K  E  H  V  N  L  I  D  E  R  L  E  K  L  I  Y  S  G  Q  L  D  S  K  E  L  D  R  Y  R  L  Q  K  N  L  F  F  N  Q  L  I  T  P  S  V  S  V  Y  A  A  P  F  D  F  A  Q  S  L  S  K  T  G  R  L  L  N  L  V  V  Y  T  K  P  *  V  F  V  W  L  *  I  I  S  L  S  V  K  K  F  L  M  L  G  C  F  *  L  L  K  K  *  H  S  F  W  D  R  L  R  L  K  K  N  G  V  T  *  I  V  T  Q  E  Y  L  L  *  K  A  R  M  *  C  F  S  Y  G  S  G  P  S  E  P  Y  K  M  S  L  I  S  T  N  N  *  F  *  S  Q  *  I  K  *  F  V  V  E  F  L  P  R  T  I  M  F  K  S  C  I  Y  L  C  *  L  Y  V  G  T  L  S  D  I  C  C  Y  L  Y  F  H  M  K  Y  H  C  F  *  N  F  H  R  K  Q  K  L  F  T  E  *  L  H  F  S  D  W  Q  W  *  R  W  P  G  *  Q  Q  K  G  *  S  M  I  K  L  S  V  N  Q  L  T  F  S  L  F  R :   D  F  *  T </first_frame>
            <second_frame>  L  F  T  V  V  G  T  T  G  F  L  G  V  L  A  G  Q  L  P  G  :  D  W  G  F  F  V  P  Y  L  I  G  S  I  S  L  V  V  L  G  I  G  S  T  S  P  A  *  V  K  I  L  G  V  L  L  I  L  I  M  H  Y  T  I  Y  S  V  E  L  F  L  L  H  A  G  R  Y  G  S  F  F  Y  S  L  C  R  L  L  Q  A  A  I  D  G  F  S  S  F  F  P  D  Y  Q  E  R  I  A  R  H  E  A  A  H  F  L  G  G  I  L  F  *  F  S  I  F  Y  T  F  I  F  I  W  L  *  *  *  H  E  L  S  L  N  E  T  L  K  I  H  I  R  R  T  S  T  S  Y  C  C  Y  L  V  M  I  M  T  S  R  H  S  C  Y  C  C  C  A  S  A  V  P  L  T  F  L  Y  *  A  V  Q  C  Q  F  Q  F  P  T  *  *  V  F  R  S  L  D  I  H  W  I  L  G  K  S  M  S  I  *  L  M  K  G  W  K  N  L  S  T  V  A  S  L  T  Q  K  N  S  T  G  I  D  F  K  R  I  S  S  S  I  N  *  L  L  L  L  S  Q  F  M  R  H  R  L  T  L  H  K  V  *  V  K  R  E  D  F  *  I  L  S  S  I  P  N  L  R  Y  L  C  G  C  K  L  F  H  *  A  *  K  S  F  *  C  *  V  V  F  S  Y  *  K  N  D  I  L  F  G  T  D  *  D  *  K  R  M  V  S  H  K  L  *  H  R  S  T  C  F  E  R  L  E  C  N  A  L  A  T  G  L  V  L  Q  N  P  I  K  C  H  *  *  V  Q  I  T  D  F  E  A  S  K  S  N  N  L  W  *  N  F  Y  H  E  P  *  C  S  N  P  V  S  T  S  A  S  Y  M  *  V  L  C  Q  T  S  A  A  I  Y  I  F  T  *  S  I  I  A  S  K  I  F  T  G  N  K  N  Y  L  L  S  S  Y  I  S  Q  I  G  S  G  S  D  G  R  A  S  S  R  R  A  K  V  *  *  S  C  R  S  I  S  *  P  F  H  S  S   : E  I  S  K   </second_frame>
            <third_frame>   C  L  Q  W  *  A  Q  L  G  F  W  E  F  L  Q  G  N  F  L  V :   I  G  V  S  S  F  H  T  *  L  G  A  Y  L  *  *  F  W  E  S  E  V  L  P  Q  R  K  *  R  F  *  V  F  F  *  Y  *  *  C  I  I  L  S  I  Q  L  S  F  F  Y  C  M  Q  V  V  M  A  H  S  F  I  H  Y  V  G  S  F  R  P  P  L  M  D  F  H  P  F  F  L  I  T  R  R  E  S  P  D  M  K  Q  L  I  S  *  V  A  S  C  F  S  F  Q  Y  F  I  L  L  F  L  F  G  Y  D  N  D  M  S  *  A  *  M  K  H  *  R  F  I  *  D  E  P  R  Q  V  I  V  V  I  W  L  *  *  *  H  R  G  I  V  V  I  V  V  V  L  L  R  F  H  *  L  S  S  I  K  P  Y  N  V  N  F  S  F  L  P  N  R  C  S  D  P  W  I  F  T  G  Y  W  E  R  A  C  Q  F  N  *  *  K  V  G  K  T  Y  L  Q  W  P  A  *  L  K  R  T  R  Q  V  S  T  S  K  E  S  L  L  Q  S  I  N  Y  S  F  C  L  S  L  C  G  T  V  *  L  C  T  K  F  K  *  N  G  K  T  F  E  S  C  R  L  Y  Q  T  L  G  I  C  V  V  V  N  Y  F  I  K  R  K  K  V  F  N  V  R  L  F  L  V  I  K  K  M  T  F  F  L  G  Q  T  K  T  K  K  E  W  C  H  I  N  C  D  T  G  V  L  A  L  K  G  *  N  V  M  L  *  L  R  V  W  S  F  R  T  L  *  N  V  T  N  K  Y  K  *  L  I  L  K  P  V  N  Q  I  I  C  G  R  I  S  T  T  N  H  N  V  Q  I  L  Y  L  P  L  L  V  I  C  R  Y  F  V  R  H  L  L  L  F  I  F  S  H  E  V  S  L  L  L  K  F  S  P  E  T  K  I  I  Y  *  V  V  T  F  L  R  L  A  V  V  A  M  A  G  L  A  A  E  G  L  K  Y  D  K  V  V  G  Q  S  A  D  L  F  T  L  Q  :  R  F  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85811" stop="85473"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLLLCFCGSINFPLLSRTMSISVSYLIGVPILGYSLDIGKEHVNLIDERLEKLIYSGQLDSKELDRYRLQKNLFFNQLITPSVSVYAAPFDFAQSLSKTGRLLNLVVYTKP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86173" stop="85955"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKILGVLLILIMHYTIYSVELFLLHAGRYGSFFYSLCRLLQAAIDGFSSFFPDYQERIARHEAAHFLGGILF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87269" e_stop="87207"/>
            <exon e_start="86254" e_stop="86178"/>
            <exon e_start="86094" e_stop="85972"/>
            <exon e_start="85741" e_stop="85612"/>
            <exon e_start="85033" e_stop="84943"/>
            <exon e_start="84858" e_stop="84793"/>
            <exon e_start="84420" e_stop="84260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.522" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="0.970"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87269" e_stop="87207" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86254" e_stop="86178" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.954">
            <gDNA_intron_boundary i_start="86177" i_stop="86095" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86094" e_stop="85972" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85741" e_stop="85612" e_length="130"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.980">
            <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85033" e_stop="84943" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.957" acc_prob="0.522">
            <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="0.970">
            <gDNA_exon_boundary e_start="84858" e_stop="84793" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="84792" i_stop="84421" i_length="372"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="84420" e_stop="84260" e_length="161"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87269" stop="87207"/>
              <exon start="86254" stop="86178"/>
              <exon start="86094" stop="85972"/>
              <exon start="85741" stop="85612"/>
              <exon start="85033" stop="84943"/>
              <exon start="84858" stop="84793"/>
              <exon start="84420" stop="84260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT : GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGC : GTCGTTATGGCTCATTCTTTTATTCATTATGTAGGCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG : TTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAG : ATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAG : AGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCG : GTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATCGGTCGTAGACTGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAGAAATGTGACTAAACACTTGTACATGAAAAA</gDNA_template>
            <first_frame> F  L  F  T  V  V  G  T  T  G  F  L  G  V  L  A  G  Q  L  P  G  :  D  W  G  F  F  V  P  Y  L  I  G  S  I  S  L  V  V  L  G  I  G  S  T  S  P  A :   S  L  W  L  I  L  L  F  I  M  *  A  P  S  G  R  H  *  W  I  F  I  L  F  S  *  L  P  G  E  N  R  Q  T  *  S  S  S  F  L  S :   F  L  P  N  R  C  S  D  P  W  I  F  T  G  Y  W  E  R  A  C  Q  F  N  *  *  K  V  G  K  T  Y  L  Q  W  P  A  *  L  K  R  T  R  Q  :  I  G  S  G  S  D  G  R  A  S  S  R  R  A  K  V  *  *  S  C  R  S  I  S  *  P  F  H  S  S   : E  I  S  K  Q  E  Q  A  V  A  *  Q  R  P  A  A  E  P  Y  K  M  G   : G  L  I  C  C  F  T  T  E  K  *  *  Q  A  S  *  S  P  N  S  G  N  D  K  Q  G  I  G  R  R  L  H  R  S  N  *  E  S  S  L  I  L  L  Q  K  C  D  *  T  L  V  H  E  K </first_frame>
            <second_frame>  F  C  L  Q  W  *  A  Q  L  G  F  W  E  F  L  Q  G  N  F  L  V :   I  G  V  S  S  F  H  T  *  L  G  A  Y  L  *  *  F  W  E  S  E  V  L  P  Q   : R  R  Y  G  S  F  F  Y  S  L  C  R  L  L  Q  A  A  I  D  G  F  S  S  F  F  P  D  Y  Q  E  R  I  A  R  H  E  A  A  H  F  L   : V  S  Y  L  I  G  V  P  I  L  G  Y  S  L  D  I  G  K  E  H  V  N  L  I  D  E  R  L  E  K  L  I  Y  S  G  Q  L  D  S  K  E  L  D  R :   L  A  V  V  A  M  A  G  L  A  A  E  G  L  K  Y  D  K  V  V  G  Q  S  A  D  L  F  T  L  Q  :  R  F  L  N  R  S  K  P  S  L  S  K  D  Q  Q  Q  N  L  T  R  W  A  :  V  L  F  A  A  S  L  L  K  N  N  S  K  L  H  E  A  L  I  A  A  M  T  N  K  A  S  V  V  D  C  I  E  A  I  E  K  A  A  *  S  Y  S  R  N  V  T  K  H  L  Y  M  K   </second_frame>
            <third_frame>   S  V  Y  S  G  R  H  N  W  V  F  G  S  S  C  R  A  T  S  W   : *  L  G  F  L  R  S  I  L  D  W  E  H  I  F  S  S  F  G  N  R  K  Y  F  P  S  :  V  V  M  A  H  S  F  I  H  Y  V  G  S  F  R  P  P  L  M  D  F  H  P  F  F  L  I  T  R  R  E  S  P  D  M  K  Q  L  I  S  *  :  F  P  T  *  *  V  F  R  S  L  D  I  H  W  I  L  G  K  S  M  S  I  *  L  M  K  G  W  K  N  L  S  T  V  A  S  L  T  Q  K  N  S  T   : D  W  Q  W  *  R  W  P  G  *  Q  Q  K  G  *  S  M  I  K  L  S  V  N  Q  L  T  F  S  L  F  R :   D  F  *  T  G  A  S  R  R  L  A  K  T  S  S  R  T  L  Q  D  G  R :   S  Y  L  L  L  H  Y  *  K  I  I  A  S  F  M  K  P  *  *  R  Q  *  Q  T  R  H  R  S  *  T  A  *  K  Q  L  R  K  Q  L  D  L  T  P  E  M  *  L  N  T  C  T  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86205" stop="86178"/>
                    <exon start="86094" stop="85972"/>
                    <exon start="85741" stop="85612"/>
                    <exon start="85033" stop="84943"/>
                    <exon start="84858" stop="84793"/>
                    <exon start="84420" stop="84301"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FWESEVLPQRRYGSFFYSLCRLLQAAIDGFSSFFPDYQERIARHEAAHFLVSYLIGVPILGYSLDIGKEHVNLIDERLEKLIYSGQLDSKELDRLAVVAMAGLAAEGLKYDKVVGQSADLFTLQRFLNRSKPSLSKDQQQNLTRWAVLFAASLLKNNSKLHEALIAAMTNKASVVDCIEAIEKAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="88685" e_stop="88506"/>
            <exon e_start="87751" e_stop="87677"/>
            <exon e_start="87275" e_stop="87207"/>
            <exon e_start="86254" e_stop="86178"/>
            <exon e_start="86060" e_stop="85972"/>
            <exon e_start="85741" e_stop="85612"/>
            <exon e_start="85033" e_stop="84943"/>
            <exon e_start="84858" e_stop="84793"/>
            <exon e_start="84420" e_stop="84249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.983"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.522" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="88685" e_stop="88506" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88505" i_stop="87752" i_length="754"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87751" e_stop="87677" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="87676" i_stop="87276" i_length="401"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87275" e_stop="87207" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86254" e_stop="86178" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.916">
            <gDNA_intron_boundary i_start="86177" i_stop="86061" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86060" e_stop="85972" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85741" e_stop="85612" e_length="130"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.980">
            <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85033" e_stop="84943" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.957" acc_prob="0.522">
            <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="84858" e_stop="84793" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="84792" i_stop="84421" i_length="372"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="84420" e_stop="84249" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88685" stop="88506"/>
              <exon start="87751" stop="87677"/>
              <exon start="87275" stop="87207"/>
              <exon start="86254" stop="86178"/>
              <exon start="86060" stop="85972"/>
              <exon start="85741" stop="85612"/>
              <exon start="85033" stop="84943"/>
              <exon start="84858" stop="84793"/>
              <exon start="84420" stop="84249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTCAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAG : ACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT : GCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT : GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGC : GCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG : TTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAG : ATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAG : AGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCG : GTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATCGGTCGTAGACTGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAGAAATGTGACTAAACACTTGTACATGAAAAACATGTGATTTT</gDNA_template>
            <first_frame> M  S  N  S  T  S  S  L  F  T  A  P  S  Q  F  L  V  Q  C  N  N  P  L  I  I  S  G  K  L  S  F  K  I  R  A  S  A  A  S  S  S  S  P  S  S  T  G  V  V  D  L  S  T  L  R  T  A  I  S  K  :  T  S  L  R  E  L  T  T  L  G  I  K  N  A  E  N  L  A  I  P  S  V  R  N  D  :  A  A  F  L  F  T  V  V  G  T  T  G  F  L  G  V  L  A  G  Q  L  P  G  :  D  W  G  F  F  V  P  Y  L  I  G  S  I  S  L  V  V  L  G  I  G  S  T  S  P  A :   L  L  Q  A  A  I  D  G  F  S  S  F  F  P  D  Y  Q  E  R  I  A  R  H  E  A  A  H  F  L   : V  S  Y  L  I  G  V  P  I  L  G  Y  S  L  D  I  G  K  E  H  V  N  L  I  D  E  R  L  E  K  L  I  Y  S  G  Q  L  D  S  K  E  L  D  R :   L  A  V  V  A  M  A  G  L  A  A  E  G  L  K  Y  D  K  V  V  G  Q  S  A  D  L  F  T  L  Q  :  R  F  L  N  R  S  K  P  S  L  S  K  D  Q  Q  Q  N  L  T  R  W  A  :  V  L  F  A  A  S  L  L  K  N  N  S  K  L  H  E  A  L  I  A  A  M  T  N  K  A  S  V  V  D  C  I  E  A  I  E  K  A  A  *  S  Y  S  R  N  V  T  K  H  L  Y  M  K  N  M  *  F  </first_frame>
            <second_frame>  C  Q  I  L  H  H  L  S  S  L  R  L  L  N  F  *  Y  N  V  I  I  H  *  L  F  L  E  N  *  A  S  K  F  E  L  Q  Q  L  L  L  L  L  L  H  Q  L  V  L  S  I  Y  P  L  S  E  P  P  F  L  R :   H  L  L  E  S  *  Q  L  S  E  *  R  T  Q  R  T  L  Q  S  Q  V  S  E  M  M :   Q  L  F  C  L  Q  W  *  A  Q  L  G  F  W  E  F  L  Q  G  N  F  L  V :   I  G  V  S  S  F  H  T  *  L  G  A  Y  L  *  *  F  W  E  S  E  V  L  P  Q   : R  S  F  R  P  P  L  M  D  F  H  P  F  F  L  I  T  R  R  E  S  P  D  M  K  Q  L  I  S  *  :  F  P  T  *  *  V  F  R  S  L  D  I  H  W  I  L  G  K  S  M  S  I  *  L  M  K  G  W  K  N  L  S  T  V  A  S  L  T  Q  K  N  S  T   : D  W  Q  W  *  R  W  P  G  *  Q  Q  K  G  *  S  M  I  K  L  S  V  N  Q  L  T  F  S  L  F  R :   D  F  *  T  G  A  S  R  R  L  A  K  T  S  S  R  T  L  Q  D  G  R :   S  Y  L  L  L  H  Y  *  K  I  I  A  S  F  M  K  P  *  *  R  Q  *  Q  T  R  H  R  S  *  T  A  *  K  Q  L  R  K  Q  L  D  L  T  P  E  M  *  L  N  T  C  T  *  K  T  C  D  F </second_frame>
            <third_frame>   V  K  F  Y  I  I  S  L  H  C  A  F  S  I  F  S  T  M  *  *  S  I  N  Y  F  W  K  I  E  L  Q  N  S  S  F  S  S  F  F  F  F  S  F  I  N  W  C  C  R  S  I  H  S  P  N  R  H  F  *   : D  I  S  *  R  A  D  N  S  R  N  K  E  R  R  E  P  C  N  P  K  C  Q  K  *   : C  S  F  S  V  Y  S  G  R  H  N  W  V  F  G  S  S  C  R  A  T  S  W   : *  L  G  F  L  R  S  I  L  D  W  E  H  I  F  S  S  F  G  N  R  K  Y  F  P  S  :  A  P  S  G  R  H  *  W  I  F  I  L  F  S  *  L  P  G  E  N  R  Q  T  *  S  S  S  F  L  S :   F  L  P  N  R  C  S  D  P  W  I  F  T  G  Y  W  E  R  A  C  Q  F  N  *  *  K  V  G  K  T  Y  L  Q  W  P  A  *  L  K  R  T  R  Q  :  I  G  S  G  S  D  G  R  A  S  S  R  R  A  K  V  *  *  S  C  R  S  I  S  *  P  F  H  S  S   : E  I  S  K  Q  E  Q  A  V  A  *  Q  R  P  A  A  E  P  Y  K  M  G   : G  L  I  C  C  F  T  T  E  K  *  *  Q  A  S  *  S  P  N  S  G  N  D  K  Q  G  I  G  R  R  L  H  R  S  N  *  E  S  S  L  I  L  L  Q  K  C  D  *  T  L  V  H  E  K  H  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88685" stop="88506"/>
                    <exon start="87751" stop="87677"/>
                    <exon start="87275" stop="87207"/>
                    <exon start="86254" stop="86178"/>
                    <exon start="86060" stop="85972"/>
                    <exon start="85741" stop="85612"/>
                    <exon start="85033" stop="84943"/>
                    <exon start="84858" stop="84793"/>
                    <exon start="84420" stop="84301"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>894</number_coding_nucleotides>
                  <number_encoded_amino_acids>298</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSNSTSSLFTAPSQFLVQCNNPLIISGKLSFKIRASAASSSSPSSTGVVDLSTLRTAISKTSLRELTTLGIKNAENLAIPSVRNDAAFLFTVVGTTGFLGVLAGQLPGDWGFFVPYLIGSISLVVLGIGSTSPALLQAAIDGFSSFFPDYQERIARHEAAHFLVSYLIGVPILGYSLDIGKEHVNLIDERLEKLIYSGQLDSKELDRLAVVAMAGLAAEGLKYDKVVGQSADLFTLQRFLNRSKPSLSKDQQQNLTRWAVLFAASLLKNNSKLHEALIAAMTNKASVVDCIEAIEKAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="88741" e_stop="88506"/>
            <exon e_start="87965" e_stop="87870"/>
            <exon e_start="87751" e_stop="87677"/>
            <exon e_start="87275" e_stop="87207"/>
            <exon e_start="86254" e_stop="86178"/>
            <exon e_start="86060" e_stop="85972"/>
            <exon e_start="85741" e_stop="85612"/>
            <exon e_start="85033" e_stop="84943"/>
            <exon e_start="84858" e_stop="84200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.971" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.522" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="88741" e_stop="88506" e_length="236"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88505" i_stop="87966" i_length="540"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87965" e_stop="87870" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.994">
            <gDNA_intron_boundary i_start="87869" i_stop="87752" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87751" e_stop="87677" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="87676" i_stop="87276" i_length="401"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87275" e_stop="87207" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="87206" i_stop="86255" i_length="952"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86254" e_stop="86178" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.916">
            <gDNA_intron_boundary i_start="86177" i_stop="86061" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="86060" e_stop="85972" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85971" i_stop="85742" i_length="230"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85741" e_stop="85612" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.980">
            <gDNA_intron_boundary i_start="85611" i_stop="85034" i_length="578"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="85033" e_stop="84943" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.957" acc_prob="0.522">
            <gDNA_intron_boundary i_start="84942" i_stop="84859" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="84858" e_stop="84200" e_length="659"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88741" stop="88506"/>
              <exon start="87965" stop="87870"/>
              <exon start="87751" stop="87677"/>
              <exon start="87275" stop="87207"/>
              <exon start="86254" stop="86178"/>
              <exon start="86060" stop="85972"/>
              <exon start="85741" stop="85612"/>
              <exon start="85033" stop="84943"/>
              <exon start="84858" stop="84200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTTTTAGTTATCCCACAAAATTCCCCCAATTTTTTTATTTTTAAGAAAAGAAAAATGTCAAATTCTACATCATCTCTCTTCACTGCGCCTTCTCAATTTTTAGTACAATGTAATAATCCATTAATTATTTCTGGAAAATTGAGCTTCAAAATTCGAGCTTCAGCAGCTTCTTCTTCTTCTCCTTCATCAACTGGTGTTGTCGATCTATCCACTCTCCGAACCGCCATTTCTAAG : AAAGATAGTAATGCCGTAAAAGAGGCGCTTGATCAGCTAGTTGAAATCGGTTGGTCCAAAAAATGGGGTTCTCAACCATATGTGTCACGTCGAACG : ACATCTCTTAGAGAGCTGACAACTCTCGGAATAAAGAACGCAGAGAACCTTGCAATCCCAAGTGTCAGAAATGAT : GCAGCTTTTCTGTTTACAGTGGTAGGCACAACTGGGTTTTTGGGAGTTCTTGCAGGGCAACTTCCTGGT : GATTGGGGTTTCTTCGTTCCATACTTGATTGGGAGCATATCTTTAGTAGTTTTGGGAATCGGAAGTACTTCCCCAGC : GCTCCTTCAGGCCGCCATTGATGGATTTTCATCCTTTTTTCCTGATTACCAGGAGAGAATCGCCAGACATGAAGCAGCTCATTTCTTAG : TTTCCTACCTAATAGGTGTTCCGATCCTTGGATATTCACTGGATATTGGGAAAGAGCATGTCAATTTAATTGATGAAAGGTTGGAAAAACTTATCTACAGTGGCCAGCTTGACTCAAAAGAACTCGACAG : ATTGGCAGTGGTAGCGATGGCCGGGCTAGCAGCAGAAGGGCTAAAGTATGATAAAGTTGTCGGTCAATCAGCTGACCTTTTCACTCTTCAG : AGATTTCTAAACAGGAGCAAGCCGTCGCTTAGCAAAGACCAGCAGCAGAACCTTACAAGATGGGCGGTGAGTCTAAAACCGAACACATACTGTGATAAATATACACAAACTATTGAAATATATAACATAATTAAGTCAATTAAAAGTGTCTTAGTCTCTAGTAGTTTAAGCTTTTATATGAAATCATCACACACTTCAACATGGTATCAGAGCACATCACAAGAGGTGGTGAGACATAATATAACTACATAATTAAAAGTAAAAGTATGTGATGAGATGATCACATATTTCTAACATACAAACATATACAAAATTCAAGATGCATACCACACGTAGATTGTTTGCTTTTGCCACTTCTAAGCTAAACGAAGACATTGATTATAATGTTGCAAGTAAATCCAAGCAAGACCATTAGTTTGTCTGATTCAATTTTTGCAGGTCTTATTTGCTGCTTCACTACTGAAAAATAATAGCAAGCTTCATGAAGCCCTAATAGCGGCAATGACAAACAAGGCATCGGTCGTAGACTGCATAGAAGCAATTGAGAAAGCAGCTTGATCTTACTCCAGAAATGTGACTAAACACTTGTACATGAAAAACATGTGATTTTTTCTCATAAATTTGAAAATATATCGAAGAACAGAAAGAAGTATATATAT</gDNA_template>
            <first_frame> S  F  *  L  S  H  K  I  P  P  I  F  L  F  L  R  K  E  K  C  Q  I  L  H  H  L  S  S  L  R  L  L  N  F  *  Y  N  V  I  I  H  *  L  F  L  E  N  *  A  S  K  F  E  L  Q  Q  L  L  L  L  L  L  H  Q  L  V  L  S  I  Y  P  L  S  E  P  P  F  L  R :   K  I  V  M  P  *  K  R  R  L  I  S  *  L  K  S  V  G  P  K  N  G  V  L  N  H  M  C  H  V  E  R :   H  L  L  E  S  *  Q  L  S  E  *  R  T  Q  R  T  L  Q  S  Q  V  S  E  M  M :   Q  L  F  C  L  Q  W  *  A  Q  L  G  F  W  E  F  L  Q  G  N  F  L  V :   I  G  V  S  S  F  H  T  *  L  G  A  Y  L  *  *  F  W  E  S  E  V  L  P  Q   : R  S  F  R  P  P  L  M  D  F  H  P  F  F  L  I  T  R  R  E  S  P  D  M  K  Q  L  I  S  *  :  F  P  T  *  *  V  F  R  S  L  D  I  H  W  I  L  G  K  S  M  S  I  *  L  M  K  G  W  K  N  L  S  T  V  A  S  L  T  Q  K  N  S  T   : D  W  Q  W  *  R  W  P  G  *  Q  Q  K  G  *  S  M  I  K  L  S  V  N  Q  L  T  F  S  L  F  R :   D  F  *  T  G  A  S  R  R  L  A  K  T  S  S  R  T  L  Q  D  G  R  *  V  *  N  R  T  H  T  V  I  N  I  H  K  L  L  K  Y  I  T  *  L  S  Q  L  K  V  S  *  S  L  V  V  *  A  F  I  *  N  H  H  T  L  Q  H  G  I  R  A  H  H  K  R  W  *  D  I  I  *  L  H  N  *  K  *  K  Y  V  M  R  *  S  H  I  S  N  I  Q  T  Y  T  K  F  K  M  H  T  T  R  R  L  F  A  F  A  T  S  K  L  N  E  D  I  D  Y  N  V  A  S  K  S  K  Q  D  H  *  F  V  *  F  N  F  C  R  S  Y  L  L  L  H  Y  *  K  I  I  A  S  F  M  K  P  *  *  R  Q  *  Q  T  R  H  R  S  *  T  A  *  K  Q  L  R  K  Q  L  D  L  T  P  E  M  *  L  N  T  C  T  *  K  T  C  D  F  F  S  *  I  *  K  Y  I  E  E  Q  K  E  V  Y  I  </first_frame>
            <second_frame>  A  F  S  Y  P  T  K  F  P  Q  F  F  Y  F  *  E  K  K  N  V  K  F  Y  I  I  S  L  H  C  A  F  S  I  F  S  T  M  *  *  S  I  N  Y  F  W  K  I  E  L  Q  N  S  S  F  S  S  F  F  F  F  S  F  I  N  W  C  C  R  S  I  H  S  P  N  R  H  F  *   : E  R  *  *  C  R  K  R  G  A  *  S  A  S  *  N  R  L  V  Q  K  M  G  F  S  T  I  C  V  T  S  N   : D  I  S  *  R  A  D  N  S  R  N  K  E  R  R  E  P  C  N  P  K  C  Q  K  *   : C  S  F  S  V  Y  S  G  R  H  N  W  V  F  G  S  S  C  R  A  T  S  W   : *  L  G  F  L  R  S  I  L  D  W  E  H  I  F  S  S  F  G  N  R  K  Y  F  P  S  :  A  P  S  G  R  H  *  W  I  F  I  L  F  S  *  L  P  G  E  N  R  Q  T  *  S  S  S  F  L  S :   F  L  P  N  R  C  S  D  P  W  I  F  T  G  Y  W  E  R  A  C  Q  F  N  *  *  K  V  G  K  T  Y  L  Q  W  P  A  *  L  K  R  T  R  Q  :  I  G  S  G  S  D  G  R  A  S  S  R  R  A  K  V  *  *  S  C  R  S  I  S  *  P  F  H  S  S   : E  I  S  K  Q  E  Q  A  V  A  *  Q  R  P  A  A  E  P  Y  K  M  G  G  E  S  K  T  E  H  I  L  *  *  I  Y  T  N  Y  *  N  I  *  H  N  *  V  N  *  K  C  L  S  L  *  *  F  K  L  L  Y  E  I  I  T  H  F  N  M  V  S  E  H  I  T  R  G  G  E  T  *  Y  N  Y  I  I  K  S  K  S  M  *  *  D  D  H  I  F  L  T  Y  K  H  I  Q  N  S  R  C  I  P  H  V  D  C  L  L  L  P  L  L  S  *  T  K  T  L  I  I  M  L  Q  V  N  P  S  K  T  I  S  L  S  D  S  I  F  A  G  L  I  C  C  F  T  T  E  K  *  *  Q  A  S  *  S  P  N  S  G  N  D  K  Q  G  I  G  R  R  L  H  R  S  N  *  E  S  S  L  I  L  L  Q  K  C  D  *  T  L  V  H  E  K  H  V  I  F  S  H  K  F  E  N  I  S  K  N  R  K  K  Y  I  Y </second_frame>
            <third_frame>   L  L  V  I  P  Q  N  S  P  N  F  F  I  F  K  K  R  K  M  S  N  S  T  S  S  L  F  T  A  P  S  Q  F  L  V  Q  C  N  N  P  L  I  I  S  G  K  L  S  F  K  I  R  A  S  A  A  S  S  S  S  P  S  S  T  G  V  V  D  L  S  T  L  R  T  A  I  S  K  :  K  D  S  N  A  V  K  E  A  L  D  Q  L  V  E  I  G  W  S  K  K  W  G  S  Q  P  Y  V  S  R  R  T  :  T  S  L  R  E  L  T  T  L  G  I  K  N  A  E  N  L  A  I  P  S  V  R  N  D  :  A  A  F  L  F  T  V  V  G  T  T  G  F  L  G  V  L  A  G  Q  L  P  G  :  D  W  G  F  F  V  P  Y  L  I  G  S  I  S  L  V  V  L  G  I  G  S  T  S  P  A :   L  L  Q  A  A  I  D  G  F  S  S  F  F  P  D  Y  Q  E  R  I  A  R  H  E  A  A  H  F  L   : V  S  Y  L  I  G  V  P  I  L  G  Y  S  L  D  I  G  K  E  H  V  N  L  I  D  E  R  L  E  K  L  I  Y  S  G  Q  L  D  S  K  E  L  D  R :   L  A  V  V  A  M  A  G  L  A  A  E  G  L  K  Y  D  K  V  V  G  Q  S  A  D  L  F  T  L  Q  :  R  F  L  N  R  S  K  P  S  L  S  K  D  Q  Q  Q  N  L  T  R  W  A  V  S  L  K  P  N  T  Y  C  D  K  Y  T  Q  T  I  E  I  Y  N  I  I  K  S  I  K  S  V  L  V  S  S  S  L  S  F  Y  M  K  S  S  H  T  S  T  W  Y  Q  S  T  S  Q  E  V  V  R  H  N  I  T  T  *  L  K  V  K  V  C  D  E  M  I  T  Y  F  *  H  T  N  I  Y  K  I  Q  D  A  Y  H  T  *  I  V  C  F  C  H  F  *  A  K  R  R  H  *  L  *  C  C  K  *  I  Q  A  R  P  L  V  C  L  I  Q  F  L  Q  V  L  F  A  A  S  L  L  K  N  N  S  K  L  H  E  A  L  I  A  A  M  T  N  K  A  S  V  V  D  C  I  E  A  I  E  K  A  A  *  S  Y  S  R  N  V  T  K  H  L  Y  M  K  N  M  *  F  F  L  I  N  L  K  I  Y  R  R  T  E  R  S  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88739" stop="88506"/>
                    <exon start="87965" stop="87870"/>
                    <exon start="87751" stop="87677"/>
                    <exon start="87275" stop="87207"/>
                    <exon start="86254" stop="86178"/>
                    <exon start="86060" stop="85972"/>
                    <exon start="85741" stop="85612"/>
                    <exon start="85033" stop="84943"/>
                    <exon start="84858" stop="84607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1110</number_coding_nucleotides>
                  <number_encoded_amino_acids>370</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLVIPQNSPNFFIFKKRKMSNSTSSLFTAPSQFLVQCNNPLIISGKLSFKIRASAASSSSPSSTGVVDLSTLRTAISKKDSNAVKEALDQLVEIGWSKKWGSQPYVSRRTTSLRELTTLGIKNAENLAIPSVRNDAAFLFTVVGTTGFLGVLAGQLPGDWGFFVPYLIGSISLVVLGIGSTSPALLQAAIDGFSSFFPDYQERIARHEAAHFLVSYLIGVPILGYSLDIGKEHVNLIDERLEKLIYSGQLDSKELDRLAVVAMAGLAAEGLKYDKVVGQSADLFTLQRFLNRSKPSLSKDQQQNLTRWAVSLKPNTYCDKYTQTIEIYNIIKSIKSVLVSSSLSFYMKSSHTSTWYQSTSQEVVRHNITT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="92979" PGL_stop="90886"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92979" e_stop="92918"/>
            <exon e_start="92093" e_stop="91869"/>
            <exon e_start="91094" e_stop="90886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.796" acc_prob="0.995" e_score="0.984"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="92979" e_stop="92918" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.796" acc_prob="0.995">
            <gDNA_intron_boundary i_start="92917" i_stop="92094" i_length="824"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92093" e_stop="91869" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="91868" i_stop="91095" i_length="774"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91094" e_stop="90886" e_length="209"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92979" stop="92918"/>
              <exon start="92093" stop="91869"/>
              <exon start="91094" stop="90886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565399" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATAGTTTCTTTATATTTATTTTCCTTGTTCATACTCTTACAATGGAATATCACAAAGAG : AAGAAGAATGGACCATGGCTATCTGTGCCACAATTTGGACATTGGGATCAAAAGGGTGTCTACCCTGACTACTCAATGGATTTTTCTAAAATAAGAGAAAATAGGAAACAAAACAAAAAGGACTTATCAAGAGCCAGTTTTGGAAATGAGAATGACCTCATTTTCTCTACCAAAAGTGATGCAAATGAGAATGATCATCATTACCATCAAAACCAATCTACAACT : AGGATGAGAAGGATCTTTAGATATTTCAATTGCTGTGGAAAAGCTTGAAGTTCATGGAATTGATTTTTCATCCAATTTCCTTGTAATGAAAATATAGTAATTTGTGATTTCTACCTAAGTTTTGAGTGACTTTTATAAGAAATAGGAAAATGTTATAAATTTTGGAAATTGTGGTGATTGTTTCTTAACATCCTTTGCTTCTCTTGGGT</gDNA_template>
            <first_frame> K  I  V  S  L  Y  L  F  S  L  F  I  L  L  Q  W  N  I  T  K  R :   R  R  M  D  H  G  Y  L  C  H  N  L  D  I  G  I  K  R  V  S  T  L  T  T  Q  W  I  F  L  K  *  E  K  I  G  N  K  T  K  R  T  Y  Q  E  P  V  L  E  M  R  M  T  S  F  S  L  P  K  V  M  Q  M  R  M  I  I  I  T  I  K  T  N  L  Q  L :   G  *  E  G  S  L  D  I  S  I  A  V  E  K  L  E  V  H  G  I  D  F  S  S  N  F  L  V  M  K  I  *  *  F  V  I  S  T  *  V  L  S  D  F  Y  K  K  *  E  N  V  I  N  F  G  N  C  G  D  C  F  L  T  S  F  A  S  L  G  </first_frame>
            <second_frame>  K  *  F  L  Y  I  Y  F  P  C  S  Y  S  Y  N  G  I  S  Q  R   : E  E  E  W  T  M  A  I  C  A  T  I  W  T  L  G  S  K  G  C  L  P  *  L  L  N  G  F  F  *  N  K  R  K  *  E  T  K  Q  K  G  L  I  K  S  Q  F  W  K  *  E  *  P  H  F  L  Y  Q  K  *  C  K  *  E  *  S  S  L  P  S  K  P  I  Y  N   : *  D  E  K  D  L  *  I  F  Q  L  L  W  K  S  L  K  F  M  E  L  I  F  H  P  I  S  L  *  *  K  Y  S  N  L  *  F  L  P  K  F  *  V  T  F  I  R  N  R  K  M  L  *  I  L  E  I  V  V  I  V  S  *  H  P  L  L  L  L  G </second_frame>
            <third_frame>   N  S  F  F  I  F  I  F  L  V  H  T  L  T  M  E  Y  H  K  E  :  K  K  N  G  P  W  L  S  V  P  Q  F  G  H  W  D  Q  K  G  V  Y  P  D  Y  S  M  D  F  S  K  I  R  E  N  R  K  Q  N  K  K  D  L  S  R  A  S  F  G  N  E  N  D  L  I  F  S  T  K  S  D  A  N  E  N  D  H  H  Y  H  Q  N  Q  S  T  T  :  R  M  R  R  I  F  R  Y  F  N  C  C  G  K  A  *  S  S  W  N  *  F  F  I  Q  F  P  C  N  E  N  I  V  I  C  D  F  Y  L  S  F  E  *  L  L  *  E  I  G  K  C  Y  K  F  W  K  L  W  *  L  F  L  N  I  L  C  F  S  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92977" stop="92918"/>
                    <exon start="92093" stop="91869"/>
                    <exon start="91094" stop="91047"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSFFIFIFLVHTLTMEYHKEKKNGPWLSVPQFGHWDQKGVYPDYSMDFSKIRENRKQNKKDLSRASFGNENDLIFSTKSDANENDHHYHQNQSTTRMRRIFRYFNCCGKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="105438" PGL_stop="105099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105438" e_stop="105099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="105438" e_stop="105099" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105438" stop="105099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAATAATATCAATTGCTCCTCTTGGCCCGTGGTTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTTATTTTCCCATTTTATTTTCATTACTTTTACAATATTTACTTTTGTGCTTGTCCGCGTTTTCCCAACA</gDNA_template>
            <first_frame> E  K  P  F  *  E  Q  S  E  V  F  H  I  P  *  T  I  *  E  N  S  L  *  R  K  I  E  C  E  R  Y  L  V  R  R  K  P  K  E  C  C  S  F  *  V  C  S  S  H  F  E  C  C  I  R  D  Y  T  V  *  N  S  L  L  *  *  Y  Q  L  L  L  L  A  R  G  F  F  P  Y  S  E  G  F  P  R  K  I  L  G  V  V  I  F  P  F  Y  F  H  Y  F  Y  N  I  Y  F  C  A  C  P  R  F  P  N  </first_frame>
            <second_frame>  K  N  H  F  E  S  K  V  R  Y  S  I  F  H  R  L  Y  K  K  I  V  C  E  E  K  *  S  V  S  D  I  *  *  D  G  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  V  V  F  V  T  T  Q  C  K  I  P  Y  Y  N  N  I  N  C  S  S  W  P  V  V  F  S  L  I  Q  K  G  F  H  V  K  F  L  V  S  L  F  S  H  F  I  F  I  T  F  T  I  F  T  F  V  L  V  R  V  F  P  T </second_frame>
            <third_frame>   K  T  I  L  R  A  K  *  G  I  P  Y  S  I  D  Y  I  R  K  *  S  V  K  K  N  R  V  *  A  I  F  S  K  T  E  T  K  R  V  L  F  L  L  S  V  *  *  S  L  *  V  L  Y  S  *  L  H  S  V  K  F  L  T  I  I  I  S  I  A  P  L  G  P  W  F  F  P  L  F  R  R  V  S  T  *  N  S  W  C  R  Y  F  P  I  L  F  S  L  L  L  Q  Y  L  L  L  C  L  S  A  F  S  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0039K13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105338" stop="105099"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGNQKSVVPFECVVVTLSVVFVTTQCKIPYYNNINCSSWPVVFSLIQKGFHVKFLVSLFSHFIFITFTIFTFVLVRVFPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 46 chains have been computed
$ 
$ memory statistics:
$ 39440 bytes spliced alignments in total
$ 14 spliced alignments have been stored
$ 2817 bytes was the average size of a spliced alignment
$ 17272 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1727 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 51 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:30:13
-->
