<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:35:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603972" ref_strand="+" ref_description="SGN-U603972 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>attcaaaccctcattcttttagcctaattagtatataattaagaataaaagatgacaataatagcccactaattaacttaaggttaactcttttatcccccaagaaattgagttattaatatagacccacgaaatatataattatagcaggaataggccaaaacgcccctttaaaacttaaccagaattccaacttcaactgggattacgcaacctgtgacatcccgtcgcgcttgcgacggtccgtcatgcagggtcgtcagaaacttgatttcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="-" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="11459" stop="10590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11159" g_stop="10907" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="-" ref_id="SGN-U603972" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11159" e_stop="10907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACGAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGAATTTGAGTTATTAATATCAACCCACAAAATATATAATTATAGCAGGAATAGTCCAAAACGCCCCTTTAAAACTTAACCAGAAATCCGACTCCAACTGGGATTATGCAAACTGTGACGGGCCGTCGCGCTTGCGACGGTCCGTCCTGCT</genome_strand>
        <mrna_strand>ATTCAAACCCTCATTCTTTTAGCCTAATTAGTATATAATTAAGAATAAAAGATGACAATAATAGCCCACTAATTAACTTAAGGTTAACTCTTTTATCCCCCAAGAAATTGAGTTATTAATATAGACCCACGAAATATATAATTATAGCAGGAATAGGCCAAAACGCCCCTTTAAAACTTAACCAGAATTCCAACTTCAACTGGGATTACGCAACCTGTGACATCCCGTCGCGCTTGCGACGGTCCGTCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593741" ref_strand="+" ref_description="SGN-U593741 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cagccctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="+" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="11137" stop="12336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11436" g_stop="11549" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11550" i_stop="11628" i_length="79">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11629" g_stop="12036" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="519" r_length="405" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="+" ref_id="SGN-U593741" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11436" e_stop="11549"/>
          <exon e_start="11629" e_stop="12036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGACTCGATGAACGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGAGGATCGGAGTGTCATGTTCCGACACCAGGATAGAATATGGATCGCGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGGTGTCACGTTCCGACACTAGGATAGAATAAGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACATGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATTCAATCTAATGAACTGAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTCATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTAGGATATTGCTTAATACATACT</genome_strand>
        <mrna_strand>CAGCCCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATG...............................................................................GATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578865" ref_strand="+" ref_description="SGN-U578865 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=8e-164) Polyprotein,; (*SWP) sp|Q99315|YG31B_YEAST (e_value=2e-17) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>aagaacagcgacaaggggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcgcctagcccatctgatactagggcagtgactcctccaccgactgaggaagtaataagagaaggggaggatggggaaactgaacaagtgcagaatgagggattgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttatctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatcggaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttgggcctcattctctagcttgtttatggagaagtatatcccccgaactttgagggataggaaaagggatgagttcttgagcctagagcaaggtaggatgtcggtcaatgcatatgaggctaagtttcgtgcattatcccggtatgccacccaactgtgtttcagtccacaagagcgaattcgccggtttgtgaaggggttgaggtcagaattgcagatttcggccttacaaatagcggcaacgacaaaatccttccaagaggtggtagactttgtgatagaagtggaaggagtgaagccagacgacttcatcccgacatcgacatcaaaaaggtttcgaaagggaggtgagtttaatggtgcttacactagaggacagggttagggaagttactcagtccgaccaattcagtcttcactacagactgtagttgggggtccacctccgaccggtcaacacttctctgagagacctatgcatgaacccagagagtgctatggatgtggggagattggacatattaagagatattgtccaaaacagagttacagacctccaaaggttagaggtagaggtggtcatggcagaggccgttattctggaggacgtggcggtcgaggaaatggtggtcaccaaaacggccgaggtgatgggaaaactggagccactacatcacaacaaggtaggggcaacagacagaagaacgatagggcccattgttacgctttccctgggcggtctgaagcggaggaatctgatgctgtcatcacaggtaatcttttggtttgtgattgcatggcttctgtattgtttgatcctggatccacgttttcttatgtatcttcctcatttgctaacggtctaaatttacattgtgaattacttgatatgcctattcgtgtttctactccggtgggtgagtctgtggtagttgaaaaggtatataggtcttgtttggtgaactttgtggggagcaacacttatgtagatttggttatcttagaaatggttgattttgatgtaattctgggtatgacttggctttctccgcaatttgcgatcttggattgtaatgctaaaacggtgacattagccaagcctgggacagatccgttagtgtgggagggtgactacacttccaatccggtgcgcatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggatgacactacccaagtaccttcgattgagtcggtttctatagtctgtgagtttttggatgtgttccctgcagatcttcctggtatgccaccagatagggatattgacttctgtatcgatcttgaaccgggcacacgccccatttctatacccccttatagaatggctcccgtagagttaagagagttaaaggcccaacttcaagagttgttgagcaaaggtttcattagaccaagtgcatctccttggggtgctccgattttgtttgtgaagaagaaggatgggagttttagaatgtgcatagactacagacaactgaacaaggtaactattaagaacaagtatcctcttcctcgcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="+" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="12498" stop="15282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12798" g_stop="14983" g_length="2186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2192" r_length="2192" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="+" ref_id="SGN-U578865" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>2186</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12798" e_stop="14983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAACGGCAA-GGACCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTAGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCATCATTAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGATACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCATGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTT-GGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGGTTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTAGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACTAACGATAGGGCCCATTGTTACGCTTTCCCTGCGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGA----GGATCCACATTTTCTAATGTATCTTCCTCATTTGCTAATGGTCTAACTTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGAAAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTACTTTCTTCGTGCTAAGAAAAAGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTTCGATTGAGTCGGTTTCAGTAATCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAAATTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCACTGATG</genome_strand>
        <mrna_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAAATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCATCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTAGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAAGGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGCGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACAGACAGAAGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGAATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAACGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGCATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCTATAGTCTGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGTAGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGTTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTAGAATGTGCATAGACTACAGACAACTGAACAAGGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581303" ref_strand="+" ref_description="SGN-U581303 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-69) Polyprotein,; ">
      <seq>cacgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtctgggacaatttctcctaatatgtccaatctccccacatccataacattctctggagtcaatcataggcccctcggagaagtgttgaccggtctgaggtggtcccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctccctttcgaagcctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaagtccgggggatatacttctccataaacaaactagagaatgaggcccaagtcataggtggtgcctctattggttgacactcgatatgtgaccgccaccacattttggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcctgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcactgccctagtatcagatgggctaggtgctcgtcctcttcctctagaggacgtcctcccacgacctctaccacggccccttgccgctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="-" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="14599" stop="12499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14299" g_stop="12798" g_length="1502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1508" r_length="1508" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="-" ref_id="SGN-U581303" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>1502</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14299" e_stop="12798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATTAGAAAATGTGGATCC----TCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCGCAGGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCTAGTTTTCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAACCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGG-ACCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCATGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTATCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTAATGATGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCTAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGCGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGG-TCCTTGCCGTTGTTCTT</genome_strand>
        <mrna_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577296" ref_strand="+" ref_description="SGN-U577296 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-54) Polyprotein,; ">
      <seq>aagaacaacggtaagaggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcagtgactcctccaccgactgaggagataataagagaaggggaggatggggaaactgaacaagtgcaaaacgaggaaatgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttgtctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccacatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcagaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtcaaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttggacctcattctctagcttttttatggagaagtatatcccccggactttgagggataggaaaagggatgagttcctgagcctagagcaaggtaggatgtcggttaatgcttatgaagctaagttccgtgcactatccagatatgccacccaactatgtttcagtccacaagagcggattcgccgttttgtgaaggggttgaggtcagagttgtggatttcagccttatagatagcggctactgcaaaatccttccaagaggtggtatatttcgtggtagaggtggaaggagtgaagccagatgacttcaccacgacatcgacatcaaagaggtttcgtaagggaggtgagtttaagggttcttactctagaggacaaggttccggaggttactcagttcgaccatttcaatcttcactacagaccgtagttgggggtccacctcagaccggtcaacacttctccgagagacctatgcttgactccagagagtgttatgggtgtggggagactgggcatattaagagaaattgtccaaaacagagttatagacccccaatggctagaggtagaggtggtcatggtagaggccgtcattctggaggccgtggtggtcgacccacgggtggtcaccaagacggccgaggtgatgggcaaactggagccactacatcacaacatggtaggggcaacagacagacgaacgatatggcccattgttacgctttccctgggcggtttgaagcggaggcatctgatgctgtcatcacaggtaatcttctggtttgtgattgcacggcttctgtattttttgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="+" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="12498" stop="14517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12798" g_stop="14221" g_length="1424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1426" r_length="1426" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="+" ref_id="SGN-U577296" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>1424</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12798" e_stop="14221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAACGGCAAG-GACCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTAGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCATCATTAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGATACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCATGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTT-GGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGGTTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTAGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACTAACGATAGGGCCCATTGTTACGCTTTCCCTGCGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGAGGAT</genome_strand>
        <mrna_strand>AAGAACAACGGTAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGATAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAACGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCACATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCAGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGACCTCATTCTCTAGCTTTTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAAGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTATAGATAGCGGCTACTGCAAAATCCTTCCAAGAGGTGGTATATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAGAGGTTTCGTAAGGGAGGTGAGTTTAAGGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCATTTCAATCTTCACTACAGACCGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAAGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGCCGTGGTGGTCGACCCACGGGTGGTCACCAAGACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTTTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCACGGCTTCTGTATTTTTTGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590682" ref_strand="+" ref_description="SGN-U590682 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-28) Polyprotein,; ">
      <seq>ccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcggtgactcctccacctactgaagaagtaataagagaaggggaagatggggagaatgaacaagtgcaaaatgaggaattgccaccccagcctaccccagagatgataaatcaggtgctagcttatctgagtaggttgtctaatcaaggtcaagcacctccagtgtcttctgcaccaacacctccggtttcagaggtacaacatgcagccactatggctcctcgtatggatgcctcattagatataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggttcggtgttgagttcgtgagttatcaatttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcctcattttctagtttgnttatggagaagtatatcccccggactttgaggganaggaaaagggatgagtttttgagcctagagcaaggtannatgtcggtcaatgcatangangctaagtttcgtgcactatccnnatntgccactcaactttgtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="+" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="12515" stop="13841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12815" g_stop="13567" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="+" ref_id="SGN-U590682" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12815" e_stop="13567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTAGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCATCATTAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGATACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCATGCATTATCCCGGTATGCCACCCAACTGTGTTTCAG</genome_strand>
        <mrna_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCTACTGAAGAAGTAATAAGAGAAGGGGAAGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTAGCTTATCTGAGTAGGTTGTCTAATCAAGGTCAAGCACCTCCAGTGTCTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTTTCTAGTTTGNTTATGGAGAAGTATATCCCCCGGACTTTGAGGGANAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTANNATGTCGGTCAATGCATANGANGCTAAGTTTCGTGCACTATCCNNATNTGCCACTCAACTTTGTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="+" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="12528" stop="15673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12827" g_stop="13699" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13700" i_stop="14809" i_length="1110">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14810" g_stop="15373" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1436" r_length="563" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="+" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12827" e_stop="13699"/>
          <exon e_start="14810" e_stop="15373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTAGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCATCATTAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGATACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCATGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGGTTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTAGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACTAACGATAGGGCCCATTGTTACGCTTTCCCTGCGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGAGGATCCACATTTTCTAATGTATCTTCCTCATTTGCTAATGGTCTAACTTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGAAAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTACTTTCTTCGTGCTAAGAAAAAGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTTCGATTGAGTCGGTTTCAGTAATCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAAATTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCACTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATTTGGACCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590648" ref_strand="+" ref_description="SGN-U590648 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-17) Polyprotein,; ">
      <seq>gcacctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="+" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="12561" stop="13716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12861" g_stop="13416" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="+" ref_id="SGN-U590648" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12861" e_stop="13416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTAGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCATCATTAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGATACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>GCACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592109" ref_strand="-" ref_description="SGN-U592109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=5e-59) Putative; ">
      <seq>ggaaaagggatgagttcttgancctatagcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="+" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="13162" stop="30702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13462" g_stop="13662" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13663" i_stop="14401" i_length="739">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14402" g_stop="14930" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="723" r_length="522" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="+" ref_id="SGN-U592109" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13462" e_stop="13662"/>
          <exon e_start="14402" e_stop="14930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCATGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGGTTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTAGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACTAACGATAGGGCCCATTGTTACGCTTTCCCTGCGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGAGGATCCACATTTTCTAATGTATCTTCCTCATTTGCTAATGGTCTAACTTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGAAAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTACTTTCTTCGTGCTAAGAAAAAGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTTCGATTGAGTCGGTTTCAGTAATCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAAATTTCGAATGTGTATAGACTACAG</genome_strand>
        <mrna_strand>GGAAAAGGGATGAGTTCTTGANCCTATAGCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="-" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="15806" stop="14390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15502" g_stop="14690" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="-" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15502" e_stop="14690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAGTGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAATTTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCGAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTG</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="-" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="17067" stop="15975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16767" g_stop="16275" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="-" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16767" e_stop="16275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAATCGAACGATTTCTGAGATATAGATCTTGGCTAACTTCTCGGCATTGTAAGTCACCTTAACCGGAATAAAATGAACAGATTTAGTTAACCTATGAACAATCACCCAAATGGAGTCATACTTACCCATTGTCCTTGGAAGACCAACCACAAAGTCCATTGCAATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCTGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAGAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGGTGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599718" ref_strand="+" ref_description="SGN-U599718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205427|gb|ABI34389.1| (e_value=5e-23) Polyprotein,; ">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="-" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="17282" stop="16505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16982" g_stop="16806" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="-" ref_id="SGN-U599718" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16982" e_stop="16806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAACGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602735" ref_strand="+" ref_description="SGN-U602735 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147819178|emb|CAN71462.1| (e_value=1e-60) hypothetical; (*ATH) AT5G13230.1 (e_value=8e-61) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr5:4222517-4224985 FORWARD | Aliases: T31B5.50, T31B5_50; (*SWP) sp|Q9LNU6|PPR53_ARATH (e_value=1e-40) Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21; ">
      <seq>aattgaaatgtcatggtgtctttatttgatttaatagtttgtcacatcatgtgcatgtgcattatacacactctcctcttttgatcaagtgttaataggaaataaggttggttgaagtgtctaattaaaataggcatacaactttaaatagttgtggatgctttaagccttcattttatcagcatcagtccttaagaggccaaaacaggcaagtttcatttagatggatacatataagcctaggagctgaggtatattaccagtaatcaccacatgaacaagctccactttggaagtggtgaaacctatttatatctcttataacaatttctcgctgcacaagagttgatataaatttgattgctgcatgacagtccaaacatattcgtagatttttaataatccgaatcgggcttccaggcggcattcttactaaagcaaaggctaaagctaatctctcactatgtaaccataggaggcgtatcttttcatcatcgtccacatcaagtagaataacatcagaattaggaacatagcctccccccttacttttcaagttgagccattccaacattccgtgtataagtttgatatcaggatgtgaagcatcaccaacagagaaataatgaacactgccctggttttcaacccaactaagtcctggttccttctttagtcgttttttcttcatagttttccggacaaaagctacattattcccaccttttcgaagtggcatacatatttgataacaacacatacgttgtttcatcttgtggttccaattcaagcacacgctgagcagctgttttccaagatcaacttcattatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="+" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="22382" stop="23813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22682" g_stop="23513" g_length="832"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="833" r_length="833" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="+" ref_id="SGN-U602735" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22682" e_stop="23513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAAATGTCAT-GTGTCTTTATTTGATTTAATAGTTTGTCACATCATGTGCATGTGCATTATACACACT-TCCTCTTTTGATCAAGTGTTAATAGGAAATAAGGTTGGTTGAAGTGTCTAATTAAAATAGGCATACAACTTTAAATAGTTGTGGATGCTTTAAGCCTTCATTTTATCAGCATCAGTCCTTAAGAGGCCAAAACAGGCAAGTTTCATTTAGATGGATACATAGAAAGCCTAGGAGCTGAGGTATATTACCAGTAATCACCACATGAACAAGCTCCACTTTGGAAGTGGTGAAACCTATTTATATCTCTTATAACAATTTCTCGCTGCACAAGAGTTGATATAAATTTGATTGCTGCATGACAGTCCAAACATATTCGTAGATTTTTAATAATCCGAATTGGGCTTCCAGGCGGCATTCTTACTAAAGCAAAGGCTAAAGCTAATCTCTCACTATGTAACCATAGGAGGCGTATCTTTTCATCATCGTCCACATCAAGTAGAATAACATCAGAATTAGGAACATAGCCTCCCCCCTTACTTTTCAAGTTGAGCCATTCCAACATTCCGTGTATAAGTTTGATATCAGGATGTGAAGCATCACCAACAGAGAAATAATGAACACTGCCCTGGTTTTCAACCCAACTAAGTCCTGGTTCCTTCTTTAGTCGTTTTTTCTTCATAGTTTTCCGGACAAAAGCTACATTATT-CCACCTTTTCGAAGTGGCATACATATTTGATAACAACACATACGTTGTTTCATCTTGTGGTTCCAATTCAAGCACACACTGAGCAGCTGTTTTCCCAAGATCAACTTCATTATGA</genome_strand>
        <mrna_strand>AATTGAAATGTCATGGTGTCTTTATTTGATTTAATAGTTTGTCACATCATGTGCATGTGCATTATACACACTCTCCTCTTTTGATCAAGTGTTAATAGGAAATAAGGTTGGTTGAAGTGTCTAATTAAAATAGGCATACAACTTTAAATAGTTGTGGATGCTTTAAGCCTTCATTTTATCAGCATCAGTCCTTAAGAGGCCAAAACAGGCAAGTTTCATTTAGATGGATACATA-TAAGCCTAGGAGCTGAGGTATATTACCAGTAATCACCACATGAACAAGCTCCACTTTGGAAGTGGTGAAACCTATTTATATCTCTTATAACAATTTCTCGCTGCACAAGAGTTGATATAAATTTGATTGCTGCATGACAGTCCAAACATATTCGTAGATTTTTAATAATCCGAATCGGGCTTCCAGGCGGCATTCTTACTAAAGCAAAGGCTAAAGCTAATCTCTCACTATGTAACCATAGGAGGCGTATCTTTTCATCATCGTCCACATCAAGTAGAATAACATCAGAATTAGGAACATAGCCTCCCCCCTTACTTTTCAAGTTGAGCCATTCCAACATTCCGTGTATAAGTTTGATATCAGGATGTGAAGCATCACCAACAGAGAAATAATGAACACTGCCCTGGTTTTCAACCCAACTAAGTCCTGGTTCCTTCTTTAGTCGTTTTTTCTTCATAGTTTTCCGGACAAAAGCTACATTATTCCCACCTTTTCGAAGTGGCATACATATTTGATAACAACACATACGTTGTTTCATCTTGTGGTTCCAATTCAAGCACACGCTGAGCAGCTGTTTT-CCAAGATCAACTTCATTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584856" ref_strand="+" ref_description="SGN-U584856 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157360494|emb|CAO70057.1| (e_value=5e-101) unnamed; (*ATH) AT5G13230.1 (e_value=1e-71) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr5:4222517-4224985 FORWARD | Aliases: T31B5.50, T31B5_50; (*SWP) sp|Q9LNU6|PPR53_ARATH (e_value=7e-54) Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21; ">
      <seq>gctcatggatgtatatgctaagtgtggaaaggtggaaaatacagtagacatgtttctggagactgaaaacataaatgatgtgtcatggaacactattattgttggccatgtacaatgtggagatggagagaaggcactagctctgtttattgatatgcatgaagctcaagggcgagcttcatcggtgacatattcgtctctgctgcgtgcttgtgcaaccctggctgcattggagccaggtcttcaaattcactcgtttactataaaaaccatttacgatcaagatcttgcagttggaaatgctttagtggatatgtatgcaaaatgtgggagtattaaggatgctcggttggtgtttgaaatgatgattgagcgagatgttgtatcatggaatgctatggtttcagcatattccatgcatggtcttgggaatgaagctctcagtatctttgagagaatgcgcagaacgcatgtcaaacctaatcaattaacatttcttggtgtcctttcagcatgtagcaattcaggatctttgaatcatggatatgcctatccctctttgatgctggatgattatggtattgagccttgcgttgaacattatacatgcatggtatcacttttggggcgcttaggtcactttgataaggctcgtaagttgatcgaagacatcccatttgagccaagtgtcatggtatggcgtgctttgcttggtgcctgtgttcttcataatgaagttgatcttgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="-" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="24538" stop="23190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24239" g_stop="23490" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="-" ref_id="SGN-U584856" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24239" e_stop="23490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCATGGATGTATATGCTAAGTGTGGAAAGGTGGAAAATACAGTAGACATGTTTCTGGAGACTGAAAACATAAATGATGTGTCATGGAACACTATTATTGTTGGCCATGTACAATGTGGAGATGGAGAGAAGGCACTAGCTCTGTTTATTGATATGCATGAAGCTCAAGGGCGAGCTTCATCGGTGACATATTCGTCTCTGCTGCGTGCTTGTGCAACCCTGGCTGCATTGGAGCCAGGTCTTCAAATTCACTCGTTTACTATAAAAACCATTTACGATCAAGATCTTGCAGTTGGAAATGCTTTAGTGGATATGTATGCAAAATGTGGGAGTATTAAGGATGCTCGGTTGGTGTTTGAAATGATGATTGAGCGAGATGTTGTATCATGGAATGCTATGGTTTCAGCATATTCCATGCATGGTCTTGGGAATGAAGCTCTCAGTATCTTTGAGAGAATGCGCAGAACGCATGTCAAACCTAATCAATTAACATTTCTTGGTGTCCTTTCAGCATGTAGCAATTCAGGATCTTTGAATCATGGATATGCCTATCTCTCTTTGATGCTGGATGATTATGGTATTGAGCCTTGCGTTGAACATTATACATGCATGGTATCACTTTTGGGGCGCTTAGGTCACTTTGATAAGGCTCGTAAGTTGATCGAAGACATCCCATTTGAGCCAAGTGTCATGGTATGGCGTGCTTTGCTTGGTGCCTGTGTTCTTCATAATGAAGTTGATCTTGGGAA</genome_strand>
        <mrna_strand>GCTCATGGATGTATATGCTAAGTGTGGAAAGGTGGAAAATACAGTAGACATGTTTCTGGAGACTGAAAACATAAATGATGTGTCATGGAACACTATTATTGTTGGCCATGTACAATGTGGAGATGGAGAGAAGGCACTAGCTCTGTTTATTGATATGCATGAAGCTCAAGGGCGAGCTTCATCGGTGACATATTCGTCTCTGCTGCGTGCTTGTGCAACCCTGGCTGCATTGGAGCCAGGTCTTCAAATTCACTCGTTTACTATAAAAACCATTTACGATCAAGATCTTGCAGTTGGAAATGCTTTAGTGGATATGTATGCAAAATGTGGGAGTATTAAGGATGCTCGGTTGGTGTTTGAAATGATGATTGAGCGAGATGTTGTATCATGGAATGCTATGGTTTCAGCATATTCCATGCATGGTCTTGGGAATGAAGCTCTCAGTATCTTTGAGAGAATGCGCAGAACGCATGTCAAACCTAATCAATTAACATTTCTTGGTGTCCTTTCAGCATGTAGCAATTCAGGATCTTTGAATCATGGATATGCCTATCCCTCTTTGATGCTGGATGATTATGGTATTGAGCCTTGCGTTGAACATTATACATGCATGGTATCACTTTTGGGGCGCTTAGGTCACTTTGATAAGGCTCGTAAGTTGATCGAAGACATCCCATTTGAGCCAAGTGTCATGGTATGGCGTGCTTTGCTTGGTGCCTGTGTTCTTCATAATGAAGTTGATCTTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603216" ref_strand="+" ref_description="SGN-U603216 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147819178|emb|CAN71462.1| (e_value=5e-42) hypothetical; (*ATH) AT5G13230.1 (e_value=4e-30) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr5:4222517-4224985 FORWARD | Aliases: T31B5.50, T31B5_50; ">
      <seq>ggaacctgcgttgtcttggcgaagcacgcatgctgagatacgtaatggccagaacacagccatggaagagatttgcaaccttcccagcatcccattgttgggctctttggcacaggcaattctcatcccagtccctctacttgtcgaaagggcaatacacgaatttggaaatttcatctttcaattcatctacatacgccaatgtgcttcagaattgcataaagaacagggatttcattgttggaaaggcactccattgcgatgttttaaagagaggaggatgtttagacctatttggccagaacattttgctcaatttatatgttaagtctgagttattacatgatgcagttcagctgttcgatgaaatatctacgaaaaatgtggtttgatttgtaacattacttcagggacatttgcaggcagaggagtatattacagctgttgaattgtttaatagattgcatagagaaggtcatgagctgaacccatttgtattcacaacaatcttgaaagtgcttgtgggtatggatgaagcggagatgggttggaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="-" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="25755" stop="24600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25455" g_stop="24900" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="-" ref_id="SGN-U603216" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25455" e_stop="24900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCTGCGTTGTCTTGGCGAAGCACGCATGCTGAGATACGTACTGGCCAGAACACAGCCATGGAAGAGGTTTGCAACCTTCCCAGCATCCCATTGTTGGGCTCTTTGGCACAGGCAATTCTCATCCCAGTCCCTCTACTTGTCGAAAGGGCAATACACGAATTTGGAAATTTCATCTTTCAATTCATCTACATACGCCAATGTGCTTCAGAATTGCATAAAGAACAGGGATTTCATTGTTGGAAAGGCACTCCATTGCGATGTTTTAAAGAGAGGAGGATGTTTAGACCTATTTGGCCAGAACATTTTGCTCAATTTATATGTTAAGTCTGAGTTATTACATGATGCAGTTCAGCTGTTCGATGAAATATCTACGAAAAATGTGGTTTCATTTGTAACATTACTTCAGGGACATTTGCAGGCAGAGGAGTATATTACAGCTGTTGAATTGTTTAATAGATTGCATAGAGAAGGTCATGAGCTGAACCCATTTGTATTCACAACAATCTTGAAAGTGCTTGTGGGTATGGATGAAGCGGAGATGGGTTGGAACAT</genome_strand>
        <mrna_strand>GGAACCTGCGTTGTCTTGGCGAAGCACGCATGCTGAGATACGTAATGGCCAGAACACAGCCATGGAAGAGATTTGCAACCTTCCCAGCATCCCATTGTTGGGCTCTTTGGCACAGGCAATTCTCATCCCAGTCCCTCTACTTGTCGAAAGGGCAATACACGAATTTGGAAATTTCATCTTTCAATTCATCTACATACGCCAATGTGCTTCAGAATTGCATAAAGAACAGGGATTTCATTGTTGGAAAGGCACTCCATTGCGATGTTTTAAAGAGAGGAGGATGTTTAGACCTATTTGGCCAGAACATTTTGCTCAATTTATATGTTAAGTCTGAGTTATTACATGATGCAGTTCAGCTGTTCGATGAAATATCTACGAAAAATGTGGTTTGATTTGTAACATTACTTCAGGGACATTTGCAGGCAGAGGAGTATATTACAGCTGTTGAATTGTTTAATAGATTGCATAGAGAAGGTCATGAGCTGAACCCATTTGTATTCACAACAATCTTGAAAGTGCTTGTGGGTATGGATGAAGCGGAGATGGGTTGGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590594" ref_strand="+" ref_description="SGN-U590594 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205313|gb|AAT38742.2| (e_value=2e-14) 'chromo'; ">
      <seq>gagatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagctgcntgcagcaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="+" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="28114" stop="29384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28414" g_stop="29084" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="+" ref_id="SGN-U590594" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28414" e_stop="29084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATATGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGGTTGACTACATGGCCTAAAATGACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGTTGCTACATAAGATGGGCATAGTGGAACAATTCGGTGTTGAGTTTGTAACCTATCAGTTTTAGGGAAATGCCAAAATGTGGTGGCGATCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATGTATGGAGAAGTATATGCCCCGGACTTTAAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTAGAGCAAGGCAGGATGTCGGTTACTACGTATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAGCTTTGCTTTAGTCCACAAGAGCGGATTCACCATTTTGTGAAGGAATTGAGGTCTGATTTGTAGATTCCAGCCTTACAGGTAGCTAC-TGCAGCAAAATC</genome_strand>
        <mrna_strand>GAGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCTGCNTGCAGCAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="-" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="30282" stop="29358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29983" g_stop="29658" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="-" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29983" e_stop="29658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTTTCCCAGGCTTGGCCAATGTCACAGCTTTGGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAATAAGCCATTTCTAAGATAATGAAGTCTACATGAGTATTGCTCCCCATAAAAGTCATAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCGTGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGAGCCAGGATCAAATAATACAGAAGTCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592023" ref_strand="+" ref_description="SGN-U592023 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-56) Putative; ">
      <seq>ttacttcggcacgaggatttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="+" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="29380" stop="30619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29680" g_stop="30319" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="654" r_length="638" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="+" ref_id="SGN-U592023" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29680" e_stop="30319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGATCCTGGCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACACGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTATGACTTTTATGGGGAGCAATACTCATGTAGACTTCATTATCTTAGAAATGGCTTATTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAACTTTGCAATCTTAGATTGTAATGCCAAAGCTGTGACATTGGCCAAGCCTGGGAAAGATCCGCTAGTATGGGAGGGTGACTATACTTCCACCCCAGTTCATATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCGTGCAGACCTTCTTGGTATGCCACCGGATAGGGATATCGACTTTTGCATTGATCTGGAGTCGGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAAGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAGGCAAAGGCTTCATT</genome_strand>
        <mrna_strand>ATTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602116" ref_strand="+" ref_description="SGN-U602116 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>actcctttatttgaattaaaacttgatagaaaaacatcttccaaggctacccagatactcgacaaggtctggatggagtcgaggtccagttgctgacgctgatctttgcctccttgcttccactagggccccctttctcctcctcgttgatcacgacgttgcaaactttcccttcttctttggttagcgataaccccttcaagtcgtctgagatctcatcaatattgtctcccatgaaacctgctaatcgaaatgattgatacaatggcggtatgggtttcttcaatggatagtagtacccatctctaggtggtcgccaatcgagccattcttcggtggtgtatttataacccaaaccaaaagtggtggaatgtcgaacaggctgtataggttcgactatcccttgtaatttagcccccaaacctttcccaagctcgaaaccgaaccaggccatcatatctatgattttttggctgaaccaaggttgcaactcaatattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0058F07-zO1sv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0058F07.2" temp_strand="-" temp_description="C00SLm0058F07.2  CU457812.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0058F07 sequenced_by:sanger upload_account_name:uk">
        <position start="46100" stop="45000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45800" g_stop="45298" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0058F07.2" gen_strand="-" ref_id="SGN-U602116" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0058F07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45800" e_stop="45298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTTTATTTGAATTAAAACTTGATAGAAAAAACATCTTCCAAGGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGATGCTGATCTTTGCTTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCTTTGATCACGACGTTGCAAACTTTCCCCTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCATCTGAGATCTCATCAATATTGCCTCCCATGAAACCTGCTGATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTACTTATACCCCAAACCAAAAGTAGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGCAATTCAGCCCCCAAACCTTTTCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTAAACCAAGGTTGCAACTCAATATTACC</genome_strand>
        <mrna_strand>ACTCCTTTATTTGAATTAAAACTTGATAG-AAAAACATCTTCCAAGGCTACCCAGATACTCGACAAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTAATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11159" PGL_stop="10907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11159" e_stop="10907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="11159" e_stop="10907" e_length="253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11159" stop="10907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACGAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGAATTTGAGTTATTAATATCAACCCACAAAATATATAATTATAGCAGGAATAGTCCAAAACGCCCCTTTAAAACTTAACCAGAAATCCGACTCCAACTGGGATTATGCAAACTGTGACGGGCCGTCGCGCTTGCGACGGTCCGTCCTGCT</gDNA_template>
            <first_frame> I  Q  T  L  F  L  L  P  *  L  V  Y  N  *  E  *  K  M  A  I  I  P  H  E  L  T  *  G  Y  L  F  *  P  P  R  I  *  V  I  N  I  N  P  Q  N  I  *  L  *  Q  E  *  S  K  T  P  L  *  N  L  T  R  N  P  T  P  T  G  I  M  Q  T  V  T  G  R  R  A  C  D  G  P  S  C  </first_frame>
            <second_frame>  F  K  P  S  F  F  Y  P  N  *  Y  I  I  K  N  K  R  W  Q  *  Y  P  T  N  *  L  K  V  T  S  F  N  P  Q  E  F  E  L  L  I  S  T  H  K  I  Y  N  Y  S  R  N  S  P  K  R  P  F  K  T  *  P  E  I  R  L  Q  L  G  L  C  K  L  *  R  A  V  A  L  A  T  V  R  P  A </second_frame>
            <third_frame>   S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  T  P  R  I  N  L  R  L  P  L  L  T  P  K  N  L  S  Y  *  Y  Q  P  T  K  Y  I  I  I  A  G  I  V  Q  N  A  P  L  K  L  N  Q  K  S  D  S  N  W  D  Y  A  N  C  D  G  P  S  R  L  R  R  S  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0058F07.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11436" PGL_stop="12036"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11436" e_stop="11549"/>
            <exon e_start="11629" e_stop="12036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.947"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="11436" e_stop="11549" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11550" i_stop="11628" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.919">
            <gDNA_exon_boundary e_start="11629" e_stop="12036" e_length="408"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11436" stop="11549"/>
              <exon start="11629" stop="12036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593741" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACCCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGACTCGATGAACGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATG : GATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGGTGTCACGTTCCGACACTAGGATAGAATAAGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACATGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATTCAATCTAATGAACTGAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTCATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTAGGATATTGCTTAATACATACT</gDNA_template>
            <first_frame> K  P  *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  R  K  *  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  M  :  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  G  V  T  F  R  H  *  D  R  I  R  I  G  C  H  V  P  V  P  G  *  N  E  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  M  R  G  I  K  I  M  N  L  E  I  C  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  G  Y  C  L  I  H  T </first_frame>
            <second_frame>  N  P  N  L  L  C  *  *  *  C  L  G  I  K  E  D  S  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  W :   I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  V  S  R  S  D  T  R  I  E  *  G  S  G  A  T  F  R  Y  Q  D  R  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  *  G  E  *  R  *  *  I  L  K  Y  V  N  I  F  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  S  W  *  L  *  M  L  H  A  K  D  I  S  *  F  *  D  I  A  *  Y  I   </second_frame>
            <third_frame>   T  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  T  R  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y   : G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  C  H  V  P  T  L  G  *  N  K  D  R  V  P  R  S  G  T  R  I  E  *  G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  L  I  Y  S  I  *  *  T  E  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  H  G  N  C  K  C  C  M  L  R  I  L  V  D  F  R  I  L  L  N  T  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0058F07.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="12798" PGL_stop="15373"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12798" e_stop="14983"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="12798" e_stop="14983" e_length="2186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12798" stop="14983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12798" stop="14221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12815" stop="13567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12861" stop="13416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACAACGGCAAGGACCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTAGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCATCATTAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGATACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCATGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGGTTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTAGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACTAACGATAGGGCCCATTGTTACGCTTTCCCTGCGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGAGGATCCACATTTTCTAATGTATCTTCCTCATTTGCTAATGGTCTAACTTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGAAAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTACTTTCTTCGTGCTAAGAAAAAGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTTCGATTGAGTCGGTTTCAGTAATCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAAATTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCACTGATG</gDNA_template>
            <first_frame> K  N  N  G  K  D  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  H  H  *  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  I  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  H  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K  P  D  D  F  T  P  T  S  T  S  K  R  F  R  K  G  G  E  F  N  G  A  Y  T  R  G  Q  G  S  G  S  Y  S  V  R  P  I  Q  S  S  L  Q  T  V  V  G  V  H  L  R  P  V  N  T  S  L  R  D  L  C  M  N  P  E  S  A  M  D  V  G  R  L  D  I  L  R  D  I  V  Q  N  R  V  T  D  L  Q  M  L  E  V  E  V  V  M  A  E  A  V  I  L  E  D  V  V  V  E  E  M  V  V  T  K  T  A  E  V  M  G  K  L  E  P  L  H  H  N  K  V  G  A  T  D  R  L  T  I  G  P  I  V  T  L  S  L  R  G  L  K  R  R  H  L  M  L  S  S  Q  V  I  F  W  F  V  I  A  W  L  L  Y  C  L  R  I  H  I  F  *  C  I  F  L  I  C  *  W  S  N  F  T  L  *  I  T  *  Y  A  Y  S  C  F  Y  S  G  G  *  V  C  G  S  *  K  G  V  *  V  L  F  G  E  L  C  G  E  K  H  L  C  R  F  G  Y  L  R  N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  E  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  K  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  A  F  D  *  V  G  F  S  N  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  R  S  R  T  G  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  R  V  K  R  V  K  G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  I  S  N  V  Y  R  L  Q  T  T  K  Q  G  N  H  K  E  Q  V  S  S  S  P  H  *   </first_frame>
            <second_frame>  R  T  T  A  R  T  V  V  E  V  V  G  G  R  P  L  G  E  E  D  E  R  L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  *  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  I  I  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  R  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  M  H  Y  P  G  M  P  P  N  C  V  S  V  H  K  S  E  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  R  W  *  T  L  *  *  K  W  K  E  *  S  Q  T  T  S  P  R  H  R  H  Q  K  G  F  E  R  E  V  S  L  M  V  L  T  L  E  D  R  V  R  E  V  T  Q  S  D  Q  F  S  L  H  Y  R  L  *  L  G  S  T  S  D  R  S  T  L  L  *  E  T  Y  A  *  T  Q  R  V  L  W  M  W  G  G  W  T  Y  *  E  I  L  S  K  T  E  L  Q  T  S  K  C  *  R  *  R  W  S  W  Q  R  P  L  F  W  R  T  W  W  S  R  K  W  W  S  P  K  R  P  R  *  W  E  N  *  S  H  Y  I  T  T  R  *  G  Q  R  T  D  *  R  *  G  P  L  L  R  F  P  C  A  V  *  S  G  G  I  *  C  C  H  H  R  *  S  F  G  L  *  L  H  G  F  C  I  V  *  G  S  T  F  S  N  V  S  S  S  F  A  N  G  L  T  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  V  V  E  K  V  Y  R  S  C  L  V  N  F  V  G  R  N  T  Y  V  D  L  V  I  L  E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  K  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  Y  F  L  R  A  K  K  K  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  I  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  K  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  T  D  </second_frame>
            <third_frame>   E  Q  R  Q  G  P  W  *  R  S  W  E  D  V  L  *  G  K  R  T  S  A  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  S  L  S  *  R  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  S  L  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  R  F  S  G  *  L  S  *  D  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  V  F  Q  S  T  R  A  N  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R  G  G  R  L  C  D  R  S  G  R  S  E  A  R  R  L  H  P  D  I  D  I  K  K  V  S  K  G  R  *  V  *  W  C  L  H  *  R  T  G  F  G  K  L  L  S  P  T  N  S  V  F  T  T  D  C  S  W  G  P  P  P  T  G  Q  H  F  S  E  R  P  M  H  E  P  R  E  C  Y  G  C  G  E  V  G  H  I  K  R  Y  C  P  K  Q  S  Y  R  P  P  N  V  R  G  R  G  G  H  G  R  G  R  Y  S  G  G  R  G  G  R  G  N  G  G  H  Q  N  G  R  G  D  G  K  T  R  A  T  T  S  Q  Q  G  R  G  N  G  Q  T  N  D  R  A  H  C  Y  A  F  P  A  R  S  E  A  E  A  S  D  A  V  I  T  G  N  L  L  V  C  D  C  M  A  S  V  L  F  E  D  P  H  F  L  M  Y  L  P  H  L  L  M  V  *  L  Y  I  V  N  Y  L  I  C  L  F  V  F  L  L  R  W  V  S  L  W  *  L  K  R  C  I  G  L  V  W  *  T  L  W  G  E  T  L  M  *  I  W  L  S  *  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  K  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  T  F  F  V  L  R  K  R  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  C  L  R  L  S  R  F  Q  *  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  S  I  S  N  R  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  Q  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  N  F  E  C  V  *  T  T  D  N  *  T  R  *  P  *  R  T  S  I  L  F  P  A  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13185" stop="14234"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1047</number_coding_nucleotides>
                  <number_encoded_amino_acids>349</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSKFLKLKPPVFKGAESEDAYDFLVDCHEILHKMGIVERFGVEFVSYQFQGNAKMWWRSHIECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFHALSRYATQLCFSPQERIRRFVKGLRSELRISALQIAATAKSFQEVVDFVIEVEGVKPDDFTPTSTSKRFRKGGEFNGAYTRGQGSGSYSVRPIQSSLQTVVGVHLRPVNTSLRDLCMNPESAMDVGRLDILRDIVQNRVTDLQMLEVEVVMAEAVILEDVVVEEMVVTKTAEVMGKLEPLHHNKVGATDRLTIGPIVTLSLRGLKRRHLMLSSQVIFWFVIAWLLYCLRIHIF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14218" stop="14982"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSTFSNVSSSFANGLTLHCELLDMPIRVSTPVGESVVVEKVYRSCLVNFVGRNTYVDLVILEMDDFDVILGMTWLSPQFAILDCNAKTVTLAKPGKDPLVWEGDYTSNPVRIIYFLRAKKKVSKGCLAFLAHLKDDTTQVPSIESVSVIREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGKFRMCIDYRQLNKVTIKNKYPLPRTD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12798" stop="13184"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNNGKDRGRGRGRTSSRGRGRAPSPSDTRAVTPPPTEEVIREGEDGETEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTNDHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12815" e_stop="13662"/>
            <exon e_start="14402" e_stop="14930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.918"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="12815" e_stop="13662" e_length="848"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13663" i_stop="14401" i_length="739"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="14402" e_stop="14930" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12815" stop="13567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12861" stop="13416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13462" stop="13662"/>
              <exon start="14402" stop="14930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTAGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCATCATTAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGATACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCATGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGAAAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTACTTTCTTCGTGCTAAGAAAAAGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTTCGATTGAGTCGGTTTCAGTAATCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAAATTTCGAATGTGTATAGACTACAG</gDNA_template>
            <first_frame> P  W  *  R  S  W  E  D  V  L  *  G  K  R  T  S  A  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  S  L  S  *  R  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  S  L  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  R  F  S  G  *  L  S  *  D  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  V  F  Q  S  T  R  A  N  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  E  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  K  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  A  F  D  *  V  G  F  S  N  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  R  S  R  T  G  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  R  V  K  R  V  K  G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  I  S  N  V  Y  R  L  Q </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  H  H  *  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  I  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  H  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  K  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  Y  F  L  R  A  K  K  K  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  I  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  K  F  R  M  C  I  D  Y   </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  G  E  E  D  E  R  L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  *  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  I  I  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  R  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  M  H  Y  P  G  M  P  P  N  C  V  S  V  H  K  S  E  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  K  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  T  F  F  V  L  R  K  R  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  C  L  R  L  S  R  F  Q  *  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  S  I  S  N  R  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  Q  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  N  F  E  C  V  *  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13185" stop="13662"/>
                    <exon start="14402" stop="14928"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSKFLKLKPPVFKGAESEDAYDFLVDCHEILHKMGIVERFGVEFVSYQFQGNAKMWWRSHIECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFHALSRYATQLCFSPQERIRRFVKGLRSELRISALQIAATAKSFQEMDDFDVILGMTWLSPQFAILDCNAKTVTLAKPGKDPLVWEGDYTSNPVRIIYFLRAKKKVSKGCLAFLAHLKDDTTQVPSIESVSVIREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGKFRMCIDY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12816" stop="13184"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRAPSPSDTRAVTPPPTEEVIREGEDGETEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTNDHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="12815" e_stop="13699"/>
            <exon e_start="14810" e_stop="15373"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.914"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="12815" e_stop="13699" e_length="885"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13700" i_stop="14809" i_length="1110"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="14810" e_stop="15373" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12815" stop="13567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12827" stop="13699"/>
              <exon start="14810" stop="15373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12861" stop="13416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTAGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCATCATTAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGATACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCATGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAA : AGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAAATTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCACTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATTTGGACCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</gDNA_template>
            <first_frame> P  W  *  R  S  W  E  D  V  L  *  G  K  R  T  S  A  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  S  L  S  *  R  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  S  L  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  R  F  S  G  *  L  S  *  D  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  V  F  Q  S  T  R  A  N  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R  G  G  R  L  C  D  R  S  G  R  S  E  :  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  N  F  E  C  V  *  T  T  D  N  *  T  R  *  P  *  R  T  S  I  L  F  P  A  L  M  T  C  S  I  S  Y  K  V  L  V  S  S  L  R  L  T  *  D  P  V  I  I  N  *  K  Y  G  Q  R  M  C  Q  R  L  L  F  E  R  G  M  G  I  T  N  L  *  *  C  L  L  V  L  R  M  P  L  L  R  S  *  A  *  *  T  G  F  L  S  H  I  W  T  S  S  *  S  Y  L  L  M  I  Y  W  Y  T  Q  R  A  R  R  N  M  K  S  I  *  E  W  Y  W  K  C  *  G  R  K  S  F  M  P  S  S  L  S  V  S  F  G  *  M  Q  C  P  S  W  G  T  W  F  L </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  H  H  *  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  I  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  H  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K :   G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  I  S  N  V  Y  R  L  Q  T  T  K  Q  G  N  H  K  E  Q  V  S  S  S  P  H  *  *  L  V  R  S  V  T  R  C  L  C  L  L  *  D  *  L  E  I  R  L  S  S  I  E  N  T  G  N  G  C  A  K  D  C  F  S  N  E  V  W  A  L  R  I  C  S  D  V  F  W  S  Y  E  C  P  C  C  V  H  E  L  D  E  R  D  F  *  A  I  F  G  P  L  R  D  R  I  Y  *  *  Y  I  G  I  L  K  E  Q  E  G  T  *  R  A  F  E  N  G  I  G  N  V  E  G  E  K  A  L  C  Q  V  L  *  V  *  V  L  A  R  C  S  V  L  L  G  A  R  G  F   </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  G  E  E  D  E  R  L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  *  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  I  I  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  R  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  M  H  Y  P  G  M  P  P  N  C  V  S  V  H  K  S  E  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  R  W  *  T  L  *  *  K  W  K  E  *   : K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  K  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  T  D  D  L  F  D  Q  L  Q  G  A  C  V  F  S  K  I  D  L  R  S  G  Y  H  Q  L  K  I  R  A  T  D  V  P  K  T  A  F  R  T  R  Y  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  A  P  A  A  F  M  S  L  M  N  G  I  F  K  P  Y  L  D  L  F  V  I  V  F  I  D  D  I  L  V  Y  S  K  S  K  K  E  H  E  E  H  L  R  M  V  L  E  M  L  R  E  K  K  L  Y  A  K  F  S  K  C  E  F  W  L  D  A  V  S  F  L  G  H  V  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13699" stop="15372"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAQLQELLNKGFIRPSASPWGAPVLFVKKKDGKFRMCIDYRQLNKVTIKNKYPLPRTDDLFDQLQGACVFSKIDLRSGYHQLKIRATDVPKTAFRTRYGHYEFVVMSFGLTNAPAAFMSLMNGIFKPYLDLFVIVFIDDILVYSKSKKEHEEHLRMVLEMLREKKLYAKFSKCEFWLDAVSFLGHVVS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13185" stop="13699"/>
                    <exon start="14810" stop="14849"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSKFLKLKPPVFKGAESEDAYDFLVDCHEILHKMGIVERFGVEFVSYQFQGNAKMWWRSHIECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFHALSRYATQLCFSPQERIRRFVKGLRSELRISALQIAATAKSFQEVVDFVIEVEGVKGTTSRVIEQRLY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12816" stop="13184"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRAPSPSDTRAVTPPPTEEVIREGEDGETEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTNDHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14299" PGL_stop="12798"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14299" e_stop="12798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="14299" e_stop="12798" e_length="1502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14299" stop="12798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATTAGAAAATGTGGATCCTCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCGCAGGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCTAGTTTTCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAACCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCATGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTATCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTAATGATGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCTAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGCGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGTCCTTGCCGTTGTTCTT</gDNA_template>
            <first_frame> H  E  *  A  Y  Q  V  I  H  N  V  K  L  D  H  *  Q  M  R  K  I  H  *  K  M  W  I  L  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  R  R  E  S  V  T  M  G  P  I  V  S  L  S  V  A  P  T  L  L  *  C  S  G  S  S  F  P  I  T  S  A  V  L  V  T  T  I  S  S  T  T  T  S  S  R  I  T  A  S  A  M  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  S  L  N  M  S  N  L  P  T  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R  W  T  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  A  P  L  N  S  P  P  F  R  N  L  F  D  V  D  V  G  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  C  G  L  K  H  S  W  V  A  Y  R  D  N  A  *  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  I  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  *  *  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  S  L  P  L  F   </first_frame>
            <second_frame>  T  N  R  H  I  K  *  F  T  M  *  S  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  A  G  K  A  *  Q  W  A  L  S  L  V  C  P  L  P  L  P  C  C  D  V  V  A  L  V  F  P  S  P  R  P  F  W  *  P  P  F  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  I  C  P  T  S  P  H  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G  G  G  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  H  H  *  T  H  L  P  F  E  T  F  L  M  S  M  S  G  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  F  A  L  V  D  *  N  T  V  G  W  H  T  G  I  M  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  S  H  D  S  Q  P  E  N  R  K  H  P  Q  I  P  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  N  D  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  G  V  S  G  P  D  Q  I  T  R  *  D  K  L  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  A  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  C  R  C  S  </second_frame>
            <third_frame>   R  I  G  I  S  S  N  S  Q  C  K  V  R  P  L  A  N  E  E  D  T  L  E  N  V  D  P  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  *  S  V  R  C  P  Y  L  V  V  M  *  W  L  *  F  S  H  H  L  G  R  F  G  D  H  H  F  L  D  H  H  V  L  Q  N  N  G  L  C  H  D  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  I  S  *  Y  V  Q  P  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  S  L  L  W  T  E  T  Q  L  G  G  I  P  G  *  C  M  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  Y  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  R  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  L  M  M  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  *  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  R  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  V  L  A  V  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14074" stop="13811"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSFPITSAVLVTTISSTTTSSRITASAMTTSTSNIWRSVTLFWTISLNMSNLPTSIALSGFMHRSLREVLTGRRWTPTTVCSED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13277" stop="13020"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLMTVNQKIVSILRFRTLEDWRFQFQELTEKLMMIICHYRPSSQTWKRAYFQWNIHAGSHSSRMLYLRSLRCWCRKHWGCLALIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13765" stop="13529"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APLNSPPFRNLFDVDVGVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIRSCGLKHSWVAYRDNA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13001" stop="12798"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLIDHLWGRLGWQSLILHLFSFPILPFSYYFLSRWRSHCPSIRWARRSSSSPRGRPPTTSTTVLAVVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12994" stop="12800"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGNPSFCTCSVSPSSPSLITSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRSLPLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="15502" PGL_stop="14690"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15502" e_stop="14690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="15502" e_stop="14690" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15502" stop="14690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAGTGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAATTTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCGAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTG</gDNA_template>
            <first_frame> R  I  P  *  Q  I  D  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  I  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  P  V  R  D  R  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L </first_frame>
            <second_frame>  E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  S  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  F  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  R  F  E  I  D  T  E  V  N  I  P  I  W  W  H  T  R  K  I   </second_frame>
            <third_frame>   N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  V  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  N  F  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15237" stop="14998"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKRHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15305" stop="15108"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="16767" PGL_stop="16275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16767" e_stop="16275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="16767" e_stop="16275" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16767" stop="16275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAATCGAACGATTTCTGAGATATAGATCTTGGCTAACTTCTCGGCATTGTAAGTCACCTTAACCGGAATAAAATGAACAGATTTAGTTAACCTATGAACAATCACCCAAATGGAGTCATACTTACCCATTGTCCTTGGAAGACCAACCACAAAGTCCATTGCAATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCTGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAGAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGGTGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGT</gDNA_template>
            <first_frame> T  Q  F  R  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  *  W  N  P  M  Q  S  N  D  F  *  D  I  D  L  G  *  L  L  G  I  V  S  H  L  N  R  N  K  M  N  R  F  S  *  P  M  N  N  H  P  N  G  V  I  L  T  H  C  P  W  K  T  N  H  K  V  H  C  N  S  L  P  F  P  F  R  N  G  H  S  L  K  C  S  S  G  P  L  V  F  I  L  Y  L  L  T  V  W  T  L  G  N  R  V  N  N  I  T  L  H  S  T  P  P  K  V  L  L  *  V  T  V  H  L  G  C  T  R  V  Y  R  I  P  *  T  M  S  L  C  Q  N  S  V  D  Q  I  I  D  A  G  </first_frame>
            <second_frame>  P  N  S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  D  S  G  T  P  C  N  R  T  I  S  E  I  *  I  L  A  N  F  S  A  L  *  V  T  L  T  G  I  K  *  T  D  L  V  N  L  *  T  I  T  Q  M  E  S  Y  L  P  I  V  L  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  L  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  L  A  I  E  S  T  I  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  L  I  K  S  S  T  R  G </second_frame>
            <third_frame>   P  I  P  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  I  V  E  P  H  A  I  E  R  F  L  R  Y  R  S  W  L  T  S  R  H  C  K  S  P  *  P  E  *  N  E  Q  I  *  L  T  Y  E  Q  S  P  K  W  S  H  T  Y  P  L  S  L  E  D  Q  P  Q  S  P  L  Q  F  S  P  I  S  I  P  E  W  A  F  S  E  V  F  L  W  A  F  G  V  H  T  L  L  V  D  S  L  D  T  W  Q  *  S  Q  Q  Y  H  A  S  F  Y  S  T  K  S  V  A  L  G  H  G  T  S  W  L  H  P  G  V  *  N  T  L  N  Y  E  P  L  S  E  *  C  *  S  N  H  R  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16593" stop="16369"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMNNHPNGVILTHCPWKTNHKVHCNSLPFPFRNGHSLKCSSGPLVFILYLLTVWTLGNRVNNITLHSTPPKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="16982" PGL_stop="16806"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16982" e_stop="16806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="16982" e_stop="16806" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16982" stop="16806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAACGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  T  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  D  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  R  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0058F07.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="22682" PGL_stop="23513"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22682" e_stop="23513"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="22682" e_stop="23513" e_length="832"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22682" stop="23513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602735" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGAAATGTCATGTGTCTTTATTTGATTTAATAGTTTGTCACATCATGTGCATGTGCATTATACACACTTCCTCTTTTGATCAAGTGTTAATAGGAAATAAGGTTGGTTGAAGTGTCTAATTAAAATAGGCATACAACTTTAAATAGTTGTGGATGCTTTAAGCCTTCATTTTATCAGCATCAGTCCTTAAGAGGCCAAAACAGGCAAGTTTCATTTAGATGGATACATAGAAAGCCTAGGAGCTGAGGTATATTACCAGTAATCACCACATGAACAAGCTCCACTTTGGAAGTGGTGAAACCTATTTATATCTCTTATAACAATTTCTCGCTGCACAAGAGTTGATATAAATTTGATTGCTGCATGACAGTCCAAACATATTCGTAGATTTTTAATAATCCGAATTGGGCTTCCAGGCGGCATTCTTACTAAAGCAAAGGCTAAAGCTAATCTCTCACTATGTAACCATAGGAGGCGTATCTTTTCATCATCGTCCACATCAAGTAGAATAACATCAGAATTAGGAACATAGCCTCCCCCCTTACTTTTCAAGTTGAGCCATTCCAACATTCCGTGTATAAGTTTGATATCAGGATGTGAAGCATCACCAACAGAGAAATAATGAACACTGCCCTGGTTTTCAACCCAACTAAGTCCTGGTTCCTTCTTTAGTCGTTTTTTCTTCATAGTTTTCCGGACAAAAGCTACATTATTCCACCTTTTCGAAGTGGCATACATATTTGATAACAACACATACGTTGTTTCATCTTGTGGTTCCAATTCAAGCACACACTGAGCAGCTGTTTTCCCAAGATCAACTTCATTATGA</gDNA_template>
            <first_frame> N  *  N  V  M  C  L  Y  L  I  *  *  F  V  T  S  C  A  C  A  L  Y  T  L  P  L  L  I  K  C  *  *  E  I  R  L  V  E  V  S  N  *  N  R  H  T  T  L  N  S  C  G  C  F  K  P  S  F  Y  Q  H  Q  S  L  R  G  Q  N  R  Q  V  S  F  R  W  I  H  R  K  P  R  S  *  G  I  L  P  V  I  T  T  *  T  S  S  T  L  E  V  V  K  P  I  Y  I  S  Y  N  N  F  S  L  H  K  S  *  Y  K  F  D  C  C  M  T  V  Q  T  Y  S  *  I  F  N  N  P  N  W  A  S  R  R  H  S  Y  *  S  K  G  *  S  *  S  L  T  M  *  P  *  E  A  Y  L  F  I  I  V  H  I  K  *  N  N  I  R  I  R  N  I  A  S  P  L  T  F  Q  V  E  P  F  Q  H  S  V  Y  K  F  D  I  R  M  *  S  I  T  N  R  E  I  M  N  T  A  L  V  F  N  P  T  K  S  W  F  L  L  *  S  F  F  L  H  S  F  P  D  K  S  Y  I  I  P  P  F  R  S  G  I  H  I  *  *  Q  H  I  R  C  F  I  L  W  F  Q  F  K  H  T  L  S  S  C  F  P  K  I  N  F  I  M  </first_frame>
            <second_frame>  I  E  M  S  C  V  F  I  *  F  N  S  L  S  H  H  V  H  V  H  Y  T  H  F  L  F  *  S  S  V  N  R  K  *  G  W  L  K  C  L  I  K  I  G  I  Q  L  *  I  V  V  D  A  L  S  L  H  F  I  S  I  S  P  *  E  A  K  T  G  K  F  H  L  D  G  Y  I  E  S  L  G  A  E  V  Y  Y  Q  *  S  P  H  E  Q  A  P  L  W  K  W  *  N  L  F  I  S  L  I  T  I  S  R  C  T  R  V  D  I  N  L  I  A  A  *  Q  S  K  H  I  R  R  F  L  I  I  R  I  G  L  P  G  G  I  L  T  K  A  K  A  K  A  N  L  S  L  C  N  H  R  R  R  I  F  S  S  S  S  T  S  S  R  I  T  S  E  L  G  T  *  P  P  P  L  L  F  K  L  S  H  S  N  I  P  C  I  S  L  I  S  G  C  E  A  S  P  T  E  K  *  *  T  L  P  W  F  S  T  Q  L  S  P  G  S  F  F  S  R  F  F  F  I  V  F  R  T  K  A  T  L  F  H  L  F  E  V  A  Y  I  F  D  N  N  T  Y  V  V  S  S  C  G  S  N  S  S  T  H  *  A  A  V  F  P  R  S  T  S  L  * </second_frame>
            <third_frame>   L  K  C  H  V  S  L  F  D  L  I  V  C  H  I  M  C  M  C  I  I  H  T  S  S  F  D  Q  V  L  I  G  N  K  V  G  *  S  V  *  L  K  *  A  Y  N  F  K  *  L  W  M  L  *  A  F  I  L  S  A  S  V  L  K  R  P  K  Q  A  S  F  I  *  M  D  T  *  K  A  *  E  L  R  Y  I  T  S  N  H  H  M  N  K  L  H  F  G  S  G  E  T  Y  L  Y  L  L  *  Q  F  L  A  A  Q  E  L  I  *  I  *  L  L  H  D  S  P  N  I  F  V  D  F  *  *  S  E  L  G  F  Q  A  A  F  L  L  K  Q  R  L  K  L  I  S  H  Y  V  T  I  G  G  V  S  F  H  H  R  P  H  Q  V  E  *  H  Q  N  *  E  H  S  L  P  P  Y  F  S  S  *  A  I  P  T  F  R  V  *  V  *  Y  Q  D  V  K  H  H  Q  Q  R  N  N  E  H  C  P  G  F  Q  P  N  *  V  L  V  P  S  L  V  V  F  S  S  *  F  S  G  Q  K  L  H  Y  S  T  F  S  K  W  H  T  Y  L  I  T  T  H  T  L  F  H  L  V  V  P  I  Q  A  H  T  E  Q  L  F  S  Q  D  Q  L  H  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0058F07.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="24239" PGL_stop="23490"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24239" e_stop="23490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="24239" e_stop="23490" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24239" stop="23490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCATGGATGTATATGCTAAGTGTGGAAAGGTGGAAAATACAGTAGACATGTTTCTGGAGACTGAAAACATAAATGATGTGTCATGGAACACTATTATTGTTGGCCATGTACAATGTGGAGATGGAGAGAAGGCACTAGCTCTGTTTATTGATATGCATGAAGCTCAAGGGCGAGCTTCATCGGTGACATATTCGTCTCTGCTGCGTGCTTGTGCAACCCTGGCTGCATTGGAGCCAGGTCTTCAAATTCACTCGTTTACTATAAAAACCATTTACGATCAAGATCTTGCAGTTGGAAATGCTTTAGTGGATATGTATGCAAAATGTGGGAGTATTAAGGATGCTCGGTTGGTGTTTGAAATGATGATTGAGCGAGATGTTGTATCATGGAATGCTATGGTTTCAGCATATTCCATGCATGGTCTTGGGAATGAAGCTCTCAGTATCTTTGAGAGAATGCGCAGAACGCATGTCAAACCTAATCAATTAACATTTCTTGGTGTCCTTTCAGCATGTAGCAATTCAGGATCTTTGAATCATGGATATGCCTATCTCTCTTTGATGCTGGATGATTATGGTATTGAGCCTTGCGTTGAACATTATACATGCATGGTATCACTTTTGGGGCGCTTAGGTCACTTTGATAAGGCTCGTAAGTTGATCGAAGACATCCCATTTGAGCCAAGTGTCATGGTATGGCGTGCTTTGCTTGGTGCCTGTGTTCTTCATAATGAAGTTGATCTTGGGAA</gDNA_template>
            <first_frame> P  H  G  C  I  C  *  V  W  K  G  G  K  Y  S  R  H  V  S  G  D  *  K  H  K  *  C  V  M  E  H  Y  Y  C  W  P  C  T  M  W  R  W  R  E  G  T  S  S  V  Y  *  Y  A  *  S  S  R  A  S  F  I  G  D  I  F  V  S  A  A  C  L  C  N  P  G  C  I  G  A  R  S  S  N  S  L  V  Y  Y  K  N  H  L  R  S  R  S  C  S  W  K  C  F  S  G  Y  V  C  K  M  W  E  Y  *  G  C  S  V  G  V  *  N  D  D  *  A  R  C  C  I  M  E  C  Y  G  F  S  I  F  H  A  W  S  W  E  *  S  S  Q  Y  L  *  E  N  A  Q  N  A  C  Q  T  *  S  I  N  I  S  W  C  P  F  S  M  *  Q  F  R  I  F  E  S  W  I  C  L  S  L  F  D  A  G  *  L  W  Y  *  A  L  R  *  T  L  Y  M  H  G  I  T  F  G  A  L  R  S  L  *  *  G  S  *  V  D  R  R  H  P  I  *  A  K  C  H  G  M  A  C  F  A  W  C  L  C  S  S  *  *  S  *  S  W  E </first_frame>
            <second_frame>  L  M  D  V  Y  A  K  C  G  K  V  E  N  T  V  D  M  F  L  E  T  E  N  I  N  D  V  S  W  N  T  I  I  V  G  H  V  Q  C  G  D  G  E  K  A  L  A  L  F  I  D  M  H  E  A  Q  G  R  A  S  S  V  T  Y  S  S  L  L  R  A  C  A  T  L  A  A  L  E  P  G  L  Q  I  H  S  F  T  I  K  T  I  Y  D  Q  D  L  A  V  G  N  A  L  V  D  M  Y  A  K  C  G  S  I  K  D  A  R  L  V  F  E  M  M  I  E  R  D  V  V  S  W  N  A  M  V  S  A  Y  S  M  H  G  L  G  N  E  A  L  S  I  F  E  R  M  R  R  T  H  V  K  P  N  Q  L  T  F  L  G  V  L  S  A  C  S  N  S  G  S  L  N  H  G  Y  A  Y  L  S  L  M  L  D  D  Y  G  I  E  P  C  V  E  H  Y  T  C  M  V  S  L  L  G  R  L  G  H  F  D  K  A  R  K  L  I  E  D  I  P  F  E  P  S  V  M  V  W  R  A  L  L  G  A  C  V  L  H  N  E  V  D  L  G   </second_frame>
            <third_frame>   S  W  M  Y  M  L  S  V  E  R  W  K  I  Q  *  T  C  F  W  R  L  K  T  *  M  M  C  H  G  T  L  L  L  L  A  M  Y  N  V  E  M  E  R  R  H  *  L  C  L  L  I  C  M  K  L  K  G  E  L  H  R  *  H  I  R  L  C  C  V  L  V  Q  P  W  L  H  W  S  Q  V  F  K  F  T  R  L  L  *  K  P  F  T  I  K  I  L  Q  L  E  M  L  *  W  I  C  M  Q  N  V  G  V  L  R  M  L  G  W  C  L  K  *  *  L  S  E  M  L  Y  H  G  M  L  W  F  Q  H  I  P  C  M  V  L  G  M  K  L  S  V  S  L  R  E  C  A  E  R  M  S  N  L  I  N  *  H  F  L  V  S  F  Q  H  V  A  I  Q  D  L  *  I  M  D  M  P  I  S  L  *  C  W  M  I  M  V  L  S  L  A  L  N  I  I  H  A  W  Y  H  F  W  G  A  *  V  T  L  I  R  L  V  S  *  S  K  T  S  H  L  S  Q  V  S  W  Y  G  V  L  C  L  V  P  V  F  F  I  M  K  L  I  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24238" stop="23492"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMDVYAKCGKVENTVDMFLETENINDVSWNTIIVGHVQCGDGEKALALFIDMHEAQGRASSVTYSSLLRACATLAALEPGLQIHSFTIKTIYDQDLAVGNALVDMYAKCGSIKDARLVFEMMIERDVVSWNAMVSAYSMHGLGNEALSIFERMRRTHVKPNQLTFLGVLSACSNSGSLNHGYAYLSLMLDDYGIEPCVEHYTCMVSLLGRLGHFDKARKLIEDIPFEPSVMVWRALLGACVLHNEVDLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="25455" PGL_stop="24900"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25455" e_stop="24900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="25455" e_stop="24900" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25455" stop="24900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603216" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAACCTGCGTTGTCTTGGCGAAGCACGCATGCTGAGATACGTACTGGCCAGAACACAGCCATGGAAGAGGTTTGCAACCTTCCCAGCATCCCATTGTTGGGCTCTTTGGCACAGGCAATTCTCATCCCAGTCCCTCTACTTGTCGAAAGGGCAATACACGAATTTGGAAATTTCATCTTTCAATTCATCTACATACGCCAATGTGCTTCAGAATTGCATAAAGAACAGGGATTTCATTGTTGGAAAGGCACTCCATTGCGATGTTTTAAAGAGAGGAGGATGTTTAGACCTATTTGGCCAGAACATTTTGCTCAATTTATATGTTAAGTCTGAGTTATTACATGATGCAGTTCAGCTGTTCGATGAAATATCTACGAAAAATGTGGTTTCATTTGTAACATTACTTCAGGGACATTTGCAGGCAGAGGAGTATATTACAGCTGTTGAATTGTTTAATAGATTGCATAGAGAAGGTCATGAGCTGAACCCATTTGTATTCACAACAATCTTGAAAGTGCTTGTGGGTATGGATGAAGCGGAGATGGGTTGGAACAT</gDNA_template>
            <first_frame> G  T  C  V  V  L  A  K  H  A  C  *  D  T  Y  W  P  E  H  S  H  G  R  G  L  Q  P  S  Q  H  P  I  V  G  L  F  G  T  G  N  S  H  P  S  P  S  T  C  R  K  G  N  T  R  I  W  K  F  H  L  S  I  H  L  H  T  P  M  C  F  R  I  A  *  R  T  G  I  S  L  L  E  R  H  S  I  A  M  F  *  R  E  E  D  V  *  T  Y  L  A  R  T  F  C  S  I  Y  M  L  S  L  S  Y  Y  M  M  Q  F  S  C  S  M  K  Y  L  R  K  M  W  F  H  L  *  H  Y  F  R  D  I  C  R  Q  R  S  I  L  Q  L  L  N  C  L  I  D  C  I  E  K  V  M  S  *  T  H  L  Y  S  Q  Q  S  *  K  C  L  W  V  W  M  K  R  R  W  V  G  T  </first_frame>
            <second_frame>  E  P  A  L  S  W  R  S  T  H  A  E  I  R  T  G  Q  N  T  A  M  E  E  V  C  N  L  P  S  I  P  L  L  G  S  L  A  Q  A  I  L  I  P  V  P  L  L  V  E  R  A  I  H  E  F  G  N  F  I  F  Q  F  I  Y  I  R  Q  C  A  S  E  L  H  K  E  Q  G  F  H  C  W  K  G  T  P  L  R  C  F  K  E  R  R  M  F  R  P  I  W  P  E  H  F  A  Q  F  I  C  *  V  *  V  I  T  *  C  S  S  A  V  R  *  N  I  Y  E  K  C  G  F  I  C  N  I  T  S  G  T  F  A  G  R  G  V  Y  Y  S  C  *  I  V  *  *  I  A  *  R  R  S  *  A  E  P  I  C  I  H  N  N  L  E  S  A  C  G  Y  G  *  S  G  D  G  L  E  H </second_frame>
            <third_frame>   N  L  R  C  L  G  E  A  R  M  L  R  Y  V  L  A  R  T  Q  P  W  K  R  F  A  T  F  P  A  S  H  C  W  A  L  W  H  R  Q  F  S  S  Q  S  L  Y  L  S  K  G  Q  Y  T  N  L  E  I  S  S  F  N  S  S  T  Y  A  N  V  L  Q  N  C  I  K  N  R  D  F  I  V  G  K  A  L  H  C  D  V  L  K  R  G  G  C  L  D  L  F  G  Q  N  I  L  L  N  L  Y  V  K  S  E  L  L  H  D  A  V  Q  L  F  D  E  I  S  T  K  N  V  V  S  F  V  T  L  L  Q  G  H  L  Q  A  E  E  Y  I  T  A  V  E  L  F  N  R  L  H  R  E  G  H  E  L  N  P  F  V  F  T  T  I  L  K  V  L  V  G  M  D  E  A  E  M  G  W  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25453" stop="24902"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLRCLGEARMLRYVLARTQPWKRFATFPASHCWALWHRQFSSQSLYLSKGQYTNLEISSFNSSTYANVLQNCIKNRDFIVGKALHCDVLKRGGCLDLFGQNILLNLYVKSELLHDAVQLFDEISTKNVVSFVTLLQGHLQAEEYITAVELFNRLHREGHELNPFVFTTILKVLVGMDEAEMGWN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="28414" PGL_stop="29084"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28414" e_stop="29084"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="28414" e_stop="29084" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28414" stop="29084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGATGATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATATGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGGTTGACTACATGGCCTAAAATGACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGTTGCTACATAAGATGGGCATAGTGGAACAATTCGGTGTTGAGTTTGTAACCTATCAGTTTTAGGGAAATGCCAAAATGTGGTGGCGATCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATGTATGGAGAAGTATATGCCCCGGACTTTAAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTAGAGCAAGGCAGGATGTCGGTTACTACGTATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAGCTTTGCTTTAGTCCACAAGAGCGGATTCACCATTTTGTGAAGGAATTGAGGTCTGATTTGTAGATTCCAGCCTTACAGGTAGCTACTGCAGCAAAATC</gDNA_template>
            <first_frame> E  M  I  N  Q  V  L  A  Y  L  S  G  L  Y  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  G  V  Q  H  A  A  A  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  W  P  K  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  Q  F  G  V  E  F  V  T  Y  Q  F  *  G  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  S  L  C  M  E  K  Y  M  P  R  T  L  R  D  R  R  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  T  T  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  H  H  F  V  K  E  L  R  S  D  L  *  I  P  A  L  Q  V  A  T  A  A  K   </first_frame>
            <second_frame>  R  *  L  I  R  F  L  L  I  L  A  G  Y  M  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  H  F  L  G  *  L  H  G  L  K  *  Q  V  I  S  T  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  S  C  Y  I  R  W  A  *  W  N  N  S  V  L  S  L  *  P  I  S  F  R  E  M  P  K  C  G  G  D  R  M  L  S  V  N  Q  H  R  H  H  L  *  L  G  H  H  S  L  A  Y  V  W  R  S  I  C  P  G  L  *  G  I  G  G  E  M  S  S  *  A  *  S  K  A  G  C  R  L  L  R  M  R  L  S  F  V  H  Y  P  G  M  P  P  S  F  A  L  V  H  K  S  G  F  T  I  L  *  R  N  *  G  L  I  C  R  F  Q  P  Y  R  *  L  L  Q  Q  N  </second_frame>
            <third_frame>   D  D  *  S  G  S  C  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  S  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  N  R  H  I  S  S  V  D  Y  M  A  *  N  D  K  *  S  A  R  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  V  A  T  *  D  G  H  S  G  T  I  R  C  *  V  C  N  L  S  V  L  G  K  C  Q  N  V  V  A  I  V  C  *  V  S  T  S  T  G  T  T  Y  D  L  G  I  I  L  *  L  M  Y  G  E  V  Y  A  P  D  F  K  G  *  E  E  R  *  V  P  E  P  R  A  R  Q  D  V  G  Y  Y  V  *  G  *  V  S  C  I  I  Q  V  C  H  P  A  L  L  *  S  T  R  A  D  S  P  F  C  E  G  I  E  V  *  F  V  D  S  S  L  T  G  S  Y  C  S  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28414" stop="28767"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMINQVLAYLSGLYDQGQTPPVFSAPAPQVPGVQHAAAVAPRMDASLEIGTFPRLTTWPKMTSDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVEQFGVEFVTYQF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28768" stop="29049"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNAKMWWRSYVECQPAQAPPMTWASFSSLCMEKYMPRTLRDRRRDEFLSLEQGRMSVTTYEAKFRALSRYATQLCFSPQERIHHFVKELRSDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="29983" PGL_stop="29658"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29983" e_stop="29658"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="29983" e_stop="29658" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29983" stop="29658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATCTTTCCCAGGCTTGGCCAATGTCACAGCTTTGGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAATAAGCCATTTCTAAGATAATGAAGTCTACATGAGTATTGCTCCCCATAAAAGTCATAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCGTGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGAGCCAGGATCAAATAATACAGAAGTCATGCAATCAC</gDNA_template>
            <first_frame> R  I  F  P  R  L  G  Q  C  H  S  F  G  I  T  I  *  D  C  K  V  W  R  K  P  S  H  T  Q  N  Y  I  E  I  S  H  F  *  D  N  E  V  Y  M  S  I  A  P  H  K  S  H  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  R  V  K  Q  F  T  M  *  I  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  A  R  I  K  *  Y  R  S  H  A  I   </first_frame>
            <second_frame>  G  S  F  P  G  L  A  N  V  T  A  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  *  A  I  S  K  I  M  K  S  T  *  V  L  L  P  I  K  V  I  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  V  S  S  N  S  Q  C  K  L  R  P  V  A  N  E  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  V  M  Q  S  </second_frame>
            <third_frame>   D  L  S  Q  A  W  P  M  S  Q  L  W  H  Y  N  L  R  L  Q  S  L  E  K  A  K  S  Y  P  E  L  H  R  N  K  P  F  L  R  *  *  S  L  H  E  Y  C  S  P  *  K  S  *  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  Q  M  R  K  I  H  M  K  M  W  S  Q  D  Q  I  I  Q  K  S  C  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29850" stop="29659"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPIKVIRQDLYTFSTITDSPTGVETRIGVSSNSQCKLRPVANEEDTYENVEPGSNNTEVMQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="29680" PGL_stop="30319"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29680" e_stop="30319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="29680" e_stop="30319" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29680" stop="30319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTGATCCTGGCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACACGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTATGACTTTTATGGGGAGCAATACTCATGTAGACTTCATTATCTTAGAAATGGCTTATTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAACTTTGCAATCTTAGATTGTAATGCCAAAGCTGTGACATTGGCCAAGCCTGGGAAAGATCCGCTAGTATGGGAGGGTGACTATACTTCCACCCCAGTTCATATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCGTGCAGACCTTCTTGGTATGCCACCGGATAGGGATATCGACTTTTGCATTGATCTGGAGTCGGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAAGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAGGCAAAGGCTTCATT</gDNA_template>
            <first_frame> I  *  S  W  L  H  I  F  I  C  I  F  L  I  C  Y  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  Y  D  F  Y  G  E  Q  Y  S  C  R  L  H  Y  L  R  N  G  L  F  R  C  N  S  G  Y  D  L  A  F  S  K  L  C  N  L  R  L  *  C  Q  S  C  D  I  G  Q  A  W  E  R  S  A  S  M  G  G  *  L  Y  F  H  P  S  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  F  L  G  T  S  Q  G  *  Y  Y  P  S  T  F  N  *  V  G  F  D  S  P  *  V  S  G  C  V  S  C  R  P  S  W  Y  A  T  G  *  G  Y  R  L  L  H  *  S  G  V  G  Y  S  P  H  F  H  T  P  L  *  N  G  S  R  *  V  K  G  V  K  G  P  T  S  R  V  V  R  Q  R  L  H  </first_frame>
            <second_frame>  F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  L  N  L  H  C  E  L  L  D  T  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  M  T  F  M  G  S  N  T  H  V  D  F  I  I  L  E  M  A  Y  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  A  V  T  L  A  K  P  G  K  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  H  I  I  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  V  F  R  A  D  L  L  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  S  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  K  E  L  K  A  Q  L  Q  E  L  L  G  K  G  F  I </second_frame>
            <third_frame>   L  I  L  A  P  H  F  H  M  Y  L  P  H  L  L  L  V  L  I  Y  I  V  N  C  L  T  R  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  L  L  W  G  A  I  L  M  *  T  S  L  S  *  K  W  L  I  S  M  *  F  W  V  *  L  G  F  L  Q  T  L  Q  S  *  I  V  M  P  K  L  *  H  W  P  S  L  G  K  I  R  *  Y  G  R  V  T  I  L  P  P  Q  F  I  S  S  P  F  F  V  L  R  E  W  L  V  R  V  V  *  L  S  W  H  I  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  W  M  C  F  V  Q  T  F  L  V  C  H  R  I  G  I  S  T  F  A  L  I  W  S  R  V  L  A  P  F  P  Y  P  L  I  E  W  L  P  L  S  *  R  S  *  R  P  N  F  K  S  C  *  A  K  A  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29681" stop="30319"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFATGLNLHCELLDTPIRVSTPVGESVIVEKVYRSCLMTFMGSNTHVDFIILEMAYFDVILGMTWLSPNFAILDCNAKAVTLAKPGKDPLVWEGDYTSTPVHIISFLRAKRMVSKGCLAFLAHLRDDTTQVPSIESVSIVREFLDVFRADLLGMPPDRDIDFCIDLESGTRPISIPPYRMAPAELKELKAQLQELLGKGFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="45800" PGL_stop="45298"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45800" e_stop="45298"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="45800" e_stop="45298" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45800" stop="45298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602116" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCTTTTATTTGAATTAAAACTTGATAGAAAAAACATCTTCCAAGGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGATGCTGATCTTTGCTTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCTTTGATCACGACGTTGCAAACTTTCCCCTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCATCTGAGATCTCATCAATATTGCCTCCCATGAAACCTGCTGATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTACTTATACCCCAAACCAAAAGTAGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGCAATTCAGCCCCCAAACCTTTTCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTAAACCAAGGTTGCAACTCAATATTACC</gDNA_template>
            <first_frame> T  L  L  F  E  L  K  L  D  R  K  N  I  F  Q  G  Y  P  D  A  R  R  G  L  D  G  V  E  V  Q  L  L  M  L  I  F  A  S  L  L  P  L  G  P  P  F  S  S  S  L  I  T  T  L  Q  T  F  P  S  S  L  V  S  D  N  P  F  K  S  S  E  I  S  S  I  L  P  P  M  K  P  A  D  R  N  D  *  Y  N  G  G  M  G  F  F  N  G  *  *  Y  P  S  L  G  G  R  Q  S  S  H  S  S  V  V  Y  L  Y  P  K  P  K  V  V  E  C  R  T  G  C  I  G  S  T  I  P  C  N  S  A  P  K  P  F  P  S  S  K  P  N  Q  A  I  I  S  M  I  F  W  L  N  Q  G  C  N  S  I  L   </first_frame>
            <second_frame>  L  F  Y  L  N  *  N  L  I  E  K  T  S  S  K  A  T  Q  M  L  D  E  V  W  M  E  S  R  S  S  C  *  C  *  S  L  L  P  C  F  H  *  G  P  L  S  P  P  L  *  S  R  R  C  K  L  S  P  L  L  W  L  A  I  T  P  S  S  H  L  R  S  H  Q  Y  C  L  P  *  N  L  L  I  E  M  I  D  T  M  A  V  W  V  S  S  M  D  S  S  T  H  L  *  V  V  A  N  R  A  I  L  R  W  C  T  Y  T  P  N  Q  K  *  W  N  V  E  Q  A  V  *  V  R  L  S  L  A  I  Q  P  P  N  L  F  Q  A  R  N  R  T  R  P  S  Y  L  *  F  F  G  *  T  K  V  A  T  Q  Y  Y  </second_frame>
            <third_frame>   S  F  I  *  I  K  T  *  *  K  K  H  L  P  R  L  P  R  C  S  T  R  S  G  W  S  R  G  P  V  A  D  A  D  L  C  F  L  A  S  T  R  A  P  F  L  L  L  F  D  H  D  V  A  N  F  P  L  F  F  G  *  R  *  P  L  Q  V  I  *  D  L  I  N  I  A  S  H  E  T  C  *  S  K  *  L  I  Q  W  R  Y  G  F  L  Q  W  I  V  V  P  I  S  R  W  S  P  I  E  P  F  F  G  G  V  L  I  P  Q  T  K  S  S  G  M  S  N  R  L  Y  R  F  D  Y  P  L  Q  F  S  P  Q  T  F  S  K  L  E  T  E  P  G  H  H  I  Y  D  F  L  A  K  P  R  L  Q  L  N  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45800" stop="45540"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLLFELKLDRKNIFQGYPDARRGLDGVEVQLLMLIFASLLPLGPPFSSSLITTLQTFPSSLVSDNPFKSSEISSILPPMKPADRND*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45543" stop="45298"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIQWRYGFLQWIVVPISRWSPIEPFFGGVLIPQTKSSGMSNRLYRFDYPLQFSPQTFSKLETEPGHHIYDFLAKPRLQLNIT</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0058F07.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45503" stop="45300"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPSLGGRQSSHSSVVYLYPKPKVVECRTGCIGSTIPCNSAPKPFPSSKPNQAIISMIFWLNQGCNSIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 117 chains have been computed
$ 
$ memory statistics:
$ 72504 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 3816 bytes was the average size of a spliced alignment
$ 21088 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1506 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 147 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:37:02
-->
