<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:47:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592109" ref_strand="-" ref_description="SGN-U592109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=5e-59) Putative; ">
      <seq>ggaaaagggatgagttcttgancctatagcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0100L14.1" temp_strand="+" temp_description="C00SLm0100L14.1  CU914758.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0100L14 sequenced_by:sanger upload_account_name:uk">
        <position start="1283" stop="3356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1583" g_stop="1797" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1798" i_stop="2541" i_length="744">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2542" g_stop="3056" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="723" r_length="508" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0100L14.1" gen_strand="+" ref_id="SGN-U592109" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0100L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1583" e_stop="1797"/>
          <exon e_start="2542" e_stop="3056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCATGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAGATAGCGGCAACGACAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACTACAACATCGACATAAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCCTATGCTTGACTCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGACTGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACTACCTCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACACTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTATTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATGGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTCTTGTAACTTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATTTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTAGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCATATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTAGTCCGCGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGCATAGACTACAG</genome_strand>
        <mrna_strand>GGAAAAGGGATGAGTTCTTGANCCTATAGCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0100L14.1" temp_strand="-" temp_description="C00SLm0100L14.1  CU914758.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0100L14 sequenced_by:sanger upload_account_name:uk">
        <position start="2936" stop="2012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2637" g_stop="2312" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0100L14.1" gen_strand="-" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0100L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2637" e_stop="2312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAAATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACCATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0100L14.1" temp_strand="-" temp_description="C00SLm0100L14.1  CU914758.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0100L14 sequenced_by:sanger upload_account_name:uk">
        <position start="5193" stop="4101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4893" g_stop="4401" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0100L14.1" gen_strand="-" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0100L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4893" e_stop="4401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATATGATATGATGGATAGTGGAACCCCATGCAATCGCACCACTTCCGAGATGTAAAGTTTGGCTAACTTTTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGATTTAGTTAACCTATCAACAATTACCCAAATAGAATCAAACTTTCCCAAAGTCTTGGGAAGACCAACCACAAAATCCATTGCAATTCTTTCCCACTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATGTCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTCGAACTATGAGCCTCTATCAGAATAGTGTTGATCAAATCATCGACGCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599718" ref_strand="+" ref_description="SGN-U599718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205427|gb|ABI34389.1| (e_value=5e-23) Polyprotein,; ">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0100L14.1" temp_strand="-" temp_description="C00SLm0100L14.1  CU914758.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0100L14 sequenced_by:sanger upload_account_name:uk">
        <position start="5408" stop="4631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5108" g_stop="4932" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0100L14.1" gen_strand="-" ref_id="SGN-U599718" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0100L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5108" e_stop="4932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTGCCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599792" ref_strand="+" ref_description="SGN-U599792 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tattgtaanccctactatatgcttaattgtatgtttgcntgantatgattatgtgattgtgataagataaacatgatgaaaatattgaatcccaaatcttgaaaggaaactttaatatacnttattaatgatgatgccttggtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0100L14.1" temp_strand="+" temp_description="C00SLm0100L14.1  CU914758.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0100L14 sequenced_by:sanger upload_account_name:uk">
        <position start="6148" stop="6893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6448" g_stop="6593" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0100L14.1" gen_strand="+" ref_id="SGN-U599792" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>146</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0100L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6448" e_stop="6593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAAACCCTACTATATGCTTAATGGTATGTTTGTATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATA</genome_strand>
        <mrna_strand>TATTGTAANCCCTACTATATGCTTAATTGTATGTTTGCNTGANTATGATTATGTGATTGTGATAAGATAAACATGATGAAAATATTGAATCCCAAATCTTGAAAGGAAACTTTAATATACNTTATTAATGATGATGCCTTGGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590682" ref_strand="+" ref_description="SGN-U590682 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-28) Polyprotein,; ">
      <seq>ccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcggtgactcctccacctactgaagaagtaataagagaaggggaagatggggagaatgaacaagtgcaaaatgaggaattgccaccccagcctaccccagagatgataaatcaggtgctagcttatctgagtaggttgtctaatcaaggtcaagcacctccagtgtcttctgcaccaacacctccggtttcagaggtacaacatgcagccactatggctcctcgtatggatgcctcattagatataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggttcggtgttgagttcgtgagttatcaatttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcctcattttctagtttgnttatggagaagtatatcccccggactttgaggganaggaaaagggatgagtttttgagcctagagcaaggtannatgtcggtcaatgcatangangctaagtttcgtgcactatccnnatntgccactcaactttgtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0100L14.1" temp_strand="+" temp_description="C00SLm0100L14.1  CU914758.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0100L14 sequenced_by:sanger upload_account_name:uk">
        <position start="100089" stop="101415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100389" g_stop="101117" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0100L14.1" gen_strand="+" ref_id="SGN-U590682" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0100L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100389" e_stop="101117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGGTAGAGGTTGTGGGAGGACGTCCTCTAGAGGAAGAGGACAAACACCTAGCTCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAAGAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTGTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTTAAGGGTGCTGAATGTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACAGTAGATGGGTATAGTAGAACGGTTTGGTGTTAAGTTCGTAAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATACCCCGAACATTGATGGATAGGAAAAGAGGTGAATTTTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCCTGCATTATCCCG</genome_strand>
        <mrna_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCTACTGAAGAAGTAATAAGAGAAGGGGAAGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTAGCTTATCTGAGTAGGTTGTCTAATCAAGGTCAAGCACCTCCAGTGTCTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTTTCTAGTTTGNTTATGGAGAAGTATATCCCCCGGACTTTGAGGGANAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTANNATGTCGGTCAATGCATANGANGCTAAGTTTCGTGCACTATCCNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590648" ref_strand="+" ref_description="SGN-U590648 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-17) Polyprotein,; ">
      <seq>gcacctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0100L14.1" temp_strand="+" temp_description="C00SLm0100L14.1  CU914758.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0100L14 sequenced_by:sanger upload_account_name:uk">
        <position start="100136" stop="101290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100435" g_stop="100990" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0100L14.1" gen_strand="+" ref_id="SGN-U590648" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0100L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100435" e_stop="100990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTAGCTCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAAGAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTGTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTTAAGGGTGCTGAATGTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACAGTAGATGGGTATAGTAGAACGGTTTGGTGTTAAGTTCGTAAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>GCACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0100L14.1" temp_strand="-" temp_description="C00SLm0100L14.1  CU914758.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0100L14 sequenced_by:sanger upload_account_name:uk">
        <position start="102222" stop="100805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101918" g_stop="101109" g_length="810"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="862" r_length="810" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0100L14.1" gen_strand="-" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0100L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101918" e_stop="101109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACAAATCGGCGGTAATAGCTAGTTAAACCAACAACGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATTCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCTTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCACGGGAGCCATACTATAAGGGGTTATAGAAATGGGGAGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTAGCATACCGGGATAAT</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592141" ref_strand="+" ref_description="SGN-U592141 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctggcactgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0100L14-sRa1a/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0100L14.1" temp_strand="-" temp_description="C00SLm0100L14.1  CU914758.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0100L14 sequenced_by:sanger upload_account_name:uk">
        <position start="105937" stop="6632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105637" g_stop="105310" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0100L14.1" gen_strand="-" ref_id="SGN-U592141" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0100L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105637" e_stop="105310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTAGGAATTATGTTCATTAGATTGAGTGTATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAGTCCTCTTGTGTCGGTACGTGACACTCCGATCGCCTACATCTACGTGTCAGTTC</genome_strand>
        <mrna_strand>CTGGCACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1583" PGL_stop="3056"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1583" e_stop="1797"/>
            <exon e_start="2542" e_stop="3056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.888"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.888">
            <gDNA_exon_boundary e_start="1583" e_stop="1797" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1798" i_stop="2541" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="2542" e_stop="3056" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1583" stop="1797"/>
              <exon start="2542" stop="3056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCATGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAGATAGCGGCAACGACAAAATCCTTCCAAGAAGTGGTAGACTTT : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATTTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTAGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCATATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTAGTCCGCGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGCATAGACTACAG</gDNA_template>
            <first_frame> G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  L  M  L  M  R  L  S  F  M  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  G  F  A  G  L  *  R  G  *  G  Q  N  C  R  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  K  W  *  T  L :   M  *  F  W  V  *  L  G  F  L  R  N  L  Q  F  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  F  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  L  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  *  S  A  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  S  I  L  N  R  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  Q  F  C  L  *  R  R  R  M  G  V  F  E  C  A  *  T  T  </first_frame>
            <second_frame>  E  K  G  *  V  P  E  P  R  A  R  *  D  V  G  *  C  L  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  D  K  I  L  P  R  S  G  R  L   : *  C  N  S  G  Y  D  L  A  F  S  A  I  C  N  F  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  L  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  *  C  *  E  N  G  *  *  R  V  F  S  F  L  G  I  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  S  P  R  V  F  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  R  S  *  T  G  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  K  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  S  F  V  C  E  E  E  G  W  E  F  S  N  V  H  R  L  Q </second_frame>
            <third_frame>   K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  H  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  Q  I  S  A  L  Q  I  A  A  T  T  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  S  A  K  K  M  V  S  K  G  C  L  A  F  L  A  Y  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0100L14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1585" stop="1797"/>
                    <exon start="2542" stop="3054"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRDEFLSLEQGRMSVNAYEAKFHALSRYATQLCFSPQERIRRFVKGLRSELQISALQIAATTKSFQEVVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLSAKKMVSKGCLAFLAYLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="2637" PGL_stop="2312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2637" e_stop="2312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="2637" e_stop="2312" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2637" stop="2312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAAATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACCATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCAC</gDNA_template>
            <first_frame> R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  N  C  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  S  Y  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  K  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  *  Y  R  S  H  A  I   </first_frame>
            <second_frame>  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  R  N  S  P  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  </second_frame>
            <third_frame>   D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  K  L  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  K  L  Q  D  K  T  Y  T  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  E  I  H  H  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  I  I  Q  K  P  C  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0100L14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="4893" PGL_stop="4401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4893" e_stop="4401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="4893" e_stop="4401" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4893" stop="4401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATATGATATGATGGATAGTGGAACCCCATGCAATCGCACCACTTCCGAGATGTAAAGTTTGGCTAACTTTTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGATTTAGTTAACCTATCAACAATTACCCAAATAGAATCAAACTTTCCCAAAGTCTTGGGAAGACCAACCACAAAATCCATTGCAATTCTTTCCCACTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATGTCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTCGAACTATGAGCCTCTATCAGAATAGTGTTGATCAAATCATCGACGCGGGGT</gDNA_template>
            <first_frame> T  Q  F  R  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  *  W  N  P  M  Q  S  H  H  F  R  D  V  K  F  G  *  L  F  C  I  V  S  H  L  D  R  N  E  M  S  R  F  S  *  P  I  N  N  Y  P  N  R  I  K  L  S  Q  S  L  G  K  T  N  H  K  I  H  C  N  S  F  P  L  P  F  R  N  G  H  S  L  K  C  S  S  G  P  L  V  F  I  L  Y  L  L  T  V  W  T  F  G  N  K  I  H  N  V  T  L  H  S  T  P  P  K  V  L  L  *  V  T  V  H  L  G  C  T  R  M  Y  R  I  P  R  T  M  S  L  Y  Q  N  S  V  D  Q  I  I  D  A  G  </first_frame>
            <second_frame>  P  N  S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  Y  D  M  M  D  S  G  T  P  C  N  R  T  T  S  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  I  E  S  N  F  P  K  V  L  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  L  A  I  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  I  R  I  V  L  I  K  S  S  T  R  G </second_frame>
            <third_frame>   P  I  P  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  M  I  *  W  I  V  E  P  H  A  I  A  P  L  P  R  C  K  V  W  L  T  F  L  H  C  K  S  P  *  P  E  *  N  E  Q  I  *  L  T  Y  Q  Q  L  P  K  *  N  Q  T  F  P  K  S  W  E  D  Q  P  Q  N  P  L  Q  F  F  P  T  S  I  P  E  W  A  F  S  E  V  F  L  R  A  F  G  V  H  T  L  L  V  D  S  L  D  I  W  Q  *  N  P  Q  C  H  A  S  F  Y  S  T  K  S  V  A  L  G  H  G  T  S  W  L  H  P  D  V  S  N  T  S  N  Y  E  P  L  S  E  *  C  *  S  N  H  R  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0100L14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4719" stop="4495"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNYPNRIKLSQSLGKTNHKIHCNSFPLPFRNGHSLKCSSGPLVFILYLLTVWTFGNKIHNVTLHSTPPKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="5108" PGL_stop="4932"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5108" e_stop="4932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="5108" e_stop="4932" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5108" stop="4932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTGCCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  C  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  I  P  L  R  V  G  S  Y  P  N  D  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  A  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  F  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  P  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0100L14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="6448" PGL_stop="6593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6448" e_stop="6593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="6448" e_stop="6593" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6448" stop="6593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGTAAACCCTACTATATGCTTAATGGTATGTTTGTATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATA</gDNA_template>
            <first_frame> Y  C  K  P  Y  Y  M  L  N  G  M  F  V  *  I  *  L  C  D  C  D  K  I  S  M  M  K  I  L  N  P  K  S  *  K  E  T  L  I  Y  I  I  N  D  D  A  L  V   </first_frame>
            <second_frame>  I  V  N  P  T  I  C  L  M  V  C  L  Y  E  Y  D  Y  V  I  V  I  R  *  A  *  *  K  Y  *  I  P  N  L  E  K  K  L  *  Y  T  L  L  M  M  M  P  W  Y  </second_frame>
            <third_frame>   L  *  T  L  L  Y  A  *  W  Y  V  C  M  N  M  I  M  *  L  *  *  D  K  H  D  E  N  I  E  S  Q  I  L  K  R  N  F  N  I  H  Y  *  *  *  C  L  G  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0100L14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="100389" PGL_stop="101117"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100389" e_stop="101117"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="100389" e_stop="101117" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100389" stop="101117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100435" stop="100990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTGGTAGAGGTTGTGGGAGGACGTCCTCTAGAGGAAGAGGACAAACACCTAGCTCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAAGAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTGTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTTAAGGGTGCTGAATGTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACAGTAGATGGGTATAGTAGAACGGTTTGGTGTTAAGTTCGTAAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATACCCCGAACATTGATGGATAGGAAAAGAGGTGAATTTTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCCTGCATTATCCCG</gDNA_template>
            <first_frame> P  W  *  R  L  W  E  D  V  L  *  R  K  R  T  N  T  *  L  I  *  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  G  *  G  R  G  E  *  R  S  A  K  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  G  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  *  G  C  *  M  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  V  D  G  Y  S  R  T  V  W  C  *  V  R  K  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I  L  *  L  V  Y  G  E  V  Y  T  P  N  I  D  G  *  E  K  R  *  I  F  E  P  R  A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  P </first_frame>
            <second_frame>  R  G  R  G  C  G  R  T  S  S  R  G  R  G  Q  T  P  S  S  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  E  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  C  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  C  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  Q  *  M  G  I  V  E  R  F  G  V  K  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  M  D  R  K  R  G  E  F  L  S  L  E  Q  G  R  M  S  V  T  A  Y  E  A  K  F  P  A  L  S   </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  E  E  E  D  K  H  L  A  H  L  I  L  G  R  *  L  L  H  R  L  R  K  *  *  E  R  V  R  K  G  R  M  K  K  C  K  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  L  I  L  V  G  C  L  I  R  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  V  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  L  R  V  L  N  V  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  S  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S  L  A  C  L  W  R  S  I  Y  P  E  H  *  W  I  G  K  E  V  N  F  *  A  *  S  K  V  G  C  R  L  L  H  M  R  L  S  F  L  H  Y  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0100L14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100390" stop="100860"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGCGRTSSRGRGQTPSSSDTRAVTPPPTEEVVREGEEGENEEVQNEELPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDASLDIGTCPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAECEDAYDFLVDCHELLQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0100L14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100861" stop="101115"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGIVERFGVKFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASFSSLFMEKYIPRTLMDRKRGEFLSLEQGRMSVTAYEAKFPALS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="101918" PGL_stop="101109"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101918" e_stop="101109"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="101918" e_stop="101109" e_length="810"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101918" stop="101109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACAAATCGGCGGTAATAGCTAGTTAAACCAACAACGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATTCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCTTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCACGGGAGCCATACTATAAGGGGTTATAGAAATGGGGAGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTAGCATACCGGGATAAT</gDNA_template>
            <first_frame> R  I  P  *  Q  I  G  G  N  S  *  L  N  Q  Q  R  S  L  F  L  T  H  *  *  V  L  P  N  S  L  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  C  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  *  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  S  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  P  L  T  P  R  E  P  Y  Y  K  G  L  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  R  D  N </first_frame>
            <second_frame>  E  S  L  D  K  S  A  V  I  A  S  *  T  N  N  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  Y  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  A  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  P  *  L  H  G  S  H  T  I  R  G  Y  R  N  G  E  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  *  H  T  G  I   </second_frame>
            <third_frame>   N  P  L  T  N  R  R  *  *  L  V  K  P  T  T  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  V  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  F  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  L  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  T  G  A  I  L  *  G  V  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  S  I  P  G  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0100L14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101752" stop="101414"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYVINKYDHKEIQIWLKNPVHQTHERSRGIRKTKRHHYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="105637" PGL_stop="105310"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105637" e_stop="105310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="105637" e_stop="105310" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105637" stop="105310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTAGGAATTATGTTCATTAGATTGAGTGTATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAGTCCTCTTGTGTCGGTACGTGACACTCCGATCGCCTACATCTACGTGTCAGTTC</gDNA_template>
            <first_frame> R  V  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  I  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  C  H  N  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  R  N  Y  V  H  *  I  E  C  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  S  P  L  V  S  V  R  D  T  P  I  A  Y  I  Y  V  S  V  </first_frame>
            <second_frame>  G  Y  *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  L  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  V  I  I  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  V  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  V  L  L  C  R  Y  V  T  L  R  S  P  T  S  T  C  Q  F </second_frame>
            <third_frame>   G  T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  Y  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  M  S  *  S  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  *  E  L  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  R  L  H  L  R  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0100L14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 100 chains have been computed
$ 
$ memory statistics:
$ 215464 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 23940 bytes was the average size of a spliced alignment
$ 13792 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1724 bytes was the average size of a predicted gene location
$ 8 megabytes was the average size of the backtrace matrix
$ 120 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:51:13
-->
