<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:38:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576553" ref_strand="+" ref_description="SGN-U576553 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|217074354|gb|ACJ85537.1| (e_value=4e-39) unknown; (*ATH) AT1G29890.2 (e_value=5e-39)  Symbol: None | similar to O-acetyltransferase-related [Arabidopsis thaliana] (TAIR:At5g46340.1); similar to OSJNBb0035I14.15 [Oryza sativa (japonica cultivar-group)] (GB:NP_917822.1); similar to unknown protein [Oryza sativa (japonica cultivar-group... ; ">
      <seq>gtctcttccgtaaaacctcactaatagttgacaattgatgaagcaatccatcaaaacgacgtcgtttttgaaccttcattgcttcagatctcttcttcttcaccatttctataactgctcatttcaaatcttcttcttatatataaattgctcatttcaaatcttcttcttatatataaattcatcattctcgtaaatatatacatattgatgatacgtttgattttgtatacatatatatattgttgaacaattgaattttgattcggatttggtgaggtattgtttctgttttgtagttgacgatttttgaaaatgccggcggtttctggacctgtaacgccaggacaggtgtcatttttgcttggatatatacctgtcctcatcgcatggatatatgctgagtggttggagtacaagaagtggttgtttccctttaaagttcattcagataataatctggatgaacttgagatctcaacaaccaaggaagaagatcgagctgtcttactggaaggaggtctgtcaaaatctgcatctgtgaagttgtcaagttcatcggtaaaaacaaacataattaggtttttaacaatggaggatgcgtttttgctagaaaatcgtgctactctaagagcaatatctgaatttgggggaatcctgttttattattatctctgtgaccgtacaaatctctttgcanattctactanngttatttgcatcataacaactattnnntcaccttatggaataaaagcatacaagcactttganagctacaatcgtgatctcttcatctttctgnata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="14593" stop="19450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14893" g_stop="15243" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15244" i_stop="17011" i_length="1768">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17012" g_stop="17103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="443" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17104" i_stop="17892" i_length="789">
            <donor d_prob="0.640" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17893" g_stop="18030" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="581" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18031" i_stop="18111" i_length="81">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18112" g_stop="18168" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="638" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18169" i_stop="18247" i_length="79">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18248" g_stop="18320" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="711" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18321" i_stop="18405" i_length="85">
            <donor d_prob="0.910" d_score="0.94"/>
            <acceptor a_prob="0.623" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18406" g_stop="18468" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="774" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18469" i_stop="19116" i_length="648">
            <donor d_prob="0.284" d_score="0.92"/>
            <acceptor a_prob="0.001" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19117" g_stop="19150" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="808" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U576553" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14893" e_stop="15243"/>
          <exon e_start="17012" e_stop="17103"/>
          <exon e_start="17893" e_stop="18030"/>
          <exon e_start="18112" e_stop="18168"/>
          <exon e_start="18248" e_stop="18320"/>
          <exon e_start="18406" e_stop="18468"/>
          <exon e_start="19117" e_stop="19150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTTCCGTAAAACCTCACTAATAGTTGACAATTGATGAAGCAATCCATCAAAACGACGTCGTTTTTGAACCTTCATTGCTTCAGATCTCTTCTTCTTCACCATTTCTATAACTGCTCATTTCAAATCTTCTTCTTATATATAAATTGCTCATTTCAAATCTTCTTCTTATATATAAATTCATCATTCTCGTAAATATATACATATTGATGATACGTTTGATTTTGTATACATATATATATTGTTGAACAATTGAATTTTGATTCGGATTTGGTGAGGTATTGTTTCTGTTTTGTAGTTGACGATTTTTGAAAATGCCGGCGGTTTCTGGACCTGTAACGCCAGGACAGGTGAGTTTTTTTGTATTAATTTGTTGTTGATACAGTATTTGAAATGATTTTTGTTGATGTATTGATGAAAATGTGAGTGTTTTCGAGTGTTTGAAGTGTAATTGGAGCAATTTATGAGTTAAAATGTGGAGAATTTGCACAAATGGGTGTGGTGTGTGGCGTAGTGATCAATGAAAGAGGTTTTAGAACTATGAGGTGTGAGGTTTAAATCTAGCAGAGACAAAAATACTAGATGGTTTCTTTTTATTTGTTTGAGTCTTGGTGGATGGAGTTATGTGATACGTGTTGTTGATGGGAGGTGAGAGGTATGGAATTAGTTGAGCTGTGTGAAAGCTGGCACGAACAGTACAATTGTCAGGAAGAAAATGCTGAATTTTGATATTAGATCAGTGAGATTATGAGGACTAAGGTTTAAACGTAGGTGAAAGCTAGTTGGGACACCACAGTTATCAAAAAAAAAAGAATTTTGATATTAGATCAGTGAGATTATGAGGTCTAAGGTTCAAGCCTAGCTGAGAAGAAAAATAGTAAGTGATTTCTTTCTATTTTTGTTCTAGCCTTAGTGGATGAGTTATCTGGTACATGTTGTTGATAGGAGGTGGTAGGTATGGGATTAGTTGAGGGGTGTGAAAGCTGGCCTGAACACCATAATTATCAAAAGGAAAATGCAGAATTTTGATGTTTCAGATTAGTGAGATGAGCTGATCTGAGCTGTGTCAAATTATAAAGATAATTAGACTTTGTTACGTTCTTGCTCGTGTTTATCACTGGATGACTTTGATAGTTTGATGTGAAGAACTTACTTGATTTGAAAGTACTAGCAATTCTATACAATTGCCATATGAATTTGTTGTTTTCATCACGTTGTTCATGTTTTGATTCTTACTAGTAGAGCTTGACTTCAGAACAGGCTAATTATCTCCTAATCTTACAACATAGGTAGGGTTTGAATTATGAGTGAAAAAAACTGAGTTAACTGCCTAGGCTCGATGGTCAACTACTGACGAAATACGAGTTCAGCTTGTGTTATGTAGATTCTCTGTGCTGTTCATTTCTTTGAAGGACAAAGATTTTCATCATAGATTTTGATTCAGTATGAATAACTTAGGTTTTCATTCATTTTGGTACCTGAAAACTCTCAGGTTTATCTATCTGTCTGATTTTAAGGGAAATTTGGGTGAGTAACTCACATAGGTAGTGAATAGATATATTTGAGGTGTGTGTGAATTGATCATGTTGTGCAGGATTTTACAATTGTTGGCTAGATATAAGTGTTTTAACAACTTTCCTCTGCTAGGAAAAGCGCTTAGCACTCCTTAAATGAATTCTTGACATCACATAGAGCAAAAGTTGAAGTAGGTGCTTGATGTCTGATTTATGACAGCATGTTTTCTTTACGGCTGACACAGTTACAATTATATAGCATTACTGAATCTCAGATCTCTCATTTGTGACATCCAATAAGATCATATCTCATTTGCAAATTTCAGAGTGCTTTTTTCCTTACATTTCCTTTTGAGTTTATTTGCCTTGTATTGGATTAAGGTTCGGGTGTCAGAAATAAGTTGCTATCTGTATATTGTGGAATTTGGTCATTCTGAAATTTTTCTTTCACAGTTTGTTTGGTCTAGCATGTACCTGCATTTTAAGGTTTCAATGCACCTGTACTGCTGCTACTATGTGGAACATCTTGTTTTGCTTTATTTGTTATGCTCTTGAGGAAATCATGCGTAGATATCTACTGAAGCCTACCCTTGTCATGTCTCAGGTGTCATTTTTGCTTGGATATATACCTGTCCTCATCGCATGGATATATGCTGAGTGGTTGGAGTACAAGAAGTGGTTGTTTCCCTTTAAAGTGTAAGTTAATCCATCCATTCACCATCCAAAAGAAAAAGGAAAAAACTGAAAACTCATATATCCTCATGCTGCAGCTAGATTTTCTGAGACATGCTAAGACAGTTGTAGCATTTGTGCGCTTCCTTTAAGTCGCTTGCCAAATCCTATCGAATGGCTTTATTTTAGAAAAAAAAAACAGAATTGGATTTAATGTGTGAACAAATCTCGTCTGGATAACACAAACAAATGTTATGTTATACATTTGCTACAAAATGTTGGTGGATAATATAGAGTCAACAATGTTGAAAATAGTGTGTGGGGAATATGAATGCTATATTATATTATATTTTAATAAGATATTTCATTAATGCTTGGGTCAAACTCGTCTGTACACAAGTACAACAACAACAACACACCAAGTGTAATCCCACAAGTGGGTCTGGGGAGGGTGGTGTGTGCGCAAACCCTGCCCCTACCTTGTGGAGGTAGCGAGACTGTTTCTAATAGACCCTCGACTCCAGTTTGTATACAAGTAATATACCAAAAAAATAGAAAGACTGACTGTGTAATTATCACTACTATTGTTCTTGTTAGTATTATTATTTTAAAAAGAGTGAACTTCTTGAAATTGAAGCATCTATTTTATGCCTTTGCAAAATTGAATTTTTAATTAAGGACAAAAAGTTTCTTTGGGCATCTTGATTTTAAGCACTGTAAAGATTGTTTTGTGTAGGCGATAATTTATCCAGGGATATTACTTAATCTGCTATAAGTGTTCTATTTGTATGGCTGACTTTTTCATGCCAACAGTCATTCAGATAATAATCTGGATGAACTTGAGATCTCAACAACCAAGGAAGAAGATCGAGCTGTCTTACTGGAAGGAGGTCTGTCAAAATCTGCATCTGTGAAGTTGTCAAGTTCATCGGTAAAAACAAACATAATTAGGTGAGTGTGCTACATTCAATTTGCTGAATATTCTACTTTTAAGTTCGTGAATCTTTCCTTAGCATTTTCACATATTTGTAGGTTTTTAACAATGGAGGATGCGTTTTTGCTAGAAAATCGTGCTACTCTAAGAGCAATGTGAGTCACTTGGATATTTTGAATATGGTGCATATAGCATCTCATCTAATTTTAAAATCCTTCTTATGATCTCATACAGATCTGAATTTGGGGGAATCCTGTTTTATTATTATCTCTGTGACCGTACAAATCTCTTTGCAGATTCTACTAAGGTGTGTGATCTTCTCTTCCTGTAACTATGTATAAAGATTTGATTTGCTAAGGTTGTGCTGTGTGATATTTGTTTCTAATTGCAAGGTTATTTGCATCATAACAACTATTGGATCACCTTATGGAATAAAAGCATACAAGCACTTTGAGGTGCAATCGAATAACCAGGGATTTACATATTCATTCGAAATATATGCTAAGCCAGTTCAGACAAAATGACTTGTTACTTCTGATTCTTCTCTGTGCATCATGAACTCCTGAACCTTGTTGTCTTGATTGAACTCTTGGAATTGCATCTTCTTTAACATAATTTTATCGTGTTGTCTTCTAAGTTTAGGTCATGTATAACAAACTTTGCTATAAAGTATTGATACAATACACTAGCATATGATAAGCATGCTTGTGTCTAAACCTTATTCCTTTTCATAGGATTGGATTATTTGATTCTCAAAATTGATGATTGTTCTTGTGGCGAACTGTAATGATCTTAGTAAATTTTTTCATGTTTCACTCAGTCTAAATTCTTTACAAGCAAGTAATCATTTACATTATGGATAATTTAGTTTCAATGTCTATGCCTTCTGTTACCCCCTTCCCCGTAATTATGAGGGTATGGAGGGGCAAATATGAACTGTGATAGTTGACTAGTTCTATTGGGCTTGATCTTCGAATATCTCTGTGCTGCTGCAACTTTTGTTTGTATGTGAAACACATTGCTGAGACCTCTAAGATTCTTTTTTATCATCCATGAGACGAGCACTCTGTAACAGGTTTTTGCGTGATGTTTTCTTTGAACAGAGCTACAATCGTGATCTCTTCATCTTTCTGTATA</genome_strand>
        <mrna_strand>GTCTCTTCCGTAAAACCTCACTAATAGTTGACAATTGATGAAGCAATCCATCAAAACGACGTCGTTTTTGAACCTTCATTGCTTCAGATCTCTTCTTCTTCACCATTTCTATAACTGCTCATTTCAAATCTTCTTCTTATATATAAATTGCTCATTTCAAATCTTCTTCTTATATATAAATTCATCATTCTCGTAAATATATACATATTGATGATACGTTTGATTTTGTATACATATATATATTGTTGAACAATTGAATTTTGATTCGGATTTGGTGAGGTATTGTTTCTGTTTTGTAGTTGACGATTTTTGAAAATGCCGGCGGTTTCTGGACCTGTAACGCCAGGACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCATTTTTGCTTGGATATATACCTGTCCTCATCGCATGGATATATGCTGAGTGGTTGGAGTACAAGAAGTGGTTGTTTCCCTTTAAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTCAGATAATAATCTGGATGAACTTGAGATCTCAACAACCAAGGAAGAAGATCGAGCTGTCTTACTGGAAGGAGGTCTGTCAAAATCTGCATCTGTGAAGTTGTCAAGTTCATCGGTAAAAACAAACATAATTAG.................................................................................GTTTTTAACAATGGAGGATGCGTTTTTGCTAGAAAATCGTGCTACTCTAAGAGCAAT...............................................................................ATCTGAATTTGGGGGAATCCTGTTTTATTATTATCTCTGTGACCGTACAAATCTCTTTGCANATTCTACTANN.....................................................................................GTTATTTGCATCATAACAACTATTNNNTCACCTTATGGAATAAAAGCATACAAGCACTTTGAN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTACAATCGTGATCTCTTCATCTTTCTGNATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566796" ref_strand="+" ref_description="SGN-U566796 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|217074356|gb|ACJ85538.1| (e_value=7e-99) unknown; (*ATH) AT2G34410.2 (e_value=2e-95)  Symbol: None | similar to O-acetyltransferase-related [Arabidopsis thaliana] (TAIR:At5g46340.1); similar to acetyltransferase-related [Arabidopsis thaliana] (TAIR:At1g29890.1); similar to OSJNBb0035I14.15 [Oryza sativa (japonica cultivar-group)] (GB... ; (*SWP) sp|Q96PB1|CASD1_HUMAN (e_value=6e-21) CAS1 domain-containing protein 1 OS=Homo sapiens GN=CASD1; ">
      <seq>tttatatctgggcttgaccgctatatatggattattggcatgatatatgcctattttcacccaaatgttgagaagttgatggagaaactggaggagtctgaaccaaagcggagacggacaattaagtcaaccatctgtgcagtaactttaattgttgggtacttgtggtttgaatacatctacaagcttgacaagacagcttacaataaactccacccctacacgtcatggattcctattactgtatacatatgcttgcgtaatttgactcaggagctgcggaatttctctctgacactctttgcgtggcttgggaaaattaccttagaaacctacatctcccagttccacatctggctgagatcaaatatgccaaatggacagcctaaatggctcctttcatttatcccgggctatcctatgcttaatttcatgctgactacagcaatttatgtactgctatcatgtaggctttttgaactaaccaacacactcaaatccgttttcgtacccacaagagacaatcagaagctgctccacaactttattgctggtgtcgcaatttctctgtgtttatacatcatttcctttatccttattcaaatccctcattaatgaaaccatttatctggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="20474" stop="22588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20774" g_stop="20839" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20840" i_stop="20929" i_length="90">
            <donor d_prob="0.523" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20930" g_stop="21016" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="153" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21017" i_stop="21113" i_length="97">
            <donor d_prob="0.153" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21114" g_stop="21202" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="242" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21203" i_stop="21398" i_length="196">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21399" g_stop="21461" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="305" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21462" i_stop="21650" i_length="189">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21651" g_stop="21707" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="362" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21708" i_stop="21814" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21815" g_stop="21911" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="459" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21912" i_stop="21998" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21999" g_stop="22157" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="618" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="22158" i_stop="22271" i_length="114">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="22272" g_stop="22288" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="635" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U566796" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20774" e_stop="20839"/>
          <exon e_start="20930" e_stop="21016"/>
          <exon e_start="21114" e_stop="21202"/>
          <exon e_start="21399" e_stop="21461"/>
          <exon e_start="21651" e_stop="21707"/>
          <exon e_start="21815" e_stop="21911"/>
          <exon e_start="21999" e_stop="22157"/>
          <exon e_start="22272" e_stop="22288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGATCTGGGCTTGACCGCTATATATGGATTATTGGCATGATATATGCCTATTTTCACCCAAATGTAATTCCAAAGAACTTTGCATTTTCGTTGTTTGTCCAACTTTTCTTCCTCTTCCATGGTACTGAAGTTTGCAGTATCTTGTCCTTTTAGGTTGAGAAGTGGATGGAGAAACTGGAGGAGTCTGAACCAAAGCGGAGACGGACAATTAAGTCAACCATCTGTGCAGTAACTTTAATTGTGAGTTGCATTTAAGTTCATCAGATAGTAAAATCAGGTGTTGCAAATTATCTTTTTATTTTATGAAGTTTGTCATTTGGGAGACTGTATTCCTCAGGTTGGGTACTTGTGGTTTGAATACATCTACAAGCTGGACAAGACAGCTTACAACAAACTCCACCCCTACACGTCATGGATTCCTATTACGTATGTTTTTAGCTTTTCTAGTTCTCTTTTATCTGTTGATTTTACACGAAACTTATACTAATGTAAATTACTGCTGTTTGTTTGATTTGAAAACGAACAGTAAAAAGGTCCCTGCTTGCCTATAATGTACTTAAACCAAAGTTTGTCTCCTGAATGTCTTGTATTATTTTTCTCATTTGCTTTCTTTGCCTCACAGTGTATACATATGCTTGCGTAATTTGACTCAGGAGCTGCGGAATTTCTCTCTGACACTCTTTGCGTAAGTTTCTAAACCATTTGTCTACCCGATCATGTCTTTCCTTTTTTGCTAATGCCTTTTAAATCATCCTTCACTTAGTTTTGATACTAACAGTTAAGCTCTACAGAATTAAAGATCTTTATTTGTTCTTCTTAAATAAGTTGAATCTACTTTGATTTCTCCTTGTCTAACTGTGGTCTGTTACTGTAGGTGGCTTGGGAAAATTACCTTAGAAACCTACATCTCCCAGTTCCACATCTGGCTGAGGTATGTTCATTTCAATTTTCTTCTTAAGGCTGAGGTATGTTCGAGAACTTACTTTTTTTTTACTTACATGCTACGAGGACTTATTGCTTTCTGACTATTATCTGTAGATCAAATATGCCAAATGGACAGCCTAAATGGCTCCTTTCATTTATCCCGGGCTATCCTATGCTTAATTTCATGCTGACTACAGCAATTTATGTACTGGTAAGCATATATACTCTTTTCAATTTTGAGTCGTAAACCATTTTTTCTCCTGGTAGGTTCTATCTAAACATTTCTTGCTTATTGCAGCTATCATGTAGGCTTTTTGAACTAACCAACACACTCAAATCCGTTTTCGTACCCACAAGAGACAATCAGAAGCTGCTCCACAACTTTATTGCTGGTGTCGCGATTTCTCTGTGTTTATACATCATTTCCTTTATCCTTATTCAAATCCCTCATTAATGAGTAAGTTTGTTATCCCATTTTCCTATTTGCTATGCACAACATCCTAAAATTCAGAAAAACTGCTAATCTTGTAGCACACATACTTACTTTGCGCGTTAATTATTTTTTTTGTAGAACCATTTATCTGGACT</genome_strand>
        <mrna_strand>TTTATATCTGGGCTTGACCGCTATATATGGATTATTGGCATGATATATGCCTATTTTCACCCAAAT..........................................................................................GTTGAGAAGTTGATGGAGAAACTGGAGGAGTCTGAACCAAAGCGGAGACGGACAATTAAGTCAACCATCTGTGCAGTAACTTTAATT.................................................................................................GTTGGGTACTTGTGGTTTGAATACATCTACAAGCTTGACAAGACAGCTTACAATAAACTCCACCCCTACACGTCATGGATTCCTATTAC....................................................................................................................................................................................................TGTATACATATGCTTGCGTAATTTGACTCAGGAGCTGCGGAATTTCTCTCTGACACTCTTTGC.............................................................................................................................................................................................GTGGCTTGGGAAAATTACCTTAGAAACCTACATCTCCCAGTTCCACATCTGGCTGAG...........................................................................................................ATCAAATATGCCAAATGGACAGCCTAAATGGCTCCTTTCATTTATCCCGGGCTATCCTATGCTTAATTTCATGCTGACTACAGCAATTTATGTACTG.......................................................................................CTATCATGTAGGCTTTTTGAACTAACCAACACACTCAAATCCGTTTTCGTACCCACAAGAGACAATCAGAAGCTGCTCCACAACTTTATTGCTGGTGTCGCAATTTCTCTGTGTTTATACATCATTTCCTTTATCCTTATTCAAATCCCTCATTAATGA..................................................................................................................AACCATTTATCTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573552" ref_strand="+" ref_description="SGN-U573552 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147804705|emb|CAN64869.1| (e_value=1e-30) hypothetical; (*ATH) AT4G18210.1 (e_value=3e-27) | Symbol: None | purine permease family protein, similar to purine permease (Arabidopsis thaliana) GI:7620007, contains Pfam profile PF03151: Domain of unknown function, DUF250 | chr4:10076107-10077759 FORWARD | Aliases: T9A21.60, T9A21_60; (*SWP) sp|O49725|PUP10_ARATH (e_value=3e-26) Probable purine permease 10 OS=Arabidopsis thaliana GN=PUP10; ">
      <seq>gctcaaagtactcttaaaagcctttctcactcattcttctcactctacatatcaacatatattgtatgtttctttcccaattttggggaaaacaaaaaaagataactctatggaagaagttcaacaaaagctcttggatatcccaaatgaagaaatatgtgaggatgaaaattccaacattgaatcaagtggatcaactaattgttgttcctactttgccaagcataaatggtggtaccaagttgccatttttaccctttttactataattggagaagtagtaacatcactattggttaaaacatattttaccaaaggtggtaaaagtatatggttagtctccttagtgcaaaatgcagggttcccaattcttctccctttcctatacactgtgtcactcaaaaatcatagccaaattgaggtgatcaaaggaaatcaagaaccccatatttgcataatctttttagtttatgctgttctaggtgtgttacttggtggggttagtgttttcaactcgatcggtctaaagtaccttcaagtatcaacacattctctcactagtaccactcgactagggtttagtattatcttctctttattccacaatgcacataagttcaccccagttatagtaaactctctagttcttgtaacagctgcttcagtcattcttgtggttcataataacgagtctggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="26204" stop="30688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26503" g_stop="26648" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26649" i_stop="29834" i_length="3186">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29835" g_stop="30388" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="700" r_length="554" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U573552" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26503" e_stop="26648"/>
          <exon e_start="29835" e_stop="30388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAAAGTACTCTTAAAAGCCTTTCTCACTCATTCTTCTCACTCTACATATCAACATATATTGTATGTTTCTTTCCCAATTTTGGGGAAAACAAAAAAAGATAACTCTATGGAAGAAGTTCAACAAAAGCTCTTGGATATCCCAAGTTAGTATCTATCTATTCTCTCCTCTTTTTTAAAAAAAAAAAAATTAGAGATATCAAATTCGAGTATGTTACGATTTCTTTTGTCAAGAATTGCTTGAGTTTTTTAGATTTAATTAGATGTATTTGATTCGAGTCTGATTATGTAAGAAAAAATTGTTAGTGTGTGATTGCTTGAGATTCCTTCACCTTTAATTAGATGCTTCCGATTTATGTTTTGATTATGTAAAAACATTTAACAAAAGAACAATTTTAAGTTCTTTCACTTTCAGTTAGATGTCTCATGTTCTAGCCCTCGTTATGAAATAATAGTTTGTTAGGGAGTAACCTGAGGTTCATTTATTTTTAATAAAGTTCTCAAATTAAATTGTTAGTTATGAAAAAAAATCATGTTAGTGAGTGTTTTTCTCCGTAAAAATACTTTAAATGATTTAAAATTAATTTAGTTAAATTTCAATACAAGTATCGAGAACCGCAGAAGGAAAAGGAAAAAAAAACACAAGATGGGTTTGTTTGTTGGAGATGGAATTTTCTTTTTGATTCAACTGCAGATATCATAGAGTTTTTGCCATTAAGTTAAGGGTCTGTTTGGGATGACTGGAAATATTCGAGGAGAATGTTTTTTCTTAAAAAAGAGATTTTTTTCAAAAAAAATTAATTTTTATATGTTTGGTAAGTAAATATGAATAGAAAATATTATTTTAAAAATATTTATATATAATATAGATAGACGAAATAAGAAGGAAGAGGGTAGCTGGGTAGGGTAGGGGTATGGGTTAGGGTAGGAGTATAGGCGGGTAGGGTATGGGATGGGATGGGAGCAAGATTTGTAGTGTAAAAGTTATTTTATTTTTAAAAGGAGAAAATCTCGAATATGTCATCAAATTTTCACAAACGAAGTTAACAATGATTTGGTCGTGTTATTAATTAAATCATTCTTTAAAAGGAAAAAGTTTCAAATACATCATTAAATTTTAAAAAAAAAGTCATCTATGTCATACGTTAAAAGTTTAAGCCATCTATACTATTTCAGTTAACAAATTGTGACATAAATGAGCGAGCTAAACTTTTCAAACAAATTACGTAGATGAATTTTTTTAAAACAAATGGATAATATATTTGAATCTTTTTTTCTGTTTTAGGATTGCATCTGCTCGTGATTGGGACAGGTTCAAATGTCATTTATAAAACTTCGGTTTATTAATTTTTTTTCTTCGTAATTATATATTTTTTCTTTTATGAAAATGATTTGACAAGTAATCCTCTTTGGCTGGTCGTTTTCCAAAATAATAATAAAAAAAAATTGCTTAATTATAGACTTGATTGCTCCATCAGAAAGTTGTTCAAATTTTTAATTCTCAAACATGTGTTGATATTTGTACGGTTAGAAGAATATATCATTAATGATAAAATTAAAAAAAATAATAAAGTAGAAAAATATTTAAACTATTAAAATAAAATCTTAAAACACTTAAATTAGAAATCTTAAATTTAAGTCACGAAAATAAATAAAAGAAATTGTAATAAGGAAAATTGATTTATGCAAATATTCATTTTTATGTTATAGAGCATTCATTTTATTGAATATTATATGTTGTAATCTCAATTGATCATGTAAGTATTTATTAAACACATAAATAAATTCAGAATTTTAAGGTTTATAAATTCAATTTGTTAAGGTTCATTAAATATGTTATATTTTTAAAGTTATTAGGTCACATCCCCTATTTATTATAGTTTAATCATTCTTACACATACATCTCAAAAATTTAGATTTAATTGAACTCATAATGGTATACAGTTATTGAAAAAAATAATATCTATTATTTGTAGATGTGATAATTGTTGTGCTTTTAAATATCTTTTCTTCTTTTGTCATATTATATATATTTATATTATAAGCTTTTTCCTAAAATGACATCTTTAGGTGGCAATGAAAATTGTGACCTTTACTATATGGTAGAGCCACATTTTGAGAAAGTAGCCAAAAAAAGAGACAATAATTGTAGGGTAATAAAAAAAGAGGCAATGATAATTCATTATGAGAAAATAACGAGTTATGATTTTTCGGAAATACTTTCTCCGTTCATTATTATTTATTATAGTTTTTATTTTTTAAGAACTTTGACTAACATTTAAGATGTACTTTTTCATTATATTGATCTGTAAAAAAAAATGCAATTTATAATGTATAATTTATGAATATTTAATTTTTTTATTTAAAATATTAAATTAATATAATTTAATTTAACTTTTAAAATTAGTCAAACTGTCTTTTTGAAAAACGCAATATGACAAATAAAAGTGGACGGATAAAATAGTTATTAGTTTTGTTTCTCAATGTAGTAGTAAAATATGCGTTAACTTTACTTTTTTCGGACTATACTTGTGAAATTTCTATGCATCAATTAATTTTATATATAAAAATCTCAAAAAAAAATATAATATACGTAGAAATTATCCTTATCTTTATCAGGCACAATAACTATTTTCTATTGATCCTCGATTTTCTTTATATATAAAGTAAAGGACAAGAATTAAAAGCAAATTATAGTGGGGTAGGTGTGTGTTGATTTGTTTATTAATCCAAACAATAAAATAAAGAAAACTCCAAAAGCTTATCACAAACCAATTCTTAAATTATATATTCCGTTGTAGCTTCTAATGTAATTTTTTTTAATTTGGGAATAAATGCCATTTTGTTAAAAATTAAGCTTGTTTTAGAAAAAAAAATAAAGCATGTTTAAGTTGGGACTTGGGAGTTCTTTTAGTTACATATAATATTGCTTATAATTAAACATGATCTAATTCGTGAAATATGATAAATAATTTATTATGGTATATGAATCGGTATATATGAGCTAAATCCTTAAGTGATCACTTCTGTCCCGTTACGTTTTGCTCTATTACTTGTATAGTAAGTTTTCAAAAGCTTACTTTATTACACTTGGCGCTATTATAAGTTTTTCTAGTCCATAAAGTAAGATTCAATTTTAATTTCCAACCATCATCTCATTGGCTTAGTTAGAATTATTCTCATCGTATGAGTTATGTACATGTCATTGTGAAGAATTTTTACAGTATCAGGTGACCTCATCGTTTATAGTTTTGTTAAACTGATGGAATATATAACTTAAACTCGTCTTCTTAGTGCCTTATTTATTAATTTAACTTTTATCTTTTTGACAGATGAAGAAATATGTGAGGATGAAAATTCCAACATTGAATCAAGTGGATCAACTAATTGTTGTTCCTACTTTGCCAAGCATAAATGGTGGTACCAAGTTGCCATTTTTACCGTTTTTACTATAATTGGAGAAGTAGTAACATCACTATTGGTTAAAACATATTTTACCAAAGGTGGTAAAAGTATATGGTTAGTCTCCTTAGTGCAAAATGCAGGGTTCCCAATTCTTCTTCCTTTCCTATACACTGTGTCACTCAAAAATCATAGCCAAATTGAGGTGATCAAAGGAAATCAAGAACCCCATATTTGCATAATCTTTTTAGTTTATGCTGTTCTAGGTGTGTTACTTGGTGGGGTTAGTGTTTTCAACTCGATCGGTCTAAAGTACCTTCAAGTATCAACACATTCTCTCACTAGTACCACTCGACTAGGGTTTAGTATTATCTTCTCTTTATTCCACAATGCACATAAGTTCACCCCAGTTATAGTAAACTCTCTAGTTCTTGTAACAGCTGCTTCAGTCATTCTTGTGGTTCATAATAACGAGTCTGGGGAA</genome_strand>
        <mrna_strand>GCTCAAAGTACTCTTAAAAGCCTTTCTCACTCATTCTTCTCACTCTACATATCAACATATATTGTATGTTTCTTTCCCAATTTTGGGGAAAACAAAAAAAGATAACTCTATGGAAGAAGTTCAACAAAAGCTCTTGGATATCCCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGAAATATGTGAGGATGAAAATTCCAACATTGAATCAAGTGGATCAACTAATTGTTGTTCCTACTTTGCCAAGCATAAATGGTGGTACCAAGTTGCCATTTTTACCCTTTTTACTATAATTGGAGAAGTAGTAACATCACTATTGGTTAAAACATATTTTACCAAAGGTGGTAAAAGTATATGGTTAGTCTCCTTAGTGCAAAATGCAGGGTTCCCAATTCTTCTCCCTTTCCTATACACTGTGTCACTCAAAAATCATAGCCAAATTGAGGTGATCAAAGGAAATCAAGAACCCCATATTTGCATAATCTTTTTAGTTTATGCTGTTCTAGGTGTGTTACTTGGTGGGGTTAGTGTTTTCAACTCGATCGGTCTAAAGTACCTTCAAGTATCAACACATTCTCTCACTAGTACCACTCGACTAGGGTTTAGTATTATCTTCTCTTTATTCCACAATGCACATAAGTTCACCCCAGTTATAGTAAACTCTCTAGTTCTTGTAACAGCTGCTTCAGTCATTCTTGTGGTTCATAATAACGAGTCTGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604205" ref_strand="+" ref_description="SGN-U604205 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aagcaatatatatatatatatatatatagtgtgatcacatttatatgtacactctctttaaaagttgacaaaaataaaacataaaatttacaatcagaataagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="31392" stop="30688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31092" g_stop="30988" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U604205" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>105</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31092" e_stop="30988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAATATATATATATATATATATATATAGTTGATCACATTTATATGTACACT-TCTTTAAAAGTTGACAAAAATAAAACATAAAATTTACAAT-AGAATAAGAGT</genome_strand>
        <mrna_strand>AAGCAATATATATATATATATATATATAGTG-TGATCACATTTATATGTACACTCTCTTTAAAAGTTGACAAAAATAAAACATAAAATTTACAATCAGAATAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573413" ref_strand="+" ref_description="SGN-U573413 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|77999301|gb|ABB16997.1| (e_value=1e-51) unknown; (*ATH) AT4G18230.1 (e_value=3e-59) | Symbol: None | expressed protein, predicted gene M02B7.4, Caenorhabditis elegans, PID:G1572781 | chr4:10080368-10081950 REVERSE | Aliases: T9A21.80, T9A21_80; (*SWP) sp|Q5A5N6|ALG14_CANAL (e_value=2e-20) UDP-N-acetylglucosamine transferase subunit ALG14 OS=Candida albicans GN=ALG14; ">
      <seq>acttcatttaacctgaatttttcactacagatttcgcagatgcaaatttgaaattccgatggattttgcgctgaattccgattgattttttcgtcggccgatttcaatagacagcagctgaggtgcagagcttcttgtaatggagaagggggatttttgcatctccactatggcatcatcaaatatcgcagttctattagctattggtgtcatcactttacttgtgatacgaattatttatgttattaataggagaagaaagccgcttcactccaaatcaccacgatccctcagtacacttattgttctgggttcaggtggtcacacagcagaaatgttaaacttattatatgtcctccaaacagagaggtttaagccgaggtattatattgctgctgctactgataatatgagtctccaaaaagcacacgtgtttgaggattccttgctcggactacctcttattctaggaagcgcctgaggaagtagggggagctgaattcatgcagatatatcgaagtcgagaggttggtcaatcgtatataacctcagttggaaccacattggttgcaattgcacatgcgttatggttaatgatcaagaccagaccccaagtgattctgtgcaatggccctggaacgtgtattccactatgtgtaattgctttccttttcaaggttttgggaattangtggtcatcaattttctatgtcgagagcattgcaagantcnnnaagctgtctttaagcggtttacttctttacaagctacacntggnnnatcagttattcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="37919" stop="33620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37619" g_stop="37503" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37502" i_stop="36364" i_length="1139">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36363" g_stop="36164" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="317" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36163" i_stop="36077" i_length="87">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36076" g_stop="35942" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="452" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35941" i_stop="34951" i_length="991">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34950" g_stop="34786" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="617" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34785" i_stop="34660" i_length="126">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34659" g_stop="34600" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="677" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34599" i_stop="34020" i_length="580">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34019" g_stop="33903" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="794" r_length="117" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U573413" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37619" e_stop="37503"/>
          <exon e_start="36363" e_stop="36164"/>
          <exon e_start="36076" e_stop="35942"/>
          <exon e_start="34950" e_stop="34786"/>
          <exon e_start="34659" e_stop="34600"/>
          <exon e_start="34019" e_stop="33903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCATTTAACCTGAATTTTTCACTACAGATTTCGCAGATGCAAATTTGAAATTCCGATGGATTTTGCGCTGAATTCCGATTGATTTTTTCGTCGGCCGATTTCAATAGACAGCAGGTTAGTGACAGATTTAGCTCTTTGTCTCGTCGAAGTAAATTTTTCTGTTTCATTGTTTGCAATTTTTTTTTGTGATTTTGTTTCTACTGTATGAAGATAAGTTTCAAATTTCATTTATATGAATTGGGTTTAGCAAAATTTTGATTTTCTTCCCACTGTATGAAGAAAAGTTTCCATTTTTCTGAATTGGGTTTGTAAAATTTTGGTTTTGTTCGTTTGAAATTTCATTTTTTTCTGAATTGGGTTTGCAAATATTTTCATTTAGTTGCGATGTGTTAAGTTGATAATGGCTTCAAACTATGAAGGTTGTGCTGATCTGCCTTTTTAGTGTTACTAAATACTGATTAGATTACTGAATATTTTTCTCGAAAAGAAATGACAAGTTGTGGTAGGAAATTGTAAGTGAAGTTATTAAGCTTCCCAAAAATACGAGCACAGGAATAGTTGTGATGGATTTAACAATTGGTATAAGCTAAAATAAAATGAAAAAAGAGTTGTAGACAGTGTTACTAATAGGAGATGTTGAAGAAGCCTTATAAGAGTATAGCAAAGGCAAATTATTGAAAAATATGTGAACTAAATTAATCTAGTATAGCATAATGGATAACGAGGATTCATATTGCCGATTCCTAGTGTCTTTTTTTAATTTTTATTTGAAGGAATAGCTTATTGATTGATGTGAAATGTTCACGACAAGTGTTCTAGATTTGGGATGAAAAGTTTGAAGTCATATACCAAATCCTTCTATCGATACGGTGGATTTTAATATTAAACCTTTCAAATAAATTGATCAGTAATAACCATAAAATCCTAATCTCTACTCCAACAGACATTTGAGTTAATGTTTATTATGTAATGTGACTTCGACAGTTATTATATCCTGTGACTAATAGTTGTGTAGTCTATCAAGGCAGTTAACCATAGAGACTGTTCTGCATTATGCATAGCCATTCAAGCTTCTCATTTAGTTTTTGTAAGCAAAACATATCTAATCAATGCGCATCTTATATAATCGGTATTTGAATTTCCATTTGAAGCATCCCTCTGGTTAATTAAATTAATACCATTTACCTTTATAAGCTTGTGCTTTGGAATTTATGCTGATTGATTGAAATGTAATCCTGGATCTCTGTCTTCAGCTGAGGTGCAGAGCTTCTTGTAATGGAGAAGGGGGATTTTTGCATCTCCACTATGGCATCATCAAATATCGCAGTTCTATTAGCTATTGGTGTCATCACTTTACTTGTGATACGAATTATTTATGTTATTAATAGGAGAAGAAAGCCGCTTCACTCCAAATCACCACGATCCCTCAGTACACTTATTGTTCTGGGTTCAGGTCTAGTTTTATGTCTGATAGTATTTCTTCTGTTTTACTGCCTTTTCCTTATACTTGTTCTAAATCTTAAGTTCAACTATGATGTAGGTGGTCACACAGCAGAAATGTTAAACTTATTATATGTCCTCCAAACAGAGAGGTTTAAGCCGAGGTATTATATTGCTGCTGCTACTGATAATATGAGTCTCCAAAAAGCACACGTGTTTGAGGATTCCTTGCTCGGTAAGGTATAGTACATCAGTTTAATTTATTTGTCGGTTTTTCGTTCCCCCTTTTTATCAGACAACGATATGTCAAAAAAATGACGAGTGGAATGGTGTGTGGTTTCTTGTGACTATGAACCAAGAGAGGATAACATTTTTGTATTAGGCTGTTAACACATTATTCTTGTGACTTTTCTCAATTCCTTTATCAGTTTTGAATTAGGCTTCTAAGTTTTCTTTTGGATTTTAACACCTCGTTCACTGTGTCCAAATATTTAATTGCCTTAGTTGTTAAGTGACTAGTATAGCCATCAGTCACCCAGCTCCATCATTGTTCCCAGTTGCTTGCTCATGCAGTTCAATGTGAAAAGTTAGACTTCACTTTTTGTACCGGCAGAGGTGTTAAAGTGCCAAACCATGTATGTTCAACATCAGGCGGCAATTCTTAGGAAGTTTGGCTTGCATATCATCGTAGCCTAATGATCTCTCCAAATCAAAATGTGTTGCTTCTTGTAGAGCCTAATCTTAGAACTCATAGACTGGCAGTCCTTATCGTTTACAAATATATCAAAAATAAAGATTCATAGAATGCTCAAACACCGATTTGTGCATCTAGTATGGTAAATCACATGATTTCTCATATGATCAAAAGAATTTTAGAAAATCAAATTATGTATCTCAATGCATCAAACAATTGGTATACCAAGTCCTTTTACTTATTATTTGCAGTAAGAGATGAAAAATGTTTCTGCAAATGTGTTCCATGTATATATGTAACATTTAGCTATAATTGTCTGCATACAAGTATGTGTACCTTGCTTTTCGTCTCTGAGATAAAACCATAGTCTGTATGTTCTTTCAGATTGTCTAACTTAGGTTTGGAGGGGTCTTCATTCTCTTCTAGTTGTTTAGACTTCAGAGTATTTGAAATACATATCCTACACCACAGAAGCCTCCTCTTCTCCCGGAACTGATCATGATATTCTATTCTTAATTGGCTATATTAATAGGACTACCTCTTATTCTAGGAAGCGCCTGAGGAAGTAGGGGGAGCTGAATTCATGCAGATATATCGAAGTCGAGAGGTTGGTCAATCGTATATAACCTCAGTTGGAACCACATTGGTTGCAATTGCACATGCGTTATGGTTAATGATCAAGACCAGACCCCAAGTGGTATCAGACAAACCTTCTCATATTACCATTTACTCCCCTTTGAAATTGAAATTACCAATCTGCAGATACTTTCTCCTTTATATATCCTGGTCTTCTGATTTATCTTTATTTGGTACTTTGTCTCAGATTCTGTGCAATGGCCCTGGAACGTGTATTCCACTATGTGTAATTGCTTTCCTTTTCAAGGTTTGTTTATTAGATAGTAATCTTTTGTTCTTTTAACTTATTTGTTTTGTCAAATTGGATGCTAGAATACTGATTACATGCAGAATATCTCTGTTAACGTCCCGATTTAGAAAAAAAATGGATCATACTACCTTGATCTCAAAGTCAAGTCCATTCCTGTATTTTCAACTATCTTGCTTGGACTCTTAAAAATGCCGACAGCTGCATGTCGGATCCTCCAAAAGTACAGTGTATTTCGGAGTATTCGAGAGGTGATGCCACATTTTTGGTGTCCTAGCAACATAGATTTCCAAGTGTGTAGGATGACAACAACTTGGACCATTTTGTCTTTTCCTTGTCGGTTCATAAATATTTGCCTCGACTTATTTGGTTTCACGGCCTCTCCAAGCTTATTTGGCACCATCCCTTTAAAAAGTGTGAACAAACCTAACAAAAGGAGGAAGAGAACAGTCAATGAATCAAAAGAGAGCACTTGACTACTCACAGAGTCACATTGATATCGAACTTGCAAACGCTTTTAGTTTCTTATGATCCTTCAAGGTGACATTTGAGGTGCTAATTGAAAGTTCAACTTCTTCAGGTTTTGGGAATTAGGTGGTCATCAATTTTCTATGTCGAGAGCATTGCAAGAGTCAGGAAGCTGTCTTTAAGCGGTTTACTTCTTTACAAGCTACACATGGCAGATCAGTTATTCGTG</genome_strand>
        <mrna_strand>ACTTCATTTAACCTGAATTTTTCACTACAGATTTCGCAGATGCAAATTTGAAATTCCGATGGATTTTGCGCTGAATTCCGATTGATTTTTTCGTCGGCCGATTTCAATAGACAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGCAGAGCTTCTTGTAATGGAGAAGGGGGATTTTTGCATCTCCACTATGGCATCATCAAATATCGCAGTTCTATTAGCTATTGGTGTCATCACTTTACTTGTGATACGAATTATTTATGTTATTAATAGGAGAAGAAAGCCGCTTCACTCCAAATCACCACGATCCCTCAGTACACTTATTGTTCTGGGTTCAG.......................................................................................GTGGTCACACAGCAGAAATGTTAAACTTATTATATGTCCTCCAAACAGAGAGGTTTAAGCCGAGGTATTATATTGCTGCTGCTACTGATAATATGAGTCTCCAAAAAGCACACGTGTTTGAGGATTCCTTGCTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTACCTCTTATTCTAGGAAGCGCCTGAGGAAGTAGGGGGAGCTGAATTCATGCAGATATATCGAAGTCGAGAGGTTGGTCAATCGTATATAACCTCAGTTGGAACCACATTGGTTGCAATTGCACATGCGTTATGGTTAATGATCAAGACCAGACCCCAAGTG..............................................................................................................................ATTCTGTGCAATGGCCCTGGAACGTGTATTCCACTATGTGTAATTGCTTTCCTTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGGAATTANGTGGTCATCAATTTTCTATGTCGAGAGCATTGCAAGANTCNNNAAGCTGTCTTTAAGCGGTTTACTTCTTTACAAGCTACACNTGGNNNATCAGTTATTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598248" ref_strand="+" ref_description="SGN-U598248 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tctagacacctcaatcatcctcactatatcgtagagatccaaagtcgtgacacctaaatattcaataccaatagatctgttcttataacctatctaatcaatgtttccccacagatgttcagtgtgtgtcgaatcctctttttgaagagtccgagcacatagtacaccctaaggtaagaacaacagagcaggaccacaaccactgatttgtgggatcattcactaaaatttgggtaaggacgaaaagtaaaagttgtatcttgcaatggagcagcttactcctgacatggatcatggaattgaatttatacaaaaaaatgatttttcaagtttcttaatcgaaataaactatcactaactatttatcgaaacacaactcatctattaattgttcagaaactctttttagattttgccctaatgtttgattaatttttacgaattagggcgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="39984" stop="38931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39684" g_stop="39231" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U598248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39684" e_stop="39231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGACACCTCAATCATCCTCACTATATCGTAGAGATCCAAAGTCGTGACACCTAAATATTCAATACCAATAGATCTGTTCTTATAACCTATCTAATCAATGTTTCCCCACAGATGTTCAGTGTGTGTCGAATCCTCTTTTTGAAGAGTCCGAGCACATAGTACACCCTAAGGTAAGAACAACAGAGCAGGACCACAACCACTGATTTGTGGGATCATTCACTAAAATTTGGGTAAGGACGAAAAGTAAAAGTTGTATCTTGCAATGGAGCAGCTTACTCCTGACATGGATCATGGAATTGAATTTATACAAAAAAATGATTTTTCAAGTTTCTTAATCGAAATAAACTATCACTAACTATTTATCGAAACACAACTCATCTATTAATTGTTCAGAAACTCTTTTTAGATTTTGCCCTAATGTTTGATTAATTTTTACGAATTAGGGCGATAT</genome_strand>
        <mrna_strand>TCTAGACACCTCAATCATCCTCACTATATCGTAGAGATCCAAAGTCGTGACACCTAAATATTCAATACCAATAGATCTGTTCTTATAACCTATCTAATCAATGTTTCCCCACAGATGTTCAGTGTGTGTCGAATCCTCTTTTTGAAGAGTCCGAGCACATAGTACACCCTAAGGTAAGAACAACAGAGCAGGACCACAACCACTGATTTGTGGGATCATTCACTAAAATTTGGGTAAGGACGAAAAGTAAAAGTTGTATCTTGCAATGGAGCAGCTTACTCCTGACATGGATCATGGAATTGAATTTATACAAAAAAATGATTTTTCAAGTTTCTTAATCGAAATAAACTATCACTAACTATTTATCGAAACACAACTCATCTATTAATTGTTCAGAAACTCTTTTTAGATTTTGCCCTAATGTTTGATTAATTTTTACGAATTAGGGCGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591584" ref_strand="+" ref_description="SGN-U591584 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115825|sp|P07369|CB2G_SOLLC (e_value=3e-141) RecName:; (*ATH) AT1G29930.1 (e_value=1e-127)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=2e-142) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; ">
      <seq>gaacaacttttctttttgtacattcaagagtttctcattctacttctataatggctacttctaccatggctctttcttcctctacatttgccggaaaggcggttaaactctccccatcttcttctgaaatcaccggaaatgggagagtcaccatgaggaagactgctaccaaggccaagccaacctcctctggtagcccatggtatggtcctgaccgtgttaagtacttgggaccattctctggggaatccccaagctacttgaccggtgagtttcctggagattacggatgggacactgctggactttcagctgaccctgaaacattcactaagaaccgagagttggaggttattcattgtaaatgggccatgcttggtgctcttggatgtgtattccccgagcttttggcccgtaatggtgttaagttcggtgaagctgtatggttcaaggctggatcacaaattttcagcgagggtggacttgactacttgggaaacccaagcttggtccatgcacaaagcattttggctatctgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctggtgggcctcttggtgaggttgttgacccactctaccctggtggtagctttgacccactgggccttgctgatgacccagaggcttttgctgagctcaaggtaaaagagatcaagaatggtagacttgctatgttctccatgttcggattctttgttcaagctatcgtcaccggaaagggtccatttggagaaccttgctgaccatctcgctgatccagtcaataacaatgcttgggccttccccacaaactttgtccccggaaaataaaaatcttaaaacattctcaaatttctgatcatttgttgaacatggaaaattgtaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="41747" stop="40280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41448" g_stop="40599" g_length="850"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="851" r_length="851" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U591584" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41448" e_stop="40599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACTTTTCTTTTTGTACATTCAAGAGTTTCTCATTCTACTTCTATAATGGCTACTTCTACCATGGCTCTTTCTTCCTCTACATTTGCCGGAAAGGCGGTTAAACTCTCCCCATCTTCTTCTGAAATCACCGGAAATGGGAGAGTCACCATGAGGAAAACTGCTACCAAGGCCAAGCCAGCCTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGGGAATCCCCAAGCTACTTGACCGGTGAGTTTCCTGGTGATTACGGATGGGACACTGCTGGACTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGTAGATGGGCCATGCTTGGTGCTCTTGGATGTGTATTCCCCGAGCTTTTGGCCCGTAATGGTGTTAAGTTCGGTGAAGCTGTATGGTTCAAGGCTGGATCACAAATTTTCAGCGAGGGTGGACTTGACTACTTGGGAAACCCAAGCTTGGTCCATGCACAAAGCATTTTGGCTATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGACCCACTCTACCCTGGTGGTAGCTTTGACCCACTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGCTCAAGGTAAAAGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTCGGATTCTTTGTTCAAGCTATCGTCACCGGAAAGGGTCCA-TTGGAGAACCTTGCTGACCATCTCGCTGATCCAGTCAATAACAATGCTTGGGCCTTCGCCACAAACTTTGTCCCCGGAAA</genome_strand>
        <mrna_strand>GAACAACTTTTCTTTTTGTACATTCAAGAGTTTCTCATTCTACTTCTATAATGGCTACTTCTACCATGGCTCTTTCTTCCTCTACATTTGCCGGAAAGGCGGTTAAACTCTCCCCATCTTCTTCTGAAATCACCGGAAATGGGAGAGTCACCATGAGGAAGACTGCTACCAAGGCCAAGCCAACCTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGGGAATCCCCAAGCTACTTGACCGGTGAGTTTCCTGGAGATTACGGATGGGACACTGCTGGACTTTCAGCTGACCCTGAAACATTCACTAAGAACCGAGAGTTGGAGGTTATTCATTGTAAATGGGCCATGCTTGGTGCTCTTGGATGTGTATTCCCCGAGCTTTTGGCCCGTAATGGTGTTAAGTTCGGTGAAGCTGTATGGTTCAAGGCTGGATCACAAATTTTCAGCGAGGGTGGACTTGACTACTTGGGAAACCCAAGCTTGGTCCATGCACAAAGCATTTTGGCTATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGACCCACTCTACCCTGGTGGTAGCTTTGACCCACTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGCTCAAGGTAAAAGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTCGGATTCTTTGTTCAAGCTATCGTCACCGGAAAGGGTCCATTTGGAGAACCTTGCTGACCATCTCGCTGATCCAGTCAATAACAATGCTTGGGCCTTCCCCACAAACTTTGTCCCCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591974" ref_strand="+" ref_description="SGN-U591974 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115825|sp|P07369|CB2G_SOLLC (e_value=9e-45) RecName:; (*ATH) AT1G29930.1 (e_value=8e-39)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=7e-46) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; ">
      <seq>ctttttgtacattcaagagtttctcattctacttctataatggctacttctaccatggctctttcttcctctacatttgccggaaaggcggttaaactctccccatcttcttctgaaatcaccggaaatgggagagtcaccatgaggaaaactgctaccaaggccaagccagcctcctctggtagcccatggtatggtcctgaccgtgttaagtacttgggaccattctctggggaatccccaagctacttgaccggtgagtttcctggtgattacggatgggacactgctggactttcagctgaccctgaaacattcgcttaaaacccgggagtggaaggtttttcatggaaaatggcccagcctggggcctctgggatgtgatttccccaaccttttggcccgtattggggttaagtccggggaacctgtttggttaagggttggatcacaaattttcagcgagggtggacttgactacttgggaaacccaagcttggtccatgcacaaagcattttggctatctgggcttgccaagttgtgttgatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="41737" stop="40586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41437" g_stop="40886" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U591974" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41437" e_stop="40886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGTACATTCAAGAGTTTCTCATTCTACTTCTATAATGGCTACTTCTACCATGGCTCTTTCTTCCTCTACATTTGCCGGAAAGGCGGTTAAACTCTCCCCATCTTCTTCTGAAATCACCGGAAATGGGAGAGTCACCATGAGGAAAACTGCTACCAAGGCCAAGCCAGCCTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGGGAATCCCCAAGCTACTTGACCGGTGAGTTTCCTGGTGATTACGGATGGGACACTGCTGGACTTTCAGCTGACCCTGAAACATTCGC-TAAGAACCGTGAGTTGGAGGTTATTCATTGTAGATGGGCCATGCTTGGTGCTCTTGGATGTGTATTCCCCGAGCTTTTGGCCCGTAATGGTGTTAAGTTCGGTGAAGCTGTATGGTTCAAGGCTGGATCACAAATTTTCAGCGAGGGTGGACTTGACTACTTGGGAAACCCAAGCTTGGTCCATGCACAAAGCATTTTGGCTATCTGGGCTTGCCAAGTTGTGTTGATGGGA</genome_strand>
        <mrna_strand>CTTTTTGTACATTCAAGAGTTTCTCATTCTACTTCTATAATGGCTACTTCTACCATGGCTCTTTCTTCCTCTACATTTGCCGGAAAGGCGGTTAAACTCTCCCCATCTTCTTCTGAAATCACCGGAAATGGGAGAGTCACCATGAGGAAAACTGCTACCAAGGCCAAGCCAGCCTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGGGAATCCCCAAGCTACTTGACCGGTGAGTTTCCTGGTGATTACGGATGGGACACTGCTGGACTTTCAGCTGACCCTGAAACATTCGCTTAAAACCCGGGAGTGGAAGGTTTTTCATGGAAAATGGCCCAGCCTGGGGCCTCTGGGATGTGATTTCCCCAACCTTTTGGCCCGTATTGGGGTTAAGTCCGGGGAACCTGTTTGGTTAAGGGTTGGATCACAAATTTTCAGCGAGGGTGGACTTGACTACTTGGGAAACCCAAGCTTGGTCCATGCACAAAGCATTTTGGCTATCTGGGCTTGCCAAGTTGTGTTGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579213" ref_strand="+" ref_description="SGN-U579213 Tomato 200607#2 [181 ESTs aligned] (*GB) gi|115825|sp|P07369|CB2G_SOLLC (e_value=7e-144) RecName:; (*ATH) AT1G29930.1 (e_value=3e-133)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=4e-145) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; ">
      <seq>ggggatctcttctttttttgtacattctaagagttcataatggctgcttctactatggctctttcctcctctactttcgccggtaaggcggtgaaactcgcaccatcttcttctgaaatcagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagcctgcctcctctggtagcccatggtacggtcctgaccgtgttaagtacttgggcccattctctggtgaatcaccaagctatttgactggtgagttccctggtgattacggatgggacacggctgggctttcagctgaccctgaaacattcgctaagaaccgtgagttggaggttattcattgcagatgggccatgcttggtgctcttggatgtgttttccccgagcttttggcacgtaacggtgttaagtttggtgaagctgtatggttcaaagctggatctcaaattttcagcgagggcggacttgactacttgggaaaccctagtttggttcatgcacaaagcattttggctatttgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctggtgggcctcttggtgaggttgttgatccactttaccctggtggtagctttgacccattgggccttgctgaagacccagaggcttttgctgagctcaaggtgaaggagatcaagaacggcagacttgctatgttctccatgtttggattctttgttcaagctattgtcactggaaagggtccattggagaatcttgccgaccacattgctgacccagttaacaacaacgcctgggcctttgccacaaactttgttcccggaaagtgaagtttttgagagaaaaaaatgttacgtctagtatcttattgtttgatgacaaccatgtaaacctagcaattgtagattactagagattgattatatatgaagttttttgctaaaacctagtgtttgttgattaaatctaaatcattaatattaatatatagtaacaagtggaaaaatgggacaagagaaaatgaaagattaatttctttatgtcatttataatgacttaacagttaaataatgtatccgtgataaatttcgcaattatatatggttatagtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="43773" stop="42042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43477" g_stop="42397" g_length="1081"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1085" r_length="1085" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U579213" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>1081</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43477" e_stop="42397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATCTCTTCTTTTTTTGTACATTCTAAGAGTTCATAATGGCTGCTTCTACTATGGCTCTTTCCTCCTCTACTTTCGCCGGTAAGGCGGTGAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCTGCCTCCTCTGGTAGCCCATGGTACGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAAGTGAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACTGGAAAGGGTCCATTGGAGAATCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCCTTTGCCACAAACTTTGTTCCCGGAAAGTGAAGTTTTTGAGAGAAAAAAATGTTACGTCTAGTATCTTATTGTTTGATGACAATCATGTAAACCTAGCAATTGTAAATTACT--AGA--GATTATATATGAAGTTTTTTGCTAAAACCTAGTGTTTGTTGATTAAATCTAAATCATTAATATTAATATATAGTAACAAGTGGAAAAATGGGAAAAGAGAAAATGAAAGATTAATTTCTTTATGTCATTTATAATGACTTAACAGTTAAATAAT</genome_strand>
        <mrna_strand>GGGGATCTCTTCTTTTTTTGTACATTCTAAGAGTTCATAATGGCTGCTTCTACTATGGCTCTTTCCTCCTCTACTTTCGCCGGTAAGGCGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCTGCCTCCTCTGGTAGCCCATGGTACGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACGGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACTGGAAAGGGTCCATTGGAGAATCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCCTTTGCCACAAACTTTGTTCCCGGAAAGTGAAGTTTTTGAGAGAAAAAAATGTTACGTCTAGTATCTTATTGTTTGATGACAACCATGTAAACCTAGCAATTGTAGATTACTAGAGATTGATTATATATGAAGTTTTTTGCTAAAACCTAGTGTTTGTTGATTAAATCTAAATCATTAATATTAATATATAGTAACAAGTGGAAAAATGGGACAAGAGAAAATGAAAGATTAATTTCTTTATGTCATTTATAATGACTTAACAGTTAAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591359" ref_strand="+" ref_description="SGN-U591359 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|914283|gb|AAB34067.1| (e_value=2e-17) light-harvesting complex b type 2, Lhcb2 [Ginkgo biloba, 3-4 week old seedlings, Peptide Partial, 130 aa]; (*ATH) AT3G27690.1 (e_value=2e-17)  Symbol: None | chlorophyll A-B binding protein (LHCB2:4), nearly identical to Lhcb2 protein (Arabidopsis thaliana) GI:4741950; similar to chlorophyll A-B binding protein 151 precursor (LHCP) GB:P27518 from (Gossypium hirsutum); contains Pfam PF00504... ; (*SWP) sp|P07370|CB2B_SOLLC (e_value=1e-17) Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B; ">
      <seq>gttcaaagctggatctcaggttttcagcgagggcggacttgactacttgggaaaccctagtttggtcatgcacaaagcattttggctatttgggcttgccaagttggttgatgggagccgtggggttaccgattgctggtgggcctcttgggaggttgtgatccactttaccctggggagctttgacccattggccttgctgaagacccagaggcttttgctggctaaggtgaaggagatcaagaatggagacttgctatgtctacatggtggattctttgttcaagctattgtaccggaaagggcctgtgagaaccttgctaccacattgctgacccagttaacaacaacgcctgggctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="43343" stop="37987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43043" g_stop="42662" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U591359" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.052" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43043" e_stop="42662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAAGTGAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACTGGAAAGGGTCCATTGGAGAATCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCCTTT</genome_strand>
        <mrna_strand>GTTCAAAGCTGGATCTCAGGTTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGG-TCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTG-GTTGATGGGAGCCG-TG-GGGTTACCG-ATTGCTGGTGGGCCTCTTGG-GAGGTTG-TGATCCACTTTACCCTGG-GG-AGCTTTGACCCATT-GGCCTTGCTGAAGACCCAGAGGCTTTTGCTG-GCT-AAGGTGAAGGAGATCAAGAATGG-AGACTTGCTATG-TCTACATG-GTGGATTCTTTGTTCAAGCTATTGT-ACCGGAAAGGG-CC-TGTGAGAACCTTG-CTACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590177" ref_strand="-" ref_description="SGN-U590177 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115819|sp|P07370|CB2B_SOLLC (e_value=8e-87) RecName:; (*ATH) AT1G29930.1 (e_value=2e-80)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P27492|CB21_TOBAC (e_value=6e-88) Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16; ">
      <seq>acggaccctttccggtgacaatagcttgaacaaagaatccaaacatggagaacatagcaagtctaccattcttgatctccttcaccttgagctcagcaaaagcctctgggtcttcagcaaggcccaatgggtcaaagctaccaccagggtaaagtggatcaacaacctcaccaagaggcccaccagcaatacggtaaccctcaacggctcccatcaacacaacttggcaagcccaaatagccaaaatgctttgtgcatgaaccaaactagggtttcccaagtagtcaagtccgccctcgctgaaaatttgagatccagctttgaaccatacagcttcaccaaacttaacaccgttacgtgccaaaagctcggggaaaacacatccaagagcaccaagcatggcccatctgcaatgaataacctccaactcacgatttcttagcgaatgtttcagggtcagctgaaagcccagcagtgtcccatccgtaatcaccagggaactcaccagtcaaatagcttggggcttggcagcagtcttcctcattgtaattctcccatttccactgatttcagaagaagatggtgcgagtttcaccttctatccggcgaaggtagaggaggaaagagccattgtagaagcagccatggtttaattttaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="42418" stop="43750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42718" g_stop="43236" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43237" i_stop="43312" i_length="76">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43313" g_stop="43454" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="662" r_length="142" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U590177" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590177" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42718" e_stop="43236"/>
          <exon e_start="43313" e_stop="43454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGACCCTTTCCAGTGACAATAGCTTGAACAAAGAATCCAAACATGGAGAACATAGCAAGTCTGCCGTTCTTGATCTCCTTCACTTTGAGCTCAGCAAAAGCCTCTGGGTCTTCAGCAAGGCCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGATCAACAACCTCACCAAGAGGCCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACG-GTTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTGGTGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGACCGTACCATGGGCTACCAGAGGAGGCAGGCTTGGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGAGAGTTTCACCGCCTTACCGGCGAAAGTAGAGGAGGAAAGAGCCATAGTAGAAGCAGCCATTATGAACTCTTAGAAT</genome_strand>
        <mrna_strand>ACGGACCCTTTCCGGTGACAATAGCTTGAACAAAGAATCCAAACATGGAGAACATAGCAAGTCTACCATTCTTGATCTCCTTCACCTTGAGCTCAGCAAAAGCCTCTGGGTCTTCAGCAAGGCCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGATCAACAACCTCACCAAGAGGCCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGATTTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTG............................................................................GGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCTTCTATCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATGGTTTAATTTTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592308" ref_strand="+" ref_description="SGN-U592308 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115825|sp|P07369|CB2G_SOLLC (e_value=8e-106) RecName:; (*ATH) AT1G29930.1 (e_value=6e-99)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=6e-107) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; ">
      <seq>gctaagagtttataatggctgcttctactatggctctttcctcctctactttcgccggtaaggcggtgaaactctcaccatcttcttctgaaatcagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagcctgcctcctctggtagcccatggtacggtcctgaccgtgttaagtacttgggcccattctctggtgaatcaccaagctatttgactggtgagttccctggtgattacggatgggacacggctgggctttcagctgaccctgaaacattcgctaagaatcgtgagttggaggttattcattgcagatgggccatgcttggtgctcttggatgtgttttccccgagcttttggcacgtaacggtgttaagtttggtgaagctgtatggttcaaagctggatctcaaattttcagcgagggcggacttgactacttgggaaaccctagtttggttcatgcacaaagcattttggctatttgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctgaagacccagaggcttttgctgagctcaaggtgaaggagatcaagaacggcagacttgctatgttctccatgtttggattctttgntcaagctattgtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="43751" stop="42431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43452" g_stop="42901" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42900" i_stop="42832" i_length="69">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42831" g_stop="42731" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="653" r_length="101" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U592308" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43452" e_stop="42901"/>
          <exon e_start="42831" e_stop="42731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGAGTTCATAATGGCTGCTTCTACTATGGCTCTTTCCTCCTCTACTTTCGCCGGTAAGGCGGTGAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCTGCCTCCTCTGGTAGCCCATGGTACGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAAGTGAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACT</genome_strand>
        <mrna_strand>GCTAAGAGTTTATAATGGCTGCTTCTACTATGGCTCTTTCCTCCTCTACTTTCGCCGGTAAGGCGGTGAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCTGCCTCCTCTGGTAGCCCATGGTACGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACGGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAATCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTG.....................................................................AAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGNTCAAGCTATTGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591763" ref_strand="+" ref_description="SGN-U591763 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115825|sp|P07369|CB2G_SOLLC (e_value=9e-93) RecName:; (*ATH) AT1G29930.1 (e_value=2e-84)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=7e-94) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; ">
      <seq>cggcacgaggcacaattcatttctttttatttattaaaattaaaccatggctgcttctacaatggctctttcctcctctaccttcgccggaaagacggtgaaactcgcaccatcttcttctgaaatcagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagccagcttcctctggtgattacggatgggacactgctgggctttcagctgaccctgaaacattcgctaagaatcgtgagttggaggttattcattgcagatgggccatgcttggtgctcttggatgtgttttccccgagcttttggcacgtaacggtgttaagtttggtgaagctgtatggttcaaagctggatctcaaattttcagcgagggcggacttgactacttgggaaaccctagtttggttcatgcacaaagcattttggctatttgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctggtgggcctcttggtgaggttgttgatccactttaccctggtggtagctttgacccattgggccttgctgaagacccacaggcttttgctgagctcaaggtgaaggagatcaagaatggtagacttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="43783" stop="42472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43438" g_stop="43297" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="188" r_length="142" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43296" i_stop="43210" i_length="87">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43209" g_stop="42772" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="626" r_length="438" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U591763" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43438" e_stop="43297"/>
          <exon e_start="43209" e_stop="42772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTGCTTCTACTATGGCTCTTTCCTCCTCTACTTTCGCCGGTAAGGCGGTGAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCTGCCTCCTCTGGTAGCCCATGGTACGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAAGTGAAGGAGATCAAGAACGGCAGACTTGCTA</genome_strand>
        <mrna_strand>ATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTG.......................................................................................GTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAATCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCACAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592371" ref_strand="+" ref_description="SGN-U592371 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|81074613|gb|ABB55370.1| (e_value=4e-55) chlorophyll; (*ATH) AT1G29930.1 (e_value=2e-51)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=3e-56) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; ">
      <seq>aaacacaattcatttctttttattaatattaaatcatggctgcttctactatggctctttcttcctctgctttcgccggtaaagcggtaaaactctcaccatcttcttctgaaatcagtggaaatggtagaatcaccatgaggaagaccgttgccaagcctaagcctgcctcctctggtagcccatggtatggtcctgaccgtgttaagtacttgggcccattttctggtgaatcaccaagctatttgactggtgagttcccaggtgactacggatgggacactgctgggctttcagctgaccctgaaacattcgctaagaatcgtgagttggaggttattcattgcagatgggccatgcttggagctcttggttgagttttccctgagcttttggcccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="43778" stop="42773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43444" g_stop="43073" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="401" r_length="372" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U592371" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43444" e_stop="43073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAATGGCTGCTTCTACTATGGCTCTTTCCTCCTCTACTTTCGCCGGTAAGGCGGTGAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCTGCCTCCTCTGGTAGCCCATGGTACGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGT</genome_strand>
        <mrna_strand>TAAATCATGGCTGCTTCTACTATGGCTCTTTCTTCCTCTGCTTTCGCCGGTAAAGCGGTAAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGTAGAATCACCATGAGGAAGACCGTTGCCAAGCCTAAGCCTGCCTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTTTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCAGGTGACTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAATCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGAGCTCTTGGTTGAGTTTTCCCTGAGCTTTTGGCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589991" ref_strand="+" ref_description="SGN-U589991 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115825|sp|P07369|CB2G_SOLLC (e_value=5e-70) RecName:; (*ATH) AT1G29930.1 (e_value=3e-65)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=3e-71) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; ">
      <seq>ggggataacaacaaccatcaaaacacaattcatttctttttatttattaaaattaaaccatggctgcttctacaatggctctttcctcctctaccttcgccggaaagacggtgaaactcgcaccatcttctcctgaaatcagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagccagcttcctctggtagcccatggtatggtcctgaccgtgttaagtacttgggcccattctctggtgaatcaccaagctatttgactggtgagttccctggtgattacggatgggacactgctgggctttcagctgaccctgaaacattcgctaagaaccgtgagttggtggttattcattgcagatgngccatgcttggngctcttggatgtgttttccccgagcttttggcacgtaancggtgttaagtttggtgaagctgtatggnncaaagctggatctcaaattttcagcgagggcggacttgactacttgggnaaannctagtttggntcatgnacaaagcattttgncnatttgggnttgncnagttgtgttaatgggagccgnngagggttaccgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45079" stop="46266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45375" g_stop="45966" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U589991" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45375" e_stop="45966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATAACAACAACCATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAA-CGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGG-AAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTAT</genome_strand>
        <mrna_strand>GGGGATAACAACAACCATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTCCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGTGGTTATTCATTGCAGATGNGCCATGCTTGGNGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAANCGGTGTTAAGTTTGGTGAAGCTGTATGGNNCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGNAAANNCTAGTTTGGNTCATGNACAAAGCATTTTGNCNATTTGGGNTTGNCNAGTTGTGTTAATGGGAGCCGNNGAGGGTTACCGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590397" ref_strand="+" ref_description="SGN-U590397 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115825|sp|P07369|CB2G_SOLLC (e_value=3e-47) RecName:; (*ATH) AT1G29930.1 (e_value=7e-43)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=2e-48) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; ">
      <seq>ggggataacaacaaccatcaaaacacaattcatttctttttatttattaaaattaaaccatggctgcttctacaatggctctttcctcctctaccttcgccggaaagacggtgaaactcgcaccatcttcttctgaaatcagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagccagcttcctctggtagcccatggcatggtcctgaccgtgttaagtacttgggcccattctctggtgaatcaccaagctatttgactggtgagttccctggtgattacggatgggacactgctgggctttcagctgancctgaaacattcgctaagaaccgtgagttggangtnattcattgcanatgggccatgcttngnngctctngnatgtgttttccccgagctttttgnnncgtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45079" stop="46094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45375" g_stop="45793" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U590397" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45375" e_stop="45793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATAACAACAACCATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTT-GGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTG</genome_strand>
        <mrna_strand>GGGGATAACAACAACCATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGCATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGANCCTGAAACATTCGCTAAGAACCGTGAGTTGGANGTNATTCATTGCANATGGGCCATGCTTNGNNGCTCTNGNATGTGTTTTCCCCGAGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581203" ref_strand="+" ref_description="SGN-U581203 Tomato 200607#2 [306 ESTs aligned] (*GB) gi|115825|sp|P07369|CB2G_SOLLC (e_value=3e-144) RecName:; (*ATH) AT1G29930.1 (e_value=1e-133)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=2e-145) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; ">
      <seq>cggccgaggggataacaacaaccatcaaaacacaattcatttctttttatttattaaaattaaaccatggctgcttctacaatggctctttcctcctctaccttcgccggaaagacggtgaaactcgcaccatcttcttctgaaatcagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagccagcttcctctggtagcccatggtatggtcctgaccgtgttaagtacttgggaccattctccggggaagccccaagctatttgactggtgagttccctggtgattacggatgggacactgctgggctttcagctgaccctgaaacattcgctaagaatcgtgagttggaggttattcattgcagatgggccatgcttggtgctcttggatgtgttttccccgagcttttggcacgtaacggtgttaagtttggtgaagctgtatggttcaaagctggatctcaaattttcagcgagggcggacttgactacttgggaaaccctagtttggttcatgcacaaagcattttggctatttgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctggtgggcctcttggtgaggttgttgatccactttaccctggtggtagctttgacccattgggccttgctgaagacccagaggcttttgctgagctcaaggtgaaggagatcaagaatggtagacttgctatgttctccatgtttggattctttgttcaagctattgtcaccggaaagggtccgttggagaaccttgccgaccacattgctgacccagttaacaacaacgcctgggcttttgccacaaactttgttcccggaaagtgagtgcaacaaactgttctccaattagtgtgagattatgagtttttagctttgtgagagatgaatctgtagaaggggtcagttttttaaagcattctgggttatgggttcagtacaagattattgtaaattggtttggattaattaatgaatcttttcatcttgcacaagcaatttttaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45079" stop="46719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45379" g_stop="46419" g_length="1041"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="1052" r_length="1041" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U581203" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1041</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45379" e_stop="46419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACAACAACCATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCGTTGGAGAACCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCTTTTGCCACAAACTTTGTTCCCGGAAAGTGAGTGCAACAAACTCTTCTCCAATTAGTGTGAGATTATGAGTTTTTAGCTTTGTGAGAGATGAATCTGTAGAAGGGGTCAGTTTTTTAAAGCATTCTGGGTTATGGGTTCAGTACAAGATTATTGTAAATTGGTTTGGATTAATTAATGAATCTTTTCATCTTGCACAAGCAATTTTTAATATC</genome_strand>
        <mrna_strand>ATAACAACAACCATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGACCATTCTCCGGGGAAGCCCCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAATCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCGTTGGAGAACCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCTTTTGCCACAAACTTTGTTCCCGGAAAGTGAGTGCAACAAACTGTTCTCCAATTAGTGTGAGATTATGAGTTTTTAGCTTTGTGAGAGATGAATCTGTAGAAGGGGTCAGTTTTTTAAAGCATTCTGGGTTATGGGTTCAGTACAAGATTATTGTAAATTGGTTTGGATTAATTAATGAATCTTTTCATCTTGCACAAGCAATTTTTAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591763" ref_strand="+" ref_description="SGN-U591763 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115825|sp|P07369|CB2G_SOLLC (e_value=9e-93) RecName:; (*ATH) AT1G29930.1 (e_value=2e-84)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=7e-94) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; ">
      <seq>cggcacgaggcacaattcatttctttttatttattaaaattaaaccatggctgcttctacaatggctctttcctcctctaccttcgccggaaagacggtgaaactcgcaccatcttcttctgaaatcagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagccagcttcctctggtgattacggatgggacactgctgggctttcagctgaccctgaaacattcgctaagaatcgtgagttggaggttattcattgcagatgggccatgcttggtgctcttggatgtgttttccccgagcttttggcacgtaacggtgttaagtttggtgaagctgtatggttcaaagctggatctcaaattttcagcgagggcggacttgactacttgggaaaccctagtttggttcatgcacaaagcattttggctatttgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctggtgggcctcttggtgaggttgttgatccactttaccctggtggtagctttgacccattgggccttgctgaagacccacaggcttttgctgagctcaaggtgaaggagatcaagaatggtagacttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45090" stop="46400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45387" g_stop="45575" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45576" i_stop="45662" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45663" g_stop="46100" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="626" r_length="438" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U591763" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45387" e_stop="45575"/>
          <exon e_start="45663" e_stop="46100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTA</genome_strand>
        <mrna_strand>CGGCA-CGAGGCACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTG.......................................................................................GTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAATCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCACAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591182" ref_strand="+" ref_description="SGN-U591182 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|81074613|gb|ABB55370.1| (e_value=2e-136) chlorophyll; (*ATH) AT1G29930.1 (e_value=3e-126)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=2e-137) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; ">
      <seq>gaaaacacaattcatttctttttatttattaaaattaaaccatggctgcttctacaatggctctttcctcctctaccttcgccggaaagacggtgaaactcgcaccatcttcttctgaaatcagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagccagcttcctctggtagcccatggtatggtcctgaccgtgttaagtacttgggaccattctccggggaagccccaagctatttgactggtgagttccctggtgattacggatgggacactgctgggctttcagctgaccctgaaacattcgctaagaatcgtgagttggaggttattcattgcagatgggccatgcttggtgctcttggatgtgttttccccgagcttttggcacgtaacggtgttaagtttggtgaagctgtatggttcaaagctggatctcaaattttcagcgagggcggacttgactacttgggaaaccctagtttggttcatgcacaaagcattttggctatttgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctggtgggcctcttggtgaggttgttgatccactttaccctggtggtagctttgacccattgggccttgctgaagacccagaggcttttgctgaattgaaggtgaaggaaattaagaatggacgtttagctatgttttctatgtttggattctttgttcaagctattgttactggaaagggtccaattgagaacctctctgaccacattaacgaccctgtggctaacaacgctttgggcttacgccacaaactttgtacccggaaaagtgaaagtaatttgggctaattaatgaaagttttatgcttgtgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45094" stop="46477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45393" g_stop="46233" g_length="841"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="842" r_length="842" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U591182" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45393" e_stop="46233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCGTTGGAGAACCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCT-GGGCTTTTGCCACAAACTTTGTTCCCGGAAA</genome_strand>
        <mrna_strand>GAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGACCATTCTCCGGGGAAGCCCCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAATCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAATTGAAGGTGAAGGAAATTAAGAATGGACGTTTAGCTATGTTTTCTATGTTTGGATTCTTTGTTCAAGCTATTGTTACTGGAAAGGGTCCAATTGAGAACCTCTCTGACCACATTAACGACCCTGTGGCTAACAACGCTTTGGGCTTACGCCACAAACTTTGTACCCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592371" ref_strand="+" ref_description="SGN-U592371 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|81074613|gb|ABB55370.1| (e_value=4e-55) chlorophyll; (*ATH) AT1G29930.1 (e_value=2e-51)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=3e-56) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; ">
      <seq>aaacacaattcatttctttttattaatattaaatcatggctgcttctactatggctctttcttcctctgctttcgccggtaaagcggtaaaactctcaccatcttcttctgaaatcagtggaaatggtagaatcaccatgaggaagaccgttgccaagcctaagcctgcctcctctggtagcccatggtatggtcctgaccgtgttaagtacttgggcccattttctggtgaatcaccaagctatttgactggtgagttcccaggtgactacggatgggacactgctgggctttcagctgaccctgaaacattcgctaagaatcgtgagttggaggttattcattgcagatgggccatgcttggagctcttggttgagttttccctgagcttttggcccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45101" stop="46099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45395" g_stop="45799" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U592371" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45395" e_stop="45799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGT</genome_strand>
        <mrna_strand>AAACACAATTCATTTCT---T-TTTATTAATATTAAATCATGGCTGCTTCTACTATGGCTCTTTCTTCCTCTGCTTTCGCCGGTAAAGCGGTAAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGTAGAATCACCATGAGGAAGACCGTTGCCAAGCCTAAGCCTGCCTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTTTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCAGGTGACTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAATCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGAGCTCTTGGTTGAGTTTTCCCTGAGCTTTTGGCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590668" ref_strand="-" ref_description="SGN-U590668 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115825|sp|P07369|CB2G_SOLLC (e_value=4e-117) RecName:; (*ATH) AT1G29930.1 (e_value=6e-107)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=3e-118) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; ">
      <seq>aataatcttgtactgaacccataacccagaatgctttaaaaaactgaccctttttacagattcatctctcacaaagctaaaaactcataatctcacactaattggagaacagtttgttgcactcactttccgggaacaaagtttgtggcaaaagcccaggcgttgttgttaactgggtcagcaatgtggtcggcaaaagcctctgggtcttcagcaaggcccaatgggtcaaagctaccaccagggtaaagtggatcaacaacctcaccaagaggcccaccagcaatacggtaaccctcaacggctcccatcaacacaacttggcaagcccaaatagccaaaatgctttgtgcatgaaccaaactagggtttcccaagtagtcaagtccgccctcgctgaaaatttgagatccagctttgaaccatacagcttcaccaaacttaacaccgttacgtgccaaaagctcggggaaaacacatccaagagcaccaagcatggcccatctgcaatgaataacctccaactcacgattcttagcgaatgtttcagggtcagctgaaagcccagcagtgtcccatccgtaatcaccagggaactcaccagtcaaatagcttggggcttccccggagaatggtcccaagtacttaacacggtcaggaccataccatgggctaccagaggaagctggcttgggcttggcagcagtcttcctcattgtaattctcccatttccactgatttcagaagaagatggtgcgagtttcaccgtctttccggcgaaggtagaggaggaaagagccattgtagaagcagccatggtttaattttaatacgtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="46659" stop="45119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46359" g_stop="46168" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46167" i_stop="46060" i_length="108">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46059" g_stop="45413" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="839" r_length="647" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U590668" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590668" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46359" e_stop="46168"/>
          <exon e_start="46059" e_stop="45413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATCTTGTACTGAACCCATAACCCAGAATGCTTTAAAAAACTGACCCCTTCTACAGATTCATCTCTCACAAAGCTAAAAACTCATAATCTCACACTAATTGGAGAAGAGTTTGTTGCACTCACTTTCCGGGAACAAAGTTTGTGGCAAAAGCCCAGGCGTTGTTGTTAACTGGGTCAGCAATGTGGTCGGCAAGGTTCTCCAACGGACCCTTTCCGGTGACAATAGCTTGAACAAAGAATCCAAACATGGAGAACATAGCAAGTCTACCATTCTTGATCTCCTTCACCTTGAGCTCAGCAAAAGCCTCTGGGTCTTCAGCAAGGCCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGATCAACAACCTCACCAAGAGGCCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGGTTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTGGTGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGACCATACCATGGGCTACCAGAGGAAGCTGGCTTGGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCGTCTTTCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATGGTTTAATTTTAATAAATAAA</genome_strand>
        <mrna_strand>AATAATCTTGTACTGAACCCATAACCCAGAATGCTTTAAAAAACTGACCCTTTTTACAGATTCATCTCTCACAAAGCTAAAAACTCATAATCTCACACTAATTGGAGAACAGTTTGTTGCACTCACTTTCCGGGAACAAAGTTTGTGGCAAAAGCCCAGGCGTTGTTGTTAACTGGGTCAGCAATGTGGTCG............................................................................................................GCAAAAGCCTCTGGGTCTTCAGCAAGGCCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGATCAACAACCTCACCAAGAGGCCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGATTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTGGGGCTTCCCCGGAGAATGGTCCCAAGTACTTAACACGGTCAGGACCATACCATGGGCTACCAGAGGAAGCTGGCTTGGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCGTCTTTCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATGGTTTAATTTTAATACGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590177" ref_strand="-" ref_description="SGN-U590177 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115819|sp|P07370|CB2B_SOLLC (e_value=8e-87) RecName:; (*ATH) AT1G29930.1 (e_value=2e-80)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P27492|CB21_TOBAC (e_value=6e-88) Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16; ">
      <seq>acggaccctttccggtgacaatagcttgaacaaagaatccaaacatggagaacatagcaagtctaccattcttgatctccttcaccttgagctcagcaaaagcctctgggtcttcagcaaggcccaatgggtcaaagctaccaccagggtaaagtggatcaacaacctcaccaagaggcccaccagcaatacggtaaccctcaacggctcccatcaacacaacttggcaagcccaaatagccaaaatgctttgtgcatgaaccaaactagggtttcccaagtagtcaagtccgccctcgctgaaaatttgagatccagctttgaaccatacagcttcaccaaacttaacaccgttacgtgccaaaagctcggggaaaacacatccaagagcaccaagcatggcccatctgcaatgaataacctccaactcacgatttcttagcgaatgtttcagggtcagctgaaagcccagcagtgtcccatccgtaatcaccagggaactcaccagtcaaatagcttggggcttggcagcagtcttcctcattgtaattctcccatttccactgatttcagaagaagatggtgcgagtttcaccttctatccggcgaaggtagaggaggaaagagccattgtagaagcagccatggtttaattttaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="46454" stop="45118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46154" g_stop="45636" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45635" i_stop="45560" i_length="76">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45559" g_stop="45418" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="662" r_length="142" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U590177" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590177" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46154" e_stop="45636"/>
          <exon e_start="45559" e_stop="45418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGACCCTTTCCGGTGACAATAGCTTGAACAAAGAATCCAAACATGGAGAACATAGCAAGTCTACCATTCTTGATCTCCTTCACCTTGAGCTCAGCAAAAGCCTCTGGGTCTTCAGCAAGGCCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGATCAACAACCTCACCAAGAGGCCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACG-GTTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTGGTGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGACCATACCATGGGCTACCAGAGGAAGCTGGCTTGGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCGTCTTTCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATGGTTTAATTTTAATAA</genome_strand>
        <mrna_strand>ACGGACCCTTTCCGGTGACAATAGCTTGAACAAAGAATCCAAACATGGAGAACATAGCAAGTCTACCATTCTTGATCTCCTTCACCTTGAGCTCAGCAAAAGCCTCTGGGTCTTCAGCAAGGCCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGATCAACAACCTCACCAAGAGGCCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGATTTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTG............................................................................GGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCTTCTATCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATGGTTTAATTTTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592308" ref_strand="+" ref_description="SGN-U592308 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115825|sp|P07369|CB2G_SOLLC (e_value=8e-106) RecName:; (*ATH) AT1G29930.1 (e_value=6e-99)  Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=6e-107) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; ">
      <seq>gctaagagtttataatggctgcttctactatggctctttcctcctctactttcgccggtaaggcggtgaaactctcaccatcttcttctgaaatcagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagcctgcctcctctggtagcccatggtacggtcctgaccgtgttaagtacttgggcccattctctggtgaatcaccaagctatttgactggtgagttccctggtgattacggatgggacacggctgggctttcagctgaccctgaaacattcgctaagaatcgtgagttggaggttattcattgcagatgggccatgcttggtgctcttggatgtgttttccccgagcttttggcacgtaacggtgttaagtttggtgaagctgtatggttcaaagctggatctcaaattttcagcgagggcggacttgactacttgggaaaccctagtttggttcatgcacaaagcattttggctatttgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctgaagacccagaggcttttgctgagctcaaggtgaaggagatcaagaacggcagacttgctatgttctccatgtttggattctttgntcaagctattgtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45122" stop="46440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45420" g_stop="45971" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45972" i_stop="46040" i_length="69">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46041" g_stop="46141" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="653" r_length="101" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U592308" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45420" e_stop="45971"/>
          <exon e_start="46041" e_stop="46141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACC</genome_strand>
        <mrna_strand>GCTAAGAGTTTATAATGGCTGCTTCTACTATGGCTCTTTCCTCCTCTACTTTCGCCGGTAAGGCGGTGAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCTGCCTCCTCTGGTAGCCCATGGTACGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACGGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAATCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTG.....................................................................AAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGNTCAAGCTATTGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593153" ref_strand="-" ref_description="SGN-U593153 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|3036946|dbj|BAA25391.1| (e_value=2e-97) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris]; (*ATH) AT1G29920.1 (e_value=8e-94)  Symbol: None | chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180, identical to SP:P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar t... ; (*SWP) sp|P07370|CB2B_SOLLC (e_value=9e-99) Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B; ">
      <seq>acaaagaatcccaaacatggagaacatagcaagtctaccattcttgatctcattcaccgtgagctcagcaaaagcctttgggtcttcagcaaggcccaagggatcaaagctaccaccagcaatacggtaaccctcaacggctcccatcaacacaacttggcaagcccaaatagccaaaatgctttgtgcatgaaccaaactagggtttcccaagtagtcaagtccgccctcgctgaaaatttgagatccagctttgaaccatacagcttcaccaaacttaacaccgttacgtgccaaaagctcggggaaaacacatccaagagcaccaagcatggcccatctgcaatgaataacctccaactcacgattcttagcgaatgtttcagggtcagctgaaagcccagcagtgtcccatccgtaatcaccagggaactcaccagtcaaatagcttggggcttccccggagaatggtcccaagtacttaacacggtcaggaccataccatgggctaccagaggaaagctggcttgggcttggcagcagtcttcctcattgtaattctcccatttccactgatttcagaagaagatggtgcgagtttcaccgtctttccggcgaaggtagaggaggaaagagccattgtagaagcagccatggtctaaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="46425" stop="45125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46125" g_stop="46030" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46029" i_stop="45980" i_length="50">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.44"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45979" g_stop="45433" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="656" r_length="559" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U593153" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U593153" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46125" e_stop="46030"/>
          <exon e_start="45979" e_stop="45433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAAT-CCAAACATGGAGAACATAGCAAGTCTACCATTCTTGATCTCCTTCACCTTGAGCTCAGCAAAAGCCTCTGGGTCTTCAGCAAGGCCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGATCAACAACCTCACCAAGA---G------GC--CCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGGTTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTGGTGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGACCATACCATGGGCTACCAGAGG-AAGCTGGCTTGGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCGTCTTTCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATG</genome_strand>
        <mrna_strand>ACAAAGAATCCCAAACATGGAGAACATAGCAAGTCTACCATTCTTGATCTCATTCACCGTGAGCTCAGCAAAAGCCTTTGGGTCTTCAGCAAGGCCC..................................................AAGGGATCAAAGCTACCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGATTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTGGGGCTTCCCCGGAGAATGGTCCCAAGTACTTAACACGGTCAGGACCATACCATGGGCTACCAGAGGAAAGCTGGCTTGGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCGTCTTTCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591638" ref_strand="+" ref_description="SGN-U591638 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|81074613|gb|ABB55370.1| (e_value=2e-19) chlorophyll; (*ATH) AT1G29920.1 (e_value=7e-18)  Symbol: None | chlorophyll A-B binding protein 165/180, chloroplast / LHCII type I CAB-165/180, identical to SP:P04777 Chlorophyll A-B binding protein 165/180, chloroplast precursor (LHCII type I CAB-165/180) (LHCP) {Arabidopsis thaliana}; similar t... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=8e-21) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; ">
      <seq>tgcagtagtggaaatgggagaattacaatgaggaagactgctgccaagcccaagccagcttcctctggtagcccatggtatggtcctgaccgtgttaagtacttgggacctttctacggggaagcctcaagctattggactggtgagtaccctgatgattacggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45208" stop="45975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45508" g_stop="45675" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U591638" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>168</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45508" e_stop="45675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATG</genome_strand>
        <mrna_strand>TGCAGT-AGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGACCTTTCTACGGGGAAGCCTCAAGCTATTGGACTGGTGAGTACCCTGATGATTACGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591359" ref_strand="+" ref_description="SGN-U591359 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|914283|gb|AAB34067.1| (e_value=2e-17) light-harvesting complex b type 2, Lhcb2 [Ginkgo biloba, 3-4 week old seedlings, Peptide Partial, 130 aa]; (*ATH) AT3G27690.1 (e_value=2e-17)  Symbol: None | chlorophyll A-B binding protein (LHCB2:4), nearly identical to Lhcb2 protein (Arabidopsis thaliana) GI:4741950; similar to chlorophyll A-B binding protein 151 precursor (LHCP) GB:P27518 from (Gossypium hirsutum); contains Pfam PF00504... ; (*SWP) sp|P07370|CB2B_SOLLC (e_value=1e-17) Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B; ">
      <seq>gttcaaagctggatctcaggttttcagcgagggcggacttgactacttgggaaaccctagtttggtcatgcacaaagcattttggctatttgggcttgccaagttggttgatgggagccgtggggttaccgattgctggtgggcctcttgggaggttgtgatccactttaccctggggagctttgacccattggccttgctgaagacccagaggcttttgctggctaaggtgaaggagatcaagaatggagacttgctatgtctacatggtggattctttgttcaagctattgtaccggaaagggcctgtgagaaccttgctaccacattgctgacccagttaacaacaacgcctgggctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="45529" stop="46510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45829" g_stop="46210" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U591359" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.052" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45829" e_stop="46210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCGTTGGAGAACCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCTTTT</genome_strand>
        <mrna_strand>GTTCAAAGCTGGATCTCAGGTTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGG-TCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTG-GTTGATGGGAGCCG-TG-GGGTTACCG-ATTGCTGGTGGGCCTCTTGG-GAGGTTG-TGATCCACTTTACCCTGG-GG-AGCTTTGACCCATT-GGCCTTGCTGAAGACCCAGAGGCTTTTGCTG-GCT-AAGGTGAAGGAGATCAAGAATGG-AGACTTGCTATG-TCTACATG-GTGGATTCTTTGTTCAAGCTATTGT-ACCGGAAAGGG-CC-TGTGAGAACCTTG-CTACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565379" ref_strand="+" ref_description="SGN-U565379 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157359000|emb|CAO66902.1| (e_value=1e-86) unnamed; (*ATH) AT1G29370.1 (e_value=3e-65) | Symbol: None | kinase-related, similar to putative protein kinase (GI:11125348) (Homo sapiens); similar to Paired box protein Pax-8 (Swiss-Prot:P47240) (Canis familiaris) | chr1:10277876-10283184 REVERSE | Aliases: F15D2.28, F15D2_28; ">
      <seq>ggttgactgctaacgtgcatcctggtcgagagtctgagctttcatattctcctttttctacaacacaagcaatgcccacaaaatatggcaactcaatttcatcaatcagtggttcagctatgcctgaggctatgaagacagttggcttttcatcagcacagcctactcagcagatgctttctggaaatagtgtcgccacaggacctggcgtaccacaacacctaactgtacaccaatattctcaacaagctgttcctattgccccatatggcaacatgattagttatccctttgtgcctcagaactattcatatattccatctgcattccaacaagcatatcctggtaatagcagttaccatcagtcgcttgcagcaatgctcccccaatataagaataccgtttctgccagcagcttgcctcaatctgccactattccttctggatatggtgcttttggaaatacaacaagtatccccgggaacttcccaatcaacccccccgctgctccatctggtactaacttaagttacgatgatgtattaagtgctcagttcaaggataccaatcatttgatgtctcttcagcagaatgagaactcagctttgtggcttcatggacatggttcaagaacaatgccaactgttcccgccaacacgtattatggctttcagggacagaatcagcaaacgggcggatttaggcaaggccaacagccatcacagagctatggatctttggggggctacccacatttctacaattctcaggctggtatctcgttggaccaacaacagcaagaaaaccttcgagatggatcgttgtctggttcacaaggccagccaaagcagtctcaacaacagttatggcaaaacggctactaaatcttactgcctcccatgtttttctgttctttctttttttggggtcttgtaatgagtgtgaaagtggcctttccagctctctctgttgaaataaccctcgttcacgatccctgaagaaacttgactgggtgctgccctgtgccatgactctgtactttacgtgtttatctcagatttaaatgtaacgtaggtaatgtctgagctaacacagtgctctagtcgtctcgtctgtgttttttcttctagctcttgtttaacacggttaaccccccttttcgtcgtttttaatctatagttgctagtgttttgtttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="50175" stop="46523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49876" g_stop="49749" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49748" i_stop="48427" i_length="1322">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48426" g_stop="47965" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="590" r_length="462" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47964" i_stop="47431" i_length="534">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47430" g_stop="46823" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="1199" r_length="609" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U565379" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1198</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49876" e_stop="49749"/>
          <exon e_start="48426" e_stop="47965"/>
          <exon e_start="47430" e_stop="46823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGACTGCTAACGTGCATCCTGGTCGAGAGTCTGAGCTTTCATATTCTCCTTTTTCTACAACACAAGCAATGCCCACAAAATATGGCAACTCAATTTCATCAATCAGTGGTTCAGCTATGCCTGAGGTAATGTTTCTGCTGGAATCTAATCAAATATTGCAGATATCTTTCTATCCTACCCTCAGCTGTAGTGTTGGTACCTTTACCCGCAGACATATTGACCTTAACTAGGACTGTTTTATAATGAATTGAGGGAAAAATTGACCATTTTGATTTTTAGTAAAAATATACAAGTGATTATGCTTGATTTCCAGGCAGGTAAGATGAGTTTGAACAGTAAGGGTCTAGCGAAAAGCTGGTTGTATTGTTTTTCTCCTGATGAAGTAAATTGTTCATGAACGAGAAGATGACTACTGTTTAACATTAGTAAAGTTATGAGTCTTGAGGCTTTGAGCCCCCATCCCCCCCCCCCCCCCCCAACCGTATTTTTTCAATTAACTAGAATGTATCAACAAAAGGACGGAATATTTATGAAGTTATAAAATTAACATAATAAAATAAATGAAGTAATGAAATGAATTATTGGGATTTATTATCTCTTGAAGTCCCAATATACATTCTGTATTTTGAAATTCCCCTCTAATGCATGTCAATATCCATTCTTGAACAAATTCGTATCCGCACAAACACCCTCTTTCCAACTCTCCCTGAAAGAGTTATTGGTCATGGCTTTTCTTAGAGTATTTTGAATGCTAAATTCGGGGCAATCAAGTATAACTGGTGGAGGAGAGAGGTGCAGTGTTATATAGTAAAACGAGGTTGGATTTGGTTTTTAACATTTTCGCAAGTATTAAGTCAGGTTCTCAGAAGTACACTTTTGTTTTCTGAAGGAAGCTTTTCGTTTGGATTGTTCTGATCGTCCCAAAAAAATAAAGTTATAGGTTTAAGCATTTAAAAGGTTCAGTATTTTCTACAAATATTGATCATAGTTCAGATACATCTTAAATGTGGTTCCTCTAAGTGATGTGTTGCTTTAGTTTGATCGGTGATTCATATTCTGGCCAGTGTGTTGTCTATCACAACTCTGTATAATATGAATTGGTGACTTGAGACGGGGAAAGCATTATACATCCTATTTTTCCCCTTTCAAAGTTGGTGCGATATTTTTCTCCCTTCTCTTGTTTTTGTGGTGTGTAATGGTTGACTGTGTCCTCTTCTATCTTTTGTGTAATGCACTCAAGTGCTCATATCTGTATCTCCCCCTTTTCCAACTGTTTGGAATGCCTTGTTTAAGCTGAGGGTCTATCGGAAACAACCTCTCTATCTCTACTAGTTGTACAAGATAGGGGTAAGGTCTGCGTACCCTCTATCCTTCCCAGACCCCACTTGTGGGATTGCATTGAGTATGTTGTCGTTGTAATAATTGACAGTGTTAGTGTTTCCTGCAGGCTATGAAGACAGTTGGCTTTTCATCAGCACAGCCTACTCAGCAGATGCTTTCTGGAAATAGTGTCGCCACAGGACCTGGCGTACCACAACACCTAACTGTACACCAATATTCTCAACAAGCTGTTCCTATTGCCCCATATGGCAACATGATTAGTTATCCCTTTGTGCCTCAGAACTATTCATATATTCCATCTGCATTCCAACAAGCATATCCTGGTAATAGCAGTTACCATCAGTCGCTTGCAGCAATGCTCCCCCAATATAAGAATACCGTTTCTGCCAGCAGCTTGCCTCAATCTGCCACTATTCCTTCTGGATATGGTGCTTTTGGAAATACAACAAGTATCCCCGGGAACTTCCCAATCAACCCCCCTGCTGCTCCATCTGGTACTAACTTAAGTTACGATGATGTATTAAGTGCTCAGTTCAAGGATACCAATCATTTGATGTCTCTTCAGCAGGTATCCTTTTCTTTTTGTGAGCACACATATTCCTACTGAACTCTCTCTCCAAGAAATTGCTTGTCATGACTCATCATAATGTGAAATGACCGTTTGAATAGCTACTGTCAGGGCGTCAGGGGTAGCAAAATCAGCCCAAGTGAACATGATCCCCTCAACCCGTTCTACATTTATTAGTTCAGCCCATTTTAGTCCCACCCGTTTCAGCCAATCTACGAATTGAAATTGACCGATAGAAACTGTCATAATATTTTCAAAAATACATTTTTTTGTTGGTTATGTTATATAAAACCATTCACTTTTAATTCCATTTCAGCGCAAGTGGTTTTTGGGCAGGTCATGATCCACTTTTTAGTCTATTCCCCCCATTTGACGCCTCTAGCTTCTGTGTTTGTTTGGTCAATTGCATTTGTCAATGTCCACCTTGGTGGTTGGCGCAGCATGTCTGAAATGCTCTGTAATTTCAATTTGTCATTGACTTTATCTGGCATGTCCTTTGCTTTATTTGACACTCCTGTTTCCGTCCTCTTTCAGAATGAGAACTCAGCTTTGTGGCTTCATGGACATGGTTCAAGAACAATGCCAACTGTTCCCGCCAACACGTATTATGGCTTTCAGGGACAGAATCAGCAAACGGGCGGATTTAGGCAAGGCCAACAGCCATCACAGAGCTATGGATCTTTGGGGGGCTACCCACATTTCTACAATTCTCAGGCTGGTATCTCGTTGGACCAACAACAGCAAGAAAACCTTCGAGATGGATCGTTGTCTGGTTCACAAGGCCAGCCAAAGCAGTCTCAACAACAGTTATGGCAAAACGGCTACTAAATCTTACTGCCTCCCTTGTTTTTCTGTTCTTTCTTTTTTTGGGGTCTTGTAATGAGTGTGAAAGTGGCCTTTCCAGCTCTCTCTGTTGAAATAACCCTCGTTCACGATCCCTGAAGAAACTTGACTGGGTGCTGCCCTGTGCCATGACTCTGTACTTTACGTGTTTATCTCAGATTTAAATGTAACGTAGGTAATGTCTGAGTTAACACAGTGCTCTAGTCGTCTCGTCTGTGTTTTTTCTTTTAGCTCTTGTTTAACACGGTTAACCCCCCTTTTCGTCGTTTTTAATCTATAGTTGCTAGTGTTTT-TTTCCC</genome_strand>
        <mrna_strand>GGTTGACTGCTAACGTGCATCCTGGTCGAGAGTCTGAGCTTTCATATTCTCCTTTTTCTACAACACAAGCAATGCCCACAAAATATGGCAACTCAATTTCATCAATCAGTGGTTCAGCTATGCCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGAAGACAGTTGGCTTTTCATCAGCACAGCCTACTCAGCAGATGCTTTCTGGAAATAGTGTCGCCACAGGACCTGGCGTACCACAACACCTAACTGTACACCAATATTCTCAACAAGCTGTTCCTATTGCCCCATATGGCAACATGATTAGTTATCCCTTTGTGCCTCAGAACTATTCATATATTCCATCTGCATTCCAACAAGCATATCCTGGTAATAGCAGTTACCATCAGTCGCTTGCAGCAATGCTCCCCCAATATAAGAATACCGTTTCTGCCAGCAGCTTGCCTCAATCTGCCACTATTCCTTCTGGATATGGTGCTTTTGGAAATACAACAAGTATCCCCGGGAACTTCCCAATCAACCCCCCCGCTGCTCCATCTGGTACTAACTTAAGTTACGATGATGTATTAAGTGCTCAGTTCAAGGATACCAATCATTTGATGTCTCTTCAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAACTCAGCTTTGTGGCTTCATGGACATGGTTCAAGAACAATGCCAACTGTTCCCGCCAACACGTATTATGGCTTTCAGGGACAGAATCAGCAAACGGGCGGATTTAGGCAAGGCCAACAGCCATCACAGAGCTATGGATCTTTGGGGGGCTACCCACATTTCTACAATTCTCAGGCTGGTATCTCGTTGGACCAACAACAGCAAGAAAACCTTCGAGATGGATCGTTGTCTGGTTCACAAGGCCAGCCAAAGCAGTCTCAACAACAGTTATGGCAAAACGGCTACTAAATCTTACTGCCTCCCATGTTTTTCTGTTCTTTCTTTTTTTGGGGTCTTGTAATGAGTGTGAAAGTGGCCTTTCCAGCTCTCTCTGTTGAAATAACCCTCGTTCACGATCCCTGAAGAAACTTGACTGGGTGCTGCCCTGTGCCATGACTCTGTACTTTACGTGTTTATCTCAGATTTAAATGTAACGTAGGTAATGTCTGAGCTAACACAGTGCTCTAGTCGTCTCGTCTGTGTTTTTTCTTCTAGCTCTTGTTTAACACGGTTAACCCCCCTTTTCGTCGTTTTTAATCTATAGTTGCTAGTGTTTTGTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589503" ref_strand="+" ref_description="SGN-U589503 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157359000|emb|CAO66902.1| (e_value=1e-30) unnamed; (*ATH) AT1G29350.1 (e_value=1e-10) | Symbol: None | expressed protein | chr1:10268455-10273774 REVERSE | Aliases: F15D2.27, F15D2_27; ">
      <seq>gcgggtttgccatctgatggggatagtccatctgttgtgattccagaccatcttcaggttcaaacagctgactgctcacacctaagttttggtagctttggtggtgtgtccttctctggatcactggcctctgcccccgtgaaaactagcttggaagatgcatccagagatgcagatagttcttcagttgggcacttgggcaccagggccactgaatactatggtgatggtactctcagaaatgaggctgatagtaatttattccacagaaataatgcaaatgctggaaattatgaactgccagcagcttcacaaccagaatctctgaaagcagaagctagtgatgggcattattcatatccgtcctctgctgctggctattcatacgaaagtgctcaacaattgaatgcagcgtttagtcagccacagacgagttctcatatgcaaaatcttgcttctttctcaaatgagacagtctacacaaattctttgcagagtgacatgttgactgctaacgtgcatcctggtcgagagtctgagctttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="-" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="52917" stop="49532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52617" g_stop="52412" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52411" i_stop="51889" i_length="523">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51888" g_stop="51621" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="474" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51620" i_stop="49905" i_length="1716">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49904" g_stop="49832" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="547" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="-" ref_id="SGN-U589503" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52617" e_stop="52412"/>
          <exon e_start="51888" e_stop="51621"/>
          <exon e_start="49904" e_stop="49832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGGTTTGCCATCTGATGGGGATAGTCCATCTGTTGTGATTCCAGACCATCTTCAAGTTCAAACAGCTGACTGCTCACACCTAAGTTTTGGTAGCTTTGGTGGTGTGTCCTTCTCTGGATCACTGGCCTCTGCCCCCGTGAAAACTAGCTTGGAAGATGCATCCAGAGATGCAGATAGTTCTTCAGTTGGGCACTTGGGCACCAGGTTTACCTTCTTTTTAGTTGATCATTTCCTTTTAGTCTTCTGAGTTACTAAATTAATTATTTGCATATAATATACTGTGGAAGTTGTGTGTTTATGATATGCTAATTGAGAACTCTAGCCAACTCTTTCTGTACGTGGACAATGATATTAAAAAGTTCTTCAATCATTTATTTTGTCGTGTAGGATTGTCTTCTTTATCGGTTGCTTGTAGATTTTTCTCATTTTATAAATAAATGACATCAATCGAGTATCCTTGCATCAATCCTGTCTTGTTTTACTTATTGGGTTTTCAAGAATTGTTCCATATTTTAGTCAACCAAATAGTAATATTAGCTTGCAGCTCTTTTCCATTTATGAAATCTTTGTTTGATGCACTTAAATGATTTTATGATGTAGTATACAATGCTCTCTTTGTCATTATGTAAAGCTTGTATGCCAATAAATTTTTTTGAAGGAGAGGTCTTGTATGCAAAGCAACAGGGGGAAATGCTAGTCTTTAATTGTAAACTTACATATTTTACAGGGCCACTGAATACTATGGTGATGGTACTCTCAGAAATGAGGCTGATAGTAATTTATTCCACAGAAATAATGCAAATGCTGGAAATTATGAACTGCCAGCAGCTTCACAACCAGAATCTCTGAAAGCAGAAGCTAGTGATGGGCATTATTCATATCCGTCCTCTGCTGCTGGCTATTCATACGAAAGTGCTCAACAATTGAATGCAGCGTTTAGTCAGCCACAGACGAGTTCTCATATGCAAAATCTTGCTTCTTTCTCAAATGAGACAGTAAGAATTTTTTCTGCCTTTTGTTCAGGATATCAAATGGTTTCATGTACTATCCTTGGGATGCACTTTCTGTTAGTTTTGACCAAATGTTAGAACTTCGATAAAATTATGTTTTCCCAAGTTTGAAGATGACTTCAGTGCAAGTGTATGCTATGCATGAGACAAGGAAATGCTGCAGCAGGAGTTGCAGTGCTGGTAATTGCTATTCTGTTCTGGGTTGTTTGGGATGGGGGATGGGCTGGCAAAGTTATCCCATGGGATAGTTATCCCACCATATATATGGGATAATTTATCCCATCATTATAGTAGCAATGGTGGGATAAATACTCCCGGGACTAACCAATATCCCTAACCAAACACAATATAAAATAATCCTGCATTTTGTCCCGGGATTATTATTCCTTTTCTCTCATACCAAATGACCCCTTAATTTTGAGTTATATGAGTGATGTCGAGACACGGGATGGCTGCAGTGCGAGTTGCAGACTTCGTAATTGCTATTTTGTATATTTGAGTGATGAGTGGCATTTAATATGGAGCTTAGTTGGCTTTATATTCTGCCACTATCTGATTGTGTAGGCTTTCTTTTCGATTGGAGGGATGGATATACAAGGAAAGGTTTGGCATGACTTATTTTGGTTAGGTGTTCAATTGTGCTTGAGAGCTCTGTTATATATTCCACATTAGAAGAAAAAACAGAACTTTTTTAAGTCATAGGCAATACTTCTCTTTTACCCGGCTTACTTCTTTTGAACTTTAGCTTTGTAATTAAATAATATTCAAGAACTTTAGCTTTTGAGGAAAAGAGTCCTTTAGTCCTTGCAAGTCTTCTTTACTGCGTAGGCGCTCTCATTTCTTTGGTTCCTTTACTAATGGGTAACAGCTTGTCATAACAGTGGTTGATACTGTTTAATCTGTATTTGAAGTGCTCAACACAATATGCTGGTTGCAAGCTTGTAACTAATAAGATATGCGTGTAATATAGTTTAGCCACTCGACATGGCATGTTTTGCTATTTTCACAAATTGGCTAGTCTTTTAATAATAAAAAGAACTTTCGAATAGGTTGTGAAACAAATAAGAGGTTCCTTATGTTGGTGTGTAGGCTACTTGAAATAGCTTATGGAAATTTTCCTAATTACTGGATTCCTTATAATAACATGGTATTTTTTCATATATTGGAAACATATCTAGTTTTCCATTTTAAAAAACTATGTTACAGCCTAGAAACATTCTAAACATATAATAGTGTTAATTCACTTGACCCTCATTTATTATGAGTCCAGCGTAGCTAAACTATTTGCGAACTTTGTATAGAAAAGTAAGTGCCTGCTTGGTGCTCTATGTTGAATAATATTTCATCCAATAATAAACTTCTAATTAGCTAAACATATGTAATGCCCAAAAGCAAAGAAGCATGACAAAAGAAGGGCAGCCCGGTGTACAAAACATCACACGTTGGAAGGGACGCTTCTCAATGCGTGTGATGTAGACAACCTACCCTAATGCAAGCATTAGTGGTTGCTTCCACTTCTCAAACCCGTGTGACCTATAGGTCACATGGAGACAACTTCAATAAAGAAGCATGTCACTTGTCAATTTTTTTTATTAAAAAACTACAGTAGCATGCCAACATGATCCGAGTTACCATTATTTGCTAGAGCATAATATCCATGTTTTACCTAATTTGCTCTCTTGCTATTTTTTGTTCGAGTAGGTCTACACAAATTCTTTGCAGAGTGACATGTTGACTGCTAACGTGCATCCTGGTCGAGAGTCTGAGCTTTCAT</genome_strand>
        <mrna_strand>GCGGGTTTGCCATCTGATGGGGATAGTCCATCTGTTGTGATTCCAGACCATCTTCAGGTTCAAACAGCTGACTGCTCACACCTAAGTTTTGGTAGCTTTGGTGGTGTGTCCTTCTCTGGATCACTGGCCTCTGCCCCCGTGAAAACTAGCTTGGAAGATGCATCCAGAGATGCAGATAGTTCTTCAGTTGGGCACTTGGGCACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACTGAATACTATGGTGATGGTACTCTCAGAAATGAGGCTGATAGTAATTTATTCCACAGAAATAATGCAAATGCTGGAAATTATGAACTGCCAGCAGCTTCACAACCAGAATCTCTGAAAGCAGAAGCTAGTGATGGGCATTATTCATATCCGTCCTCTGCTGCTGGCTATTCATACGAAAGTGCTCAACAATTGAATGCAGCGTTTAGTCAGCCACAGACGAGTTCTCATATGCAAAATCTTGCTTCTTTCTCAAATGAGACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACACAAATTCTTTGCAGAGTGACATGTTGACTGCTAACGTGCATCCTGGTCGAGAGTCTGAGCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575381" ref_strand="+" ref_description="SGN-U575381 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|18399963|ref|NP_565535.1| (e_value=1e-25) expressed protein [Arabidopsis thaliana]; (*ATH) AT2G22425.2 (e_value=9e-28) |; (*SWP) sp|Q944J0|SPCS1_ARATH (e_value=7e-27) Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425; ">
      <seq>cttattattacaattttacttttcttttacctcctcctctcttctccgtcttcaatcgccgccgatggattggcaaggacaaaagctcgtggaacaattgatgcagatactgcttgtgagctttggtgtggtagcattcctcacaggctatatgttgggcacgttccaaactatgctgttaacatacgctggtggtgttgtctttacggcccttctcaccatacctaactggcctgtctataatcgcaaccctctcaattggttggacccaagtgtagtcgagaagtatcccaaaccactgcctgctactactggttccaagaagaagagcactaagaagtaggtcatttgactgatattccgctgacatatcacttggtctttctacagaaaactattatgatgtatcaaatacagtcggtggttttttggtatgagctgaacgttttatgctctcggtgaattttgtcagtgctataagaaagatttagttttgatattgttgtgccatttctcttctattcctaaattttatatgtgaactgcctatttatttgcatatcatctgaaaataaccggtctctatccaaacacaagttgtgtttggatgaaaggactataagtaattttgatttcctgtgaann</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0103M17-dEhWY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0103M17.2" temp_strand="+" temp_description="C00SLm0103M17.2  CU468238.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0103M17 sequenced_by:sanger upload_account_name:uk">
        <position start="62648" stop="65082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62940" g_stop="63005" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63006" i_stop="64204" i_length="1199">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64205" g_stop="64785" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="645" r_length="581" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0103M17.2" gen_strand="+" ref_id="SGN-U575381" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0103M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62940" e_stop="63005"/>
          <exon e_start="64205" e_stop="64785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTACAATACAATTTTACTTTTCTTTTACCTCCTCCTCTCTTCTCCGTCTTCAATCGCCGCCGGTGAGTATTACCTGAACTCTTTCTATTCTATTTCCGTTCAGTTTTGTTGTCTGTATATTAGTTTTCTTCTGTTGATCAGTTTTCTGCATAATTGACATTGTCGTTATAGCTGTGCGCTATTTTTTTTTAGGGTTTTTTTATTTTTACGGGTTTTATTTTATCACATGTTCGATTTATATCCAGATCCAATCAATTGTGCTTTGCCTTGGAAATCTGTTAAGTCAATCAGGCTAATTTCTGTCAATTTTGATTTAGATTTTGTTGTTTGCCGATCCGAACTTGTCTGGGACTGAATTGTAGTTGTTGATGTTGTGGTTTGTTGCTGAAGTGTTACATAGTTCTGGATATACAAATTGTTGACTTATTTTGTTGGGGAAGAAATTGGGAAAAATGAAGATTTCCAAGTTAATCATAAAAGCTTTTTTGAACTGAGAAAAGATTCAAGTTTTAGTAATTTGTCGTTCTGTTGGAGCTATATTGCTTGGATCCCCATAAAAATGCATAAATTTGGACTCATTAGAAAAAAAAAGCAAACTTTTGGAGTATGTGACACATAGGGAGTAATCTCTGATAATCCGAGTAATATATTGTTGGAGAGTTTAATAAGGAAAAGTAAATCTGTGATTCACTGAAGATTTATATAAACATACTAACATAGTGGATATAGAGGTAGTTTGAGATTTGTACCTTTGTATGCATTTTGTCTGATTGAGTTTCAGAATTATTGGCTCTTTTGGAACTGACGTAGAACGTGGATGTTGAGAATTACTTTTTATCACGTAGAAAGAGGATTAACCGATTAAGTCACAATTGAAACAAAAGGAACAATAAAGGTTATGCCAACTAGTTGAATTATAGCTCAGTTTTTGTTATGCTTACATTATGTGTCCTATGTTTGCCAAGAGTCCCTTGTTAGTCTTGTTAGAAACTTACAAGTTAGTCTATGTACCGATAAATGTGGGATTAAGCATTCTCTATTTGAAGGGAAGTCTATTATGCTTTAGAAAGTATATTATCTTATGTTGGGTGAAGTCACTGAATAAAGAAAGATTTATATAATCGATCCTAACTAGTTTGTGAGTTGGGAGTTGGGACTAATGGATAGTTGATTGGATGGATAGATCAAGTATATACTTCTATTCTTCTTGTTTTGTGATAATGTGCAGTTTTATCATTTGTTTTTGTGCCGTCTATTGTAGATGGATTGGCAAGGACAAAAGCTCGTGGAACAATTGATGCAGATACTGCTTGTGAGCTTTGGTGTGGTAGCATTCCTCACAGGCTATATGTTGGGCTCGTTCCAAACTATGCTGTTAACATACGCTGGTGGTGTTGTCTTTACGGCCCTTCTCACCATACCTAACTGGCCTGTCTATAATCGCAACCCTCTCAATTGGTTGGACCCAAGTGTAGTCGAGAAGTATCCCAAACCACTGCCTGCTACTACTGGTTCCAAGAAGAAGAGCACTAAGAAGTAGGTCATTTGACTGATATTCCGCTGACATTTCACTTGGTCTTTCTACAGAAAACTATTATGATGTATCAAATACAGTCGGTGGTTTTTTGGTATGAGCTGAACGTTTTATGCTCTCGGTGAATTTTGTCAGTGCTATAAGAAAGATTTAGTTTTGATATTGTTGTGCCATTTCTCTTCTATTCCTAAATTTTATATGTGAACTGCCTATTTATTTGCATATCATCTGAAAATAACCGGTCTCTATCCAAACACAAGTTGTGTTTGGATGAAAGGACTATAAGTAATTTTGATTTCCTGCGATGG</genome_strand>
        <mrna_strand>CTTATT--ATTACAATTTTACTTTTCTTTTACCTCCTCCTCTCTTCTCCGTCTTCAATCGCCGCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATTGGCAAGGACAAAAGCTCGTGGAACAATTGATGCAGATACTGCTTGTGAGCTTTGGTGTGGTAGCATTCCTCACAGGCTATATGTTGGGCACGTTCCAAACTATGCTGTTAACATACGCTGGTGGTGTTGTCTTTACGGCCCTTCTCACCATACCTAACTGGCCTGTCTATAATCGCAACCCTCTCAATTGGTTGGACCCAAGTGTAGTCGAGAAGTATCCCAAACCACTGCCTGCTACTACTGGTTCCAAGAAGAAGAGCACTAAGAAGTAGGTCATTTGACTGATATTCCGCTGACATATCACTTGGTCTTTCTACAGAAAACTATTATGATGTATCAAATACAGTCGGTGGTTTTTTGGTATGAGCTGAACGTTTTATGCTCTCGGTGAATTTTGTCAGTGCTATAAGAAAGATTTAGTTTTGATATTGTTGTGCCATTTCTCTTCTATTCCTAAATTTTATATGTGAACTGCCTATTTATTTGCATATCATCTGAAAATAACCGGTCTCTATCCAAACACAAGTTGTGTTTGGATGAAAGGACTATAAGTAATTTTGATTTCCTGTGAANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>29</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="14893" PGL_stop="19150"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14893" e_stop="15243"/>
            <exon e_start="17012" e_stop="17103"/>
            <exon e_start="17893" e_stop="18030"/>
            <exon e_start="18112" e_stop="18168"/>
            <exon e_start="18248" e_stop="18320"/>
            <exon e_start="18406" e_stop="18468"/>
            <exon e_start="19117" e_stop="19150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.642" e_score="1.000"/>
          <exon-intron don_prob="0.640" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.698" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.623" e_score="0.959"/>
          <exon-intron don_prob="0.284" acc_prob="0.001" e_score="0.937"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14893" e_stop="15243" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.642">
            <gDNA_intron_boundary i_start="15244" i_stop="17011" i_length="1768"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17012" e_stop="17103" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.640" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17104" i_stop="17892" i_length="789"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17893" e_stop="18030" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.982">
            <gDNA_intron_boundary i_start="18031" i_stop="18111" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18112" e_stop="18168" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.882" acc_prob="0.698">
            <gDNA_intron_boundary i_start="18169" i_stop="18247" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="0.959">
            <gDNA_exon_boundary e_start="18248" e_stop="18320" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.910" acc_prob="0.623">
            <gDNA_intron_boundary i_start="18321" i_stop="18405" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="0.937">
            <gDNA_exon_boundary e_start="18406" e_stop="18468" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.284" acc_prob="0.001">
            <gDNA_intron_boundary i_start="18469" i_stop="19116" i_length="648"/>
          </intron>
          <exon e_serial="7" e_score="0.971">
            <gDNA_exon_boundary e_start="19117" e_stop="19150" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14893" stop="15243"/>
              <exon start="17012" stop="17103"/>
              <exon start="17893" stop="18030"/>
              <exon start="18112" stop="18168"/>
              <exon start="18248" stop="18320"/>
              <exon start="18406" stop="18468"/>
              <exon start="19117" stop="19150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTCTTCCGTAAAACCTCACTAATAGTTGACAATTGATGAAGCAATCCATCAAAACGACGTCGTTTTTGAACCTTCATTGCTTCAGATCTCTTCTTCTTCACCATTTCTATAACTGCTCATTTCAAATCTTCTTCTTATATATAAATTGCTCATTTCAAATCTTCTTCTTATATATAAATTCATCATTCTCGTAAATATATACATATTGATGATACGTTTGATTTTGTATACATATATATATTGTTGAACAATTGAATTTTGATTCGGATTTGGTGAGGTATTGTTTCTGTTTTGTAGTTGACGATTTTTGAAAATGCCGGCGGTTTCTGGACCTGTAACGCCAGGACAG : GTGTCATTTTTGCTTGGATATATACCTGTCCTCATCGCATGGATATATGCTGAGTGGTTGGAGTACAAGAAGTGGTTGTTTCCCTTTAAAGT : TCATTCAGATAATAATCTGGATGAACTTGAGATCTCAACAACCAAGGAAGAAGATCGAGCTGTCTTACTGGAAGGAGGTCTGTCAAAATCTGCATCTGTGAAGTTGTCAAGTTCATCGGTAAAAACAAACATAATTAG : GTTTTTAACAATGGAGGATGCGTTTTTGCTAGAAAATCGTGCTACTCTAAGAGCAAT : ATCTGAATTTGGGGGAATCCTGTTTTATTATTATCTCTGTGACCGTACAAATCTCTTTGCAGATTCTACTAAG : GTTATTTGCATCATAACAACTATTGGATCACCTTATGGAATAAAAGCATACAAGCACTTTGAG : AGCTACAATCGTGATCTCTTCATCTTTCTGTATA</gDNA_template>
            <first_frame> V  S  S  V  K  P  H  *  *  L  T  I  D  E  A  I  H  Q  N  D  V  V  F  E  P  S  L  L  Q  I  S  S  S  S  P  F  L  *  L  L  I  S  N  L  L  L  I  Y  K  L  L  I  S  N  L  L  L  I  Y  K  F  I  I  L  V  N  I  Y  I  L  M  I  R  L  I  L  Y  T  Y  I  Y  C  *  T  I  E  F  *  F  G  F  G  E  V  L  F  L  F  C  S  *  R  F  L  K  M  P  A  V  S  G  P  V  T  P  G  Q  :  V  S  F  L  L  G  Y  I  P  V  L  I  A  W  I  Y  A  E  W  L  E  Y  K  K  W  L  F  P  F  K  V :   H  S  D  N  N  L  D  E  L  E  I  S  T  T  K  E  E  D  R  A  V  L  L  E  G  G  L  S  K  S  A  S  V  K  L  S  S  S  S  V  K  T  N  I  I  R :   F  L  T  M  E  D  A  F  L  L  E  N  R  A  T  L  R  A  I :   S  E  F  G  G  I  L  F  Y  Y  Y  L  C  D  R  T  N  L  F  A  D  S  T  K  :  V  I  C  I  I  T  T  I  G  S  P  Y  G  I  K  A  Y  K  H  F  E  :  S  Y  N  R  D  L  F  I  F  L  Y  </first_frame>
            <second_frame>  S  L  P  *  N  L  T  N  S  *  Q  L  M  K  Q  S  I  K  T  T  S  F  L  N  L  H  C  F  R  S  L  L  L  H  H  F  Y  N  C  S  F  Q  I  F  F  L  Y  I  N  C  S  F  Q  I  F  F  L  Y  I  N  S  S  F  S  *  I  Y  T  Y  *  *  Y  V  *  F  C  I  H  I  Y  I  V  E  Q  L  N  F  D  S  D  L  V  R  Y  C  F  C  F  V  V  D  D  F  *  K  C  R  R  F  L  D  L  *  R  Q  D  R :   C  H  F  C  L  D  I  Y  L  S  S  S  H  G  Y  M  L  S  G  W  S  T  R  S  G  C  F  P  L  K   : F  I  Q  I  I  I  W  M  N  L  R  S  Q  Q  P  R  K  K  I  E  L  S  Y  W  K  E  V  C  Q  N  L  H  L  *  S  C  Q  V  H  R  *  K  Q  T  *  L   : G  F  *  Q  W  R  M  R  F  C  *  K  I  V  L  L  *  E  Q   : Y  L  N  L  G  E  S  C  F  I  I  I  S  V  T  V  Q  I  S  L  Q  I  L  L  R :   L  F  A  S  *  Q  L  L  D  H  L  M  E  *  K  H  T  S  T  L  R :   A  T  I  V  I  S  S  S  F  C  I </second_frame>
            <third_frame>   L  F  R  K  T  S  L  I  V  D  N  *  *  S  N  P  S  K  R  R  R  F  *  T  F  I  A  S  D  L  F  F  F  T  I  S  I  T  A  H  F  K  S  S  S  Y  I  *  I  A  H  F  K  S  S  S  Y  I  *  I  H  H  S  R  K  Y  I  H  I  D  D  T  F  D  F  V  Y  I  Y  I  L  L  N  N  *  I  L  I  R  I  W  *  G  I  V  S  V  L  *  L  T  I  F  E  N  A  G  G  F  W  T  C  N  A  R  T   : G  V  I  F  A  W  I  Y  T  C  P  H  R  M  D  I  C  *  V  V  G  V  Q  E  V  V  V  S  L  *  S  :  S  F  R  *  *  S  G  *  T  *  D  L  N  N  Q  G  R  R  S  S  C  L  T  G  R  R  S  V  K  I  C  I  C  E  V  V  K  F  I  G  K  N  K  H  N  *  :  V  F  N  N  G  G  C  V  F  A  R  K  S  C  Y  S  K  S  N  :  I  *  I  W  G  N  P  V  L  L  L  S  L  *  P  Y  K  S  L  C  R  F  Y  *   : G  Y  L  H  H  N  N  Y  W  I  T  L  W  N  K  S  I  Q  A  L  *   : E  L  Q  S  *  S  L  H  L  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15196" stop="15243"/>
                    <exon start="17012" stop="17103"/>
                    <exon start="17893" stop="18030"/>
                    <exon start="18112" stop="18168"/>
                    <exon start="18248" stop="18320"/>
                    <exon start="18406" stop="18468"/>
                    <exon start="19117" stop="19149"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFLKMPAVSGPVTPGQVSFLLGYIPVLIAWIYAEWLEYKKWLFPFKVHSDNNLDELEISTTKEEDRAVLLEGGLSKSASVKLSSSSVKTNIIRFLTMEDAFLLENRATLRAISEFGGILFYYYLCDRTNLFADSTKVICIITTIGSPYGIKAYKHFESYNRDLFIFLY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="20774" PGL_stop="22288"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20774" e_stop="20839"/>
            <exon e_start="20930" e_stop="21016"/>
            <exon e_start="21114" e_stop="21202"/>
            <exon e_start="21399" e_stop="21461"/>
            <exon e_start="21651" e_stop="21707"/>
            <exon e_start="21815" e_stop="21911"/>
            <exon e_start="21999" e_stop="22157"/>
            <exon e_start="22272" e_stop="22288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.523" acc_prob="0.996" e_score="0.985"/>
          <exon-intron don_prob="0.153" acc_prob="0.977" e_score="0.989"/>
          <exon-intron don_prob="0.988" acc_prob="0.986" e_score="0.978"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.758" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="20774" e_stop="20839" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.523" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20840" i_stop="20929" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="20930" e_stop="21016" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.153" acc_prob="0.977">
            <gDNA_intron_boundary i_start="21017" i_stop="21113" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="21114" e_stop="21202" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.986">
            <gDNA_intron_boundary i_start="21203" i_stop="21398" i_length="196"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21399" e_stop="21461" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="21462" i_stop="21650" i_length="189"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21651" e_stop="21707" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="21708" i_stop="21814" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="21815" e_stop="21911" e_length="97"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.987">
            <gDNA_intron_boundary i_start="21912" i_stop="21998" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="21999" e_stop="22157" e_length="159"/>
          </exon>
          <intron i_serial="7" don_prob="0.922" acc_prob="0.758">
            <gDNA_intron_boundary i_start="22158" i_stop="22271" i_length="114"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="22272" e_stop="22288" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20774" stop="20839"/>
              <exon start="20930" stop="21016"/>
              <exon start="21114" stop="21202"/>
              <exon start="21399" stop="21461"/>
              <exon start="21651" stop="21707"/>
              <exon start="21815" stop="21911"/>
              <exon start="21999" stop="22157"/>
              <exon start="22272" stop="22288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAGATCTGGGCTTGACCGCTATATATGGATTATTGGCATGATATATGCCTATTTTCACCCAAAT : GTTGAGAAGTGGATGGAGAAACTGGAGGAGTCTGAACCAAAGCGGAGACGGACAATTAAGTCAACCATCTGTGCAGTAACTTTAATT : GTTGGGTACTTGTGGTTTGAATACATCTACAAGCTGGACAAGACAGCTTACAACAAACTCCACCCCTACACGTCATGGATTCCTATTAC : TGTATACATATGCTTGCGTAATTTGACTCAGGAGCTGCGGAATTTCTCTCTGACACTCTTTGC : GTGGCTTGGGAAAATTACCTTAGAAACCTACATCTCCCAGTTCCACATCTGGCTGAG : ATCAAATATGCCAAATGGACAGCCTAAATGGCTCCTTTCATTTATCCCGGGCTATCCTATGCTTAATTTCATGCTGACTACAGCAATTTATGTACTG : CTATCATGTAGGCTTTTTGAACTAACCAACACACTCAAATCCGTTTTCGTACCCACAAGAGACAATCAGAAGCTGCTCCACAACTTTATTGCTGGTGTCGCGATTTCTCTGTGTTTATACATCATTTCCTTTATCCTTATTCAAATCCCTCATTAATGA : AACCATTTATCTGGACT</gDNA_template>
            <first_frame> F  R  S  G  L  D  R  Y  I  W  I  I  G  M  I  Y  A  Y  F  H  P  N  :  V  E  K  W  M  E  K  L  E  E  S  E  P  K  R  R  R  T  I  K  S  T  I  C  A  V  T  L  I  :  V  G  Y  L  W  F  E  Y  I  Y  K  L  D  K  T  A  Y  N  K  L  H  P  Y  T  S  W  I  P  I  T :   V  Y  I  C  L  R  N  L  T  Q  E  L  R  N  F  S  L  T  L  F  A :   W  L  G  K  I  T  L  E  T  Y  I  S  Q  F  H  I  W  L  R :   S  N  M  P  N  G  Q  P  K  W  L  L  S  F  I  P  G  Y  P  M  L  N  F  M  L  T  T  A  I  Y  V  L  :  L  S  C  R  L  F  E  L  T  N  T  L  K  S  V  F  V  P  T  R  D  N  Q  K  L  L  H  N  F  I  A  G  V  A  I  S  L  C  L  Y  I  I  S  F  I  L  I  Q  I  P  H  *  *  :  N  H  L  S  G   </first_frame>
            <second_frame>  L  D  L  G  L  T  A  I  Y  G  L  L  A  *  Y  M  P  I  F  T  Q  M :   L  R  S  G  W  R  N  W  R  S  L  N  Q  S  G  D  G  Q  L  S  Q  P  S  V  Q  *  L  *  L :   L  G  T  C  G  L  N  T  S  T  S  W  T  R  Q  L  T  T  N  S  T  P  T  R  H  G  F  L  L   : L  Y  T  Y  A  C  V  I  *  L  R  S  C  G  I  S  L  *  H  S  L   : R  G  L  G  K  L  P  *  K  P  T  S  P  S  S  T  S  G  *   : D  Q  I  C  Q  M  D  S  L  N  G  S  F  H  L  S  R  A  I  L  C  L  I  S  C  *  L  Q  Q  F  M  Y  C :   Y  H  V  G  F  L  N  *  P  T  H  S  N  P  F  S  Y  P  Q  E  T  I  R  S  C  S  T  T  L  L  L  V  S  R  F  L  C  V  Y  T  S  F  P  L  S  L  F  K  S  L  I  N  E :   T  I  Y  L  D  </second_frame>
            <third_frame>   *  I  W  A  *  P  L  Y  M  D  Y  W  H  D  I  C  L  F  S  P  K   : C  *  E  V  D  G  E  T  G  G  V  *  T  K  A  E  T  D  N  *  V  N  H  L  C  S  N  F  N   : C  W  V  L  V  V  *  I  H  L  Q  A  G  Q  D  S  L  Q  Q  T  P  P  L  H  V  M  D  S  Y  Y  :  C  I  H  M  L  A  *  F  D  S  G  A  A  E  F  L  S  D  T  L  C  :  V  A  W  E  N  Y  L  R  N  L  H  L  P  V  P  H  L  A  E  :  I  K  Y  A  K  W  T  A  *  M  A  P  F  I  Y  P  G  L  S  Y  A  *  F  H  A  D  Y  S  N  L  C  T   : A  I  M  *  A  F  *  T  N  Q  H  T  Q  I  R  F  R  T  H  K  R  Q  S  E  A  A  P  Q  L  Y  C  W  C  R  D  F  S  V  F  I  H  H  F  L  Y  P  Y  S  N  P  S  L  M   : K  P  F  I  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20774" stop="20839"/>
                    <exon start="20930" stop="21016"/>
                    <exon start="21114" stop="21202"/>
                    <exon start="21399" stop="21461"/>
                    <exon start="21651" stop="21707"/>
                    <exon start="21815" stop="21911"/>
                    <exon start="21999" stop="22154"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRSGLDRYIWIIGMIYAYFHPNVEKWMEKLEESEPKRRRTIKSTICAVTLIVGYLWFEYIYKLDKTAYNKLHPYTSWIPITVYICLRNLTQELRNFSLTLFAWLGKITLETYISQFHIWLRSNMPNGQPKWLLSFIPGYPMLNFMLTTAIYVLLSCRLFELTNTLKSVFVPTRDNQKLLHNFIAGVAISLCLYIISFILIQIPH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="26503" PGL_stop="30388"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26503" e_stop="26648"/>
            <exon e_start="29835" e_stop="30388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.993"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="26503" e_stop="26648" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26649" i_stop="29834" i_length="3186"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="29835" e_stop="30388" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26503" stop="26648"/>
              <exon start="29835" stop="30388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCAAAGTACTCTTAAAAGCCTTTCTCACTCATTCTTCTCACTCTACATATCAACATATATTGTATGTTTCTTTCCCAATTTTGGGGAAAACAAAAAAAGATAACTCTATGGAAGAAGTTCAACAAAAGCTCTTGGATATCCCAA : ATGAAGAAATATGTGAGGATGAAAATTCCAACATTGAATCAAGTGGATCAACTAATTGTTGTTCCTACTTTGCCAAGCATAAATGGTGGTACCAAGTTGCCATTTTTACCGTTTTTACTATAATTGGAGAAGTAGTAACATCACTATTGGTTAAAACATATTTTACCAAAGGTGGTAAAAGTATATGGTTAGTCTCCTTAGTGCAAAATGCAGGGTTCCCAATTCTTCTTCCTTTCCTATACACTGTGTCACTCAAAAATCATAGCCAAATTGAGGTGATCAAAGGAAATCAAGAACCCCATATTTGCATAATCTTTTTAGTTTATGCTGTTCTAGGTGTGTTACTTGGTGGGGTTAGTGTTTTCAACTCGATCGGTCTAAAGTACCTTCAAGTATCAACACATTCTCTCACTAGTACCACTCGACTAGGGTTTAGTATTATCTTCTCTTTATTCCACAATGCACATAAGTTCACCCCAGTTATAGTAAACTCTCTAGTTCTTGTAACAGCTGCTTCAGTCATTCTTGTGGTTCATAATAACGAGTCTGGGGAA</gDNA_template>
            <first_frame> S  Q  S  T  L  K  S  L  S  H  S  F  F  S  L  Y  I  S  T  Y  I  V  C  F  F  P  N  F  G  E  N  K  K  R  *  L  Y  G  R  S  S  T  K  A  L  G  Y  P  K :   *  R  N  M  *  G  *  K  F  Q  H  *  I  K  W  I  N  *  L  L  F  L  L  C  Q  A  *  M  V  V  P  S  C  H  F  Y  R  F  Y  Y  N  W  R  S  S  N  I  T  I  G  *  N  I  F  Y  Q  R  W  *  K  Y  M  V  S  L  L  S  A  K  C  R  V  P  N  S  S  S  F  P  I  H  C  V  T  Q  K  S  *  P  N  *  G  D  Q  R  K  S  R  T  P  Y  L  H  N  L  F  S  L  C  C  S  R  C  V  T  W  W  G  *  C  F  Q  L  D  R  S  K  V  P  S  S  I  N  T  F  S  H  *  Y  H  S  T  R  V  *  Y  Y  L  L  F  I  P  Q  C  T  *  V  H  P  S  Y  S  K  L  S  S  S  C  N  S  C  F  S  H  S  C  G  S  *  *  R  V  W  G  </first_frame>
            <second_frame>  L  K  V  L  L  K  A  F  L  T  H  S  S  H  S  T  Y  Q  H  I  L  Y  V  S  F  P  I  L  G  K  T  K  K  D  N  S  M  E  E  V  Q  Q  K  L  L  D  I  P   : N  E  E  I  C  E  D  E  N  S  N  I  E  S  S  G  S  T  N  C  C  S  Y  F  A  K  H  K  W  W  Y  Q  V  A  I  F  T  V  F  T  I  I  G  E  V  V  T  S  L  L  V  K  T  Y  F  T  K  G  G  K  S  I  W  L  V  S  L  V  Q  N  A  G  F  P  I  L  L  P  F  L  Y  T  V  S  L  K  N  H  S  Q  I  E  V  I  K  G  N  Q  E  P  H  I  C  I  I  F  L  V  Y  A  V  L  G  V  L  L  G  G  V  S  V  F  N  S  I  G  L  K  Y  L  Q  V  S  T  H  S  L  T  S  T  T  R  L  G  F  S  I  I  F  S  L  F  H  N  A  H  K  F  T  P  V  I  V  N  S  L  V  L  V  T  A  A  S  V  I  L  V  V  H  N  N  E  S  G  E </second_frame>
            <third_frame>   S  K  Y  S  *  K  P  F  S  L  I  L  L  T  L  H  I  N  I  Y  C  M  F  L  S  Q  F  W  G  K  Q  K  K  I  T  L  W  K  K  F  N  K  S  S  W  I  S  Q  :  M  K  K  Y  V  R  M  K  I  P  T  L  N  Q  V  D  Q  L  I  V  V  P  T  L  P  S  I  N  G  G  T  K  L  P  F  L  P  F  L  L  *  L  E  K  *  *  H  H  Y  W  L  K  H  I  L  P  K  V  V  K  V  Y  G  *  S  P  *  C  K  M  Q  G  S  Q  F  F  F  L  S  Y  T  L  C  H  S  K  I  I  A  K  L  R  *  S  K  E  I  K  N  P  I  F  A  *  S  F  *  F  M  L  F  *  V  C  Y  L  V  G  L  V  F  S  T  R  S  V  *  S  T  F  K  Y  Q  H  I  L  S  L  V  P  L  D  *  G  L  V  L  S  S  L  Y  S  T  M  H  I  S  S  P  Q  L  *  *  T  L  *  F  L  *  Q  L  L  Q  S  F  L  W  F  I  I  T  S  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26504" stop="26648"/>
                    <exon start="29835" stop="30388"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKVLLKAFLTHSSHSTYQHILYVSFPILGKTKKDNSMEEVQQKLLDIPNEEICEDENSNIESSGSTNCCSYFAKHKWWYQVAIFTVFTIIGEVVTSLLVKTYFTKGGKSIWLVSLVQNAGFPILLPFLYTVSLKNHSQIEVIKGNQEPHICIIFLVYAVLGVLLGGVSVFNSIGLKYLQVSTHSLTSTTRLGFSIIFSLFHNAHKFTPVIVNSLVLVTAASVILVVHNNESGE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="31092" PGL_stop="30988"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31092" e_stop="30988"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="31092" e_stop="30988" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31092" stop="30988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCAATATATATATATATATATATATATAGTTGATCACATTTATATGTACACTTCTTTAAAAGTTGACAAAAATAAAACATAAAATTTACAATAGAATAAGAGT</gDNA_template>
            <first_frame> K  Q  Y  I  Y  I  Y  I  Y  I  V  D  H  I  Y  M  Y  T  S  L  K  V  D  K  N  K  T  *  N  L  Q  *  N  K  S </first_frame>
            <second_frame>  S  N  I  Y  I  Y  I  Y  I  *  L  I  T  F  I  C  T  L  L  *  K  L  T  K  I  K  H  K  I  Y  N  R  I  R   </second_frame>
            <third_frame>   A  I  Y  I  Y  I  Y  I  Y  S  *  S  H  L  Y  V  H  F  F  K  S  *  Q  K  *  N  I  K  F  T  I  E  *  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0103M17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="37619" PGL_stop="33903"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37619" e_stop="37503"/>
            <exon e_start="36363" e_stop="36164"/>
            <exon e_start="36076" e_stop="35942"/>
            <exon e_start="34950" e_stop="34786"/>
            <exon e_start="34659" e_stop="34600"/>
            <exon e_start="34019" e_stop="33903"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.719" e_score="1.000"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37619" e_stop="37503" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.982">
            <gDNA_intron_boundary i_start="37502" i_stop="36364" i_length="1139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36363" e_stop="36164" e_length="200"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.990">
            <gDNA_intron_boundary i_start="36163" i_stop="36077" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36076" e_stop="35942" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.990">
            <gDNA_intron_boundary i_start="35941" i_stop="34951" i_length="991"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34950" e_stop="34786" e_length="165"/>
          </exon>
          <intron i_serial="4" don_prob="0.892" acc_prob="0.950">
            <gDNA_intron_boundary i_start="34785" i_stop="34660" i_length="126"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34659" e_stop="34600" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.719">
            <gDNA_intron_boundary i_start="34599" i_stop="34020" i_length="580"/>
          </intron>
          <exon e_serial="6" e_score="0.923">
            <gDNA_exon_boundary e_start="34019" e_stop="33903" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37619" stop="37503"/>
              <exon start="36363" stop="36164"/>
              <exon start="36076" stop="35942"/>
              <exon start="34950" stop="34786"/>
              <exon start="34659" stop="34600"/>
              <exon start="34019" stop="33903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573413" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTCATTTAACCTGAATTTTTCACTACAGATTTCGCAGATGCAAATTTGAAATTCCGATGGATTTTGCGCTGAATTCCGATTGATTTTTTCGTCGGCCGATTTCAATAGACAGCAG : CTGAGGTGCAGAGCTTCTTGTAATGGAGAAGGGGGATTTTTGCATCTCCACTATGGCATCATCAAATATCGCAGTTCTATTAGCTATTGGTGTCATCACTTTACTTGTGATACGAATTATTTATGTTATTAATAGGAGAAGAAAGCCGCTTCACTCCAAATCACCACGATCCCTCAGTACACTTATTGTTCTGGGTTCAG : GTGGTCACACAGCAGAAATGTTAAACTTATTATATGTCCTCCAAACAGAGAGGTTTAAGCCGAGGTATTATATTGCTGCTGCTACTGATAATATGAGTCTCCAAAAAGCACACGTGTTTGAGGATTCCTTGCTCG : GACTACCTCTTATTCTAGGAAGCGCCTGAGGAAGTAGGGGGAGCTGAATTCATGCAGATATATCGAAGTCGAGAGGTTGGTCAATCGTATATAACCTCAGTTGGAACCACATTGGTTGCAATTGCACATGCGTTATGGTTAATGATCAAGACCAGACCCCAAGTG : ATTCTGTGCAATGGCCCTGGAACGTGTATTCCACTATGTGTAATTGCTTTCCTTTTCAAG : GTTTTGGGAATTAGGTGGTCATCAATTTTCTATGTCGAGAGCATTGCAAGAGTCAGGAAGCTGTCTTTAAGCGGTTTACTTCTTTACAAGCTACACATGGCAGATCAGTTATTCGTG</gDNA_template>
            <first_frame> T  S  F  N  L  N  F  S  L  Q  I  S  Q  M  Q  I  *  N  S  D  G  F  C  A  E  F  R  L  I  F  S  S  A  D  F  N  R  Q  Q  :  L  R  C  R  A  S  C  N  G  E  G  G  F  L  H  L  H  Y  G  I  I  K  Y  R  S  S  I  S  Y  W  C  H  H  F  T  C  D  T  N  Y  L  C  Y  *  *  E  K  K  A  A  S  L  Q  I  T  T  I  P  Q  Y  T  Y  C  S  G  F  R :   W  S  H  S  R  N  V  K  L  I  I  C  P  P  N  R  E  V  *  A  E  V  L  Y  C  C  C  Y  *  *  Y  E  S  P  K  S  T  R  V  *  G  F  L  A  R :   T  T  S  Y  S  R  K  R  L  R  K  *  G  E  L  N  S  C  R  Y  I  E  V  E  R  L  V  N  R  I  *  P  Q  L  E  P  H  W  L  Q  L  H  M  R  Y  G  *  *  S  R  P  D  P  K  * :   F  C  A  M  A  L  E  R  V  F  H  Y  V  *  L  L  S  F  S  R :   F  W  E  L  G  G  H  Q  F  S  M  S  R  A  L  Q  E  S  G  S  C  L  *  A  V  Y  F  F  T  S  Y  T  W  Q  I  S  Y  S   </first_frame>
            <second_frame>  L  H  L  T  *  I  F  H  Y  R  F  R  R  C  K  F  E  I  P  M  D  F  A  L  N  S  D  *  F  F  R  R  P  I  S  I  D  S  S :   *  G  A  E  L  L  V  M  E  K  G  D  F  C  I  S  T  M  A  S  S  N  I  A  V  L  L  A  I  G  V  I  T  L  L  V  I  R  I  I  Y  V  I  N  R  R  R  K  P  L  H  S  K  S  P  R  S  L  S  T  L  I  V  L  G  S   : G  G  H  T  A  E  M  L  N  L  L  Y  V  L  Q  T  E  R  F  K  P  R  Y  Y  I  A  A  A  T  D  N  M  S  L  Q  K  A  H  V  F  E  D  S  L  L   : G  L  P  L  I  L  G  S  A  *  G  S  R  G  S  *  I  H  A  D  I  S  K  S  R  G  W  S  I  V  Y  N  L  S  W  N  H  I  G  C  N  C  T  C  V  M  V  N  D  Q  D  Q  T  P  S   : D  S  V  Q  W  P  W  N  V  Y  S  T  M  C  N  C  F  P  F  Q   : G  F  G  N  *  V  V  I  N  F  L  C  R  E  H  C  K  S  Q  E  A  V  F  K  R  F  T  S  L  Q  A  T  H  G  R  S  V  I  R  </second_frame>
            <third_frame>   F  I  *  P  E  F  F  T  T  D  F  A  D  A  N  L  K  F  R  W  I  L  R  *  I  P  I  D  F  F  V  G  R  F  Q  *  T  A   : A  E  V  Q  S  F  L  *  W  R  R  G  I  F  A  S  P  L  W  H  H  Q  I  S  Q  F  Y  *  L  L  V  S  S  L  Y  L  *  Y  E  L  F  M  L  L  I  G  E  E  S  R  F  T  P  N  H  H  D  P  S  V  H  L  L  F  W  V  Q  :  V  V  T  Q  Q  K  C  *  T  Y  Y  M  S  S  K  Q  R  G  L  S  R  G  I  I  L  L  L  L  L  I  I  *  V  S  K  K  H  T  C  L  R  I  P  C  S  :  D  Y  L  L  F  *  E  A  P  E  E  V  G  G  A  E  F  M  Q  I  Y  R  S  R  E  V  G  Q  S  Y  I  T  S  V  G  T  T  L  V  A  I  A  H  A  L  W  L  M  I  K  T  R  P  Q  V  :  I  L  C  N  G  P  G  T  C  I  P  L  C  V  I  A  F  L  F  K  :  V  L  G  I  R  W  S  S  I  F  Y  V  E  S  I  A  R  V  R  K  L  S  L  S  G  L  L  L  Y  K  L  H  M  A  D  Q  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36359" stop="36164"/>
                    <exon start="36076" stop="35942"/>
                    <exon start="34950" stop="34922"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GAELLVMEKGDFCISTMASSNIAVLLAIGVITLLVIRIIYVINRRRKPLHSKSPRSLSTLIVLGSGGHTAEMLNLLYVLQTERFKPRYYIAAATDNMSLQKAHVFEDSLLGLPLILGSA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34932" stop="34786"/>
                    <exon start="34659" stop="34600"/>
                    <exon start="34019" stop="33903"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAPEEVGGAEFMQIYRSREVGQSYITSVGTTLVAIAHALWLMIKTRPQVILCNGPGTCIPLCVIAFLFKVLGIRWSSIFYVESIARVRKLSLSGLLLYKLHMADQLFV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="39684" PGL_stop="39231"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39684" e_stop="39231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39684" e_stop="39231" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39684" stop="39231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTAGACACCTCAATCATCCTCACTATATCGTAGAGATCCAAAGTCGTGACACCTAAATATTCAATACCAATAGATCTGTTCTTATAACCTATCTAATCAATGTTTCCCCACAGATGTTCAGTGTGTGTCGAATCCTCTTTTTGAAGAGTCCGAGCACATAGTACACCCTAAGGTAAGAACAACAGAGCAGGACCACAACCACTGATTTGTGGGATCATTCACTAAAATTTGGGTAAGGACGAAAAGTAAAAGTTGTATCTTGCAATGGAGCAGCTTACTCCTGACATGGATCATGGAATTGAATTTATACAAAAAAATGATTTTTCAAGTTTCTTAATCGAAATAAACTATCACTAACTATTTATCGAAACACAACTCATCTATTAATTGTTCAGAAACTCTTTTTAGATTTTGCCCTAATGTTTGATTAATTTTTACGAATTAGGGCGATAT</gDNA_template>
            <first_frame> S  R  H  L  N  H  P  H  Y  I  V  E  I  Q  S  R  D  T  *  I  F  N  T  N  R  S  V  L  I  T  Y  L  I  N  V  S  P  Q  M  F  S  V  C  R  I  L  F  L  K  S  P  S  T  *  Y  T  L  R  *  E  Q  Q  S  R  T  T  T  T  D  L  W  D  H  S  L  K  F  G  *  G  R  K  V  K  V  V  S  C  N  G  A  A  Y  S  *  H  G  S  W  N  *  I  Y  T  K  K  *  F  F  K  F  L  N  R  N  K  L  S  L  T  I  Y  R  N  T  T  H  L  L  I  V  Q  K  L  F  L  D  F  A  L  M  F  D  *  F  L  R  I  R  A  I  </first_frame>
            <second_frame>  L  D  T  S  I  I  L  T  I  S  *  R  S  K  V  V  T  P  K  Y  S  I  P  I  D  L  F  L  *  P  I  *  S  M  F  P  H  R  C  S  V  C  V  E  S  S  F  *  R  V  R  A  H  S  T  P  *  G  K  N  N  R  A  G  P  Q  P  L  I  C  G  I  I  H  *  N  L  G  K  D  E  K  *  K  L  Y  L  A  M  E  Q  L  T  P  D  M  D  H  G  I  E  F  I  Q  K  N  D  F  S  S  F  L  I  E  I  N  Y  H  *  L  F  I  E  T  Q  L  I  Y  *  L  F  R  N  S  F  *  I  L  P  *  C  L  I  N  F  Y  E  L  G  R  Y </second_frame>
            <third_frame>   *  T  P  Q  S  S  S  L  Y  R  R  D  P  K  S  *  H  L  N  I  Q  Y  Q  *  I  C  S  Y  N  L  S  N  Q  C  F  P  T  D  V  Q  C  V  S  N  P  L  F  E  E  S  E  H  I  V  H  P  K  V  R  T  T  E  Q  D  H  N  H  *  F  V  G  S  F  T  K  I  W  V  R  T  K  S  K  S  C  I  L  Q  W  S  S  L  L  L  T  W  I  M  E  L  N  L  Y  K  K  M  I  F  Q  V  S  *  S  K  *  T  I  T  N  Y  L  S  K  H  N  S  S  I  N  C  S  E  T  L  F  R  F  C  P  N  V  *  L  I  F  T  N  *  G  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0103M17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="41448" PGL_stop="40599"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41448" e_stop="40599"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="41448" e_stop="40599" e_length="850"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41448" stop="40599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41437" stop="40886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAACTTTTCTTTTTGTACATTCAAGAGTTTCTCATTCTACTTCTATAATGGCTACTTCTACCATGGCTCTTTCTTCCTCTACATTTGCCGGAAAGGCGGTTAAACTCTCCCCATCTTCTTCTGAAATCACCGGAAATGGGAGAGTCACCATGAGGAAAACTGCTACCAAGGCCAAGCCAGCCTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGGGAATCCCCAAGCTACTTGACCGGTGAGTTTCCTGGTGATTACGGATGGGACACTGCTGGACTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGTAGATGGGCCATGCTTGGTGCTCTTGGATGTGTATTCCCCGAGCTTTTGGCCCGTAATGGTGTTAAGTTCGGTGAAGCTGTATGGTTCAAGGCTGGATCACAAATTTTCAGCGAGGGTGGACTTGACTACTTGGGAAACCCAAGCTTGGTCCATGCACAAAGCATTTTGGCTATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGACCCACTCTACCCTGGTGGTAGCTTTGACCCACTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGCTCAAGGTAAAAGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTCGGATTCTTTGTTCAAGCTATCGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCATCTCGCTGATCCAGTCAATAACAATGCTTGGGCCTTCGCCACAAACTTTGTCCCCGGAAA</gDNA_template>
            <first_frame> K  Q  L  F  F  L  Y  I  Q  E  F  L  I  L  L  L  *  W  L  L  L  P  W  L  F  L  P  L  H  L  P  E  R  R  L  N  S  P  H  L  L  L  K  S  P  E  M  G  E  S  P  *  G  K  L  L  P  R  P  S  Q  P  P  L  V  A  H  G  M  V  L  T  V  L  S  T  W  D  H  S  L  G  N  P  Q  A  T  *  P  V  S  F  L  V  I  T  D  G  T  L  L  D  F  Q  L  T  L  K  H  S  L  R  T  V  S  W  R  L  F  I  V  D  G  P  C  L  V  L  L  D  V  Y  S  P  S  F  W  P  V  M  V  L  S  S  V  K  L  Y  G  S  R  L  D  H  K  F  S  A  R  V  D  L  T  T  W  E  T  Q  A  W  S  M  H  K  A  F  W  L  S  G  L  A  K  L  C  *  W  E  P  L  R  V  T  V  L  L  V  G  L  L  V  R  L  L  T  H  S  T  L  V  V  A  L  T  H  W  A  L  L  M  T  Q  R  L  L  L  S  S  R  *  K  R  S  R  M  V  D  L  L  C  S  P  C  S  D  S  L  F  K  L  S  S  P  E  R  V  H  W  R  T  L  L  T  I  S  L  I  Q  S  I  T  M  L  G  P  S  P  Q  T  L  S  P  E  </first_frame>
            <second_frame>  N  N  F  S  F  C  T  F  K  S  F  S  F  Y  F  Y  N  G  Y  F  Y  H  G  S  F  F  L  Y  I  C  R  K  G  G  *  T  L  P  I  F  F  *  N  H  R  K  W  E  S  H  H  E  E  N  C  Y  Q  G  Q  A  S  L  L  W  *  P  M  V  W  S  *  P  C  *  V  L  G  T  I  L  W  G  I  P  K  L  L  D  R  *  V  S  W  *  L  R  M  G  H  C  W  T  F  S  *  P  *  N  I  R  *  E  P  *  V  G  G  Y  S  L  *  M  G  H  A  W  C  S  W  M  C  I  P  R  A  F  G  P  *  W  C  *  V  R  *  S  C  M  V  Q  G  W  I  T  N  F  Q  R  G  W  T  *  L  L  G  K  P  K  L  G  P  C  T  K  H  F  G  Y  L  G  L  P  S  C  V  D  G  S  R  *  G  L  P  Y  C  W  W  A  S  W  *  G  C  *  P  T  L  P  W  W  *  L  *  P  T  G  P  C  *  *  P  R  G  F  C  *  A  Q  G  K  R  D  Q  E  W  *  T  C  Y  V  L  H  V  R  I  L  C  S  S  Y  R  H  R  K  G  S  I  G  E  P  C  *  P  S  R  *  S  S  Q  *  Q  C  L  G  L  R  H  K  L  C  P  R  K </second_frame>
            <third_frame>   T  T  F  L  F  V  H  S  R  V  S  H  S  T  S  I  M  A  T  S  T  M  A  L  S  S  S  T  F  A  G  K  A  V  K  L  S  P  S  S  S  E  I  T  G  N  G  R  V  T  M  R  K  T  A  T  K  A  K  P  A  S  S  G  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  D  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  L  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41446" stop="40601"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTFLFVHSRVSHSTSIMATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="43477" PGL_stop="42397"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43477" e_stop="42397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="43477" e_stop="42397" e_length="1081"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43477" stop="42397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43444" stop="43073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43043" stop="42662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCATCTCTTCTTTTTTTGTACATTCTAAGAGTTCATAATGGCTGCTTCTACTATGGCTCTTTCCTCCTCTACTTTCGCCGGTAAGGCGGTGAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCTGCCTCCTCTGGTAGCCCATGGTACGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAAGTGAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACTGGAAAGGGTCCATTGGAGAATCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCCTTTGCCACAAACTTTGTTCCCGGAAAGTGAAGTTTTTGAGAGAAAAAAATGTTACGTCTAGTATCTTATTGTTTGATGACAATCATGTAAACCTAGCAATTGTAAATTACTAGAGATTATATATGAAGTTTTTTGCTAAAACCTAGTGTTTGTTGATTAAATCTAAATCATTAATATTAATATATAGTAACAAGTGGAAAAATGGGAAAAGAGAAAATGAAAGATTAATTTCTTTATGTCATTTATAATGACTTAACAGTTAAATAAT</gDNA_template>
            <first_frame> N  H  L  F  F  F  C  T  F  *  E  F  I  M  A  A  S  T  M  A  L  S  S  S  T  F  A  G  K  A  V  K  L  S  P  S  S  S  E  I  S  G  N  G  R  I  T  M  R  K  T  A  A  K  P  K  P  A  S  S  G  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  I  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  S  F  *  E  K  K  M  L  R  L  V  S  Y  C  L  M  T  I  M  *  T  *  Q  L  *  I  T  R  D  Y  I  *  S  F  L  L  K  P  S  V  C  *  L  N  L  N  H  *  Y  *  Y  I  V  T  S  G  K  M  G  K  E  K  M  K  D  *  F  L  Y  V  I  Y  N  D  L  T  V  K  *  </first_frame>
            <second_frame>  I  I  S  S  F  F  V  H  S  K  S  S  *  W  L  L  L  L  W  L  F  P  P  L  L  S  P  V  R  R  *  N  S  H  H  L  L  L  K  S  V  E  M  G  E  L  Q  *  G  R  L  L  P  S  P  S  L  P  P  L  V  A  H  G  T  V  L  T  V  L  S  T  W  A  H  S  L  V  N  H  Q  A  I  *  L  V  S  S  L  V  I  T  D  G  T  L  L  G  F  Q  L  T  L  K  H  S  L  R  T  V  S  W  R  L  F  I  A  D  G  P  C  L  V  L  L  D  V  F  S  P  S  F  W  H  V  T  V  L  S  L  V  K  L  Y  G  S  K  L  D  L  K  F  S  A  R  A  D  L  T  T  W  E  T  L  V  W  F  M  H  K  A  F  W  L  F  G  L  A  K  L  C  *  W  E  P  L  R  V  T  V  L  L  V  G  L  L  V  R  L  L  I  H  F  T  L  V  V  A  L  T  H  W  A  L  L  K  T  Q  R  L  L  L  S  S  K  *  R  R  S  R  T  A  D  L  L  C  S  P  C  L  D  S  L  F  K  L  L  S  L  E  R  V  H  W  R  I  L  P  T  T  L  L  T  Q  L  T  T  T  P  G  P  L  P  Q  T  L  F  P  E  S  E  V  F  E  R  K  K  C  Y  V  *  Y  L  I  V  *  *  Q  S  C  K  P  S  N  C  K  L  L  E  I  I  Y  E  V  F  C  *  N  L  V  F  V  D  *  I  *  I  I  N  I  N  I  *  *  Q  V  E  K  W  E  K  R  K  *  K  I  N  F  F  M  S  F  I  M  T  *  Q  L  N  N </second_frame>
            <third_frame>   S  S  L  L  F  L  Y  I  L  R  V  H  N  G  C  F  Y  Y  G  S  F  L  L  Y  F  R  R  *  G  G  E  T  L  T  I  F  F  *  N  Q  W  K  W  E  N  Y  N  E  E  D  C  C  Q  A  Q  A  C  L  L  W  *  P  M  V  R  S  *  P  C  *  V  L  G  P  I  L  W  *  I  T  K  L  F  D  W  *  V  P  W  *  L  R  M  G  H  C  W  A  F  S  *  P  *  N  I  R  *  E  P  *  V  G  G  Y  S  L  Q  M  G  H  A  W  C  S  W  M  C  F  P  R  A  F  G  T  *  R  C  *  V  W  *  S  C  M  V  Q  S  W  I  S  N  F  Q  R  G  R  T  *  L  L  G  K  P  *  F  G  S  C  T  K  H  F  G  Y  L  G  L  P  S  C  V  D  G  S  R  *  G  L  P  Y  C  W  W  A  S  W  *  G  C  *  S  T  L  P  W  W  *  L  *  P  I  G  P  C  *  R  P  R  G  F  C  *  A  Q  S  E  G  D  Q  E  R  Q  T  C  Y  V  L  H  V  W  I  L  C  S  S  Y  C  H  W  K  G  S  I  G  E  S  C  R  P  H  C  *  P  S  *  Q  Q  R  L  G  L  C  H  K  L  C  S  R  K  V  K  F  L  R  E  K  N  V  T  S  S  I  L  L  F  D  D  N  H  V  N  L  A  I  V  N  Y  *  R  L  Y  M  K  F  F  A  K  T  *  C  L  L  I  K  S  K  S  L  I  L  I  Y  S  N  K  W  K  N  G  K  R  E  N  E  R  L  I  S  L  C  H  L  *  *  L  N  S  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43447" stop="42635"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFIMAASTMALSSSTFAGKAVKLSPSSSEISGNGRITMRKTAAKPKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43438" e_stop="43297"/>
            <exon e_start="43209" e_stop="42662"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.951"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="43438" e_stop="43297" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43296" i_stop="43210" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="43209" e_stop="42662" e_length="548"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43438" stop="43297"/>
              <exon start="43209" stop="42772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43043" stop="42662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGCTGCTTCTACTATGGCTCTTTCCTCCTCTACTTTCGCCGGTAAGGCGGTGAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCTGCCTCCTCTG : GTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAAGTGAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACTGGAAAGGGTCCATTGGAGAATCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCCTTT</gDNA_template>
            <first_frame> M  A  A  S  T  M  A  L  S  S  S  T  F  A  G  K  A  V  K  L  S  P  S  S  S  E  I  S  G  N  G  R  I  T  M  R  K  T  A  A  K  P  K  P  A  S  S   : G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  I  A  D  P  V  N  N  N  A  W  A  F </first_frame>
            <second_frame>  W  L  L  L  L  W  L  F  P  P  L  L  S  P  V  R  R  *  N  S  H  H  L  L  L  K  S  V  E  M  G  E  L  Q  *  G  R  L  L  P  S  P  S  L  P  P  L  :  V  I  T  D  G  T  L  L  G  F  Q  L  T  L  K  H  S  L  R  T  V  S  W  R  L  F  I  A  D  G  P  C  L  V  L  L  D  V  F  S  P  S  F  W  H  V  T  V  L  S  L  V  K  L  Y  G  S  K  L  D  L  K  F  S  A  R  A  D  L  T  T  W  E  T  L  V  W  F  M  H  K  A  F  W  L  F  G  L  A  K  L  C  *  W  E  P  L  R  V  T  V  L  L  V  G  L  L  V  R  L  L  I  H  F  T  L  V  V  A  L  T  H  W  A  L  L  K  T  Q  R  L  L  L  S  S  K  *  R  R  S  R  T  A  D  L  L  C  S  P  C  L  D  S  L  F  K  L  L  S  L  E  R  V  H  W  R  I  L  P  T  T  L  L  T  Q  L  T  T  T  P  G  P   </second_frame>
            <third_frame>   G  C  F  Y  Y  G  S  F  L  L  Y  F  R  R  *  G  G  E  T  L  T  I  F  F  *  N  Q  W  K  W  E  N  Y  N  E  E  D  C  C  Q  A  Q  A  C  L  L  W :   *  L  R  M  G  H  C  W  A  F  S  *  P  *  N  I  R  *  E  P  *  V  G  G  Y  S  L  Q  M  G  H  A  W  C  S  W  M  C  F  P  R  A  F  G  T  *  R  C  *  V  W  *  S  C  M  V  Q  S  W  I  S  N  F  Q  R  G  R  T  *  L  L  G  K  P  *  F  G  S  C  T  K  H  F  G  Y  L  G  L  P  S  C  V  D  G  S  R  *  G  L  P  Y  C  W  W  A  S  W  *  G  C  *  S  T  L  P  W  W  *  L  *  P  I  G  P  C  *  R  P  R  G  F  C  *  A  Q  S  E  G  D  Q  E  R  Q  T  C  Y  V  L  H  V  W  I  L  C  S  S  Y  C  H  W  K  G  S  I  G  E  S  C  R  P  H  C  *  P  S  *  Q  Q  R  L  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43438" stop="43297"/>
                    <exon start="43209" stop="42662"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAASTMALSSSTFAGKAVKLSPSSSEISGNGRITMRKTAAKPKPASSGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="43452" e_stop="42901"/>
            <exon e_start="42831" e_stop="42731"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="43452" e_stop="42901" e_length="552"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42900" i_stop="42832" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="42831" e_stop="42731" e_length="101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43452" stop="42901"/>
              <exon start="42831" stop="42731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43444" stop="43073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592371" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTAAGAGTTCATAATGGCTGCTTCTACTATGGCTCTTTCCTCCTCTACTTTCGCCGGTAAGGCGGTGAAACTCTCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCTGCCTCCTCTGGTAGCCCATGGTACGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTG : AAGACCCAGAGGCTTTTGCTGAGCTCAAAGTGAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACT</gDNA_template>
            <first_frame> S  K  S  S  *  W  L  L  L  L  W  L  F  P  P  L  L  S  P  V  R  R  *  N  S  H  H  L  L  L  K  S  V  E  M  G  E  L  Q  *  G  R  L  L  P  S  P  S  L  P  P  L  V  A  H  G  T  V  L  T  V  L  S  T  W  A  H  S  L  V  N  H  Q  A  I  *  L  V  S  S  L  V  I  T  D  G  T  L  L  G  F  Q  L  T  L  K  H  S  L  R  T  V  S  W  R  L  F  I  A  D  G  P  C  L  V  L  L  D  V  F  S  P  S  F  W  H  V  T  V  L  S  L  V  K  L  Y  G  S  K  L  D  L  K  F  S  A  R  A  D  L  T  T  W  E  T  L  V  W  F  M  H  K  A  F  W  L  F  G  L  A  K  L  C  *  W  E  P  L  R  V  T  V  L  L  :  K  T  Q  R  L  L  L  S  S  K  *  R  R  S  R  T  A  D  L  L  C  S  P  C  L  D  S  L  F  K  L  L  S   </first_frame>
            <second_frame>  L  R  V  H  N  G  C  F  Y  Y  G  S  F  L  L  Y  F  R  R  *  G  G  E  T  L  T  I  F  F  *  N  Q  W  K  W  E  N  Y  N  E  E  D  C  C  Q  A  Q  A  C  L  L  W  *  P  M  V  R  S  *  P  C  *  V  L  G  P  I  L  W  *  I  T  K  L  F  D  W  *  V  P  W  *  L  R  M  G  H  C  W  A  F  S  *  P  *  N  I  R  *  E  P  *  V  G  G  Y  S  L  Q  M  G  H  A  W  C  S  W  M  C  F  P  R  A  F  G  T  *  R  C  *  V  W  *  S  C  M  V  Q  S  W  I  S  N  F  Q  R  G  R  T  *  L  L  G  K  P  *  F  G  S  C  T  K  H  F  G  Y  L  G  L  P  S  C  V  D  G  S  R  *  G  L  P  Y  C  * :   R  P  R  G  F  C  *  A  Q  S  E  G  D  Q  E  R  Q  T  C  Y  V  L  H  V  W  I  L  C  S  S  Y  C  H  </second_frame>
            <third_frame>   *  E  F  I  M  A  A  S  T  M  A  L  S  S  S  T  F  A  G  K  A  V  K  L  S  P  S  S  S  E  I  S  G  N  G  R  I  T  M  R  K  T  A  A  K  P  K  P  A  S  S  G  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A   : E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43447" stop="42901"/>
                    <exon start="42831" stop="42731"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFIMAASTMALSSSTFAGKAVKLSPSSSEISGNGRITMRKTAAKPKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="42718" PGL_stop="43454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42718" e_stop="43236"/>
            <exon e_start="43313" e_stop="43454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.985"/>
          <exon-only e_score="0.887"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="42718" e_stop="43236" e_length="519"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43237" i_stop="43312" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.887">
            <gDNA_exon_boundary e_start="43313" e_stop="43454" e_length="142"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42718" stop="43236"/>
              <exon start="43313" stop="43454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590177" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGACCCTTTCCAGTGACAATAGCTTGAACAAAGAATCCAAACATGGAGAACATAGCAAGTCTGCCGTTCTTGATCTCCTTCACTTTGAGCTCAGCAAAAGCCTCTGGGTCTTCAGCAAGGCCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGATCAACAACCTCACCAAGAGGCCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGGTTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTG : GGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGAGAGTTTCACCGCCTTACCGGCGAAAGTAGAGGAGGAAAGAGCCATAGTAGAAGCAGCCATTATGAACTCTTAGAAT</gDNA_template>
            <first_frame> M  D  P  F  Q  *  Q  *  L  E  Q  R  I  Q  T  W  R  T  *  Q  V  C  R  S  *  S  P  S  L  *  A  Q  Q  K  P  L  G  L  Q  Q  G  P  M  G  Q  S  Y  H  Q  G  K  V  D  Q  Q  P  H  Q  E  A  H  Q  Q  Y  G  N  P  Q  R  L  P  S  T  Q  L  G  K  P  K  *  P  K  C  F  V  H  E  P  N  *  G  F  P  S  S  Q  V  R  P  R  *  K  F  E  I  Q  L  *  T  I  Q  L  H  Q  T  *  H  R  Y  V  P  K  A  R  G  K  H  I  Q  E  H  Q  A  W  P  I  C  N  E  *  P  P  T  H  G  S  *  R  M  F  Q  G  Q  L  K  A  Q  Q  C  P  I  R  N  H  Q  G  T  H  Q  S  N  S  L  :  G  L  G  S  S  L  P  H  C  N  S  P  I  S  T  D  F  R  R  R  W  *  E  F  H  R  L  T  G  E  S  R  G  G  K  S  H  S  R  S  S  H  Y  E  L  L  E  </first_frame>
            <second_frame>  W  T  L  S  S  D  N  S  L  N  K  E  S  K  H  G  E  H  S  K  S  A  V  L  D  L  L  H  F  E  L  S  K  S  L  W  V  F  S  K  A  Q  W  V  K  A  T  T  R  V  K  W  I  N  N  L  T  K  R  P  T  S  N  T  V  T  L  N  G  S  H  Q  H  N  L  A  S  P  N  S  Q  N  A  L  C  M  N  Q  T  R  V  S  Q  V  V  K  S  A  L  A  E  N  L  R  S  S  F  E  P  Y  S  F  T  K  L  N  T  V  T  C  Q  K  L  G  E  N  T  S  K  S  T  K  H  G  P  S  A  M  N  N  L  Q  L  T  V  L  S  E  C  F  R  V  S  *  K  P  S  S  V  P  S  V  I  T  R  E  L  T  S  Q  I  A  W :   G  L  A  A  V  F  L  I  V  I  L  P  F  P  L  I  S  E  E  D  G  E  S  F  T  A  L  P  A  K  V  E  E  E  R  A  I  V  E  A  A  I  M  N  S  *  N </second_frame>
            <third_frame>   G  P  F  P  V  T  I  A  *  T  K  N  P  N  M  E  N  I  A  S  L  P  F  L  I  S  F  T  L  S  S  A  K  A  S  G  S  S  A  R  P  N  G  S  K  L  P  P  G  *  S  G  S  T  T  S  P  R  G  P  P  A  I  R  *  P  S  T  A  P  I  N  T  T  W  Q  A  Q  I  A  K  M  L  C  A  *  T  K  L  G  F  P  K  *  S  S  P  P  S  L  K  I  *  D  P  A  L  N  H  T  A  S  P  N  L  T  P  L  R  A  K  S  S  G  K  T  H  P  R  A  P  S  M  A  H  L  Q  *  I  T  S  N  S  R  F  L  A  N  V  S  G  S  A  E  S  P  A  V  S  H  P  *  S  P  G  N  S  P  V  K  *  L   : G  A  W  Q  Q  S  S  S  L  *  F  S  H  F  H  *  F  Q  K  K  M  V  R  V  S  P  P  Y  R  R  K  *  R  R  K  E  P  *  *  K  Q  P  L  *  T  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42719" stop="43180"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WTLSSDNSLNKESKHGEHSKSAVLDLLHFELSKSLWVFSKAQWVKATTRVKWINNLTKRPTSNTVTLNGSHQHNLASPNSQNALCMNQTRVSQVVKSALAENLRSSFEPYSFTKLNTVTCQKLGENTSKSTKHGPSAMNNLQLTVLSECFRVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43181" stop="43236"/>
                    <exon start="43313" stop="43451"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPSSVPSVITRELTSQIAWGLAAVFLIVILPFPLISEEDGESFTALPAKVEEERAIVEAAIMNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="45375" PGL_stop="46419"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45375" e_stop="46419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="45375" e_stop="46419" e_length="1045"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45375" stop="45966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45375" stop="45793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45379" stop="46419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45393" stop="46233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45395" stop="45799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45508" stop="45675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45829" stop="46210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACATAACAACAACCATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCGTTGGAGAACCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCTTTTGCCACAAACTTTGTTCCCGGAAAGTGAGTGCAACAAACTCTTCTCCAATTAGTGTGAGATTATGAGTTTTTAGCTTTGTGAGAGATGAATCTGTAGAAGGGGTCAGTTTTTTAAAGCATTCTGGGTTATGGGTTCAGTACAAGATTATTGTAAATTGGTTTGGATTAATTAATGAATCTTTTCATCTTGCACAAGCAATTTTTAATATC</gDNA_template>
            <first_frame> K  H  N  N  N  H  Q  N  T  I  H  F  F  L  F  I  K  I  K  P  W  L  L  L  Q  W  L  F  P  P  L  P  S  P  E  R  R  *  N  S  H  H  L  L  L  K  S  V  E  M  G  E  L  Q  *  G  R  L  L  P  S  P  S  Q  L  P  L  V  A  H  G  M  V  L  T  V  L  S  T  W  A  H  S  L  V  N  H  Q  A  I  *  L  V  S  S  L  V  I  T  D  G  T  L  L  G  F  Q  L  T  L  K  H  S  L  R  T  V  S  W  R  L  F  I  A  D  G  P  C  L  V  L  L  D  V  F  S  P  S  F  W  H  V  T  V  L  S  L  V  K  L  Y  G  S  K  L  D  L  K  F  S  A  R  A  D  L  T  T  W  E  T  L  V  W  F  M  H  K  A  F  W  L  F  G  L  A  K  L  C  *  W  E  P  L  R  V  T  V  L  L  V  G  L  L  V  R  L  L  I  H  F  T  L  V  V  A  L  T  H  W  A  L  L  K  T  Q  R  L  L  L  S  S  R  *  R  R  S  R  M  V  D  L  L  C  S  P  C  L  D  S  L  F  K  L  L  S  P  E  R  V  R  W  R  T  L  P  T  T  L  L  T  Q  L  T  T  T  P  G  L  L  P  Q  T  L  F  P  E  S  E  C  N  K  L  F  S  N  *  C  E  I  M  S  F  *  L  C  E  R  *  I  C  R  R  G  Q  F  F  K  A  F  W  V  M  G  S  V  Q  D  Y  C  K  L  V  W  I  N  *  *  I  F  S  S  C  T  S  N  F  *  Y  </first_frame>
            <second_frame>  N  I  T  T  T  I  K  T  Q  F  I  S  F  Y  L  L  K  L  N  H  G  C  F  Y  N  G  S  F  L  L  Y  L  R  R  K  D  G  E  T  R  T  I  F  F  *  N  Q  W  K  W  E  N  Y  N  E  E  D  C  C  Q  A  Q  A  S  F  L  W  *  P  M  V  W  S  *  P  C  *  V  L  G  P  I  L  W  *  I  T  K  L  F  D  W  *  V  P  W  *  L  R  M  G  H  C  W  A  F  S  *  P  *  N  I  R  *  E  P  *  V  G  G  Y  S  L  Q  M  G  H  A  W  C  S  W  M  C  F  P  R  A  F  G  T  *  R  C  *  V  W  *  S  C  M  V  Q  S  W  I  S  N  F  Q  R  G  R  T  *  L  L  G  K  P  *  F  G  S  C  T  K  H  F  G  Y  L  G  L  P  S  C  V  D  G  S  R  *  G  L  P  Y  C  W  W  A  S  W  *  G  C  *  S  T  L  P  W  W  *  L  *  P  I  G  P  C  *  R  P  R  G  F  C  *  A  Q  G  E  G  D  Q  E  W  *  T  C  Y  V  L  H  V  W  I  L  C  S  S  Y  C  H  R  K  G  S  V  G  E  P  C  R  P  H  C  *  P  S  *  Q  Q  R  L  G  F  C  H  K  L  C  S  R  K  V  S  A  T  N  S  S  P  I  S  V  R  L  *  V  F  S  F  V  R  D  E  S  V  E  G  V  S  F  L  K  H  S  G  L  W  V  Q  Y  K  I  I  V  N  W  F  G  L  I  N  E  S  F  H  L  A  Q  A  I  F  N  I </second_frame>
            <third_frame>   T  *  Q  Q  P  S  K  H  N  S  F  L  F  I  Y  *  N  *  T  M  A  A  S  T  M  A  L  S  S  S  T  F  A  G  K  T  V  K  L  A  P  S  S  S  E  I  S  G  N  G  R  I  T  M  R  K  T  A  A  K  P  K  P  A  S  S  G  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  I  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  V  Q  Q  T  L  L  Q  L  V  *  D  Y  E  F  L  A  L  *  E  M  N  L  *  K  G  S  V  F  *  S  I  L  G  Y  G  F  S  T  R  L  L  *  I  G  L  D  *  L  M  N  L  F  I  L  H  K  Q  F  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45431" stop="46237"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMAASTMALSSSTFAGKTVKLAPSSSEISGNGRITMRKTAAKPKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45375" e_stop="45971"/>
            <exon e_start="46041" e_stop="46141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.956"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="45375" e_stop="45971" e_length="597"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45972" i_stop="46040" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="46041" e_stop="46141" e_length="101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45375" stop="45966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45375" stop="45793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45395" stop="45799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45420" stop="45971"/>
              <exon start="46041" stop="46141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45508" stop="45675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACATAACAACAACCATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCACCAAGCTATTTGACTGGTGAGTTCCCTGGTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTG : AAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACC</gDNA_template>
            <first_frame> K  H  N  N  N  H  Q  N  T  I  H  F  F  L  F  I  K  I  K  P  W  L  L  L  Q  W  L  F  P  P  L  P  S  P  E  R  R  *  N  S  H  H  L  L  L  K  S  V  E  M  G  E  L  Q  *  G  R  L  L  P  S  P  S  Q  L  P  L  V  A  H  G  M  V  L  T  V  L  S  T  W  A  H  S  L  V  N  H  Q  A  I  *  L  V  S  S  L  V  I  T  D  G  T  L  L  G  F  Q  L  T  L  K  H  S  L  R  T  V  S  W  R  L  F  I  A  D  G  P  C  L  V  L  L  D  V  F  S  P  S  F  W  H  V  T  V  L  S  L  V  K  L  Y  G  S  K  L  D  L  K  F  S  A  R  A  D  L  T  T  W  E  T  L  V  W  F  M  H  K  A  F  W  L  F  G  L  A  K  L  C  *  W  E  P  L  R  V  T  V  L  L  :  K  T  Q  R  L  L  L  S  S  R  *  R  R  S  R  M  V  D  L  L  C  S  P  C  L  D  S  L  F  K  L  L  S   </first_frame>
            <second_frame>  N  I  T  T  T  I  K  T  Q  F  I  S  F  Y  L  L  K  L  N  H  G  C  F  Y  N  G  S  F  L  L  Y  L  R  R  K  D  G  E  T  R  T  I  F  F  *  N  Q  W  K  W  E  N  Y  N  E  E  D  C  C  Q  A  Q  A  S  F  L  W  *  P  M  V  W  S  *  P  C  *  V  L  G  P  I  L  W  *  I  T  K  L  F  D  W  *  V  P  W  *  L  R  M  G  H  C  W  A  F  S  *  P  *  N  I  R  *  E  P  *  V  G  G  Y  S  L  Q  M  G  H  A  W  C  S  W  M  C  F  P  R  A  F  G  T  *  R  C  *  V  W  *  S  C  M  V  Q  S  W  I  S  N  F  Q  R  G  R  T  *  L  L  G  K  P  *  F  G  S  C  T  K  H  F  G  Y  L  G  L  P  S  C  V  D  G  S  R  *  G  L  P  Y  C  * :   R  P  R  G  F  C  *  A  Q  G  E  G  D  Q  E  W  *  T  C  Y  V  L  H  V  W  I  L  C  S  S  Y  C  H  </second_frame>
            <third_frame>   T  *  Q  Q  P  S  K  H  N  S  F  L  F  I  Y  *  N  *  T  M  A  A  S  T  M  A  L  S  S  S  T  F  A  G  K  T  V  K  L  A  P  S  S  S  E  I  S  G  N  G  R  I  T  M  R  K  T  A  A  K  P  K  P  A  S  S  G  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A   : E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45431" stop="45971"/>
                    <exon start="46041" stop="46141"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMAASTMALSSSTFAGKTVKLAPSSSEISGNGRITMRKTAAKPKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45387" e_stop="45575"/>
            <exon e_start="45663" e_stop="46210"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.963"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="45387" e_stop="45575" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45576" i_stop="45662" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="45663" e_stop="46210" e_length="548"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45387" stop="45575"/>
              <exon start="45663" stop="46100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45829" stop="46210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCATCAAAACACAATTCATTTCTTTTTATTTATTAAAATTAAACCATGGCTGCTTCTACAATGGCTCTTTCCTCCTCTACCTTCGCCGGAAAGACGGTGAAACTCGCACCATCTTCTTCTGAAATCAGTGGAAATGGGAGAATTACAATGAGGAAGACTGCTGCCAAGCCCAAGCCAGCTTCCTCTG : GTGATTACGGATGGGACACTGCTGGGCTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGCAGATGGGCCATGCTTGGTGCTCTTGGATGTGTTTTCCCCGAGCTTTTGGCACGTAACGGTGTTAAGTTTGGTGAAGCTGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCGTTGGAGAACCTTGCCGACCACATTGCTGACCCAGTTAACAACAACGCCTGGGCTTTT</gDNA_template>
            <first_frame> N  H  Q  N  T  I  H  F  F  L  F  I  K  I  K  P  W  L  L  L  Q  W  L  F  P  P  L  P  S  P  E  R  R  *  N  S  H  H  L  L  L  K  S  V  E  M  G  E  L  Q  *  G  R  L  L  P  S  P  S  Q  L  P  L  :  V  I  T  D  G  T  L  L  G  F  Q  L  T  L  K  H  S  L  R  T  V  S  W  R  L  F  I  A  D  G  P  C  L  V  L  L  D  V  F  S  P  S  F  W  H  V  T  V  L  S  L  V  K  L  Y  G  S  K  L  D  L  K  F  S  A  R  A  D  L  T  T  W  E  T  L  V  W  F  M  H  K  A  F  W  L  F  G  L  A  K  L  C  *  W  E  P  L  R  V  T  V  L  L  V  G  L  L  V  R  L  L  I  H  F  T  L  V  V  A  L  T  H  W  A  L  L  K  T  Q  R  L  L  L  S  S  R  *  R  R  S  R  M  V  D  L  L  C  S  P  C  L  D  S  L  F  K  L  L  S  P  E  R  V  R  W  R  T  L  P  T  T  L  L  T  Q  L  T  T  T  P  G  L   </first_frame>
            <second_frame>  T  I  K  T  Q  F  I  S  F  Y  L  L  K  L  N  H  G  C  F  Y  N  G  S  F  L  L  Y  L  R  R  K  D  G  E  T  R  T  I  F  F  *  N  Q  W  K  W  E  N  Y  N  E  E  D  C  C  Q  A  Q  A  S  F  L  W :   *  L  R  M  G  H  C  W  A  F  S  *  P  *  N  I  R  *  E  P  *  V  G  G  Y  S  L  Q  M  G  H  A  W  C  S  W  M  C  F  P  R  A  F  G  T  *  R  C  *  V  W  *  S  C  M  V  Q  S  W  I  S  N  F  Q  R  G  R  T  *  L  L  G  K  P  *  F  G  S  C  T  K  H  F  G  Y  L  G  L  P  S  C  V  D  G  S  R  *  G  L  P  Y  C  W  W  A  S  W  *  G  C  *  S  T  L  P  W  W  *  L  *  P  I  G  P  C  *  R  P  R  G  F  C  *  A  Q  G  E  G  D  Q  E  W  *  T  C  Y  V  L  H  V  W  I  L  C  S  S  Y  C  H  R  K  G  S  V  G  E  P  C  R  P  H  C  *  P  S  *  Q  Q  R  L  G  F  </second_frame>
            <third_frame>   P  S  K  H  N  S  F  L  F  I  Y  *  N  *  T  M  A  A  S  T  M  A  L  S  S  S  T  F  A  G  K  T  V  K  L  A  P  S  S  S  E  I  S  G  N  G  R  I  T  M  R  K  T  A  A  K  P  K  P  A  S  S   : G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  I  A  D  P  V  N  N  N  A  W  A  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45431" stop="45575"/>
                    <exon start="45663" stop="46210"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMAASTMALSSSTFAGKTVKLAPSSSEISGNGRITMRKTAAKPKPASSGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="46359" PGL_stop="45413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46359" e_stop="46168"/>
            <exon e_start="46059" e_stop="45413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.000" e_score="0.984"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="46359" e_stop="46168" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46167" i_stop="46060" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="46059" e_stop="45413" e_length="647"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46359" stop="46168"/>
              <exon start="46059" stop="45413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590668" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAATCTTGTACTGAACCCATAACCCAGAATGCTTTAAAAAACTGACCCCTTCTACAGATTCATCTCTCACAAAGCTAAAAACTCATAATCTCACACTAATTGGAGAAGAGTTTGTTGCACTCACTTTCCGGGAACAAAGTTTGTGGCAAAAGCCCAGGCGTTGTTGTTAACTGGGTCAGCAATGTGGTCG : GCAAAAGCCTCTGGGTCTTCAGCAAGGCCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGATCAACAACCTCACCAAGAGGCCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGGTTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTGGTGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGACCATACCATGGGCTACCAGAGGAAGCTGGCTTGGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCGTCTTTCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATGGTTTAATTTTAATAAATAAA</gDNA_template>
            <first_frame> N  N  L  V  L  N  P  *  P  R  M  L  *  K  T  D  P  F  Y  R  F  I  S  H  K  A  K  N  S  *  S  H  T  N  W  R  R  V  C  C  T  H  F  P  G  T  K  F  V  A  K  A  Q  A  L  L  L  T  G  S  A  M  W  S  :  A  K  A  S  G  S  S  A  R  P  N  G  S  K  L  P  P  G  *  S  G  S  T  T  S  P  R  G  P  P  A  I  R  *  P  S  T  A  P  I  N  T  T  W  Q  A  Q  I  A  K  M  L  C  A  *  T  K  L  G  F  P  K  *  S  S  P  P  S  L  K  I  *  D  P  A  L  N  H  T  A  S  P  N  L  T  P  L  R  A  K  S  S  G  K  T  H  P  R  A  P  S  M  A  H  L  Q  *  I  T  S  N  S  R  F  L  A  N  V  S  G  S  A  E  S  P  A  V  S  H  P  *  S  P  G  N  S  P  V  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  P  E  E  A  G  L  G  L  A  A  V  F  L  I  V  I  L  P  F  P  L  I  S  E  E  D  G  A  S  F  T  V  F  P  A  K  V  E  E  E  R  A  I  V  E  A  A  M  V  *  F  *  *  I   </first_frame>
            <second_frame>  I  I  L  Y  *  T  H  N  P  E  C  F  K  K  L  T  P  S  T  D  S  S  L  T  K  L  K  T  H  N  L  T  L  I  G  E  E  F  V  A  L  T  F  R  E  Q  S  L  W  Q  K  P  R  R  C  C  *  L  G  Q  Q  C  G  R :   Q  K  P  L  G  L  Q  Q  G  P  M  G  Q  S  Y  H  Q  G  K  V  D  Q  Q  P  H  Q  E  A  H  Q  Q  Y  G  N  P  Q  R  L  P  S  T  Q  L  G  K  P  K  *  P  K  C  F  V  H  E  P  N  *  G  F  P  S  S  Q  V  R  P  R  *  K  F  E  I  Q  L  *  T  I  Q  L  H  Q  T  *  H  R  Y  V  P  K  A  R  G  K  H  I  Q  E  H  Q  A  W  P  I  C  N  E  *  P  P  T  H  G  S  *  R  M  F  Q  G  Q  L  K  A  Q  Q  C  P  I  R  N  H  Q  G  T  H  Q  S  N  S  L  V  I  H  Q  R  M  G  P  S  T  *  H  G  Q  D  H  T  M  G  Y  Q  R  K  L  A  W  A  W  Q  Q  S  S  S  L  *  F  S  H  F  H  *  F  Q  K  K  M  V  R  V  S  P  S  F  R  R  R  *  R  R  K  E  P  L  *  K  Q  P  W  F  N  F  N  K  *  </second_frame>
            <third_frame>   *  S  C  T  E  P  I  T  Q  N  A  L  K  N  *  P  L  L  Q  I  H  L  S  Q  S  *  K  L  I  I  S  H  *  L  E  K  S  L  L  H  S  L  S  G  N  K  V  C  G  K  S  P  G  V  V  V  N  W  V  S  N  V  V   : G  K  S  L  W  V  F  S  K  A  Q  W  V  K  A  T  T  R  V  K  W  I  N  N  L  T  K  R  P  T  S  N  T  V  T  L  N  G  S  H  Q  H  N  L  A  S  P  N  S  Q  N  A  L  C  M  N  Q  T  R  V  S  Q  V  V  K  S  A  L  A  E  N  L  R  S  S  F  E  P  Y  S  F  T  K  L  N  T  V  T  C  Q  K  L  G  E  N  T  S  K  S  T  K  H  G  P  S  A  M  N  N  L  Q  L  T  V  L  S  E  C  F  R  V  S  *  K  P  S  S  V  P  S  V  I  T  R  E  L  T  S  Q  I  A  W  *  F  T  R  E  W  A  Q  V  L  N  T  V  R  T  I  P  W  A  T  R  G  S  W  L  G  L  G  S  S  L  P  H  C  N  S  P  I  S  T  D  F  R  R  R  W  C  E  F  H  R  L  S  G  E  G  R  G  G  K  S  H  C  R  S  S  H  G  L  I  L  I  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46258" stop="46168"/>
                    <exon start="46059" stop="45692"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEKSLLHSLSGNKVCGKSPGVVVNWVSNVVGKSLWVFSKAQWVKATTRVKWINNLTKRPTSNTVTLNGSHQHNLASPNSQNALCMNQTRVSQVVKSALAENLRSSFEPYSFTKLNTVTCQKLGENTSKSTKHGPSAMNNLQLTVLSECFRVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45631" stop="45413"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTREWAQVLNTVRTIPWATRGSWLGLGSSLPHCNSPISTDFRRRWCEFHRLSGEGRGGKSHCRSSHGLILINK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46125" e_stop="46030"/>
            <exon e_start="45979" e_stop="45433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.948"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="46125" e_stop="46030" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46029" i_stop="45980" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="45979" e_stop="45433" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46125" stop="46030"/>
              <exon start="45979" stop="45433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593153" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAGAATCCAAACATGGAGAACATAGCAAGTCTACCATTCTTGATCTCCTTCACCTTGAGCTCAGCAAAAGCCTCTGGGTCTTCAGCAAGGCCC : AGGCCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGGTTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTGGTGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGACCATACCATGGGCTACCAGAGGAAGCTGGCTTGGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCGTCTTTCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATG</gDNA_template>
            <first_frame> T  K  N  P  N  M  E  N  I  A  S  L  P  F  L  I  S  F  T  L  S  S  A  K  A  S  G  S  S  A  R  P  :  R  P  T  S  N  T  V  T  L  N  G  S  H  Q  H  N  L  A  S  P  N  S  Q  N  A  L  C  M  N  Q  T  R  V  S  Q  V  V  K  S  A  L  A  E  N  L  R  S  S  F  E  P  Y  S  F  T  K  L  N  T  V  T  C  Q  K  L  G  E  N  T  S  K  S  T  K  H  G  P  S  A  M  N  N  L  Q  L  T  V  L  S  E  C  F  R  V  S  *  K  P  S  S  V  P  S  V  I  T  R  E  L  T  S  Q  I  A  W  *  F  T  R  E  W  A  Q  V  L  N  T  V  R  T  I  P  W  A  T  R  G  S  W  L  G  L  G  S  S  L  P  H  C  N  S  P  I  S  T  D  F  R  R  R  W  C  E  F  H  R  L  S  G  E  G  R  G  G  K  S  H  C  R  S  S  H  </first_frame>
            <second_frame>  Q  R  I  Q  T  W  R  T  *  Q  V  Y  H  S  *  S  P  S  P  *  A  Q  Q  K  P  L  G  L  Q  Q  G  P :   G  P  P  A  I  R  *  P  S  T  A  P  I  N  T  T  W  Q  A  Q  I  A  K  M  L  C  A  *  T  K  L  G  F  P  K  *  S  S  P  P  S  L  K  I  *  D  P  A  L  N  H  T  A  S  P  N  L  T  P  L  R  A  K  S  S  G  K  T  H  P  R  A  P  S  M  A  H  L  Q  *  I  T  S  N  S  R  F  L  A  N  V  S  G  S  A  E  S  P  A  V  S  H  P  *  S  P  G  N  S  P  V  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  P  E  E  A  G  L  G  L  A  A  V  F  L  I  V  I  L  P  F  P  L  I  S  E  E  D  G  A  S  F  T  V  F  P  A  K  V  E  E  E  R  A  I  V  E  A  A  M </second_frame>
            <third_frame>   K  E  S  K  H  G  E  H  S  K  S  T  I  L  D  L  L  H  L  E  L  S  K  S  L  W  V  F  S  K  A   : Q  A  H  Q  Q  Y  G  N  P  Q  R  L  P  S  T  Q  L  G  K  P  K  *  P  K  C  F  V  H  E  P  N  *  G  F  P  S  S  Q  V  R  P  R  *  K  F  E  I  Q  L  *  T  I  Q  L  H  Q  T  *  H  R  Y  V  P  K  A  R  G  K  H  I  Q  E  H  Q  A  W  P  I  C  N  E  *  P  P  T  H  G  S  *  R  M  F  Q  G  Q  L  K  A  Q  Q  C  P  I  R  N  H  Q  G  T  H  Q  S  N  S  L  V  I  H  Q  R  M  G  P  S  T  *  H  G  Q  D  H  T  M  G  Y  Q  R  K  L  A  W  A  W  Q  Q  S  S  S  L  *  F  S  H  F  H  *  F  Q  K  K  M  V  R  V  S  P  S  F  R  R  R  *  R  R  K  E  P  L  *  K  Q  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46125" stop="46030"/>
                    <exon start="45979" stop="45692"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKNPNMENIASLPFLISFTLSSAKASGSSARPRPTSNTVTLNGSHQHNLASPNSQNALCMNQTRVSQVVKSALAENLRSSFEPYSFTKLNTVTCQKLGENTSKSTKHGPSAMNNLQLTVLSECFRVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45639" stop="45433"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGDSPENGPKYLTRSGPYHGLPEEAGLGLAAVFLIVILPFPLISEEDGASFTVFPAKVEEERAIVEAAM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="46154" e_stop="45636"/>
            <exon e_start="45559" e_stop="45418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="46154" e_stop="45636" e_length="519"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45635" i_stop="45560" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="45559" e_stop="45418" e_length="142"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46154" stop="45636"/>
              <exon start="45559" stop="45418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590177" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGGACCCTTTCCGGTGACAATAGCTTGAACAAAGAATCCAAACATGGAGAACATAGCAAGTCTACCATTCTTGATCTCCTTCACCTTGAGCTCAGCAAAAGCCTCTGGGTCTTCAGCAAGGCCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGATCAACAACCTCACCAAGAGGCCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATAGCCAAAATGCTTTGTGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGTCCGCCCTCGCTGAAAATTTGAGATCCAGCTTTGAACCATACAGCTTCACCAAACTTAACACCGTTACGTGCCAAAAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATGGCCCATCTGCAATGAATAACCTCCAACTCACGGTTCTTAGCGAATGTTTCAGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAAATAGCTTG : GGGCTTGGCAGCAGTCTTCCTCATTGTAATTCTCCCATTTCCACTGATTTCAGAAGAAGATGGTGCGAGTTTCACCGTCTTTCCGGCGAAGGTAGAGGAGGAAAGAGCCATTGTAGAAGCAGCCATGGTTTAATTTTAATAA</gDNA_template>
            <first_frame> T  D  P  F  R  *  Q  *  L  E  Q  R  I  Q  T  W  R  T  *  Q  V  Y  H  S  *  S  P  S  P  *  A  Q  Q  K  P  L  G  L  Q  Q  G  P  M  G  Q  S  Y  H  Q  G  K  V  D  Q  Q  P  H  Q  E  A  H  Q  Q  Y  G  N  P  Q  R  L  P  S  T  Q  L  G  K  P  K  *  P  K  C  F  V  H  E  P  N  *  G  F  P  S  S  Q  V  R  P  R  *  K  F  E  I  Q  L  *  T  I  Q  L  H  Q  T  *  H  R  Y  V  P  K  A  R  G  K  H  I  Q  E  H  Q  A  W  P  I  C  N  E  *  P  P  T  H  G  S  *  R  M  F  Q  G  Q  L  K  A  Q  Q  C  P  I  R  N  H  Q  G  T  H  Q  S  N  S  L  :  G  L  G  S  S  L  P  H  C  N  S  P  I  S  T  D  F  R  R  R  W  C  E  F  H  R  L  S  G  E  G  R  G  G  K  S  H  C  R  S  S  H  G  L  I  L  I  </first_frame>
            <second_frame>  R  T  L  S  G  D  N  S  L  N  K  E  S  K  H  G  E  H  S  K  S  T  I  L  D  L  L  H  L  E  L  S  K  S  L  W  V  F  S  K  A  Q  W  V  K  A  T  T  R  V  K  W  I  N  N  L  T  K  R  P  T  S  N  T  V  T  L  N  G  S  H  Q  H  N  L  A  S  P  N  S  Q  N  A  L  C  M  N  Q  T  R  V  S  Q  V  V  K  S  A  L  A  E  N  L  R  S  S  F  E  P  Y  S  F  T  K  L  N  T  V  T  C  Q  K  L  G  E  N  T  S  K  S  T  K  H  G  P  S  A  M  N  N  L  Q  L  T  V  L  S  E  C  F  R  V  S  *  K  P  S  S  V  P  S  V  I  T  R  E  L  T  S  Q  I  A  W :   G  L  A  A  V  F  L  I  V  I  L  P  F  P  L  I  S  E  E  D  G  A  S  F  T  V  F  P  A  K  V  E  E  E  R  A  I  V  E  A  A  M  V  *  F  *  * </second_frame>
            <third_frame>   G  P  F  P  V  T  I  A  *  T  K  N  P  N  M  E  N  I  A  S  L  P  F  L  I  S  F  T  L  S  S  A  K  A  S  G  S  S  A  R  P  N  G  S  K  L  P  P  G  *  S  G  S  T  T  S  P  R  G  P  P  A  I  R  *  P  S  T  A  P  I  N  T  T  W  Q  A  Q  I  A  K  M  L  C  A  *  T  K  L  G  F  P  K  *  S  S  P  P  S  L  K  I  *  D  P  A  L  N  H  T  A  S  P  N  L  T  P  L  R  A  K  S  S  G  K  T  H  P  R  A  P  S  M  A  H  L  Q  *  I  T  S  N  S  R  F  L  A  N  V  S  G  S  A  E  S  P  A  V  S  H  P  *  S  P  G  N  S  P  V  K  *  L   : G  A  W  Q  Q  S  S  S  L  *  F  S  H  F  H  *  F  Q  K  K  M  V  R  V  S  P  S  F  R  R  R  *  R  R  K  E  P  L  *  K  Q  P  W  F  N  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46153" stop="45692"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTLSGDNSLNKESKHGEHSKSTILDLLHLELSKSLWVFSKAQWVKATTRVKWINNLTKRPTSNTVTLNGSHQHNLASPNSQNALCMNQTRVSQVVKSALAENLRSSFEPYSFTKLNTVTCQKLGENTSKSTKHGPSAMNNLQLTVLSECFRVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45713" stop="45636"/>
                    <exon start="45559" stop="45419"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMFQGQLKAQQCPIRNHQGTHQSNSLGLGSSLPHCNSPISTDFRRRWCEFHRLSGEGRGGKSHCRSSHGLILI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="52617" PGL_stop="46823"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52617" e_stop="52412"/>
            <exon e_start="51888" e_stop="51621"/>
            <exon e_start="49904" e_stop="49749"/>
            <exon e_start="48426" e_stop="47965"/>
            <exon e_start="47430" e_stop="46823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="0.995"/>
          <exon-intron don_prob="0.983" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="0.992"/>
          <exon-intron don_prob="0.990" acc_prob="0.486" e_score="0.998"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="52617" e_stop="52412" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="52411" i_stop="51889" i_length="523"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51888" e_stop="51621" e_length="268"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.988">
            <gDNA_intron_boundary i_start="51620" i_stop="49905" i_length="1716"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="49904" e_stop="49749" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49748" i_stop="48427" i_length="1322"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="48426" e_stop="47965" e_length="462"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.486">
            <gDNA_intron_boundary i_start="47964" i_stop="47431" i_length="534"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="47430" e_stop="46823" e_length="608"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52617" stop="52412"/>
              <exon start="51888" stop="51621"/>
              <exon start="49904" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49876" stop="49749"/>
              <exon start="48426" stop="47965"/>
              <exon start="47430" stop="46823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGGGTTTGCCATCTGATGGGGATAGTCCATCTGTTGTGATTCCAGACCATCTTCAAGTTCAAACAGCTGACTGCTCACACCTAAGTTTTGGTAGCTTTGGTGGTGTGTCCTTCTCTGGATCACTGGCCTCTGCCCCCGTGAAAACTAGCTTGGAAGATGCATCCAGAGATGCAGATAGTTCTTCAGTTGGGCACTTGGGCACCAG : GGCCACTGAATACTATGGTGATGGTACTCTCAGAAATGAGGCTGATAGTAATTTATTCCACAGAAATAATGCAAATGCTGGAAATTATGAACTGCCAGCAGCTTCACAACCAGAATCTCTGAAAGCAGAAGCTAGTGATGGGCATTATTCATATCCGTCCTCTGCTGCTGGCTATTCATACGAAAGTGCTCAACAATTGAATGCAGCGTTTAGTCAGCCACAGACGAGTTCTCATATGCAAAATCTTGCTTCTTTCTCAAATGAGACA : GTCTACACAAATTCTTTGCAGAGTGACATGTTGACTGCTAACGTGCATCCTGGTCGAGAGTCTGAGCTTTCATATTCTCCTTTTTCTACAACACAAGCAATGCCCACAAAATATGGCAACTCAATTTCATCAATCAGTGGTTCAGCTATGCCTGAG : GCTATGAAGACAGTTGGCTTTTCATCAGCACAGCCTACTCAGCAGATGCTTTCTGGAAATAGTGTCGCCACAGGACCTGGCGTACCACAACACCTAACTGTACACCAATATTCTCAACAAGCTGTTCCTATTGCCCCATATGGCAACATGATTAGTTATCCCTTTGTGCCTCAGAACTATTCATATATTCCATCTGCATTCCAACAAGCATATCCTGGTAATAGCAGTTACCATCAGTCGCTTGCAGCAATGCTCCCCCAATATAAGAATACCGTTTCTGCCAGCAGCTTGCCTCAATCTGCCACTATTCCTTCTGGATATGGTGCTTTTGGAAATACAACAAGTATCCCCGGGAACTTCCCAATCAACCCCCCTGCTGCTCCATCTGGTACTAACTTAAGTTACGATGATGTATTAAGTGCTCAGTTCAAGGATACCAATCATTTGATGTCTCTTCAGCAG : AATGAGAACTCAGCTTTGTGGCTTCATGGACATGGTTCAAGAACAATGCCAACTGTTCCCGCCAACACGTATTATGGCTTTCAGGGACAGAATCAGCAAACGGGCGGATTTAGGCAAGGCCAACAGCCATCACAGAGCTATGGATCTTTGGGGGGCTACCCACATTTCTACAATTCTCAGGCTGGTATCTCGTTGGACCAACAACAGCAAGAAAACCTTCGAGATGGATCGTTGTCTGGTTCACAAGGCCAGCCAAAGCAGTCTCAACAACAGTTATGGCAAAACGGCTACTAAATCTTACTGCCTCCCTTGTTTTTCTGTTCTTTCTTTTTTTGGGGTCTTGTAATGAGTGTGAAAGTGGCCTTTCCAGCTCTCTCTGTTGAAATAACCCTCGTTCACGATCCCTGAAGAAACTTGACTGGGTGCTGCCCTGTGCCATGACTCTGTACTTTACGTGTTTATCTCAGATTTAAATGTAACGTAGGTAATGTCTGAGTTAACACAGTGCTCTAGTCGTCTCGTCTGTGTTTTTTCTTTTAGCTCTTGTTTAACACGGTTAACCCCCCTTTTCGTCGTTTTTAATCTATAGTTGCTAGTGTTTTTTTCCC</gDNA_template>
            <first_frame> A  G  L  P  S  D  G  D  S  P  S  V  V  I  P  D  H  L  Q  V  Q  T  A  D  C  S  H  L  S  F  G  S  F  G  G  V  S  F  S  G  S  L  A  S  A  P  V  K  T  S  L  E  D  A  S  R  D  A  D  S  S  S  V  G  H  L  G  T  R :   A  T  E  Y  Y  G  D  G  T  L  R  N  E  A  D  S  N  L  F  H  R  N  N  A  N  A  G  N  Y  E  L  P  A  A  S  Q  P  E  S  L  K  A  E  A  S  D  G  H  Y  S  Y  P  S  S  A  A  G  Y  S  Y  E  S  A  Q  Q  L  N  A  A  F  S  Q  P  Q  T  S  S  H  M  Q  N  L  A  S  F  S  N  E  T  :  V  Y  T  N  S  L  Q  S  D  M  L  T  A  N  V  H  P  G  R  E  S  E  L  S  Y  S  P  F  S  T  T  Q  A  M  P  T  K  Y  G  N  S  I  S  S  I  S  G  S  A  M  P  E  :  A  M  K  T  V  G  F  S  S  A  Q  P  T  Q  Q  M  L  S  G  N  S  V  A  T  G  P  G  V  P  Q  H  L  T  V  H  Q  Y  S  Q  Q  A  V  P  I  A  P  Y  G  N  M  I  S  Y  P  F  V  P  Q  N  Y  S  Y  I  P  S  A  F  Q  Q  A  Y  P  G  N  S  S  Y  H  Q  S  L  A  A  M  L  P  Q  Y  K  N  T  V  S  A  S  S  L  P  Q  S  A  T  I  P  S  G  Y  G  A  F  G  N  T  T  S  I  P  G  N  F  P  I  N  P  P  A  A  P  S  G  T  N  L  S  Y  D  D  V  L  S  A  Q  F  K  D  T  N  H  L  M  S  L  Q  Q  :  N  E  N  S  A  L  W  L  H  G  H  G  S  R  T  M  P  T  V  P  A  N  T  Y  Y  G  F  Q  G  Q  N  Q  Q  T  G  G  F  R  Q  G  Q  Q  P  S  Q  S  Y  G  S  L  G  G  Y  P  H  F  Y  N  S  Q  A  G  I  S  L  D  Q  Q  Q  Q  E  N  L  R  D  G  S  L  S  G  S  Q  G  Q  P  K  Q  S  Q  Q  Q  L  W  Q  N  G  Y  *  I  L  L  P  P  L  F  F  C  S  F  F  F  W  G  L  V  M  S  V  K  V  A  F  P  A  L  S  V  E  I  T  L  V  H  D  P  *  R  N  L  T  G  C  C  P  V  P  *  L  C  T  L  R  V  Y  L  R  F  K  C  N  V  G  N  V  *  V  N  T  V  L  *  S  S  R  L  C  F  F  F  *  L  L  F  N  T  V  N  P  P  F  R  R  F  *  S  I  V  A  S  V  F  F   </first_frame>
            <second_frame>  R  V  C  H  L  M  G  I  V  H  L  L  *  F  Q  T  I  F  K  F  K  Q  L  T  A  H  T  *  V  L  V  A  L  V  V  C  P  S  L  D  H  W  P  L  P  P  *  K  L  A  W  K  M  H  P  E  M  Q  I  V  L  Q  L  G  T  W  A  P   : G  P  L  N  T  M  V  M  V  L  S  E  M  R  L  I  V  I  Y  S  T  E  I  M  Q  M  L  E  I  M  N  C  Q  Q  L  H  N  Q  N  L  *  K  Q  K  L  V  M  G  I  I  H  I  R  P  L  L  L  A  I  H  T  K  V  L  N  N  *  M  Q  R  L  V  S  H  R  R  V  L  I  C  K  I  L  L  L  S  Q  M  R  Q :   S  T  Q  I  L  C  R  V  T  C  *  L  L  T  C  I  L  V  E  S  L  S  F  H  I  L  L  F  L  Q  H  K  Q  C  P  Q  N  M  A  T  Q  F  H  Q  S  V  V  Q  L  C  L  R :   L  *  R  Q  L  A  F  H  Q  H  S  L  L  S  R  C  F  L  E  I  V  S  P  Q  D  L  A  Y  H  N  T  *  L  Y  T  N  I  L  N  K  L  F  L  L  P  H  M  A  T  *  L  V  I  P  L  C  L  R  T  I  H  I  F  H  L  H  S  N  K  H  I  L  V  I  A  V  T  I  S  R  L  Q  Q  C  S  P  N  I  R  I  P  F  L  P  A  A  C  L  N  L  P  L  F  L  L  D  M  V  L  L  E  I  Q  Q  V  S  P  G  T  S  Q  S  T  P  L  L  L  H  L  V  L  T  *  V  T  M  M  Y  *  V  L  S  S  R  I  P  I  I  *  C  L  F  S  R :   M  R  T  Q  L  C  G  F  M  D  M  V  Q  E  Q  C  Q  L  F  P  P  T  R  I  M  A  F  R  D  R  I  S  K  R  A  D  L  G  K  A  N  S  H  H  R  A  M  D  L  W  G  A  T  H  I  S  T  I  L  R  L  V  S  R  W  T  N  N  S  K  K  T  F  E  M  D  R  C  L  V  H  K  A  S  Q  S  S  L  N  N  S  Y  G  K  T  A  T  K  S  Y  C  L  P  C  F  S  V  L  S  F  F  G  V  L  *  *  V  *  K  W  P  F  Q  L  S  L  L  K  *  P  S  F  T  I  P  E  E  T  *  L  G  A  A  L  C  H  D  S  V  L  Y  V  F  I  S  D  L  N  V  T  *  V  M  S  E  L  T  Q  C  S  S  R  L  V  C  V  F  S  F  S  S  C  L  T  R  L  T  P  L  F  V  V  F  N  L  *  L  L  V  F  F  S  </second_frame>
            <third_frame>   G  F  A  I  *  W  G  *  S  I  C  C  D  S  R  P  S  S  S  S  N  S  *  L  L  T  P  K  F  W  *  L  W  W  C  V  L  L  W  I  T  G  L  C  P  R  E  N  *  L  G  R  C  I  Q  R  C  R  *  F  F  S  W  A  L  G  H  Q  :  G  H  *  I  L  W  *  W  Y  S  Q  K  *  G  *  *  *  F  I  P  Q  K  *  C  K  C  W  K  L  *  T  A  S  S  F  T  T  R  I  S  E  S  R  S  *  *  W  A  L  F  I  S  V  L  C  C  W  L  F  I  R  K  C  S  T  I  E  C  S  V  *  S  A  T  D  E  F  S  Y  A  K  S  C  F  F  L  K  *  D   : S  L  H  K  F  F  A  E  *  H  V  D  C  *  R  A  S  W  S  R  V  *  A  F  I  F  S  F  F  Y  N  T  S  N  A  H  K  I  W  Q  L  N  F  I  N  Q  W  F  S  Y  A  *   : G  Y  E  D  S  W  L  F  I  S  T  A  Y  S  A  D  A  F  W  K  *  C  R  H  R  T  W  R  T  T  T  P  N  C  T  P  I  F  S  T  S  C  S  Y  C  P  I  W  Q  H  D  *  L  S  L  C  A  S  E  L  F  I  Y  S  I  C  I  P  T  S  I  S  W  *  *  Q  L  P  S  V  A  C  S  N  A  P  P  I  *  E  Y  R  F  C  Q  Q  L  A  S  I  C  H  Y  S  F  W  I  W  C  F  W  K  Y  N  K  Y  P  R  E  L  P  N  Q  P  P  C  C  S  I  W  Y  *  L  K  L  R  *  C  I  K  C  S  V  Q  G  Y  Q  S  F  D  V  S  S  A   : E  *  E  L  S  F  V  A  S  W  T  W  F  K  N  N  A  N  C  S  R  Q  H  V  L  W  L  S  G  T  E  S  A  N  G  R  I  *  A  R  P  T  A  I  T  E  L  W  I  F  G  G  L  P  T  F  L  Q  F  S  G  W  Y  L  V  G  P  T  T  A  R  K  P  S  R  W  I  V  V  W  F  T  R  P  A  K  A  V  S  T  T  V  M  A  K  R  L  L  N  L  T  A  S  L  V  F  L  F  F  L  F  L  G  S  C  N  E  C  E  S  G  L  S  S  S  L  C  *  N  N  P  R  S  R  S  L  K  K  L  D  W  V  L  P  C  A  M  T  L  Y  F  T  C  L  S  Q  I  *  M  *  R  R  *  C  L  S  *  H  S  A  L  V  V  S  S  V  F  F  L  L  A  L  V  *  H  G  *  P  P  F  S  S  F  L  I  Y  S  C  *  C  F  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52617" stop="52412"/>
                    <exon start="51888" stop="51621"/>
                    <exon start="49904" stop="49749"/>
                    <exon start="48426" stop="47965"/>
                    <exon start="47430" stop="47137"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1383</number_coding_nucleotides>
                  <number_encoded_amino_acids>461</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGLPSDGDSPSVVIPDHLQVQTADCSHLSFGSFGGVSFSGSLASAPVKTSLEDASRDADSSSVGHLGTRATEYYGDGTLRNEADSNLFHRNNANAGNYELPAASQPESLKAEASDGHYSYPSSAAGYSYESAQQLNAAFSQPQTSSHMQNLASFSNETVYTNSLQSDMLTANVHPGRESELSYSPFSTTQAMPTKYGNSISSISGSAMPEAMKTVGFSSAQPTQQMLSGNSVATGPGVPQHLTVHQYSQQAVPIAPYGNMISYPFVPQNYSYIPSAFQQAYPGNSSYHQSLAAMLPQYKNTVSASSLPQSATIPSGYGAFGNTTSIPGNFPINPPAAPSGTNLSYDDVLSAQFKDTNHLMSLQQNENSALWLHGHGSRTMPTVPANTYYGFQGQNQQTGGFRQGQQPSQSYGSLGGYPHFYNSQAGISLDQQQQENLRDGSLSGSQGQPKQSQQQLWQNGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="62940" PGL_stop="64785"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62940" e_stop="63005"/>
            <exon e_start="64205" e_stop="64785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.939"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="62940" e_stop="63005" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63006" i_stop="64204" i_length="1199"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="64205" e_stop="64785" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62940" stop="63005"/>
              <exon start="64205" stop="64785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575381" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATTACAATACAATTTTACTTTTCTTTTACCTCCTCCTCTCTTCTCCGTCTTCAATCGCCGCCG : ATGGATTGGCAAGGACAAAAGCTCGTGGAACAATTGATGCAGATACTGCTTGTGAGCTTTGGTGTGGTAGCATTCCTCACAGGCTATATGTTGGGCTCGTTCCAAACTATGCTGTTAACATACGCTGGTGGTGTTGTCTTTACGGCCCTTCTCACCATACCTAACTGGCCTGTCTATAATCGCAACCCTCTCAATTGGTTGGACCCAAGTGTAGTCGAGAAGTATCCCAAACCACTGCCTGCTACTACTGGTTCCAAGAAGAAGAGCACTAAGAAGTAGGTCATTTGACTGATATTCCGCTGACATTTCACTTGGTCTTTCTACAGAAAACTATTATGATGTATCAAATACAGTCGGTGGTTTTTTGGTATGAGCTGAACGTTTTATGCTCTCGGTGAATTTTGTCAGTGCTATAAGAAAGATTTAGTTTTGATATTGTTGTGCCATTTCTCTTCTATTCCTAAATTTTATATGTGAACTGCCTATTTATTTGCATATCATCTGAAAATAACCGGTCTCTATCCAAACACAAGTTGTGTTTGGATGAAAGGACTATAAGTAATTTTGATTTCCTGCGATGG</gDNA_template>
            <first_frame> I  I  T  I  Q  F  Y  F  S  F  T  S  S  S  L  L  R  L  Q  S  P  P  :  M  D  W  Q  G  Q  K  L  V  E  Q  L  M  Q  I  L  L  V  S  F  G  V  V  A  F  L  T  G  Y  M  L  G  S  F  Q  T  M  L  L  T  Y  A  G  G  V  V  F  T  A  L  L  T  I  P  N  W  P  V  Y  N  R  N  P  L  N  W  L  D  P  S  V  V  E  K  Y  P  K  P  L  P  A  T  T  G  S  K  K  K  S  T  K  K  *  V  I  *  L  I  F  R  *  H  F  T  W  S  F  Y  R  K  L  L  *  C  I  K  Y  S  R  W  F  F  G  M  S  *  T  F  Y  A  L  G  E  F  C  Q  C  Y  K  K  D  L  V  L  I  L  L  C  H  F  S  S  I  P  K  F  Y  M  *  T  A  Y  L  F  A  Y  H  L  K  I  T  G  L  Y  P  N  T  S  C  V  W  M  K  G  L  *  V  I  L  I  S  C  D   </first_frame>
            <second_frame>  L  L  Q  Y  N  F  T  F  L  L  P  P  P  L  F  S  V  F  N  R  R  R :   W  I  G  K  D  K  S  S  W  N  N  *  C  R  Y  C  L  *  A  L  V  W  *  H  S  S  Q  A  I  C  W  A  R  S  K  L  C  C  *  H  T  L  V  V  L  S  L  R  P  F  S  P  Y  L  T  G  L  S  I  I  A  T  L  S  I  G  W  T  Q  V  *  S  R  S  I  P  N  H  C  L  L  L  L  V  P  R  R  R  A  L  R  S  R  S  F  D  *  Y  S  A  D  I  S  L  G  L  S  T  E  N  Y  Y  D  V  S  N  T  V  G  G  F  L  V  *  A  E  R  F  M  L  S  V  N  F  V  S  A  I  R  K  I  *  F  *  Y  C  C  A  I  S  L  L  F  L  N  F  I  C  E  L  P  I  Y  L  H  I  I  *  K  *  P  V  S  I  Q  T  Q  V  V  F  G  *  K  D  Y  K  *  F  *  F  P  A  M  </second_frame>
            <third_frame>   Y  Y  N  T  I  L  L  F  F  Y  L  L  L  S  S  P  S  S  I  A  A   : D  G  L  A  R  T  K  A  R  G  T  I  D  A  D  T  A  C  E  L  W  C  G  S  I  P  H  R  L  Y  V  G  L  V  P  N  Y  A  V  N  I  R  W  W  C  C  L  Y  G  P  S  H  H  T  *  L  A  C  L  *  S  Q  P  S  Q  L  V  G  P  K  C  S  R  E  V  S  Q  T  T  A  C  Y  Y  W  F  Q  E  E  E  H  *  E  V  G  H  L  T  D  I  P  L  T  F  H  L  V  F  L  Q  K  T  I  M  M  Y  Q  I  Q  S  V  V  F  W  Y  E  L  N  V  L  C  S  R  *  I  L  S  V  L  *  E  R  F  S  F  D  I  V  V  P  F  L  F  Y  S  *  I  L  Y  V  N  C  L  F  I  C  I  S  S  E  N  N  R  S  L  S  K  H  K  L  C  L  D  E  R  T  I  S  N  F  D  F  L  R  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0103M17.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62940" stop="63005"/>
                    <exon start="64205" stop="64483"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IITIQFYFSFTSSSLLRLQSPPMDWQGQKLVEQLMQILLVSFGVVAFLTGYMLGSFQTMLLTYAGGVVFTALLTIPNWPVYNRNPLNWLDPSVVEKYPKPLPATTGSKKKSTKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 117 chains have been computed
$ 
$ memory statistics:
$ 68648 bytes spliced alignments in total
$ 29 spliced alignments have been stored
$ 2367 bytes was the average size of a spliced alignment
$ 21192 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1630 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 147 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:39:13
-->
