<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:33:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="19343" stop="20342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19642" g_stop="20043" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19642" e_stop="20043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCT-TTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATATGCTTAATTGTATGCAAGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTGATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGATATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAAGGAGATTTAGGGGATCGAGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGA-TTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391780" ref_strand="-" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>atcaacaaatactatatcattaacaattaccgtcaagttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagattgagtatattaacatctttcaagattcattatctttatttctcttgtgtcggtacgtgacactccgctccctcaatattcattaatcctcttgtgtcggtacgtgacactccgatcccctaaatctatatgtcggtttgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="-" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="20752" stop="19834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20452" g_stop="20255" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20254" i_stop="20173" i_length="82">
            <donor d_prob="0.347" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20172" g_stop="20134" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="239" r_length="40" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20452" e_stop="20255"/>
          <exon e_start="20172" e_stop="20134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAATACTATATCATTAACAGTTACCGTCCATTTCACACATGAGGACTCAAGCCTCGATACCATACTCATTTGGGAATCATATTCATTAAATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGATTCGTGACAC-CCGATCCCCTAAATCTACATGTCAGTTCGTGA</genome_strand>
        <mrna_strand>ATCAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTAC..................................................................................GTGACACTCCGATCCCCTAAATCTATATGTCGGTTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246710" ref_strand="-" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>agtccaagctagaagcattagctcaccctgaatttccgatgtagtaagactggcttgaattactgttgagttgaacacgatggcacgtttgctgcactccacaaataaacaagaagagaacataaaagtaggggtcagtacaaaacacgggtactgagtagatatcatcggccaactcaaaatagaaatcaatatatataccaagtaatatcataaaatcaactatgatactcaacatgtagcaacaacaaatactatatcattaacaattaccgtcaagttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagattgagtatattaacatctttcaagattcattatctttatttctcttgtgtcggtacgtgacactccgctccctcaatattcattaatcctcttgtgtcggtacgtgacactccgatcccctaaatctatatgtcggtttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="-" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="20993" stop="19835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20693" g_stop="20255" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20254" i_stop="20173" i_length="82">
            <donor d_prob="0.347" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20172" g_stop="20135" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="481" r_length="39" r_score="0.868"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20693" e_stop="20255"/>
          <exon e_start="20172" e_stop="20135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGCAAGACTGACTTGAATTACTGTTGAGTTGAAGACGATGGCACGTTTGCTGCAATCAACAATTAAACAAGAAGAGAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATC-A-ATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAGTTACCGTCCATTTCACACATGAGGACTCAAGCCTCGATACCATACTCATTTGGGAATCATATTCATTAAATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGATTCGTGACAC-CCGATCCCCTAAATCTACATGTCAGTTCGTG</genome_strand>
        <mrna_strand>AGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAATTACTGTTGAGTTGAACACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAGAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTAC..................................................................................GTGACACTCCGATCCCCTAAATCTATATGTCGGTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351228" ref_strand="+" ref_description="SGN-E351228 [cTOS-6-M24]">
      <seq>aaatacccacccttattgtgatagcgataatcgaaagagagagagatgcatctatggccatctatgagattaagggattctttcaaattgggttacttgaagaatcttgaatggaatctccatagaatgaacagtcagaagcaacgtgataacgatcagaagcttttggatgagccaaccaccagttctaataacggtactagagaaaaatttgagctgttttgtagagaattcctcatgatcctttcttgctgctactgttgtttctgctgtggagcttgtgttgctgatgaagatgactaaaaggcagaaagaaattgaaagaaatattttgagacttgttgaaaatagtttgttgtaatttaagcttcacagctgttgtgctaattcagttattcttcatctgtctaaaattatattaaccgtagattaggaaatgatttaggtttcatttaatggtaaatctcaatgactgcaagttttgtatcgtgataaagaggaaaggctcaaaatagtccattatctttggattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="-" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="66477" stop="61623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66177" g_stop="65901" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65900" i_stop="62180" i_length="3721">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62179" g_stop="61923" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="534" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="-" ref_id="SGN-E351228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66177" e_stop="65901"/>
          <exon e_start="62179" e_stop="61923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACCCACCCTTATTGTGATAGCGATAATCGAAAGAGAGAGAGATGCATCTATGGCCATCTATGAGATTAAGGGATTCTTTCAAATTGGGTTACTTGAAGAATCTTGAATGGAATCTCCATAGAATGAACAGTCAGAAGCAACGTGATAACGATCAGAAGCTTTTGGATGAGCCAACCACCAGTTCTAATAACGGTACTAGAGAAAAATTTGAGCTGTTTTGTAGAGAATTCCTCATGATCCTTTCTTGCTGCTACTGTTGTTTCTGCTGTGGAGGTACTTTTTGTTTCTGGGTTCATGCTTTCTTTGTTTGGATTTTCCTTTCTGTTTTTATAACATTTCCCAATTACCCAGATTTCAATCGATTCATTTGATTTGAGGAGTTATCTGGTGCGCTGCTAAAATAAAGATTTAAGGCATATGTGTTGTATCAACAAAGTAAAACAGAAAATAGATTTGAAGCTGTAACAGTTTCTGAGAGGCACTTAGTAACCAAACTTATGCAATCAAATTTATTCCCACATGGATCCTTTCTGAATTATTATTCTCGGATAGTTTGCCCATTTCCATCCCCATTGCATCGTTGTAAACCTGTTCATGGAAGATTTCTCACGCCTAATTTCCTCTAAACAAGTGAAAAGCTCACCTAGTCTAAGAAAATGGGGGTGTTTCAAGTAAGCTAAGCAACTGCTACACAATTTTGAGTTAGAACCATATACGCAGAAAGCAGGGAGGTAAATCCAAGTCAATTTTATCTAAAGATACTATTGTTTATCAAAGGTTGGGTTTATCATTCATTTCTTGACCGTTCAAATCTATAAATCTTCTCCCATTCTAGTGTTAAGCATACATTGGCACTCTGTGGTATTGTGTACTTTACAAGGGCCTCATTTACTTAAGTTTAATCATATAAGCTTTCAGTTCAAAATGTGGTAAAGTCCTTCACTCAAGGGAAGAGCATCATTCTGGACTAGAAATCAACCTTGTATGGTTGTGCCTCAATATACTGAGTCAGGAGGCCCCCCTTTACAAGTGCTATCCATGAAGCTTTGTAGTACAGGCACAAAAGAAAAGAAAATAATGTGTATATGTTTGCATTTATGTGTAGTTGATTTCCAAAGATTAGGGAATATACCTGCTGCTAGACATTGCTTTCACTTATATTTGCTCTATATTGCGTGAGTTCCACTTGTAGCATACAAATCAATGTTTACATAATCAGAAATAAGAATTAAAGTTGCAAAAGCTGCAGTAGGATCCTGTTTAACCTTTCAACAGAAAGTTGAAATAGATGAACGAACTACCATATACTATCTCTAGAGGCACAACCGCACAAGTTTTGTACTTTATAAGCTCATTTATCATTGAGCTCAAATTATGTAGAGCTACTGTAGGAAGTTCCTTCCAGGAAAACCAAATTCCTTAGTACACTATGAGCAAGGAGTATATCATTGAAACACAGACAAAAGGGAGACACTGCAAATTGTCAAGCCAGAATAAGTAATATTATTAGGATTGACACTGTAAAGAAACAAAAGTCATTACAAAATTATAGTAGCTTTTGCTAGAACTTATAGTGCAGTAGGCAAATATGATCCCGGTTTTTGTTTCCTTCTCTTTGGAGCTCTAGCAATGATCATGCTGTTTTAATGGCAGGGTTTGTATTCAAAATTTGATATAGTTTTGGTGGTCCTATTCAAATACTTTGATATCGTGTCGACGTGATTATTTGTTGTGCTCTACAGTCGGAAACTTTCTGGTGGATTTGAGATCAAAAGTGATGAAGTGTGAGGGAGAGGATCTAATTCAGAGTTTTACAATCAGTTTTAGTCTTGTTTTGATGATACTGGTGATTGACGATATAAGGGATCTGTTTAGGAGCATGTGTCCCAAGAGGGTTCACATGAATCCACTTGGTTGAAATTGTTTAATATTATTTTAGTTTATTTAATGCTTAAAAAGAAAAATTATGTACATATTTTTTTATAGTTCATCCTCTTGACAAAGCATTGTCATGTGAATCATTACTTAACAAAGAGCTAGCGTTAAATTCAACATGTGGTGGTAACTCTGTAGCCCCCTCAGTTATGATTTTTAATCTCTGTGATTGCAGTTGACTGTGCAAACAGTAACCAATATTCACACTCAACAACATCTCCACATCTAACCTTGTTTAGTTTTATACATCTATCTATTTTATTTCAAATTTGTTTTCTTACTCATTTCCAAAAAAGTGTATTCTGAAGTCTTTTAACTTCAAAATTGGATCTTTCAATAAAGGGAATTGTGTTACTCACTTTCATTACATTTACTTATATATGCAAGTATATTTGTTGAAATTACTTATAGTTTCTTAATTAATCCTAAGTTAGTTTTTGTTGGAACTGTTTTGCGTATAGTTTGAAATTGCTAGCTTAATTTTGACGCTCTTCTTTTCATAATTTTTAGTAGTTTACTTTATTACTTTTTATGTTCTGCTATCTTCTGGTTGTTATGATAACTTTAATTTGTTATTTATAGATATAGTAAAAATGTTTATATATTCTTAAAATTTTAAGAGTTTAATATATTTCTAAGATGGTTAAATAGATTTTTGTTCATTCAAATAACTGTTTAAGTCATAAAAATATTTTTTTAAAAAAATTAATTAGATATATTCGTAACATAATTTGTAAAAGTAATGAATTGAAAAAGATCTTCAAATTTTTGCCAATTTCTTTAAAGTTTAACAAAGAATCAACTGCAAAGTGTCTTCACAGTATAAAGGAAAAAAAAGAACGCAACAGGCAAATCCAACTTGCGGCCTTCCATTCTGTCTGTAAGGTCGACTAACAACGTCTCAAACAGAACTTGCTTGTGCAAAAACTTAGGTCTGCCACTGTAAATACATGCTATAGCTGTTCTGCAATGATGACTAGGATGTGCCAAAACTTATTAGAGAACCATTAGCAGTTGCAGCAGGCTTTTGGGTGCTTCATGGGGTATGAGGGTAGTATGGGCCACAGGCGAGCTGTGCTAGTGGCATTGAATTAGGTCATGAAGGAGGATGAGAAGAAATAAAATGTGGTAATGAGAGTCTACAGGGGTGGCTTCAGGTACTGGGAGGGTGACATGTTTAGTAGAGATGGAGAGTGGAGCTAACACTTGAGATAGTCGCCCTCTGAGGGGGCCGGGGGGTAGCTTCTCTTGAGATTTTTCTTGATTACCTTACAATCAAACTTTCTGGAAATATTTACATATATTTTAAGTTTTAGCACCAAAGTAATCTTGAATGTTCTTGAAGTGTACGGGCTAAAGTCTGGTTGAATGTTTTCGAATACAGTCTCGTCTTTATCCATGGTGACAATCCATGTTCACTGCATGTGGTATAAAGAACAAGCATACTTGTTTCTTGTTTGTTCATATATTTTACTTTTATTATGTGTCATGTTGTCTCTGCTGGGTGCTTCACTTATGGTACTTCAAGGATATTTCCTCGCAATCCTTTAGTAGGCATCTTTACGTGTACATATTCTCTTCTTTCTGGTTCTCTATTATCTTCTTTCAGAATATCTAGACAAAGGGGTTATTAGTTTAAAATTATTCAAGTAGTACGAAGTCACCTCAATTTTGTGTATGTGTCGTATCTTTTAGCATGTCAATGGTTTGAAGAATGCAGTGATGTGATAAATTTTCTTTATTCTTAACACTAATAGGCTTTTCAGGGAAGAATTCCTGAAGTGGCTTAATCTTAATCTCTGCCTTTTTGTCAGTTTTCTCATCTTACGAAATGATATTTTCTACTTTATGCTGTAAATGTTTGTATGATAAAATAGTAAACAATTTATATTAGCTAAGATTTATCTTGAATTCTAAATCTTTCAACTGTTTTCTGCCTATTGTAGTAGCATTTTTCTTTGTTTTTATTATTCTTGCCTTAAAAACAATTATTTCCCATTTGCATCTTAATGTTATGCTACTATATCTTTGTTATCTGATAATTGCGTCTCTCGTGCAGCTTGTGTTGCTGATGAAGATGACTAAAAGGCAGAAAGAAATTGAAAGAAATATTTTGAGACTTGTTGAAAATAGTTTGTTGTAATTTAAGCTTCACAGCTGTTGTGCTAATTCAGTTATTCTTCATCTGTCTAAAATTATATTAACCGTAGATTAGGAAATGATTTAGGTTTCATTTAATGGTAAATCTCAATGACTGCAAGTTTTGTATCGTGATAAAGAGGAAAGGCTCAAAATAGTCCATTATCTTTGGATTAA</genome_strand>
        <mrna_strand>AAATACCCACCCTTATTGTGATAGCGATAATCGAAAGAGAGAGAGATGCATCTATGGCCATCTATGAGATTAAGGGATTCTTTCAAATTGGGTTACTTGAAGAATCTTGAATGGAATCTCCATAGAATGAACAGTCAGAAGCAACGTGATAACGATCAGAAGCTTTTGGATGAGCCAACCACCAGTTCTAATAACGGTACTAGAGAAAAATTTGAGCTGTTTTGTAGAGAATTCCTCATGATCCTTTCTTGCTGCTACTGTTGTTTCTGCTGTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGTTGCTGATGAAGATGACTAAAAGGCAGAAAGAAATTGAAAGAAATATTTTGAGACTTGTTGAAAATAGTTTGTTGTAATTTAAGCTTCACAGCTGTTGTGCTAATTCAGTTATTCTTCATCTGTCTAAAATTATATTAACCGTAGATTAGGAAATGATTTAGGTTTCATTTAATGGTAAATCTCAATGACTGCAAGTTTTGTATCGTGATAAAGAGGAAAGGCTCAAAATAGTCCATTATCTTTGGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266927" ref_strand="-" ref_description="SGN-E266927 [cLEI-7-G18]">
      <seq>ccttattgtgatagcgataatcgaaagagagagagatgcatctatggccatctatgagattaagggattctttcaaattgggttacttgaagaatcttgaatggaatctccatagaatgaacagtcagaagcaacgtgataacgatcagaagcttttggatgagccaaccaccagttctaataacggtactagagaaaaatttgagctgttttgtagagaattcctcatgatcctttcttgctgctactgttgtttctgctgtggagcttgtgttgctgatgaagatgactaaaaggcagaaagaaattgaaagaaatattttgagacttgttgaaaatagtttgttgtaatttaagcttcacagctgttgtgctaattcagttattcttcatctgtctaaaattatattaaccgtagattaggaaatgatttaggtttcatttaatggtaaatctcaatgactgcaagttttgtatcgtgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="-" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="66467" stop="61655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66167" g_stop="65901" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65900" i_stop="62180" i_length="3721">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62179" g_stop="61955" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="492" r_length="225" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="-" ref_id="SGN-E266927" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266927" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66167" e_stop="65901"/>
          <exon e_start="62179" e_stop="61955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATTGTGATAGCGATAATCGAAAGAGAGAGAGATGCATCTATGGCCATCTATGAGATTAAGGGATTCTTTCAAATTGGGTTACTTGAAGAATCTTGAATGGAATCTCCATAGAATGAACAGTCAGAAGCAACGTGATAACGATCAGAAGCTTTTGGATGAGCCAACCACCAGTTCTAATAACGGTACTAGAGAAAAATTTGAGCTGTTTTGTAGAGAATTCCTCATGATCCTTTCTTGCTGCTACTGTTGTTTCTGCTGTGGAGGTACTTTTTGTTTCTGGGTTCATGCTTTCTTTGTTTGGATTTTCCTTTCTGTTTTTATAACATTTCCCAATTACCCAGATTTCAATCGATTCATTTGATTTGAGGAGTTATCTGGTGCGCTGCTAAAATAAAGATTTAAGGCATATGTGTTGTATCAACAAAGTAAAACAGAAAATAGATTTGAAGCTGTAACAGTTTCTGAGAGGCACTTAGTAACCAAACTTATGCAATCAAATTTATTCCCACATGGATCCTTTCTGAATTATTATTCTCGGATAGTTTGCCCATTTCCATCCCCATTGCATCGTTGTAAACCTGTTCATGGAAGATTTCTCACGCCTAATTTCCTCTAAACAAGTGAAAAGCTCACCTAGTCTAAGAAAATGGGGGTGTTTCAAGTAAGCTAAGCAACTGCTACACAATTTTGAGTTAGAACCATATACGCAGAAAGCAGGGAGGTAAATCCAAGTCAATTTTATCTAAAGATACTATTGTTTATCAAAGGTTGGGTTTATCATTCATTTCTTGACCGTTCAAATCTATAAATCTTCTCCCATTCTAGTGTTAAGCATACATTGGCACTCTGTGGTATTGTGTACTTTACAAGGGCCTCATTTACTTAAGTTTAATCATATAAGCTTTCAGTTCAAAATGTGGTAAAGTCCTTCACTCAAGGGAAGAGCATCATTCTGGACTAGAAATCAACCTTGTATGGTTGTGCCTCAATATACTGAGTCAGGAGGCCCCCCTTTACAAGTGCTATCCATGAAGCTTTGTAGTACAGGCACAAAAGAAAAGAAAATAATGTGTATATGTTTGCATTTATGTGTAGTTGATTTCCAAAGATTAGGGAATATACCTGCTGCTAGACATTGCTTTCACTTATATTTGCTCTATATTGCGTGAGTTCCACTTGTAGCATACAAATCAATGTTTACATAATCAGAAATAAGAATTAAAGTTGCAAAAGCTGCAGTAGGATCCTGTTTAACCTTTCAACAGAAAGTTGAAATAGATGAACGAACTACCATATACTATCTCTAGAGGCACAACCGCACAAGTTTTGTACTTTATAAGCTCATTTATCATTGAGCTCAAATTATGTAGAGCTACTGTAGGAAGTTCCTTCCAGGAAAACCAAATTCCTTAGTACACTATGAGCAAGGAGTATATCATTGAAACACAGACAAAAGGGAGACACTGCAAATTGTCAAGCCAGAATAAGTAATATTATTAGGATTGACACTGTAAAGAAACAAAAGTCATTACAAAATTATAGTAGCTTTTGCTAGAACTTATAGTGCAGTAGGCAAATATGATCCCGGTTTTTGTTTCCTTCTCTTTGGAGCTCTAGCAATGATCATGCTGTTTTAATGGCAGGGTTTGTATTCAAAATTTGATATAGTTTTGGTGGTCCTATTCAAATACTTTGATATCGTGTCGACGTGATTATTTGTTGTGCTCTACAGTCGGAAACTTTCTGGTGGATTTGAGATCAAAAGTGATGAAGTGTGAGGGAGAGGATCTAATTCAGAGTTTTACAATCAGTTTTAGTCTTGTTTTGATGATACTGGTGATTGACGATATAAGGGATCTGTTTAGGAGCATGTGTCCCAAGAGGGTTCACATGAATCCACTTGGTTGAAATTGTTTAATATTATTTTAGTTTATTTAATGCTTAAAAAGAAAAATTATGTACATATTTTTTTATAGTTCATCCTCTTGACAAAGCATTGTCATGTGAATCATTACTTAACAAAGAGCTAGCGTTAAATTCAACATGTGGTGGTAACTCTGTAGCCCCCTCAGTTATGATTTTTAATCTCTGTGATTGCAGTTGACTGTGCAAACAGTAACCAATATTCACACTCAACAACATCTCCACATCTAACCTTGTTTAGTTTTATACATCTATCTATTTTATTTCAAATTTGTTTTCTTACTCATTTCCAAAAAAGTGTATTCTGAAGTCTTTTAACTTCAAAATTGGATCTTTCAATAAAGGGAATTGTGTTACTCACTTTCATTACATTTACTTATATATGCAAGTATATTTGTTGAAATTACTTATAGTTTCTTAATTAATCCTAAGTTAGTTTTTGTTGGAACTGTTTTGCGTATAGTTTGAAATTGCTAGCTTAATTTTGACGCTCTTCTTTTCATAATTTTTAGTAGTTTACTTTATTACTTTTTATGTTCTGCTATCTTCTGGTTGTTATGATAACTTTAATTTGTTATTTATAGATATAGTAAAAATGTTTATATATTCTTAAAATTTTAAGAGTTTAATATATTTCTAAGATGGTTAAATAGATTTTTGTTCATTCAAATAACTGTTTAAGTCATAAAAATATTTTTTTAAAAAAATTAATTAGATATATTCGTAACATAATTTGTAAAAGTAATGAATTGAAAAAGATCTTCAAATTTTTGCCAATTTCTTTAAAGTTTAACAAAGAATCAACTGCAAAGTGTCTTCACAGTATAAAGGAAAAAAAAGAACGCAACAGGCAAATCCAACTTGCGGCCTTCCATTCTGTCTGTAAGGTCGACTAACAACGTCTCAAACAGAACTTGCTTGTGCAAAAACTTAGGTCTGCCACTGTAAATACATGCTATAGCTGTTCTGCAATGATGACTAGGATGTGCCAAAACTTATTAGAGAACCATTAGCAGTTGCAGCAGGCTTTTGGGTGCTTCATGGGGTATGAGGGTAGTATGGGCCACAGGCGAGCTGTGCTAGTGGCATTGAATTAGGTCATGAAGGAGGATGAGAAGAAATAAAATGTGGTAATGAGAGTCTACAGGGGTGGCTTCAGGTACTGGGAGGGTGACATGTTTAGTAGAGATGGAGAGTGGAGCTAACACTTGAGATAGTCGCCCTCTGAGGGGGCCGGGGGGTAGCTTCTCTTGAGATTTTTCTTGATTACCTTACAATCAAACTTTCTGGAAATATTTACATATATTTTAAGTTTTAGCACCAAAGTAATCTTGAATGTTCTTGAAGTGTACGGGCTAAAGTCTGGTTGAATGTTTTCGAATACAGTCTCGTCTTTATCCATGGTGACAATCCATGTTCACTGCATGTGGTATAAAGAACAAGCATACTTGTTTCTTGTTTGTTCATATATTTTACTTTTATTATGTGTCATGTTGTCTCTGCTGGGTGCTTCACTTATGGTACTTCAAGGATATTTCCTCGCAATCCTTTAGTAGGCATCTTTACGTGTACATATTCTCTTCTTTCTGGTTCTCTATTATCTTCTTTCAGAATATCTAGACAAAGGGGTTATTAGTTTAAAATTATTCAAGTAGTACGAAGTCACCTCAATTTTGTGTATGTGTCGTATCTTTTAGCATGTCAATGGTTTGAAGAATGCAGTGATGTGATAAATTTTCTTTATTCTTAACACTAATAGGCTTTTCAGGGAAGAATTCCTGAAGTGGCTTAATCTTAATCTCTGCCTTTTTGTCAGTTTTCTCATCTTACGAAATGATATTTTCTACTTTATGCTGTAAATGTTTGTATGATAAAATAGTAAACAATTTATATTAGCTAAGATTTATCTTGAATTCTAAATCTTTCAACTGTTTTCTGCCTATTGTAGTAGCATTTTTCTTTGTTTTTATTATTCTTGCCTTAAAAACAATTATTTCCCATTTGCATCTTAATGTTATGCTACTATATCTTTGTTATCTGATAATTGCGTCTCTCGTGCAGCTTGTGTTGCTGATGAAGATGACTAAAAGGCAGAAAGAAATTGAAAGAAATATTTTGAGACTTGTTGAAAATAGTTTGTTGTAATTTAAGCTTCACAGCTGTTGTGCTAATTCAGTTATTCTTCATCTGTCTAAAATTATATTAACCGTAGATTAGGAAATGATTTAGGTTTCATTTAATGGTAAATCTCAATGACTGCAAGTTTTGTATCGTGATAAAGAGGAA</genome_strand>
        <mrna_strand>CCTTATTGTGATAGCGATAATCGAAAGAGAGAGAGATGCATCTATGGCCATCTATGAGATTAAGGGATTCTTTCAAATTGGGTTACTTGAAGAATCTTGAATGGAATCTCCATAGAATGAACAGTCAGAAGCAACGTGATAACGATCAGAAGCTTTTGGATGAGCCAACCACCAGTTCTAATAACGGTACTAGAGAAAAATTTGAGCTGTTTTGTAGAGAATTCCTCATGATCCTTTCTTGCTGCTACTGTTGTTTCTGCTGTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGTTGCTGATGAAGATGACTAAAAGGCAGAAAGAAATTGAAAGAAATATTTTGAGACTTGTTGAAAATAGTTTGTTGTAATTTAAGCTTCACAGCTGTTGTGCTAATTCAGTTATTCTTCATCTGTCTAAAATTATATTAACCGTAGATTAGGAAATGATTTAGGTTTCATTTAATGGTAAATCTCAATGACTGCAAGTTTTGTATCGTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208613" ref_strand="+" ref_description="SGN-E208613 [cLEC-39-E19]">
      <seq>aagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtcataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggcgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="-" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="68156" stop="67257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67856" g_stop="67377" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="-" ref_id="SGN-E208613" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67856" e_stop="67377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACGGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGA-GAGTTTCTTGGTGATGAAACTCTATCTTGGTGTAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCATTTTCTCCCCGATAAAAGGACATCGAAATGGTGTTGAGCACATGATTGAATATCCTCGAAGGACCATAGTTATGGGTTTATTCTATCCCGAGGAATCCAAGACAAAATTGATTGGTTACGCAAATGTAGAATATTTA</genome_strand>
        <mrna_strand>AAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTCATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGCGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E289962" ref_strand="+" ref_description="SGN-E289962 [cLET-9-B10]">
      <seq>ttgaaagaaacttatccaataaagcttcaagaattcttatatggattgaaatagtcaaggaagaaaaatggtacaaaagaatgaccctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgccttgacctacagattgataatttgacaaatgaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatatgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="-" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="68232" stop="67225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67932" g_stop="67525" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="-" ref_id="SGN-E289962" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67932" e_stop="67525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACGGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGA-GAGTTTCTTGGTGATGAAACTCTATCTTGGTGTAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</genome_strand>
        <mrna_strand>TTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAATGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGCCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391540" ref_strand="+" ref_description="SGN-E391540 [TUS-16-I1]">
      <seq>acgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="-" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="68639" stop="67362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68339" g_stop="67662" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="-" ref_id="SGN-E391540" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68339" e_stop="67662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACTATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTATGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACGGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGAC</genome_strand>
        <mrna_strand>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267707" ref_strand="+" ref_description="SGN-E267707 [cLEI-12-K2]">
      <seq>ttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="-" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="68590" stop="67408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68290" g_stop="67708" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="-" ref_id="SGN-E267707" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68290" e_stop="67708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCAAGTAAAATGCACTATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTATGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACGGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</genome_strand>
        <mrna_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205808" ref_strand="+" ref_description="SGN-E205808 [cLEC-20-M21]">
      <seq>cgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="-" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="68637" stop="67484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68338" g_stop="67784" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="-" ref_id="SGN-E205808" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68338" e_stop="67784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACTATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTATGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</genome_strand>
        <mrna_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202657" ref_strand="+" ref_description="SGN-E202657 [cLEC-19-H1]">
      <seq>gatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttaaaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacgggttgcttcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgatttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="-" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="68634" stop="67581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68334" g_stop="67881" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="-" ref_id="SGN-E202657" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68334" e_stop="67881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACTATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTATGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAAT</genome_strand>
        <mrna_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAAAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGGTTGCTTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGATTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273497" ref_strand="+" ref_description="SGN-E273497 [cLEN-3-J16]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaatttatatcattgagcgctacctcatatcaaagataccgtcgacggttatttgatatcgattccaacaagacataacttatcgagatctcttcaatttttttcattatttcaggtacctgaacctttttcaagattttatgaagtgttatgtcaatgtgctcctttatagcacttgcctcattatcatgaccatattgatcatttgctccttccttctttaaggaattttatatttggaatcaattggtctattacgctttcggcgtatcataaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="67645" stop="68920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67945" g_stop="68620" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E273497" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67945" e_stop="68620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTTACATGCATTCAAGTTT-TCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCATAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATATCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATAGTGCATTTTACTTGGCCAACCATTTATCTGTCCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTC-A--TTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGAACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTTAAGGAATTTTATATTTGGAATCAATTGGTCTATTACGCTTTCGGCGTATCATAGACTCTG</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCA-TTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCAATTTTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTTAAGGAATTTTATATTTGGAATCAATTGGTCTATTACGCTTTCGGCGTATCATAAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273387" ref_strand="+" ref_description="SGN-E273387 [cLEN-3-J20]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="67645" stop="68647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67945" g_stop="68347" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E273387" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67945" e_stop="68347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTTACATGCATTCAAGTTT-TCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCATAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATATCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATAGTGCATTTTACTTGGCCAACCATTTATCTGTCCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCA-TTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338242" ref_strand="+" ref_description="SGN-E338242 [cTOE-13-M11]">
      <seq>taatattttctttcttttagaattttagtaagttcttttataacacgttatcagcacgagtctctagctaattgagagtgagttttagttttttctttaactcatgttttggttgatctcgatatgagaatcaaggtattatttgcataagatcaggtatgtattttctaaaatattttatgatttagaataaaatagtattcagtcactagcaattatcaggaaccgaagacatatactactattggttgaatatgacatgctatataaaacttattaaatggaagaaggtataaaattttaatagcatgagtttgaatgttattttgattgttttgaaagactcaaagggtgagtcgtgttgtacttcggtctattataccgttggtcaagggtaagacgattgattcaagtttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="-" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="71620" stop="70636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71320" g_stop="70936" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="421" r_length="386" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="-" ref_id="SGN-E338242" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71320" e_stop="70936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTACTTTTTT-TTT-ACTCATGTGTTGGTTGATCTCGTTATGAAGATCAAAGTATTATATGCATAAAATCAGGTATGTATTTTCTAGAATATTTTTATGATTTAGAATAAAATAGTATTCAGTCACTAACAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATACAAAATTTCTTAAATAGAAGAAGGTATAAAATTTTAATAGAATGAATTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGATGAGTCATGTTGTACTTCGATTTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCG</genome_strand>
        <mrna_strand>TTTTATAACACGTTATCAGCACGAGTCTCTAGCTAATTGAGAGTGAGTTTTAGTTTTTTCTTTAACTCATGTTTTGGTTGATCTCGATATGAGAATCAAGGTATTATTTGCATAAGATCAGGTATGTATTTTCTAAAATA-TTTTATGATTTAGAATAAAATAGTATTCAGTCACTAGCAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATATAAAACTTATTAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCGTGTTGTACTTCGGTCTATTATACCGTTGGTCAAGGGTAAGACGATTGATTCAAGTTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273518" ref_strand="+" ref_description="SGN-E273518 [cLEN-6-E15]">
      <seq>ggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="88492" stop="89683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88792" g_stop="89383" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="653" r_length="596" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E273518" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88792" e_stop="89383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTTTTAAGTTCGTT-AA---AATTAAGTTTGAGGTACAGCTATTTCTTTAACAGGTTTAATCCATTTTATCTTGGGAGAAATTAATCAATAACCTTGGGTACAGTGAGGGAATT--ATTTCTTAAGGACACACAACAGTTTCTGTGGAGTCGGACTAATTCTTGTATTTTAT-GTATTTTCTGCTTCATCTTATTTCTGTTTATGTTCGTTGGTTAACCTTATAAATAAAGGTTACTATAAGAATAACAATCTTAAG-AAATTTA-ATAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAATCTTTGTGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAATTTTATCGTTAAATCAAAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGC</genome_strand>
        <mrna_strand>TTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTG-T--TT-ATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263584" ref_strand="+" ref_description="SGN-E263584 [cLEG-60-L13]">
      <seq>tgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="88563" stop="89836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88834" g_stop="89536" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E263584" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88834" e_stop="89536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTGTTGTTGTTTTTAAGTTCGTT-AA---AATTAAGTTTGAGGTACAGCTATTTCTTTAACAGGTTTAATCCATTTTATCTTGGGAGAAATTAATCAATAACCTTGGGTACAGTGAGGGAATT--ATTTCTTAAGGACACACAACAGTTTCTGTGGAGTCGGACTAATTCTTGTATTTTAT-GTATTTTCTGCTTCATCTTATTTCTGTTTATGTTCGTTGGTTAACCTTATAAATAAAGGTTACTATAAGAATAACAATCTTAAG-AAATTTA-ATAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAATCTTTGTGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAATTTTATCGTTAAATCAAAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCGCCGGCTGAGAAACCTACAAAGTTTTCTAGAGTCAACTTTAAGAGATAACAGCTAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACG</genome_strand>
        <mrna_strand>TGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTG-T--TT-ATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261066" ref_strand="+" ref_description="SGN-E261066 [cLEG-65-C11]">
      <seq>tttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcataaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagatttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="88570" stop="89871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88870" g_stop="89543" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E261066" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88870" e_stop="89543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGTACAGCTATTTCTTTAACAGGTTTAATCCATTTTATCTTGGGAGAAATTAATCAATAACCTTGGGTACAGTGAGGGAATT--ATTTCTTAAGGACACACAACAGTTTCTGTGGAGTCGGACTAATTCTTGTATTTTAT-GTATTTTCTGCTTCATCTTATTTCTGTTTATGTTCGTTGGTTAACCTTATAAATAAAGGTTACTATAAGAATAACAATCTTAAG-AAATTTA-ATAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAATCTTTGTGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAATTTTATCGTTAAATCAAAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCGCCGGCTGAGAAACCTACAAAGTTTTCTAGAGTCAACTTTAAGAGATAACAGCTAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTG</genome_strand>
        <mrna_strand>TTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTG-T--TT-ATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCATAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGATTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E276669" ref_strand="+" ref_description="SGN-E276669 [cLEN-14-A16]">
      <seq>ttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="88571" stop="89805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88871" g_stop="89505" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E276669" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88871" e_stop="89505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGTACAGCTATTTCTTTAACAGGTTTAATCCATTTTATCTTGGGAGAAATTAATCAATAACCTTGGGTACAGTGAGGGAATT--ATTTCTTAAGGACACACAACAGTTTCTGTGGAGTCGGACTAATTCTTGTATTTTAT-GTATTTTCTGCTTCATCTTATTTCTGTTTATGTTCGTTGGTTAACCTTATAAATAAAGGTTACTATAAGAATAACAATCTTAAG-AAATTTA-ATAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAATCTTTGTGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAATTTTATCGTTAAATCAAAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCGCCGGCTGAGAAACCTACAAAGTTTTCTAGAGTCAACTTTAAGAGATAACAGCTAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTG</genome_strand>
        <mrna_strand>TTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTG-T--TT-ATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253427" ref_strand="+" ref_description="SGN-E253427 [cLEG-24-L5]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctggttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="88724" stop="89893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88985" g_stop="89593" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E253427" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88985" e_stop="89593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTCGGACTAATTCTTGTATTTTATGT-ATTTTCTGCTTCATCTTATTTCTGTTTATGTTCGTTGGTTAACCTTATAAATAAAGGTTACTATAAGAATAACAATCTTAAG-AAATTTA-ATAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAATCTTTGTGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAATTTTATCGTTAAATCAAAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCGCCGGCTGAGAAACCTACAAAGTTTTCTAGAGTCAACTTTAAGAGATAACAGCTAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGT---A-AAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTG---GTT-ATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262550" ref_strand="+" ref_description="SGN-E262550 [cLEG-63-C22]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctgggacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaactgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaattatattttgagtggtctgcaagatgatctgtancatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaacagaagatgccggaaatgagaaaatcattgtgggcaaatttctagacttttagatgatagacagtaagactgtcgtcacccaagtttcagaattgcaggttataatccatgatctccttgctgaaaggatgattgtgaatgatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="88801" stop="90124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89100" g_stop="89824" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E262550" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89100" e_stop="89824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAATCTTTGTGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAATTTTATCGTTAAATCAAAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCGCCGGCTGAGAAACCTACAAAGTTTTCTAGAGTCAACTTTAAGAGATAACAGCTAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGT---A-AAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATATGTACAACAATGCCAAAACCTCAAAAGAACTCTGGGATGCTTTA-AAAA-AAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAGAATTTCTGGACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGACATAATCCACGATCTCCATGCTGAAGGATTGATTGTGAATGATGCTTT</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAA-CTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGT-AAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTANCATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTAC-AAACAGAAGATGCCGGAAATGAGAAAATCATTGTGGGCAAATTTCTAGACTTTTAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTTCAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAAGGATGATTGTGAATGATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258047" ref_strand="+" ref_description="SGN-E258047 [cLEG-48-K15]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="88801" stop="89843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89100" g_stop="89543" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E258047" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89100" e_stop="89543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAATCTTTGTGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAATTTTATCGTTAAATCAAAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCGCCGGCTGAGAAACCTACAAAGTTTTCTAGAGTCAACTTTAAGAGATAACAGCTAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTG</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261540" ref_strand="+" ref_description="SGN-E261540 [cLEG-57-K8]">
      <seq>taaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctcctattgtggaaggactttaaaaactacttgaaacacaaacgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="88834" stop="90199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89134" g_stop="89899" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E261540" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89134" e_stop="89899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCTTTGTGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAATTTTATCGTTAAATCAAAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCGCCGGCTGAGAAACCTACAAAGTTTTCTAGAGTCAACTTTAAGAGATAACAGCTAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGT---A-AAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATATGTACAACAATGCCAAAACCTCAAAAGAACTCTGGGATGCTTTA-AAAA-AAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAGAATTTCTGGACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGACATAATCCACGATCTCCATGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTTAAAAGTTATCTCC-ATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAATGCAA</genome_strand>
        <mrna_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251204" ref_strand="+" ref_description="SGN-E251204 [cLEG-10-L14]">
      <seq>tcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="89013" stop="90214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89313" g_stop="89914" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E251204" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89313" e_stop="89914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCGCCGGCTGAGAAACCTACAAAGTTTTCTAGAGTCAACTTTAAGAGATAACAGCTAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGT---A-AAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATATGTACAACAATGCCAAAACCTCAAAAGAACTCTGGGATGCTTTA-AAAA-AAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAGAATTTCTGGACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGACATAATCCACGATCTCCATGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTTAAAAGTTATCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAATGCAAGGAGATGACTGTTAA</genome_strand>
        <mrna_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369759" ref_strand="+" ref_description="SGN-E369759 [TUS-25-O3](-)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="89626" stop="90930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89926" g_stop="90630" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E369759" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89926" e_stop="90630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAG-AAA-A-GTCACGTGGTAATTCAGCAATATCTGAAGTAAATTTTATTGAAGAAGATCCTACAAAATTAAAGAAAAGAAAGAAAGCATCTGATAAAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAATTGCTTTAATTGTGGTAAAAATGGTCATATAGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGAAAACTTGGCTGAATCCAAATTAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATTCAAGAGAATGGTGGATAGATTCTGATGCCTCATACCATGTTTGTTCCAACAAAGAATTATTTTCATCATATACTCCAACACTTACAAATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCTAGCTCTAACTAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAATGCTACCTTAGTGATGGCCTTTTCAAACTC-ATGTAATTGCAGTTGATATGAATAAAGATTTTGCCTCTTCTTA</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395006" ref_strand="-" ref_description="SGN-E395006 [TUS-34-O4]">
      <seq>aagaaattcaatggaaactgctttaattgtggtaaacatggtcataggggtaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttctttttaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="89772" stop="90930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90072" g_stop="90630" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="581"/>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E395006" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395006" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90072" e_stop="90630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATTCAATGGAAATTGCTTTAATTGTGGTAAAAATGGTCATATAGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGAAAACTTGGCTGAATCCAAATTAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATTCAAGAGAATGGTGGATAGATTCTGATGCCTCATACCATGTTTGTTCCAACAAAGAATTATTTTCATCATATACTCCAACACTTACAAATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCTAGCTCTAACTAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAATGCTACCTTAGTGATGGCCTTTTCAAACTC-ATGTAATTGCAGTTGATATGAATAAAGATTTTGCCTCTTCTTA</genome_strand>
        <mrna_strand>AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGGTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250407" ref_strand="-" ref_description="SGN-E250407 [cLEG-6-H3]">
      <seq>aattgtggtaaacatggtcatagggctaatgaaagccggggtcttaagaaggacaagataaagaaggatcaagcaaacttgggtgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcagttacagatgagaaattatttatggccaactccgctgttgcaaaggtgtaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttcatatgaataaagattttgcttcttattaaaaaaaaaaaaaaaaaaagactcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="89796" stop="90930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90096" g_stop="90630" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="556"/>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E250407" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250407" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90096" e_stop="90630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTGGTAAAAATGGTCATATAGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGAAAACTTGGCTGAATCCAAATTAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATTCAAGAGAATGGTGGATAGATTCTGATGCCTCATACCATGTTTGTTCCAACAAAGAATTATTTTCATCATATACTCCAACACTTACAAATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCTAGCTCTAACTAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAATGCTACCTTAGTGATGGCCTTTTCAAACTC-ATGTAATTGCAGTTGATATGAATAAAGATTTTGCCTCTTCTTA</genome_strand>
        <mrna_strand>AATTGTGGTAAACATGGTCATAGGGCTAATGAAAGCCGGGGTCTTAAGAAGGACAAGATAAAGAAGGATCAAGCAAACTTGGGTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCAGTTACAGATGAGAAATTATTTATGGCCAACTCCGCTGTTGCAAAGGTGTAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTCATATGAATAAAGATTTTGCTTCTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375520" ref_strand="+" ref_description="SGN-E375520 [TUS-34-B10](-)">
      <seq>atgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattttggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactttagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtttcatatgttccagaattgagaaataatttagtttcaattccaattttgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttttttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="89828" stop="90930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90128" g_stop="90619" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="524"/>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E375520" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90128" e_stop="90619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGAAAACTTGGCTGAATCCAAATTAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATTCAAGAGAATGGTGGATAGATTCTGATGCCTCATACCATGTTTGTTCCAACAAAGAATTATTTTCATCATATACTCCAACACTTACAAATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCTAGCTCTAACTAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAATGCTACCTTAGTGATGGCCTTTTCAAACTC-ATGTAATTGCAGTTGATATGAATAAAGATTTT</genome_strand>
        <mrna_strand>ATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTTTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTTTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTTTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="94065" stop="94890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94363" g_stop="94590" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94363" e_stop="94590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACACGTTCCTTGCTGAAAATGGCTATAAAAGAAAGTCAATTTTTGATTTTTTCAAACACCGAAAA-TTTTCCTTCTCTGCATTCATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTAGTTGATGTTAAAGAAGTTTGAGGTACCGCTATTTTCTTTAACGGGTTTAATCCATTTTATCTTGGGAAAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTT-AAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTA-TTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="94073" stop="95017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94373" g_stop="94756" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94373" e_stop="94756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTATAAAAGAAAGTCAATTTTTGATTTTTTCAAACACCGAAAA-TTTTCCTTCTCTGCATTCATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTAGTTGATGTTAAAGAAGTTTGAGGTACCGCTATTTTCTTTAACGGGTTTAATCCATTTTATCTTGGGAAAAATTAATTCATAACCTTGAGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGATTCGGATTAATTCTTGTATTTTAT-GTATTTTCTGCTTCATCTTATTTCTGTTTTTGTTCATTGGTTAACCTTATAAATAAATGTTACTATAAGAATAACAA</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTT-AAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTA-TTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTG-T--TT-ATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363240" ref_strand="+" ref_description="SGN-E363240 [cLPP-19-L16]">
      <seq>agagagagagaatatgggtcccttagtgataggtggaagtgcttgcccctcccccagccacagccaagcatctacatcacaggaaatgtcaagtgagcctcaagcgaattctggattaagcatcaaaagtgtttcacaagaaaaacaatcaggatcaggggatgaataatttaagttaaccagtacgtaaataattgagagtagcaactaaagttgtttgctattcttgtgttgtatatagaaggatagatagctcgggcctggatgccgctgaagcttatcacagcatactgtgattttgttgtatattatgttcaattttgggttagattccatgggcagatagttgttaaactcaattgatttgagagtggtaaaataatgtattggcattgtaacttgtaaatagtcttttaaccttatgattccaagtgaacagtgagcccaagacatctgcataacagttgtaggggatgttcacttttcattgagttggaaacaataataatatattggagtcattttttggtgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="103351" stop="104735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103647" g_stop="103728" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103729" i_stop="103916" i_length="188">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103917" g_stop="103986" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="152" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103987" i_stop="104051" i_length="65">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104052" g_stop="104432" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="533" r_length="381" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="545"/>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-E363240" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103647" e_stop="103728"/>
          <exon e_start="103917" e_stop="103986"/>
          <exon e_start="104052" e_stop="104432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGAAGAAAATATGGGTCCCTTAGTGATAGGTGGAAGTGCTTGCCCCTCCCCCAGCCACAGCCAAGCATCTACATCACAGGCAAGCTGTTGAATCAATAAGTTCTTCTATATATTATTGTTAATTCTAGTTAGAAAATGAAACTATATATCCAGTAGCACGTGACATATTAACATTCGTTAAGGATATATCTATATATGTATATGTATATTGCTAGTGATTTGTGACAAAGCAAGTAAGTTGTAATACATTATGAGCATGGTTAGCAGGAAATGTCAAGTGAGCCTCAAGCGAATTCTGGATTAAGCATCAAAAGTGTTTCACAAGAAAAACAATCAGGTACTTAAATGTTGTATATTTATTTATTCTTTTGTAAGTGGAGCTGACCCCTCTATAATCTGCAGGATCAGGGGATGAATAATTTAAGTTAACCAGTACGTAAATAATTGAGAGTAGCAACTATAGTTGTTTGCTATTCTTGTGTTGTATATAGAAGGATAGATAGCTCGGGCCTGGATGCCGCTGAAGCTTATCACAGCATACTGTGATTTTGTTGTATATTATGTTCAATTTTGGGTTAGATTCCATGGGCAGATAGTTGTTAAACTCAATTGATTTGAGAGTGGTAAAATAATGTATTGGCATTGTAACTTGTAAATAGTCTTTTAACCTTATGATTCCAAGTGAACAGTGAGCCCTAGACATCTGCATAACAGTTGTAGTGGATGTTCACTTTTCATTGAGTTGTAAACAATAATAATATATTGGAGTCATTTTTTGGTGAA</genome_strand>
        <mrna_strand>AGAGAGAGAGAATATGGGTCCCTTAGTGATAGGTGGAAGTGCTTGCCCCTCCCCCAGCCACAGCCAAGCATCTACATCACAG............................................................................................................................................................................................GAAATGTCAAGTGAGCCTCAAGCGAATTCTGGATTAAGCATCAAAAGTGTTTCACAAGAAAAACAATCAG.................................................................GATCAGGGGATGAATAATTTAAGTTAACCAGTACGTAAATAATTGAGAGTAGCAACTAAAGTTGTTTGCTATTCTTGTGTTGTATATAGAAGGATAGATAGCTCGGGCCTGGATGCCGCTGAAGCTTATCACAGCATACTGTGATTTTGTTGTATATTATGTTCAATTTTGGGTTAGATTCCATGGGCAGATAGTTGTTAAACTCAATTGATTTGAGAGTGGTAAAATAATGTATTGGCATTGTAACTTGTAAATAGTCTTTTAACCTTATGATTCCAAGTGAACAGTGAGCCCAAGACATCTGCATAACAGTTGTAGGGGATGTTCACTTTTCATTGAGTTGGAAACAATAATAATATATTGGAGTCATTTTTTGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>30</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="19642" PGL_stop="20043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19642" e_stop="20043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="19642" e_stop="20043" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19642" stop="20043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATATGCTTAATTGTATGCAAGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTGATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGATATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAAGGAGATTTAGGGGATCGAGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACG</gDNA_template>
            <first_frame> K  S  S  V  E  V  G  Y  G  F  H  A  F  I  V  N  S  *  *  R  M  I  C  I  G  S  I  V  N  P  A  I  C  L  I  V  C  K  H  E  R  D  Y  I  I  V  I  I  L  S  M  M  K  *  L  N  P  K  S  *  *  K  P  N  L  F  L  M  M  M  P  W  *  G  R  R  L  D  E  L  K  *  *  Y  *  *  C  L  G  K  K  E  G  L  M  N  *  W  K  E  I  *  G  I  E  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  F  M  L  S  *  *  T  L  N  R  E  *  Y  V  L  V  V  L  *  T  L  L  Y  A  *  L  Y  A  S  M  N  V  I  I  *  L  *  L  Y  *  A  *  *  S  D  *  I  P  N  L  D  K  N  L  I  S  F  *  *  *  C  L  G  K  G  E  G  L  M  N  *  S  N  D  I  D  D  A  L  V  R  K  K  A  *  *  I  D  G  R  R  F  R  G  S  S  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T   </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  S  C  F  H  S  K  L  L  I  E  N  D  M  Y  W  *  Y  C  K  P  C  Y  M  L  N  C  M  Q  A  *  T  *  L  Y  N  C  D  Y  I  K  H  D  E  V  I  E  S  Q  I  L  I  K  T  *  S  L  F  N  D  D  A  L  V  R  E  K  A  *  *  T  K  V  M  I  L  M  M  P  W  *  E  R  R  L  D  E  L  M  E  G  D  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0120F05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="20693" PGL_stop="20134"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20693" e_stop="20255"/>
            <exon e_start="20172" e_stop="20134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.347" acc_prob="0.000" e_score="0.959"/>
          <exon-only e_score="0.872"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="20693" e_stop="20255" e_length="439"/>
          </exon>
          <intron i_serial="1" don_prob="0.347" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20254" i_stop="20173" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.872">
            <gDNA_exon_boundary e_start="20172" e_stop="20134" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20693" stop="20255"/>
              <exon start="20172" stop="20135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20452" stop="20255"/>
              <exon start="20172" stop="20134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGCAAGACTGACTTGAATTACTGTTGAGTTGAAGACGATGGCACGTTTGCTGCAATCAACAATTAAACAAGAAGAGAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAGTTACCGTCCATTTCACACATGAGGACTCAAGCCTCGATACCATACTCATTTGGGAATCATATTCATTAAATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTAC : GTGACACCCGATCCCCTAAATCTACATGTCAGTTCGTGA</gDNA_template>
            <first_frame> S  P  S  *  K  H  *  L  T  L  N  F  R  C  S  K  T  D  L  N  Y  C  *  V  E  D  D  G  T  F  A  A  I  N  N  *  T  R  R  E  H  K  S  R  G  Q  Y  K  T  R  V  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  H  *  Q  L  P  S  I  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  I  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V   : R  D  T  R  S  P  K  S  T  C  Q  F  V  </first_frame>
            <second_frame>  V  Q  A  R  S  I  S  S  P  *  I  S  D  V  A  R  L  T  *  I  T  V  E  L  K  T  M  A  R  L  L  Q  S  T  I  K  Q  E  E  N  I  K  V  G  V  S  T  K  H  G  Y  *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  S  Y  R  P  F  H  T  *  G  L  K  P  R  Y  H  T  H  L  G  I  I  F  I  K  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  :  V  T  P  D  P  L  N  L  H  V  S  S  * </second_frame>
            <third_frame>   S  K  L  E  A  L  A  H  P  E  F  P  M  *  Q  D  *  L  E  L  L  L  S  *  R  R  W  H  V  C  C  N  Q  Q  L  N  K  K  R  T  *  K  *  G  S  V  Q  N  T  G  T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  N  T  I  S  L  T  V  T  V  H  F  T  H  E  D  S  S  L  D  T  I  L  I  W  E  S  Y  S  L  N  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T :   *  H  P  I  P  *  I  Y  M  S  V  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0120F05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="66177" PGL_stop="61923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66177" e_stop="65901"/>
            <exon e_start="62179" e_stop="61923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66177" e_stop="65901" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65900" i_stop="62180" i_length="3721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62179" e_stop="61923" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66177" stop="65901"/>
              <exon start="62179" stop="61923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66167" stop="65901"/>
              <exon start="62179" stop="61955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266927" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATACCCACCCTTATTGTGATAGCGATAATCGAAAGAGAGAGAGATGCATCTATGGCCATCTATGAGATTAAGGGATTCTTTCAAATTGGGTTACTTGAAGAATCTTGAATGGAATCTCCATAGAATGAACAGTCAGAAGCAACGTGATAACGATCAGAAGCTTTTGGATGAGCCAACCACCAGTTCTAATAACGGTACTAGAGAAAAATTTGAGCTGTTTTGTAGAGAATTCCTCATGATCCTTTCTTGCTGCTACTGTTGTTTCTGCTGTGGAG : CTTGTGTTGCTGATGAAGATGACTAAAAGGCAGAAAGAAATTGAAAGAAATATTTTGAGACTTGTTGAAAATAGTTTGTTGTAATTTAAGCTTCACAGCTGTTGTGCTAATTCAGTTATTCTTCATCTGTCTAAAATTATATTAACCGTAGATTAGGAAATGATTTAGGTTTCATTTAATGGTAAATCTCAATGACTGCAAGTTTTGTATCGTGATAAAGAGGAAAGGCTCAAAATAGTCCATTATCTTTGGATTAA</gDNA_template>
            <first_frame> K  Y  P  P  L  L  *  *  R  *  S  K  E  R  E  M  H  L  W  P  S  M  R  L  R  D  S  F  K  L  G  Y  L  K  N  L  E  W  N  L  H  R  M  N  S  Q  K  Q  R  D  N  D  Q  K  L  L  D  E  P  T  T  S  S  N  N  G  T  R  E  K  F  E  L  F  C  R  E  F  L  M  I  L  S  C  C  Y  C  C  F  C  C  G   : A  C  V  A  D  E  D  D  *  K  A  E  R  N  *  K  K  Y  F  E  T  C  *  K  *  F  V  V  I  *  A  S  Q  L  L  C  *  F  S  Y  S  S  S  V  *  N  Y  I  N  R  R  L  G  N  D  L  G  F  I  *  W  *  I  S  M  T  A  S  F  V  S  *  *  R  G  K  A  Q  N  S  P  L  S  L  D  * </first_frame>
            <second_frame>  N  T  H  P  Y  C  D  S  D  N  R  K  R  E  R  C  I  Y  G  H  L  *  D  *  G  I  L  S  N  W  V  T  *  R  I  L  N  G  I  S  I  E  *  T  V  R  S  N  V  I  T  I  R  S  F  W  M  S  Q  P  P  V  L  I  T  V  L  E  K  N  L  S  C  F  V  E  N  S  S  *  S  F  L  A  A  T  V  V  S  A  V  E  :  L  V  L  L  M  K  M  T  K  R  Q  K  E  I  E  R  N  I  L  R  L  V  E  N  S  L  L  *  F  K  L  H  S  C  C  A  N  S  V  I  L  H  L  S  K  I  I  L  T  V  D  *  E  M  I  *  V  S  F  N  G  K  S  Q  *  L  Q  V  L  Y  R  D  K  E  E  R  L  K  I  V  H  Y  L  W  I   </second_frame>
            <third_frame>   I  P  T  L  I  V  I  A  I  I  E  R  E  R  D  A  S  M  A  I  Y  E  I  K  G  F  F  Q  I  G  L  L  E  E  S  *  M  E  S  P  *  N  E  Q  S  E  A  T  *  *  R  S  E  A  F  G  *  A  N  H  Q  F  *  *  R  Y  *  R  K  I  *  A  V  L  *  R  I  P  H  D  P  F  L  L  L  L  L  F  L  L  W  S :   L  C  C  *  *  R  *  L  K  G  R  K  K  L  K  E  I  F  *  D  L  L  K  I  V  C  C  N  L  S  F  T  A  V  V  L  I  Q  L  F  F  I  C  L  K  L  Y  *  P  *  I  R  K  *  F  R  F  H  L  M  V  N  L  N  D  C  K  F  C  I  V  I  K  R  K  G  S  K  *  S  I  I  F  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0120F05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66147" stop="65901"/>
                    <exon start="62179" stop="62154"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKEREMHLWPSMRLRDSFKLGYLKNLEWNLHRMNSQKQRDNDQKLLDEPTTSSNNGTREKFELFCREFLMILSCCYCCFCCGACVADEDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="68339" PGL_stop="67377"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68339" e_stop="67377"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="68339" e_stop="67377" e_length="963"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68339" stop="67662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68338" stop="67784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68334" stop="67881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68290" stop="67708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67932" stop="67525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67856" stop="67377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACTATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTATGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAACTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACGGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGTAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCATTTTCTCCCCGATAAAAGGACATCGAAATGGTGTTGAGCACATGATTGAATATCCTCGAAGGACCATAGTTATGGGTTTATTCTATCCCGAGGAATCCAAGACAAAATTGATTGGTTACGCAAATGTAGAATATTTA</gDNA_template>
            <first_frame> M  R  I  L  N  S  N  L  S  Y  S  V  D  R  *  M  V  G  Q  V  K  C  T  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  G  S  P  *  I  K  I  *  C  Q  W  G  T  N  K  L  L  C  D  S  I  T  V  R  Y  Q  I  R  F  M  P  W  G  I  K  V  Y  R  K  N  P  D  I  S  G  D  V  F  S  F  G  G  *  N  E  V  C  F  D  L  A  T  Y  E  N  L  N  A  C  K  *  I  I  V  M  S  S  *  T  M  K  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  V  *  K  K  L  I  Q  *  S  F  K  N  S  Y  M  D  *  N  S  Q  G  R  K  R  V  Q  K  N  D  P  N  C  P  C  I  F  M  K  R  S  W  *  D  K  I  L  S  *  P  T  D  C  *  F  D  K  *  N  I  C  L  T  V  H  I  H  *  K  I  L  M  Q  F  Y  V  D  I  S  H  S  L  S  T  P  M  I  M  R  S  L  D  I  N  D  D  S  V  *  S  Q  K  K  D  E  S  F  L  V  M  K  L  Y  L  G  V  I  R  A  L  V  H  L  T  N  N  I  I  P  D  I  C  F  A  V  N  L  L  A  R  F  I  F  S  P  I  K  G  H  R  N  G  V  E  H  M  I  E  Y  P  R  R  T  I  V  M  G  L  F  Y  P  E  E  S  K  T  K  L  I  G  Y  A  N  V  E  Y  L </first_frame>
            <second_frame>  *  G  S  *  I  Q  I  C  H  I  V  W  T  D  K  W  L  A  K  *  N  A  L  F  K  Y  I  L  F  H  L  E  K  *  H  F  G  L  V  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  Y  Y  A  I  V  *  P  *  D  I  K  Y  G  L  C  L  G  A  *  R  F  I  A  K  I  L  T  L  V  E  M  F  S  P  L  V  D  E  M  R  F  V  L  I  W  Q  H  M  K  T  *  M  H  V  N  E  *  L  *  C  L  A  R  Q  *  R  L  Y  E  N  P  *  N  N  R  G  V  *  S  I  *  E  F  E  R  N  L  S  N  K  A  S  R  I  L  I  W  I  E  I  V  K  E  E  K  G  Y  K  R  M  T  L  I  V  L  V  F  L  *  K  G  L  G  K  T  K  F  C  L  D  L  Q  I  V  N  L  T  N  K  I  F  V  *  R  C  T  Y  T  E  K  F  *  C  N  F  M  W  I  Y  R  I  H  *  V  P  Q  *  L  *  D  H  L  T  *  M  M  I  Q  F  D  L  K  R  R  M  R  V  S  W  *  *  N  S  I  L  V  *  S  G  H  *  C  I  L  L  T  I  L  F  Q  I  F  V  L  Q  *  I  Y  W  Q  D  S  F  S  P  R  *  K  D  I  E  M  V  L  S  T  *  L  N  I  L  E  G  P  *  L  W  V  Y  S  I  P  R  N  P  R  Q  N  *  L  V  T  Q  M  *  N  I   </second_frame>
            <third_frame>   E  D  L  E  F  K  S  V  I  *  C  G  Q  I  N  G  W  P  S  K  M  H  Y  S  S  I  F  C  F  T  *  K  S  D  I  L  D  W  *  S  I  N  Q  D  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  R  K  I  S  N  T  V  Y  A  L  G  H  K  G  L  S  Q  K  S  *  H  *  W  R  C  F  L  L  W  W  M  K  *  G  L  F  *  S  G  N  I  *  K  L  E  C  M  *  M  N  N  C  N  V  *  L  D  N  E  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  K  E  T  Y  P  I  K  L  Q  E  F  L  Y  G  L  K  *  S  R  K  K  K  G  T  K  E  *  P  *  L  S  L  Y  F  Y  E  K  V  L  V  R  Q  N  F  V  L  T  Y  R  L  L  I  *  Q  I  K  Y  L  S  N  G  A  H  T  L  K  N  F  D  A  I  L  C  G  Y  I  A  F  I  E  Y  P  N  D  Y  E  I  T  *  H  K  *  *  F  S  L  I  S  K  E  G  *  E  F  L  G  D  E  T  L  S  W  C  N  Q  G  T  S  A  S  Y  *  Q  Y  Y  S  R  Y  L  F  C  S  K  F  T  G  K  I  H  F  L  P  D  K  R  T  S  K  W  C  *  A  H  D  *  I  S  S  K  D  H  S  Y  G  F  I  L  S  R  G  I  Q  D  K  I  D  W  L  R  K  C  R  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0120F05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67640" stop="67377"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQKKDESFLVMKLYLGVIRALVHLTNNIIPDICFAVNLLARFIFSPIKGHRNGVEHMIEYPRRTIVMGLFYPEESKTKLIGYANVEYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="67945" PGL_stop="68620"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67945" e_stop="68620"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="67945" e_stop="68620" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67945" stop="68620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67945" stop="68347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTTACATGCATTCAAGTTTTCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCATAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATATCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATAGTGCATTTTACTTGGCCAACCATTTATCTGTCCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCATTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGAACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTTAAGGAATTTTATATTTGGAATCAATTGGTCTATTACGCTTTCGGCGTATCATAGACTCTG</gDNA_template>
            <first_frame> F  R  H  L  D  C  F  K  D  F  H  I  T  F  I  V  *  L  D  I  T  I  I  H  L  H  A  F  K  F  S  Y  V  A  R  S  K  Q  T  S  F  H  P  P  K  E  K  T  S  P  L  M  S  G  F  L  R  *  T  F  M  P  Q  G  I  N  R  I  *  Y  L  T  V  I  L  S  H  N  N  L  F  V  P  H  *  H  Y  I  L  I  Y  G  L  P  V  Q  N  V  T  F  L  S  E  T  K  Y  T  *  I  V  H  F  T  W  P  T  I  Y  L  S  T  L  Y  D  R  F  E  F  K  I  L  I  T  I  Y  I  I  E  R  Y  L  I  S  K  I  P  S  T  V  I  *  Y  R  F  Q  Q  D  I  T  Y  R  D  L  F  I  F  H  Y  F  R  Y  L  N  L  F  Q  D  F  M  K  C  Y  V  N  V  L  F  Y  R  T  C  L  I  I  M  T  I  L  I  I  C  S  F  L  L  *  G  I  L  Y  L  E  S  I  G  L  L  R  F  R  R  I  I  D  S  </first_frame>
            <second_frame>  S  D  T  S  I  V  S  R  I  F  I  *  P  S  L  S  S  *  T  L  Q  L  F  I  Y  M  H  S  S  F  H  M  L  P  D  Q  N  K  P  H  F  I  H  Q  R  R  K  H  L  H  *  C  Q  D  F  C  D  K  P  L  C  P  K  A  *  T  V  F  D  I  L  R  L  Y  Y  R  I  I  I  Y  L  Y  P  T  D  I  I  S  *  F  M  D  Y  Q  S  K  M  S  L  F  *  V  K  Q  N  I  L  E  *  C  I  L  L  G  Q  P  F  I  C  P  H  Y  M  T  D  L  N  S  R  S  S  S  Q  F  I  S  L  S  A  T  S  Y  Q  R  Y  R  R  R  L  F  D  I  D  S  N  K  T  *  L  I  E  I  S  S  F  F  I  I  S  G  T  *  T  F  F  K  I  L  *  S  V  M  S  M  C  S  F  I  E  L  A  S  L  S  *  P  Y  *  S  F  A  P  S  F  F  K  E  F  Y  I  W  N  Q  L  V  Y  Y  A  F  G  V  S  *  T  L </second_frame>
            <third_frame>   Q  T  P  R  L  F  Q  G  F  S  Y  N  L  H  C  L  A  R  H  Y  N  Y  S  F  T  C  I  Q  V  F  I  C  C  Q  I  K  T  N  L  I  S  S  T  K  G  E  N  I  S  T  N  V  R  I  F  A  I  N  L  Y  A  P  R  H  K  P  Y  L  I  S  Y  G  Y  T  I  A  *  *  F  I  C  T  P  L  T  L  Y  L  D  L  W  T  T  S  P  K  C  H  F  S  K  *  N  K  I  Y  L  N  S  A  F  Y  L  A  N  H  L  S  V  H  T  I  *  Q  I  *  I  Q  D  P  H  H  N  L  Y  H  *  A  L  P  H  I  K  D  T  V  D  G  Y  L  I  S  I  P  T  R  H  N  L  S  R  S  L  H  F  S  L  F  Q  V  P  E  P  F  S  R  F  Y  E  V  L  C  Q  C  A  L  L  *  N  L  P  H  Y  H  D  H  I  D  H  L  L  L  P  S  L  R  N  F  I  F  G  I  N  W  S  I  T  L  S  A  Y  H  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0120F05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67947" stop="68177"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTPRLFQGFSYNLHCLARHYNYSFTCIQVFICCQIKTNLISSTKGENISTNVRIFAINLYAPRHKPYLISYGYTIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="71320" PGL_stop="70936"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71320" e_stop="70936"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="71320" e_stop="70936" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71320" stop="70936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTACTTTTTTTTTACTCATGTGTTGGTTGATCTCGTTATGAAGATCAAAGTATTATATGCATAAAATCAGGTATGTATTTTCTAGAATATTTTTATGATTTAGAATAAAATAGTATTCAGTCACTAACAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATACAAAATTTCTTAAATAGAAGAAGGTATAAAATTTTAATAGAATGAATTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGATGAGTCATGTTGTACTTCGATTTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCG</gDNA_template>
            <first_frame> F  Y  N  T  L  S  A  R  V  S  S  Q  L  R  L  S  F  T  F  F  L  L  M  C  W  L  I  S  L  *  R  S  K  Y  Y  M  H  K  I  R  Y  V  F  S  R  I  F  L  *  F  R  I  K  *  Y  S  V  T  N  N  Y  Q  E  P  K  T  Y  T  T  I  G  *  I  *  H  A  I  Q  N  F  L  N  R  R  R  Y  K  I  L  I  E  *  I  *  M  L  F  *  L  F  *  K  T  Q  R  M  S  H  V  V  L  R  F  I  I  P  L  V  K  G  K  T  M  N  S  S  F  I  </first_frame>
            <second_frame>  F  I  T  R  Y  Q  H  E  S  L  A  N  *  D  *  V  L  L  F  F  Y  S  C  V  G  *  S  R  Y  E  D  Q  S  I  I  C  I  K  S  G  M  Y  F  L  E  Y  F  Y  D  L  E  *  N  S  I  Q  S  L  T  I  I  R  N  R  R  H  I  L  L  L  V  E  Y  D  M  L  Y  K  I  S  *  I  E  E  G  I  K  F  *  *  N  E  F  E  C  Y  F  D  C  F  E  R  L  K  G  *  V  M  L  Y  F  D  L  L  Y  R  W  L  R  V  R  R  *  I  Q  V  S  S </second_frame>
            <third_frame>   L  *  H  V  I  S  T  S  L  *  P  I  K  I  E  F  Y  F  F  F  T  H  V  L  V  D  L  V  M  K  I  K  V  L  Y  A  *  N  Q  V  C  I  F  *  N  I  F  M  I  *  N  K  I  V  F  S  H  *  Q  L  S  G  T  E  D  I  Y  Y  Y  W  L  N  M  T  C  Y  T  K  F  L  K  *  K  K  V  *  N  F  N  R  M  N  L  N  V  I  L  I  V  L  K  D  S  K  D  E  S  C  C  T  S  I  Y  Y  T  V  G  *  G  *  D  D  E  F  K  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0120F05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="88792" PGL_stop="89914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88792" e_stop="89914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="88792" e_stop="89914" e_length="1123"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88792" stop="89383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88834" stop="89536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88870" stop="89543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88871" stop="89505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88985" stop="89593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89100" stop="89824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89100" stop="89543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89134" stop="89899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89313" stop="89914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTTTTAAGTTCGTTAAAATTAAGTTTGAGGTACAGCTATTTCTTTAACAGGTTTAATCCATTTTATCTTGGGAGAAATTAATCAATAACCTTGGGTACAGTGAGGGAATTATTTCTTAAGGACACACAACAGTTTCTGTGGAGTCGGACTAATTCTTGTATTTTATGTATTTTCTGCTTCATCTTATTTCTGTTTATGTTCGTTGGTTAACCTTATAAATAAAGGTTACTATAAGAATAACAATCTTAAGAAATTTAATAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAATCTTTGTGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAATTTTATCGTTAAATCAAAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCGCCGGCTGAGAAACCTACAAAGTTTTCTAGAGTCAACTTTAAGAGATAACAGCTAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATATGTACAACAATGCCAAAACCTCAAAAGAACTCTGGGATGCTTTAAAAAAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAGAATTTCTGGACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGACATAATCCACGATCTCCATGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTTAAAAGTTATCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAATGCAAGGAGATGACTGTTAA</gDNA_template>
            <first_frame> F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  V  V  F  K  F  V  K  I  K  F  E  V  Q  L  F  L  *  Q  V  *  S  I  L  S  W  E  K  L  I  N  N  L  G  Y  S  E  G  I  I  S  *  G  H  T  T  V  S  V  E  S  D  *  F  L  Y  F  M  Y  F  L  L  H  L  I  S  V  Y  V  R  W  L  T  L  *  I  K  V  T  I  R  I  T  I  L  R  N  L  I  V  S  V  F  E  V  S  G  D  *  N  L  C  G  F  L  L  C  L  N  F  *  N  S  F  D  *  R  L  K  E  H  K  N  F  I  V  K  S  K  T  V  C  V  K  I  C  S  L  L  L  V  F  Q  I  L  N  L  S  A  I  C  D  R  K  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  R  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  N  S  *  R  C  S  S  I  S  L  R  *  V  C  R  S  S  L  M  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  Y  V  Q  Q  C  Q  N  L  K  R  T  L  G  C  F  K  K  S  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  I  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  T  *  S  T  I  S  M  L  K  D  *  L  *  M  M  L  F  K  W  L  Q  L  F  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  R  R  *  L  L  </first_frame>
            <second_frame>  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  S  L  R  Y  S  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  E  L  F  L  K  D  T  Q  Q  F  L  W  S  R  T  N  S  C  I  L  C  I  F  C  F  I  L  F  L  F  M  F  V  G  *  P  Y  K  *  R  L  L  *  E  *  Q  S  *  E  I  *  *  F  L  Y  L  R  F  L  E  I  K  I  F  V  V  F  Y  S  A  *  I  F  K  I  H  S  I  N  D  *  K  N  I  K  I  L  S  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  C  *  Y  F  K  Y  L  T  Y  L  P  F  V  T  E  K  N  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  A  G  *  E  T  Y  K  V  F  *  S  Q  L  *  E  I  T  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  *  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  K  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  M  Y  N  N  A  K  T  S  K  E  L  W  D  A  L  K  K  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  R  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  P  R  S  P  C  *  R  I  D  C  E  *  C  F  S  S  G  C  N  Y  L  K  V  I  S  I  V  E  G  L  *  K  L  L  E  T  Q  M  Q  G  D  D  C  * </second_frame>
            <third_frame>   L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  F  *  V  R  *  N  *  V  *  G  T  A  I  S  L  T  G  L  I  H  F  I  L  G  E  I  N  Q  *  P  W  V  Q  *  G  N  Y  F  L  R  T  H  N  S  F  C  G  V  G  L  I  L  V  F  Y  V  F  S  A  S  S  Y  F  C  L  C  S  L  V  N  L  I  N  K  G  Y  Y  K  N  N  N  L  K  K  F  N  S  F  C  I  *  G  F  W  R  L  K  S  L  W  F  S  T  L  L  E  F  L  K  F  I  R  L  T  I  K  R  T  *  K  F  Y  R  *  I  K  N  S  L  C  K  D  L  F  F  T  V  S  I  S  N  T  *  L  I  C  H  L  *  Q  K  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  T  K  F  S  R  V  N  F  K  R  *  Q  L  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  I  C  T  T  M  P  K  P  Q  K  N  S  G  M  L  *  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  E  F  L  D  Y  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  D  I  I  H  D  L  H  A  E  G  L  I  V  N  D  A  F  Q  V  A  A  I  I  *  K  L  S  P  L  W  K  D  F  K  N  Y  L  K  H  K  C  K  E  M  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0120F05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89534" stop="89728"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TILGKAWTHSDFLCKNYILSGLQDDLYNMYNNAKTSKELWDALKKVQNRRCRNEEIHCGRISGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="89926" PGL_stop="90630"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89926" e_stop="90630"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="89926" e_stop="90630" e_length="705"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89926" stop="90630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90072" stop="90630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395006" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90096" stop="90630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250407" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90128" stop="90619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGTCACGTGGTAATTCAGCAATATCTGAAGTAAATTTTATTGAAGAAGATCCTACAAAATTAAAGAAAAGAAAGAAAGCATCTGATAAAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAATTGCTTTAATTGTGGTAAAAATGGTCATATAGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGAAAACTTGGCTGAATCCAAATTAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATTCAAGAGAATGGTGGATAGATTCTGATGCCTCATACCATGTTTGTTCCAACAAAGAATTATTTTCATCATATACTCCAACACTTACAAATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCTAGCTCTAACTAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAATGCTACCTTAGTGATGGCCTTTTCAAACTCATGTAATTGCAGTTGATATGAATAAAGATTTTGCCTCTTCTTA</gDNA_template>
            <first_frame> *  G  *  E  S  K  R  I  I  R  L  Q  K  S  H  V  V  I  Q  Q  Y  L  K  *  I  L  L  K  K  I  L  Q  N  *  R  K  E  R  K  H  L  I  K  K  A  I  L  L  R  R  N  S  M  E  I  A  L  I  V  V  K  M  V  I  *  L  M  N  V  G  V  L  R  R  T  R  K  R  R  I  K  K  T  W  L  N  P  N  *  K  W  T  I  S  V  Q  C  F  Q  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  M  P  H  T  M  F  V  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  K  N  C  L  W  Q  T  P  L  L  Q  R  W  K  E  L  A  K  S  Y  *  R  *  H  Q  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  *  L  *  L  R  M  D  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  N  A  T  L  V  M  A  F  S  N  S  C  N  C  S  *  Y  E  *  R  F  C  L  F  L </first_frame>
            <second_frame>  K  V  E  N  R  R  G  *  *  G  C  R  K  V  T  W  *  F  S  N  I  *  S  K  F  Y  *  R  R  S  Y  K  I  K  E  K  K  E  S  I  *  *  K  K  Q  S  S  *  E  E  I  Q  W  K  L  L  *  L  W  *  K  W  S  Y  S  *  *  M  S  G  S  *  E  G  Q  E  K  E  G  S  R  K  L  G  *  I  Q  I  R  N  G  R  S  L  C  N  A  F  R  M  *  L  G  W  K  F  K  R  M  V  D  R  F  *  C  L  I  P  C  L  F  Q  Q  R  I  I  F  I  I  Y  S  N  T  Y  K  *  K  I  V  Y  G  K  L  R  C  C  K  G  G  R  N  W  Q  S  P  I  K  D  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  S  S  N  *  E  W  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K  M  L  P  *  *  W  P  F  Q  T  H  V  I  A  V  D  M  N  K  D  F  A  S  S   </second_frame>
            <third_frame>   R  L  R  I  E  E  D  N  K  A  A  E  K  S  R  G  N  S  A  I  S  E  V  N  F  I  E  E  D  P  T  K  L  K  K  R  K  K  A  S  D  K  K  S  N  P  P  K  K  K  F  N  G  N  C  F  N  C  G  K  N  G  H  I  A  N  E  C  R  G  P  K  K  D  K  K  K  K  D  Q  E  N  L  A  E  S  K  L  E  M  D  D  L  C  A  M  L  S  E  C  N  L  V  G  N  S  R  E  W  W  I  D  S  D  A  S  Y  H  V  C  S  N  K  E  L  F  S  S  Y  T  P  T  L  T  N  E  K  L  F  M  A  N  S  V  V  A  K  V  E  G  T  G  K  V  L  L  K  M  T  S  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  L  A  L  T  K  N  G  F  K  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  C  Y  L  S  D  G  L  F  K  L  M  *  L  Q  L  I  *  I  K  I  L  P  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0120F05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89928" stop="90593"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRIEEDNKAAEKSRGNSAISEVNFIEEDPTKLKKRKKASDKKSNPPKKKFNGNCFNCGKNGHIANECRGPKKDKKKKDQENLAESKLEMDDLCAMLSECNLVGNSREWWIDSDASYHVCSNKELFSSYTPTLTNEKLFMANSVVAKVEGTGKVLLKMTSGKVVTLNRVSYVPELRKNLVSILALTKNGFKCVFVSDKVVVSKNDMYVGKCYLSDGLFKLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="94363" PGL_stop="94756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94363" e_stop="94756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="94363" e_stop="94756" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94363" stop="94590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94373" stop="94756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACACGTTCCTTGCTGAAAATGGCTATAAAAGAAAGTCAATTTTTGATTTTTTCAAACACCGAAAATTTTCCTTCTCTGCATTCATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTAGTTGATGTTAAAGAAGTTTGAGGTACCGCTATTTTCTTTAACGGGTTTAATCCATTTTATCTTGGGAAAAATTAATTCATAACCTTGAGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGATTCGGATTAATTCTTGTATTTTATGTATTTTCTGCTTCATCTTATTTCTGTTTTTGTTCATTGGTTAACCTTATAAATAAATGTTACTATAAGAATAACAA</gDNA_template>
            <first_frame> I  H  V  P  C  *  K  W  L  *  K  K  V  N  F  *  F  F  Q  T  P  K  I  F  L  L  C  I  H  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  *  L  M  L  K  K  F  E  V  P  L  F  S  L  T  G  L  I  H  F  I  L  G  K  I  N  S  *  P  *  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  L  Y  F  M  Y  F  L  L  H  L  I  S  V  F  V  H  W  L  T  L  *  I  N  V  T  I  R  I  T  </first_frame>
            <second_frame>  Y  T  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  F  K  H  R  K  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  S  *  C  *  R  S  L  R  Y  R  Y  F  L  *  R  V  *  S  I  L  S  W  E  K  L  I  H  N  L  E  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  I  R  I  N  S  C  I  L  C  I  F  C  F  I  L  F  L  F  L  F  I  G  *  P  Y  K  *  M  L  L  *  E  *  Q </second_frame>
            <third_frame>   T  R  S  L  L  K  M  A  I  K  E  S  Q  F  L  I  F  S  N  T  E  N  F  P  S  L  H  S  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  V  V  L  K  L  V  D  V  K  E  V  *  G  T  A  I  F  F  N  G  F  N  P  F  Y  L  G  K  N  *  F  I  T  L  S  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  F  G  L  I  L  V  F  Y  V  F  S  A  S  S  Y  F  C  F  C  S  L  V  N  L  I  N  K  C  Y  Y  K  N  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0120F05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="103647" PGL_stop="104432"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103647" e_stop="103728"/>
            <exon e_start="103917" e_stop="103986"/>
            <exon e_start="104052" e_stop="104432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.067" e_score="0.927"/>
          <exon-intron don_prob="0.988" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="103647" e_stop="103728" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.067">
            <gDNA_intron_boundary i_start="103729" i_stop="103916" i_length="188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103917" e_stop="103986" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.955">
            <gDNA_intron_boundary i_start="103987" i_stop="104051" i_length="65"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="104052" e_stop="104432" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103647" stop="103728"/>
              <exon start="103917" stop="103986"/>
              <exon start="104052" stop="104432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCCGAAGAAAATATGGGTCCCTTAGTGATAGGTGGAAGTGCTTGCCCCTCCCCCAGCCACAGCCAAGCATCTACATCACAG : GAAATGTCAAGTGAGCCTCAAGCGAATTCTGGATTAAGCATCAAAAGTGTTTCACAAGAAAAACAATCAG : GATCAGGGGATGAATAATTTAAGTTAACCAGTACGTAAATAATTGAGAGTAGCAACTATAGTTGTTTGCTATTCTTGTGTTGTATATAGAAGGATAGATAGCTCGGGCCTGGATGCCGCTGAAGCTTATCACAGCATACTGTGATTTTGTTGTATATTATGTTCAATTTTGGGTTAGATTCCATGGGCAGATAGTTGTTAAACTCAATTGATTTGAGAGTGGTAAAATAATGTATTGGCATTGTAACTTGTAAATAGTCTTTTAACCTTATGATTCCAAGTGAACAGTGAGCCCTAGACATCTGCATAACAGTTGTAGTGGATGTTCACTTTTCATTGAGTTGTAAACAATAATAATATATTGGAGTCATTTTTTGGTGAA</gDNA_template>
            <first_frame> G  R  R  K  Y  G  S  L  S  D  R  W  K  C  L  P  L  P  Q  P  Q  P  S  I  Y  I  T   : G  N  V  K  *  A  S  S  E  F  W  I  K  H  Q  K  C  F  T  R  K  T  I  R :   I  R  G  *  I  I  *  V  N  Q  Y  V  N  N  *  E  *  Q  L  *  L  F  A  I  L  V  L  Y  I  E  G  *  I  A  R  A  W  M  P  L  K  L  I  T  A  Y  C  D  F  V  V  Y  Y  V  Q  F  W  V  R  F  H  G  Q  I  V  V  K  L  N  *  F  E  S  G  K  I  M  Y  W  H  C  N  L  *  I  V  F  *  P  Y  D  S  K  *  T  V  S  P  R  H  L  H  N  S  C  S  G  C  S  L  F  I  E  L  *  T  I  I  I  Y  W  S  H  F  L  V   </first_frame>
            <second_frame>  A  E  E  N  M  G  P  L  V  I  G  G  S  A  C  P  S  P  S  H  S  Q  A  S  T  S  Q  :  E  M  S  S  E  P  Q  A  N  S  G  L  S  I  K  S  V  S  Q  E  K  Q  S   : G  S  G  D  E  *  F  K  L  T  S  T  *  I  I  E  S  S  N  Y  S  C  L  L  F  L  C  C  I  *  K  D  R  *  L  G  P  G  C  R  *  S  L  S  Q  H  T  V  I  L  L  Y  I  M  F  N  F  G  L  D  S  M  G  R  *  L  L  N  S  I  D  L  R  V  V  K  *  C  I  G  I  V  T  C  K  *  S  F  N  L  M  I  P  S  E  Q  *  A  L  D  I  C  I  T  V  V  V  D  V  H  F  S  L  S  C  K  Q  *  *  Y  I  G  V  I  F  W  *  </second_frame>
            <third_frame>   P  K  K  I  W  V  P  *  *  *  V  E  V  L  A  P  P  P  A  T  A  K  H  L  H  H  R :   K  C  Q  V  S  L  K  R  I  L  D  *  A  S  K  V  F  H  K  K  N  N  Q  :  D  Q  G  M  N  N  L  S  *  P  V  R  K  *  L  R  V  A  T  I  V  V  C  Y  S  C  V  V  Y  R  R  I  D  S  S  G  L  D  A  A  E  A  Y  H  S  I  L  *  F  C  C  I  L  C  S  I  L  G  *  I  P  W  A  D  S  C  *  T  Q  L  I  *  E  W  *  N  N  V  L  A  L  *  L  V  N  S  L  L  T  L  *  F  Q  V  N  S  E  P  *  T  S  A  *  Q  L  *  W  M  F  T  F  H  *  V  V  N  N  N  N  I  L  E  S  F  F  G  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0120F05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 202 chains have been computed
$ 
$ memory statistics:
$ 62400 bytes spliced alignments in total
$ 30 spliced alignments have been stored
$ 2080 bytes was the average size of a spliced alignment
$ 16304 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1630 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 235 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:34:34
-->
