<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:37:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592141" ref_strand="+" ref_description="SGN-U592141 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctggcactgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="-" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="20846" stop="19874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20546" g_stop="20259" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="20177" i_length="82">
            <donor d_prob="0.974" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20176" g_stop="20138" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="328" r_length="40" r_score="0.821"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="-" ref_id="SGN-U592141" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20546" e_stop="20259"/>
          <exon e_start="20176" e_stop="20138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAGTTACCGTCCATTTCACACATGAGGACTCAAGCCTCGATACCATACTCATTTGGGAATCATATTCATTAAATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGATTCGTGACAC-CCGATCCCCTAAATCTACATGTCAGTTC</genome_strand>
        <mrna_strand>CTGGCACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGA..................................................................................ACACATGACACTCCGATCCCCTAAATCTACATGACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586538" ref_strand="+" ref_description="SGN-U586538 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|147777887|emb|CAN77974.1| (e_value=2e-37) hypothetical; ">
      <seq>cagagtttatgatacgccgaaagcgtaatagaccaattgattccaaatataaaattccttaaagaaggaaggagcaaatgatcaatatggtcatgataatgaggcaagtgctataaaggagcacattgacataacacttcataaaatcttgaaaaaggttcaggtacctgaaataatgaaaaaaattgaagagatctcgataagttatgtcttgttggaatcgatatcaaataaccgtcgacggtatctttgatataaggtagcgctcaatgaaataaaattgtgatgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtcataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatactagaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggcgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="-" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="68920" stop="67088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68620" g_stop="67388" g_length="1233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1237" r_length="1237" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="-" ref_id="SGN-U586538" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>1233</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68620" e_stop="67388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTATGATACGCCGAAAGCGTAATAGACCAATTGATTCCAAATATAAAATTCCTTAAAGAAGGAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTTCTATAAAAGAGCACATTGACATAACACTTCATAAAATCTTGAAAAAGGTTCAGGTACCTGAAATAATG--AAAAA-TGAAGAGATCTCGATAAGTTATGTCTTGTTGGAATCGATATCAAATAACCGTCGACGGTATCTTTGATATGAGGTAGCGCTCAATGATAT-AAATTGTGATGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACTATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTATGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACGGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGA-GAGTTTCTTGGTGATGAAACTCTATCTTGGTGTAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCATTTTCTCCCCGATAAAAGGACATCGAAATGGTGTTGAGCACATGATTGAATATCCTCGAAGGACCATAGTTATGGGTTTATTCTATCCCGAGGAATCCAAGACAAAATTGATTGGTTACGCAAATG</genome_strand>
        <mrna_strand>CAGAGTTTATGATACGCCGAAAGCGTAATAGACCAATTGATTCCAAATATAAAATTCCTTAAAGAAGGAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTGCTATAAAGGAGCACATTGACATAACACTTCATAAAATCTTGAAAAAGGTTCAGGTACCTGAAATAATGAAAAAAATTGAAGAGATCTCGATAAGTTATGTCTTGTTGGAATCGATATCAAATAACCGTCGACGGTATCTTTGATATAAGGTAGCGCTCAATGAAATAAAATTGTGATGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTCATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATACTAGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGCGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567070" ref_strand="+" ref_description="SGN-U567070 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>ttcttttagaattttagtaagttcttttataacacgttatcagcacgagtctctagctaattgagagtgagttttagttttttctttaactcatgttttggttgatctcgatatgagaatcaaggtattatttgcataagatcaggtatgtattttctaaaatattttatgatttagaataaaatagtattcagtcactagcaattatcaggaaccgaagacatatactactattggttgaatatgacatgctatataaaacttattaaatggaagaaggtataaaattttaatagcatgagtttgaatgttattttgattgttttgaaagactcaaagggtgagtcgtgttgtacttcggtctattataccgttggtcaagggtaagacgattgattcaagtttcatcgcaccaaaagggtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="-" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="71620" stop="70621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71346" g_stop="70921" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="-" ref_id="SGN-U567070" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71346" e_stop="70921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTATATCTCTTATGAGCTTGATTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTACTTTTTT-TTT-ACTCATGTGTTGGTTGATCTCGTTATGAAGATCAAAGTATTATATGCATAAAATCAGGTATGTATTTTCTAGAATATTTTTATGATTTAGAATAAAATAGTATTCAGTCACTAACAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATACAAAATTTCTTAAATAGAAGAAGGTATAAAATTTTAATAGAATGAATTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGATGAGTCATGTTGTACTTCGATTTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCGCACCAAAAGGGTAAG</genome_strand>
        <mrna_strand>TTCTTTTAGA-ATTTTAGTAAGTT-CTTTTATAACACGTTATCAGCACGAGTCTCTAGCTAATTGAGAGTGAGTTTTAGTTTTTTCTTTAACTCATGTTTTGGTTGATCTCGATATGAGAATCAAGGTATTATTTGCATAAGATCAGGTATGTATTTTCTAAAATA-TTTTATGATTTAGAATAAAATAGTATTCAGTCACTAGCAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATATAAAACTTATTAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCGTGTTGTACTTCGGTCTATTATACCGTTGGTCAAGGGTAAGACGATTGATTCAAGTTTCATCGCACCAAAAGGGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578561" ref_strand="+" ref_description="SGN-U578561 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|147804664|emb|CAN66637.1| (e_value=5e-131) hypothetical; (*ATH) AT2G10090.1 (e_value=4e-31) | Symbol: None | expressed protein | chr2:3830613-3830972 REVERSE | Aliases: F7B19.23, F7B19_23; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-24) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>cggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttgaagatctcatagtaaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="88426" stop="90929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88792" g_stop="90629" g_length="1838"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="1942" r_length="1852" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-U578561" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>1838</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88792" e_stop="90629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTTTTAAGTTCGTT-AA---AATTAAGTTTGAGGTACAGCTATTTCTTTAACAGGTTTAATCCATTTTATCTTGGGAGAAATTAATCAATAACCTTGGGTACAGTGAGGGAATT--ATTTCTTAAGGACACACAACAGTTTCTGTGGAGTCGGACTAATTCTTGTATTTTAT-GTATTTTCTGCTTCATCTTATTTCTGTTTATGTTCGTTGGTTAACCTTATAAATAAAGGTTACTATAAGAATAACAATCTTAAG-AAATTTA-ATAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAATCTTTGTGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAATTTTATCGTTAAATCAAAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCGCCGGCTGAGAAACCTACAAAGTTTTCTAGAGTCAACTTTAAGAGATAACAGCTAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGT---A-AAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATATGTACAACAATGCCAAAACCTCAAAAGAACTCTGGGATGCTTTA-AAAA-AAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAGAATTTCTGGACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGACATAATCCACGATCTCCATGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTTAAAAGTTATCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAATGCAAGGAGATGACTGTTAAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAG-AAA-A-GTCACGTGGTAATTCAGCAATATCTGAAGTAAATTTTATTGAAGAAGATCCTACAAAATTAAAGAAAAGAAAGAAAGCATCTGATAAAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAATTGCTTTAATTGTGGTAAAAATGGTCATATAGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGAAAACTTGGCTGAATCCAAATTAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATTCAAGAGAATGGTGGATAGATTCTGATGCCTCATACCATGTTTGTTCCAACAAAGAATTATTTTCATCATATACTCCAACACTTACAAATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCTAGCTCTAACTAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAATGCTACCTTAGTGATGGCCTTTTCAAACTC-ATGTAATTGCAGTTGATATGAATAAAGATTTTGCCTCTTCTT</genome_strand>
        <mrna_strand>TTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTG-T--TT-ATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597804" ref_strand="+" ref_description="SGN-U597804 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>agagagagagaatatgggtcccttagtgataggtggaagtgcttgcccctcccccagccacagccaagcatctacatcacaggaaatgtcaagtgagcctcaagcgaattctggattaagcatcaaaagtgtttcacaagaaaaacaatcaggatcaggggatgaataatttaagttaaccagtacgtaaataattgagagtagcaactaaagttgtttgctattcttgtgttgtatatagaaggatagatagctcgggcctggatgccgctgaagcttatcacagcatactgtgattttgttgtatattatgttcaattttgggttagattccatgggcagatagttgttaaactcaattgatttgagagtggtaaaataatgtattggcattgtaacttgtaaatagtcttttaaccttatgattccaagtgaacagtgagcccaagacatctgcataacagttgtaggggatgttcacttttcattgagttggaaacaataataatatattggagtcattttttggtgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0120F05-uKpC9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0120F05.1" temp_strand="+" temp_description="C00SLm0120F05.1  CU915753.7 htgs_phase:3 submitted_to_sgn_as:C00SLm0120F05 sequenced_by:sanger upload_account_name:uk">
        <position start="103351" stop="104735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103647" g_stop="103728" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103729" i_stop="103916" i_length="188">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.067" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103917" g_stop="103986" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="152" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103987" i_stop="104051" i_length="65">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104052" g_stop="104432" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="533" r_length="381" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="545"/>
      <MATCH_line gen_id="C00SLm0120F05.1" gen_strand="+" ref_id="SGN-U597804" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0120F05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103647" e_stop="103728"/>
          <exon e_start="103917" e_stop="103986"/>
          <exon e_start="104052" e_stop="104432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGAAGAAAATATGGGTCCCTTAGTGATAGGTGGAAGTGCTTGCCCCTCCCCCAGCCACAGCCAAGCATCTACATCACAGGCAAGCTGTTGAATCAATAAGTTCTTCTATATATTATTGTTAATTCTAGTTAGAAAATGAAACTATATATCCAGTAGCACGTGACATATTAACATTCGTTAAGGATATATCTATATATGTATATGTATATTGCTAGTGATTTGTGACAAAGCAAGTAAGTTGTAATACATTATGAGCATGGTTAGCAGGAAATGTCAAGTGAGCCTCAAGCGAATTCTGGATTAAGCATCAAAAGTGTTTCACAAGAAAAACAATCAGGTACTTAAATGTTGTATATTTATTTATTCTTTTGTAAGTGGAGCTGACCCCTCTATAATCTGCAGGATCAGGGGATGAATAATTTAAGTTAACCAGTACGTAAATAATTGAGAGTAGCAACTATAGTTGTTTGCTATTCTTGTGTTGTATATAGAAGGATAGATAGCTCGGGCCTGGATGCCGCTGAAGCTTATCACAGCATACTGTGATTTTGTTGTATATTATGTTCAATTTTGGGTTAGATTCCATGGGCAGATAGTTGTTAAACTCAATTGATTTGAGAGTGGTAAAATAATGTATTGGCATTGTAACTTGTAAATAGTCTTTTAACCTTATGATTCCAAGTGAACAGTGAGCCCTAGACATCTGCATAACAGTTGTAGTGGATGTTCACTTTTCATTGAGTTGTAAACAATAATAATATATTGGAGTCATTTTTTGGTGAA</genome_strand>
        <mrna_strand>AGAGAGAGAGAATATGGGTCCCTTAGTGATAGGTGGAAGTGCTTGCCCCTCCCCCAGCCACAGCCAAGCATCTACATCACAG............................................................................................................................................................................................GAAATGTCAAGTGAGCCTCAAGCGAATTCTGGATTAAGCATCAAAAGTGTTTCACAAGAAAAACAATCAG.................................................................GATCAGGGGATGAATAATTTAAGTTAACCAGTACGTAAATAATTGAGAGTAGCAACTAAAGTTGTTTGCTATTCTTGTGTTGTATATAGAAGGATAGATAGCTCGGGCCTGGATGCCGCTGAAGCTTATCACAGCATACTGTGATTTTGTTGTATATTATGTTCAATTTTGGGTTAGATTCCATGGGCAGATAGTTGTTAAACTCAATTGATTTGAGAGTGGTAAAATAATGTATTGGCATTGTAACTTGTAAATAGTCTTTTAACCTTATGATTCCAAGTGAACAGTGAGCCCAAGACATCTGCATAACAGTTGTAGGGGATGTTCACTTTTCATTGAGTTGGAAACAATAATAATATATTGGAGTCATTTTTTGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="20546" PGL_stop="20138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20546" e_stop="20259"/>
            <exon e_start="20176" e_stop="20138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.000" e_score="0.920"/>
          <exon-only e_score="0.821"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="20546" e_stop="20259" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20258" i_stop="20177" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.821">
            <gDNA_exon_boundary e_start="20176" e_stop="20138" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20546" stop="20259"/>
              <exon start="20176" stop="20138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAGTTACCGTCCATTTCACACATGAGGACTCAAGCCTCGATACCATACTCATTTGGGAATCATATTCATTAAATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCG : ATTCGTGACACCCGATCCCCTAAATCTACATGTCAGTTC</gDNA_template>
            <first_frame> R  V  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  H  *  Q  L  P  S  I  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  I  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  :  I  R  D  T  R  S  P  K  S  T  C  Q  F </first_frame>
            <second_frame>  G  Y  *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  S  Y  R  P  F  H  T  *  G  L  K  P  R  Y  H  T  H  L  G  I  I  F  I  K  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R :   F  V  T  P  D  P  L  N  L  H  V  S   </second_frame>
            <third_frame>   G  T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  N  T  I  S  L  T  V  T  V  H  F  T  H  E  D  S  S  L  D  T  I  L  I  W  E  S  Y  S  L  N  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V   : D  S  *  H  P  I  P  *  I  Y  M  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0120F05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="68620" PGL_stop="67388"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68620" e_stop="67388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="68620" e_stop="67388" e_length="1233"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68620" stop="67388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAGTCTATGATACGCCGAAAGCGTAATAGACCAATTGATTCCAAATATAAAATTCCTTAAAGAAGGAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTTCTATAAAAGAGCACATTGACATAACACTTCATAAAATCTTGAAAAAGGTTCAGGTACCTGAAATAATGAAAAATGAAGAGATCTCGATAAGTTATGTCTTGTTGGAATCGATATCAAATAACCGTCGACGGTATCTTTGATATGAGGTAGCGCTCAATGATATAAATTGTGATGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACTATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTATGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAACTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACGGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGTAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCATTTTCTCCCCGATAAAAGGACATCGAAATGGTGTTGAGCACATGATTGAATATCCTCGAAGGACCATAGTTATGGGTTTATTCTATCCCGAGGAATCCAAGACAAAATTGATTGGTTACGCAAATG</gDNA_template>
            <first_frame> Q  S  L  *  Y  A  E  S  V  I  D  Q  L  I  P  N  I  K  F  L  K  E  G  R  S  K  *  S  I  W  S  *  *  *  G  K  F  Y  K  R  A  H  *  H  N  T  S  *  N  L  E  K  G  S  G  T  *  N  N  E  K  *  R  D  L  D  K  L  C  L  V  G  I  D  I  K  *  P  S  T  V  S  L  I  *  G  S  A  Q  *  Y  K  L  *  *  G  S  *  I  Q  I  C  H  I  V  W  T  D  K  W  L  A  K  *  N  A  L  F  K  Y  I  L  F  H  L  E  K  *  H  F  G  L  V  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  Y  Y  A  I  V  *  P  *  D  I  K  Y  G  L  C  L  G  A  *  R  F  I  A  K  I  L  T  L  V  E  M  F  S  P  L  V  D  E  M  R  F  V  L  I  W  Q  H  M  K  T  *  M  H  V  N  E  *  L  *  C  L  A  R  Q  *  R  L  Y  E  N  P  *  N  N  R  G  V  *  S  I  *  E  F  E  R  N  L  S  N  K  A  S  R  I  L  I  W  I  E  I  V  K  E  E  K  G  Y  K  R  M  T  L  I  V  L  V  F  L  *  K  G  L  G  K  T  K  F  C  L  D  L  Q  I  V  N  L  T  N  K  I  F  V  *  R  C  T  Y  T  E  K  F  *  C  N  F  M  W  I  Y  R  I  H  *  V  P  Q  *  L  *  D  H  L  T  *  M  M  I  Q  F  D  L  K  R  R  M  R  V  S  W  *  *  N  S  I  L  V  *  S  G  H  *  C  I  L  L  T  I  L  F  Q  I  F  V  L  Q  *  I  Y  W  Q  D  S  F  S  P  R  *  K  D  I  E  M  V  L  S  T  *  L  N  I  L  E  G  P  *  L  W  V  Y  S  I  P  R  N  P  R  Q  N  *  L  V  T  Q  M </first_frame>
            <second_frame>  R  V  Y  D  T  P  K  A  *  *  T  N  *  F  Q  I  *  N  S  L  K  K  E  G  A  N  D  Q  Y  G  H  D  N  E  A  S  S  I  K  E  H  I  D  I  T  L  H  K  I  L  K  K  V  Q  V  P  E  I  M  K  N  E  E  I  S  I  S  Y  V  L  L  E  S  I  S  N  N  R  R  R  Y  L  *  Y  E  V  A  L  N  D  I  N  C  D  E  D  L  E  F  K  S  V  I  *  C  G  Q  I  N  G  W  P  S  K  M  H  Y  S  S  I  F  C  F  T  *  K  S  D  I  L  D  W  *  S  I  N  Q  D  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  R  K  I  S  N  T  V  Y  A  L  G  H  K  G  L  S  Q  K  S  *  H  *  W  R  C  F  L  L  W  W  M  K  *  G  L  F  *  S  G  N  I  *  K  L  E  C  M  *  M  N  N  C  N  V  *  L  D  N  E  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  K  E  T  Y  P  I  K  L  Q  E  F  L  Y  G  L  K  *  S  R  K  K  K  G  T  K  E  *  P  *  L  S  L  Y  F  Y  E  K  V  L  V  R  Q  N  F  V  L  T  Y  R  L  L  I  *  Q  I  K  Y  L  S  N  G  A  H  T  L  K  N  F  D  A  I  L  C  G  Y  I  A  F  I  E  Y  P  N  D  Y  E  I  T  *  H  K  *  *  F  S  L  I  S  K  E  G  *  E  F  L  G  D  E  T  L  S  W  C  N  Q  G  T  S  A  S  Y  *  Q  Y  Y  S  R  Y  L  F  C  S  K  F  T  G  K  I  H  F  L  P  D  K  R  T  S  K  W  C  *  A  H  D  *  I  S  S  K  D  H  S  Y  G  F  I  L  S  R  G  I  Q  D  K  I  D  W  L  R  K   </second_frame>
            <third_frame>   E  S  M  I  R  R  K  R  N  R  P  I  D  S  K  Y  K  I  P  *  R  R  K  E  Q  M  I  N  M  V  M  I  M  R  Q  V  L  *  K  S  T  L  T  *  H  F  I  K  S  *  K  R  F  R  Y  L  K  *  *  K  M  K  R  S  R  *  V  M  S  C  W  N  R  Y  Q  I  T  V  D  G  I  F  D  M  R  *  R  S  M  I  *  I  V  M  R  I  L  N  S  N  L  S  Y  S  V  D  R  *  M  V  G  Q  V  K  C  T  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  G  S  P  *  I  K  I  *  C  Q  W  G  T  N  K  L  L  C  D  S  I  T  V  R  Y  Q  I  R  F  M  P  W  G  I  K  V  Y  R  K  N  P  D  I  S  G  D  V  F  S  F  G  G  *  N  E  V  C  F  D  L  A  T  Y  E  N  L  N  A  C  K  *  I  I  V  M  S  S  *  T  M  K  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  V  *  K  K  L  I  Q  *  S  F  K  N  S  Y  M  D  *  N  S  Q  G  R  K  R  V  Q  K  N  D  P  N  C  P  C  I  F  M  K  R  S  W  *  D  K  I  L  S  *  P  T  D  C  *  F  D  K  *  N  I  C  L  T  V  H  I  H  *  K  I  L  M  Q  F  Y  V  D  I  S  H  S  L  S  T  P  M  I  M  R  S  L  D  I  N  D  D  S  V  *  S  Q  K  K  D  E  S  F  L  V  M  K  L  Y  L  G  V  I  R  A  L  V  H  L  T  N  N  I  I  P  D  I  C  F  A  V  N  L  L  A  R  F  I  F  S  P  I  K  G  H  R  N  G  V  E  H  M  I  E  Y  P  R  R  T  I  V  M  G  L  F  Y  P  E  E  S  K  T  K  L  I  G  Y  A  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0120F05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67640" stop="67389"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQKKDESFLVMKLYLGVIRALVHLTNNIIPDICFAVNLLARFIFSPIKGHRNGVEHMIEYPRRTIVMGLFYPEESKTKLIGYAN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0120F05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68568" stop="68371"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLKKEGANDQYGHDNEASSIKEHIDITLHKILKKVQVPEIMKNEEISISYVLLESISNNRRRYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="71346" PGL_stop="70921"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71346" e_stop="70921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="71346" e_stop="70921" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71346" stop="70921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTTATATCTCTTATGAGCTTGATTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTACTTTTTTTTTACTCATGTGTTGGTTGATCTCGTTATGAAGATCAAAGTATTATATGCATAAAATCAGGTATGTATTTTCTAGAATATTTTTATGATTTAGAATAAAATAGTATTCAGTCACTAACAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATACAAAATTTCTTAAATAGAAGAAGGTATAAAATTTTAATAGAATGAATTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGATGAGTCATGTTGTACTTCGATTTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCGCACCAAAAGGGTAAG</gDNA_template>
            <first_frame> F  I  Y  I  S  Y  E  L  D  F  I  T  R  Y  Q  H  E  S  L  A  N  *  D  *  V  L  L  F  F  Y  S  C  V  G  *  S  R  Y  E  D  Q  S  I  I  C  I  K  S  G  M  Y  F  L  E  Y  F  Y  D  L  E  *  N  S  I  Q  S  L  T  I  I  R  N  R  R  H  I  L  L  L  V  E  Y  D  M  L  Y  K  I  S  *  I  E  E  G  I  K  F  *  *  N  E  F  E  C  Y  F  D  C  F  E  R  L  K  G  *  V  M  L  Y  F  D  L  L  Y  R  W  L  R  V  R  R  *  I  Q  V  S  S  H  Q  K  G  K </first_frame>
            <second_frame>  S  F  I  S  L  M  S  L  I  L  *  H  V  I  S  T  S  L  *  P  I  K  I  E  F  Y  F  F  F  T  H  V  L  V  D  L  V  M  K  I  K  V  L  Y  A  *  N  Q  V  C  I  F  *  N  I  F  M  I  *  N  K  I  V  F  S  H  *  Q  L  S  G  T  E  D  I  Y  Y  Y  W  L  N  M  T  C  Y  T  K  F  L  K  *  K  K  V  *  N  F  N  R  M  N  L  N  V  I  L  I  V  L  K  D  S  K  D  E  S  C  C  T  S  I  Y  Y  T  V  G  *  G  *  D  D  E  F  K  F  H  R  T  K  R  V   </second_frame>
            <third_frame>   H  L  Y  L  L  *  A  *  F  Y  N  T  L  S  A  R  V  S  S  Q  L  R  L  S  F  T  F  F  L  L  M  C  W  L  I  S  L  *  R  S  K  Y  Y  M  H  K  I  R  Y  V  F  S  R  I  F  L  *  F  R  I  K  *  Y  S  V  T  N  N  Y  Q  E  P  K  T  Y  T  T  I  G  *  I  *  H  A  I  Q  N  F  L  N  R  R  R  Y  K  I  L  I  E  *  I  *  M  L  F  *  L  F  *  K  T  Q  R  M  S  H  V  V  L  R  F  I  I  P  L  V  K  G  K  T  M  N  S  S  F  I  A  P  K  G  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0120F05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="88792" PGL_stop="90629"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88792" e_stop="90629"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="88792" e_stop="90629" e_length="1838"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88792" stop="90629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTTTTAAGTTCGTTAAAATTAAGTTTGAGGTACAGCTATTTCTTTAACAGGTTTAATCCATTTTATCTTGGGAGAAATTAATCAATAACCTTGGGTACAGTGAGGGAATTATTTCTTAAGGACACACAACAGTTTCTGTGGAGTCGGACTAATTCTTGTATTTTATGTATTTTCTGCTTCATCTTATTTCTGTTTATGTTCGTTGGTTAACCTTATAAATAAAGGTTACTATAAGAATAACAATCTTAAGAAATTTAATAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAATCTTTGTGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAATTTTATCGTTAAATCAAAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTCAAATACTTAACTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCGCCGGCTGAGAAACCTACAAAGTTTTCTAGAGTCAACTTTAAGAGATAACAGCTAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATATGTACAACAATGCCAAAACCTCAAAAGAACTCTGGGATGCTTTAAAAAAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAGAATTTCTGGACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGACATAATCCACGATCTCCATGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTTAAAAGTTATCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAATGCAAGGAGATGACTGTTAAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGTCACGTGGTAATTCAGCAATATCTGAAGTAAATTTTATTGAAGAAGATCCTACAAAATTAAAGAAAAGAAAGAAAGCATCTGATAAAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAATTGCTTTAATTGTGGTAAAAATGGTCATATAGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGAAAACTTGGCTGAATCCAAATTAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATTCAAGAGAATGGTGGATAGATTCTGATGCCTCATACCATGTTTGTTCCAACAAAGAATTATTTTCATCATATACTCCAACACTTACAAATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCTAGCTCTAACTAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAATGCTACCTTAGTGATGGCCTTTTCAAACTCATGTAATTGCAGTTGATATGAATAAAGATTTTGCCTCTTCTT</gDNA_template>
            <first_frame> F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  V  V  F  K  F  V  K  I  K  F  E  V  Q  L  F  L  *  Q  V  *  S  I  L  S  W  E  K  L  I  N  N  L  G  Y  S  E  G  I  I  S  *  G  H  T  T  V  S  V  E  S  D  *  F  L  Y  F  M  Y  F  L  L  H  L  I  S  V  Y  V  R  W  L  T  L  *  I  K  V  T  I  R  I  T  I  L  R  N  L  I  V  S  V  F  E  V  S  G  D  *  N  L  C  G  F  L  L  C  L  N  F  *  N  S  F  D  *  R  L  K  E  H  K  N  F  I  V  K  S  K  T  V  C  V  K  I  C  S  L  L  L  V  F  Q  I  L  N  L  S  A  I  C  D  R  K  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  R  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  N  S  *  R  C  S  S  I  S  L  R  *  V  C  R  S  S  L  M  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  Y  V  Q  Q  C  Q  N  L  K  R  T  L  G  C  F  K  K  S  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  I  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  T  *  S  T  I  S  M  L  K  D  *  L  *  M  M  L  F  K  W  L  Q  L  F  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  R  R  *  L  L  K  I  S  *  *  G  *  E  S  K  R  I  I  R  L  Q  K  S  H  V  V  I  Q  Q  Y  L  K  *  I  L  L  K  K  I  L  Q  N  *  R  K  E  R  K  H  L  I  K  K  A  I  L  L  R  R  N  S  M  E  I  A  L  I  V  V  K  M  V  I  *  L  M  N  V  G  V  L  R  R  T  R  K  R  R  I  K  K  T  W  L  N  P  N  *  K  W  T  I  S  V  Q  C  F  Q  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  M  P  H  T  M  F  V  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  K  N  C  L  W  Q  T  P  L  L  Q  R  W  K  E  L  A  K  S  Y  *  R  *  H  Q  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  *  L  *  L  R  M  D  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  N  A  T  L  V  M  A  F  S  N  S  C  N  C  S  *  Y  E  *  R  F  C  L  F   </first_frame>
            <second_frame>  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  S  L  R  Y  S  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  E  L  F  L  K  D  T  Q  Q  F  L  W  S  R  T  N  S  C  I  L  C  I  F  C  F  I  L  F  L  F  M  F  V  G  *  P  Y  K  *  R  L  L  *  E  *  Q  S  *  E  I  *  *  F  L  Y  L  R  F  L  E  I  K  I  F  V  V  F  Y  S  A  *  I  F  K  I  H  S  I  N  D  *  K  N  I  K  I  L  S  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  C  *  Y  F  K  Y  L  T  Y  L  P  F  V  T  E  K  N  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  A  G  *  E  T  Y  K  V  F  *  S  Q  L  *  E  I  T  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  *  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  K  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  M  Y  N  N  A  K  T  S  K  E  L  W  D  A  L  K  K  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  R  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  P  R  S  P  C  *  R  I  D  C  E  *  C  F  S  S  G  C  N  Y  L  K  V  I  S  I  V  E  G  L  *  K  L  L  E  T  Q  M  Q  G  D  D  C  *  R  S  H  S  K  V  E  N  R  R  G  *  *  G  C  R  K  V  T  W  *  F  S  N  I  *  S  K  F  Y  *  R  R  S  Y  K  I  K  E  K  K  E  S  I  *  *  K  K  Q  S  S  *  E  E  I  Q  W  K  L  L  *  L  W  *  K  W  S  Y  S  *  *  M  S  G  S  *  E  G  Q  E  K  E  G  S  R  K  L  G  *  I  Q  I  R  N  G  R  S  L  C  N  A  F  R  M  *  L  G  W  K  F  K  R  M  V  D  R  F  *  C  L  I  P  C  L  F  Q  Q  R  I  I  F  I  I  Y  S  N  T  Y  K  *  K  I  V  Y  G  K  L  R  C  C  K  G  G  R  N  W  Q  S  P  I  K  D  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  S  S  N  *  E  W  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K  M  L  P  *  *  W  P  F  Q  T  H  V  I  A  V  D  M  N  K  D  F  A  S  S  </second_frame>
            <third_frame>   L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  F  *  V  R  *  N  *  V  *  G  T  A  I  S  L  T  G  L  I  H  F  I  L  G  E  I  N  Q  *  P  W  V  Q  *  G  N  Y  F  L  R  T  H  N  S  F  C  G  V  G  L  I  L  V  F  Y  V  F  S  A  S  S  Y  F  C  L  C  S  L  V  N  L  I  N  K  G  Y  Y  K  N  N  N  L  K  K  F  N  S  F  C  I  *  G  F  W  R  L  K  S  L  W  F  S  T  L  L  E  F  L  K  F  I  R  L  T  I  K  R  T  *  K  F  Y  R  *  I  K  N  S  L  C  K  D  L  F  F  T  V  S  I  S  N  T  *  L  I  C  H  L  *  Q  K  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  T  K  F  S  R  V  N  F  K  R  *  Q  L  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  I  C  T  T  M  P  K  P  Q  K  N  S  G  M  L  *  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  E  F  L  D  Y  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  D  I  I  H  D  L  H  A  E  G  L  I  V  N  D  A  F  Q  V  A  A  I  I  *  K  L  S  P  L  W  K  D  F  K  N  Y  L  K  H  K  C  K  E  M  T  V  K  D  L  I  V  R  L  R  I  E  E  D  N  K  A  A  E  K  S  R  G  N  S  A  I  S  E  V  N  F  I  E  E  D  P  T  K  L  K  K  R  K  K  A  S  D  K  K  S  N  P  P  K  K  K  F  N  G  N  C  F  N  C  G  K  N  G  H  I  A  N  E  C  R  G  P  K  K  D  K  K  K  K  D  Q  E  N  L  A  E  S  K  L  E  M  D  D  L  C  A  M  L  S  E  C  N  L  V  G  N  S  R  E  W  W  I  D  S  D  A  S  Y  H  V  C  S  N  K  E  L  F  S  S  Y  T  P  T  L  T  N  E  K  L  F  M  A  N  S  V  V  A  K  V  E  G  T  G  K  V  L  L  K  M  T  S  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  L  A  L  T  K  N  G  F  K  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  C  Y  L  S  D  G  L  F  K  L  M  *  L  Q  L  I  *  I  K  I  L  P  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0120F05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89847" stop="90593"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLSPLWKDFKNYLKHKCKEMTVKDLIVRLRIEEDNKAAEKSRGNSAISEVNFIEEDPTKLKKRKKASDKKSNPPKKKFNGNCFNCGKNGHIANECRGPKKDKKKKDQENLAESKLEMDDLCAMLSECNLVGNSREWWIDSDASYHVCSNKELFSSYTPTLTNEKLFMANSVVAKVEGTGKVLLKMTSGKVVTLNRVSYVPELRKNLVSILALTKNGFKCVFVSDKVVVSKNDMYVGKCYLSDGLFKLM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0120F05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89534" stop="89728"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TILGKAWTHSDFLCKNYILSGLQDDLYNMYNNAKTSKELWDALKKVQNRRCRNEEIHCGRISGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="103647" PGL_stop="104432"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103647" e_stop="103728"/>
            <exon e_start="103917" e_stop="103986"/>
            <exon e_start="104052" e_stop="104432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.067" e_score="0.927"/>
          <exon-intron don_prob="0.988" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="103647" e_stop="103728" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.067">
            <gDNA_intron_boundary i_start="103729" i_stop="103916" i_length="188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103917" e_stop="103986" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.955">
            <gDNA_intron_boundary i_start="103987" i_stop="104051" i_length="65"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="104052" e_stop="104432" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103647" stop="103728"/>
              <exon start="103917" stop="103986"/>
              <exon start="104052" stop="104432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597804" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCCGAAGAAAATATGGGTCCCTTAGTGATAGGTGGAAGTGCTTGCCCCTCCCCCAGCCACAGCCAAGCATCTACATCACAG : GAAATGTCAAGTGAGCCTCAAGCGAATTCTGGATTAAGCATCAAAAGTGTTTCACAAGAAAAACAATCAG : GATCAGGGGATGAATAATTTAAGTTAACCAGTACGTAAATAATTGAGAGTAGCAACTATAGTTGTTTGCTATTCTTGTGTTGTATATAGAAGGATAGATAGCTCGGGCCTGGATGCCGCTGAAGCTTATCACAGCATACTGTGATTTTGTTGTATATTATGTTCAATTTTGGGTTAGATTCCATGGGCAGATAGTTGTTAAACTCAATTGATTTGAGAGTGGTAAAATAATGTATTGGCATTGTAACTTGTAAATAGTCTTTTAACCTTATGATTCCAAGTGAACAGTGAGCCCTAGACATCTGCATAACAGTTGTAGTGGATGTTCACTTTTCATTGAGTTGTAAACAATAATAATATATTGGAGTCATTTTTTGGTGAA</gDNA_template>
            <first_frame> G  R  R  K  Y  G  S  L  S  D  R  W  K  C  L  P  L  P  Q  P  Q  P  S  I  Y  I  T   : G  N  V  K  *  A  S  S  E  F  W  I  K  H  Q  K  C  F  T  R  K  T  I  R :   I  R  G  *  I  I  *  V  N  Q  Y  V  N  N  *  E  *  Q  L  *  L  F  A  I  L  V  L  Y  I  E  G  *  I  A  R  A  W  M  P  L  K  L  I  T  A  Y  C  D  F  V  V  Y  Y  V  Q  F  W  V  R  F  H  G  Q  I  V  V  K  L  N  *  F  E  S  G  K  I  M  Y  W  H  C  N  L  *  I  V  F  *  P  Y  D  S  K  *  T  V  S  P  R  H  L  H  N  S  C  S  G  C  S  L  F  I  E  L  *  T  I  I  I  Y  W  S  H  F  L  V   </first_frame>
            <second_frame>  A  E  E  N  M  G  P  L  V  I  G  G  S  A  C  P  S  P  S  H  S  Q  A  S  T  S  Q  :  E  M  S  S  E  P  Q  A  N  S  G  L  S  I  K  S  V  S  Q  E  K  Q  S   : G  S  G  D  E  *  F  K  L  T  S  T  *  I  I  E  S  S  N  Y  S  C  L  L  F  L  C  C  I  *  K  D  R  *  L  G  P  G  C  R  *  S  L  S  Q  H  T  V  I  L  L  Y  I  M  F  N  F  G  L  D  S  M  G  R  *  L  L  N  S  I  D  L  R  V  V  K  *  C  I  G  I  V  T  C  K  *  S  F  N  L  M  I  P  S  E  Q  *  A  L  D  I  C  I  T  V  V  V  D  V  H  F  S  L  S  C  K  Q  *  *  Y  I  G  V  I  F  W  *  </second_frame>
            <third_frame>   P  K  K  I  W  V  P  *  *  *  V  E  V  L  A  P  P  P  A  T  A  K  H  L  H  H  R :   K  C  Q  V  S  L  K  R  I  L  D  *  A  S  K  V  F  H  K  K  N  N  Q  :  D  Q  G  M  N  N  L  S  *  P  V  R  K  *  L  R  V  A  T  I  V  V  C  Y  S  C  V  V  Y  R  R  I  D  S  S  G  L  D  A  A  E  A  Y  H  S  I  L  *  F  C  C  I  L  C  S  I  L  G  *  I  P  W  A  D  S  C  *  T  Q  L  I  *  E  W  *  N  N  V  L  A  L  *  L  V  N  S  L  L  T  L  *  F  Q  V  N  S  E  P  *  T  S  A  *  Q  L  *  W  M  F  T  F  H  *  V  V  N  N  N  N  I  L  E  S  F  F  G  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0120F05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 93 chains have been computed
$ 
$ memory statistics:
$ 10680 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2136 bytes was the average size of a spliced alignment
$ 10328 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2065 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 119 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:37:41
-->
