<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:49:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="24516" stop="25557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24816" g_stop="25269" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24816" e_stop="25269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACAAAATTAAATTACAATACACA-GAAAAAAATAGTTTAA-TTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACGCCTAAATA-ATTTTTTAAAAAAATATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGCATATGTGAGCCATTTTGTAACGGTAGGGGTATATGTGAGTCGTTTGTATAAAGGTAAGGACATATATGAGCCACTTTTATAAGAAGGGGTATATAAGCTCCAAATGACAAAGTTGAAGGGTATATCAGACCCTTTTCCCTCTAAAATTTTATAG</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTT-CC-CT-ATTTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="51285" stop="52120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51585" g_stop="51820" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51585" e_stop="51820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCCTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGT-GTTTGTACTGACCCCCTACTTTTATGTTT-TCTTCTTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGA-CCCCTACTTTTATGTTTATCTTC-TTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="51927" stop="52812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52227" g_stop="52512" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52227" e_stop="52512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGTCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCCGCCAGACAAGAAACAACTAAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="53251" stop="52219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52951" g_stop="52519" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52951" e_stop="52519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTAAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGCTGCAGAAAACACTGGGGGTGTCTGGCCCCTATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGCGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGACCCCTTGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="52287" stop="53439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52586" g_stop="53139" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52586" e_stop="53139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATAGGGGCCAGACACCCCCAGTGTTTTCTGCAGCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTTACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="53609" stop="52290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53309" g_stop="52590" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53309" e_stop="52590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATTCGCTCTTGTGGACTGAAACACAGATGGGTGGCATACCAGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTAATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTAAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGCTGCAGAAAACACTGGGGGTGTCTGGCCCCTATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="53606" stop="52343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53306" g_stop="52643" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53306" e_stop="52643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGCTCTTGTGGACTGAAACACAGATGGGTGGCATACCAGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTAATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTAAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGCTGCAGAAAACACTGGGGGTGTCTGGCCCCTATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCA-ATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="54246" stop="52857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53946" g_stop="53157" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53946" e_stop="53157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACAGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTAAATTGGTCGGACTGAGTAACATCCCGAACCCTGTCCTCTAGTGTAAGCACTATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGTCGTTGCCGCTATCTGTAAGGCCGAAATTCGCAATTCTGACCTCAACCCCTTCACAAACCGGCAAATTCGCTCTTGTGGACTGAAACACAGATGGGTGGCATACCAGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="54170" stop="52873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53870" g_stop="53173" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53870" e_stop="53173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACAGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTAAATTGGTCGGACTGAGTAACATCCCGAACCCTGTCCTCTAGTGTAAGCACTATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGTCGTTGCCGCTATCTGTAAGGCCGAAATTCGCAATTCTGACCTCAACCCCTTCACAAACCGGCAAATTCGCTCTTGTGGACTGAAACACAGATGGGTGGCATACCAGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="52913" stop="71344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53213" g_stop="53385" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53386" i_stop="54129" i_length="744">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54130" g_stop="54657" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53213" e_stop="53385"/>
          <exon e_start="54130" e_stop="54657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCTGGTATGCCACCCATCTGTGTTTCAGTCCACAAGAGCGAATTTGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGAATTTCGGCCTTACAGATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATAGTGCTTACACTAGAGGACAGGGTTCGGGATGTTACTCAGTCCGACCAATTTAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCTGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGACTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAACTTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCTAGTGCCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCAAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAAAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="54330" stop="53172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54030" g_stop="53472" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54030" e_stop="53472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACAGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTAAATTGGTCGGACTGAGTAACATCCCGAACCCTGTCCTCTAGTGTAAGCACTATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355026" ref_strand="+" ref_description="SGN-E355026 [cTOS-19-F16]">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="54713" stop="53571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54413" g_stop="53871" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E355026" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54413" e_stop="53871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGCACTAGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="54940" stop="53579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54640" g_stop="53879" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54640" e_stop="53879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTTTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTTGAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGCACTAGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="54940" stop="53680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54640" g_stop="53980" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54640" e_stop="53980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTTTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTTGAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGCACTAGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="55009" stop="53751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54709" g_stop="54051" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54709" e_stop="54051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTTTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTTGAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGCACTAGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="55458" stop="54179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55158" g_stop="54479" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55158" e_stop="54479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTAAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACTTTGTAACTGATCAAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTTTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTG</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCT-TAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="55529" stop="54217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55229" g_stop="54517" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55229" e_stop="54517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGATGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTAAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACTTTGTAACTGATCAAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCCTTTAACTTTCTTAACTCTGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="55529" stop="54334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55229" g_stop="54634" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55229" e_stop="54634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGATGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTAAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACTTTGTAACTGATCAAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="55529" stop="54404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55229" g_stop="54704" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55229" e_stop="54704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGATGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTAAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACTTTGTAACTGATCAAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="55458" stop="54500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55158" g_stop="54800" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55158" e_stop="54800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTAAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCT-TAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="57009" stop="56232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56709" g_stop="56533" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56709" e_stop="56533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="57884" stop="59188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58184" g_stop="58475" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58476" i_stop="58662" i_length="187">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58663" g_stop="58888" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="515" r_length="226" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58184" e_stop="58475"/>
          <exon e_start="58663" e_stop="58888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGCTAT-AAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGAATAGTATATGAGGATCGGAGTGTCACGTTCCAACATCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTGGAAAGATGTTAATATATTCAATCTAATGAACCTAATTCCCAAATGAGTATGATGATGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGG-GTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAGGATAG...........................................................................................................................................................................................TATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="70925" stop="69995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70625" g_stop="70295" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70625" e_stop="70295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCTAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTTCCCATAAAAGTCACAAGACAAGACCTATACACCTTTTCGACTATCACAGACTCACCCACCAGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGAAAATGAGGAAGATACATATGAAAATGTGGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACTAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="70025" stop="71284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70325" g_stop="70984" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70325" e_stop="70984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCCTGGCTCCACATTTTCATATGTATCTTCCTCATTTTCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCTGGTGGGTGAGTCTGTGATAGTCGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTATGGGAAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTAGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCTGTTCGTATCATCTCCTTTCTTCGTGCTAAGAG-ATGGTTAGTAAGGTTTGTTTAGCTTTCTTGGCACGCCTCAGGGATGATACCACCCAAGTACCTTCAATTGAGTCGGTTTTGATAGTCCGCGAGTTTCTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCTCAACTTCAAGAGTTGTTGAGCAAAGACTTCATTAGACCGAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGTGGG-AGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690958" ref_strand="+" ref_description="SGN-E690958 [LH_Ea04N20]">
      <seq>ccataaagattgtacagaatagattcggaaatgatcaacaccttaacaaatggagagatggattattctgatttgaaagcaaaattgcttcataacaaggacaaaccagcaattataaatattaatattggaactacattcaaaggggctatggatgacattgatgttattcttcaaacacttgaagattgtggttattcccatgataagttttatatccattgtgatgcagccctcaatggacttattgtccctttcactaaaaatgtgattagctttaagaagccaattgggagtgtcacaatttcaggtcacaagttcataggatgtccaattccttgtggagttcaaataacaagaaaaagtcacatcgcttatctctcaagaaatgtcgaatacattgcttctatggatgccacaatttctggaagtcggaatggcttaactccaattttgttgtggtatagtttaagctctaaaggtcaaattgggatacagcaagatgttaagagatgcctcaacaacgctagatatttaagagatcgtcttaagcaagcaaatattagtgtcatgcttaatgagttgagtactatagttgtgcttgagaggcctcatgatcatgagtttactcgtcattggcaactctcttgcgtgaaggatattgcacatgtaattgttatgccaagtatcacaagagaaacattggacgatttcttcattgatttggtgcaaaaaagaaaaatgtggtaccaagatggaagcgttaagcctccttgtgttgcagatgatattggtgctcaaaattgtgcatgcgctcttcataatggtcaatatatattcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="85681" stop="87492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85976" g_stop="86105" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86106" i_stop="86179" i_length="74">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86180" g_stop="86316" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="267" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86317" i_stop="86616" i_length="300">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86617" g_stop="87192" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="843" r_length="576" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-E690958" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85976" e_stop="86105"/>
          <exon e_start="86180" e_stop="86316"/>
          <exon e_start="86617" e_stop="87192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCAAGATTGTACAGAATAGATTTGGAAATGATCAACACATCAACAAATGGAGAGATGGATTATTCTGATTTGAAAGCAAAATTGCTTCATAACAAGGACAAACCAGCAATTATAAATATTAATATTGGTAAATTTTCATATTTCATTCTTTGATTATTTCATTCTCTTAGAGCTCTACCCTGGCCTTTTTCTTAATGGTAGGAACTACATTCAAAGGGGCTATGGATGACATTGATGTTATTCTTCAAACACTTGAAGATTGTGGTTATTCCCATGATAAGTTTTATATCCATTGTGATGCAGCCCTCAATGGACTTATTGTCCCTTTCACTAAAAATGTGAGTTTCTAACATATATCCAACAAACACTGTCGTTTGGTCGAGAATAAGTTATCTCAGTTATCCTGGGCCTGGACTTAGCTATCCTGGGATAACTTATCCCACCATGTATATGAGATAACTTATCCCATTATTATAATTAAACAGTGGGTGAGTCATCCCAAACATGACAACCATACAAGATACAAAATTTTTATTCCATCACTACTTGTTTTTACCCTCACACCAAACGACACCTAACAATATATACTACAATATAGAAATCTTTTGATTATTTTTGCTTCAATTAATTGACAACAGGTGATTAGCTTCAAGAAGCCAATTGGGAGTGTCACAATTTCAGGTCACAAGTTCATAGGATGTCCAATTCCTTGTGGAGTTCAAATAACAAGAAAAAGTCACATCGGTTATCTCTCAAGAAATGTCGAATACATTGCTTCTATGGATGCCACAATTTCTGGAAGTCGAAATGGCTTAACTCCAATTTTGTTGTGGTACAGTTTAAGCTCTAAAGGTCAAATTGGGATACAACAAGATGTTAAGAGATGCCTCAACAACGCTAGATATTTAAGAGATCGTCTTAAGCAAGCAAATATTAGTGTCATGCTTAATGAGTTGAGTACTATAGTTGTGCTTGAGAGGCCTCATGATCATGAGTTTACTCGTCATTGGCAACTCTCTTGCGTGAAGGATATTGCACATGTAATTGTTATGCCAAGTATCACAAGAGAAACATTGGACGATTTCTTCATTGATTTGGTGCAAAAAAGAAAAATGTGGTACCAAGATGGAAGCGTTAAGCCTCCTTGTGTTGCAGATGATATTGGTGCTCAAAATTGTGCATGCGCTCTTCATAATGGTCAATATATATTCCTT</genome_strand>
        <mrna_strand>CCATAAAGATTGTACAGAATAGATTCGGAAATGATCAACACCTTAACAAATGGAGAGATGGATTATTCTGATTTGAAAGCAAAATTGCTTCATAACAAGGACAAACCAGCAATTATAAATATTAATATTG..........................................................................GAACTACATTCAAAGGGGCTATGGATGACATTGATGTTATTCTTCAAACACTTGAAGATTGTGGTTATTCCCATGATAAGTTTTATATCCATTGTGATGCAGCCCTCAATGGACTTATTGTCCCTTTCACTAAAAAT............................................................................................................................................................................................................................................................................................................GTGATTAGCTTTAAGAAGCCAATTGGGAGTGTCACAATTTCAGGTCACAAGTTCATAGGATGTCCAATTCCTTGTGGAGTTCAAATAACAAGAAAAAGTCACATCGCTTATCTCTCAAGAAATGTCGAATACATTGCTTCTATGGATGCCACAATTTCTGGAAGTCGGAATGGCTTAACTCCAATTTTGTTGTGGTATAGTTTAAGCTCTAAAGGTCAAATTGGGATACAGCAAGATGTTAAGAGATGCCTCAACAACGCTAGATATTTAAGAGATCGTCTTAAGCAAGCAAATATTAGTGTCATGCTTAATGAGTTGAGTACTATAGTTGTGCTTGAGAGGCCTCATGATCATGAGTTTACTCGTCATTGGCAACTCTCTTGCGTGAAGGATATTGCACATGTAATTGTTATGCCAAGTATCACAAGAGAAACATTGGACGATTTCTTCATTGATTTGGTGCAAAAAAGAAAAATGTGGTACCAAGATGGAAGCGTTAAGCCTCCTTGTGTTGCAGATGATATTGGTGCTCAAAATTGTGCATGCGCTCTTCATAATGGTCAATATATATTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690461" ref_strand="+" ref_description="SGN-E690461 [LH_Ea03J03]">
      <seq>ctttctcaatggacttattgtccctttcactaaaaatgtgattagctttaagaagccaattgggagtgtcacaatttcaggtcacaagttcataggatgtccaattccttgtggagttcaaataacaagaaaaagtcacatcgcttatctctcaagaaatgtcgaatacattgcttctatggatgccacaatttctggaagtcggaatggcttaactccaattttgttgtggtatagtttaagctctaaaggtcaaattgggatacagcaagatgttaagagatgcctcaacaacgctagatatttaagagatcgtcttaagcaagcaaatattagtgtcatgcttaatgagttgagtactatagttgtgcttgagaggcctcatgatcatgagtttactcgtcattggcaactctcttgcgtgaaggatattgcacatgtaattgttatgccaagtatcacaagagaaacattggacgatttcttcattgatttggtgcaaaaaagaaaaatgtggtaccaagatggaagcgttaagcctccttgtgttgcagatgatattggtgctcaaaattgtgcatgcgctcttcataatggtcaatatatattcctttaaggaaacaaactccctatcgtccagatgatgaaatctcagcttcaatgtgctacaattggatggaattataggttcttttcatgttcttgtagaatctttttttgtctatgctacataatttgtgatttcaaactagttaagttggttgtatgacatccatatgtagattgtctaattattccataaataaattagggacctcatgttaagttgtgttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="85984" stop="87713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86280" g_stop="86316" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86317" i_stop="86616" i_length="300">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86617" g_stop="87412" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="834" r_length="797" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="835" polyA_stop="846"/>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-E690461" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86280" e_stop="86316"/>
          <exon e_start="86617" e_stop="87412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCTCAATGGACTTATTGTCCCTTTCACTAAAAATGTGAGTTTCTAACATATATCCAACAAACACTGTCGTTTGGTCGAGAATAAGTTATCTCAGTTATCCTGGGCCTGGACTTAGCTATCCTGGGATAACTTATCCCACCATGTATATGAGATAACTTATCCCATTATTATAATTAAACAGTGGGTGAGTCATCCCAAACATGACAACCATACAAGATACAAAATTTTTATTCCATCACTACTTGTTTTTACCCTCACACCAAACGACACCTAACAATATATACTACAATATAGAAATCTTTTGATTATTTTTGCTTCAATTAATTGACAACAGGTGATTAGCTTCAAGAAGCCAATTGGGAGTGTCACAATTTCAGGTCACAAGTTCATAGGATGTCCAATTCCTTGTGGAGTTCAAATAACAAGAAAAAGTCACATCGGTTATCTCTCAAGAAATGTCGAATACATTGCTTCTATGGATGCCACAATTTCTGGAAGTCGAAATGGCTTAACTCCAATTTTGTTGTGGTACAGTTTAAGCTCTAAAGGTCAAATTGGGATACAACAAGATGTTAAGAGATGCCTCAACAACGCTAGATATTTAAGAGATCGTCTTAAGCAAGCAAATATTAGTGTCATGCTTAATGAGTTGAGTACTATAGTTGTGCTTGAGAGGCCTCATGATCATGAGTTTACTCGTCATTGGCAACTCTCTTGCGTGAAGGATATTGCACATGTAATTGTTATGCCAAGTATCACAAGAGAAACATTGGACGATTTCTTCATTGATTTGGTGCAAAAAAGAAAAATGTGGTACCAAGATGGAAGCGTTAAGCCTCCTTGTGTTGCAGATGATATTGGTGCTCAAAATTGTGCATGCGCTCTTCATAATGGTCAATATATATTCCTTTAAGGAAACAAACTCCCTATCGTCTAGATGATGAAAT-TCAGCTTCAATGTGCTACAATTGGATGGAATTATAGGTTCTTTTCATGTTCTTGTAGAATCTTTTTTTGTCTATGCTACATAATTTGTGATTTCAAACTAGTTAAGTTGGTTGTATGACGTCCATATGTAGATTGTCTAATTAATCAATAAATAAATTAAGGACTTCATGTTAAGTTGTGTTG</genome_strand>
        <mrna_strand>CTTTCTCAATGGACTTATTGTCCCTTTCACTAAAAAT............................................................................................................................................................................................................................................................................................................GTGATTAGCTTTAAGAAGCCAATTGGGAGTGTCACAATTTCAGGTCACAAGTTCATAGGATGTCCAATTCCTTGTGGAGTTCAAATAACAAGAAAAAGTCACATCGCTTATCTCTCAAGAAATGTCGAATACATTGCTTCTATGGATGCCACAATTTCTGGAAGTCGGAATGGCTTAACTCCAATTTTGTTGTGGTATAGTTTAAGCTCTAAAGGTCAAATTGGGATACAGCAAGATGTTAAGAGATGCCTCAACAACGCTAGATATTTAAGAGATCGTCTTAAGCAAGCAAATATTAGTGTCATGCTTAATGAGTTGAGTACTATAGTTGTGCTTGAGAGGCCTCATGATCATGAGTTTACTCGTCATTGGCAACTCTCTTGCGTGAAGGATATTGCACATGTAATTGTTATGCCAAGTATCACAAGAGAAACATTGGACGATTTCTTCATTGATTTGGTGCAAAAAAGAAAAATGTGGTACCAAGATGGAAGCGTTAAGCCTCCTTGTGTTGCAGATGATATTGGTGCTCAAAATTGTGCATGCGCTCTTCATAATGGTCAATATATATTCCTTTAAGGAAACAAACTCCCTATCGTCCAGATGATGAAATCTCAGCTTCAATGTGCTACAATTGGATGGAATTATAGGTTCTTTTCATGTTCTTGTAGAATCTTTTTTTGTCTATGCTACATAATTTGTGATTTCAAACTAGTTAAGTTGGTTGTATGACATCCATATGTAGATTGTCTAATTATTCCATAAATAAATTAGGGACCTCATGTTAAGTTGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694301" ref_strand="+" ref_description="SGN-E694301 [LH_Ea03J03](-)">
      <seq>cctcaatggacttattgtccctttcactaaaaatgtgattagctttaagaagccaattgggagtgtcacaatttcaggtcacaagttcataggatgtccaattccttgtggagttcaaataacaagaaaaagtcacatcgcttatctctcaagaaatgtcgaatacattgcttctatggatgccacaatttctggaagtcggaatggcttaactccaattttgttgtggtatagtttaagctctaaaggtcaaattgggatacagcaagatgttaagagatgcctcaacaacgctagatatttaagagatcgtcttaagcaagcaaatattagtgtcatgcttaatgagttgagtactatagttgtgcttgagaggcctcatgatcatgagtttactcgtcattggcaactctcttgcgtgaaggatattgcccatgtaattgttatgccaagtatcacaagagaaacattggacgatttcttcattgatttggtgcaaaaaagaaaaatgtggtaccaagatggaagcgttaagcctccttgtgttgcagatgatattggtgctcaaaattgtgcatgcgctcttcataatggtcaatatatattcctttaaggaaacaaactccctatcgtccagatgatgaaatctcagcttcaatgtgctacaattggatggaattataggttcttttcatgttcttgtagaatctttttttgtctatgctacataatttgtgatttcaaactagttaagttggttgtatgacatccatatgtagattgtctaattaatcaataaagaaattaaggacctcatgttaagttgtgtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="85983" stop="87713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86283" g_stop="86316" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86317" i_stop="86616" i_length="300">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86617" g_stop="87408" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="827" r_length="793" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="831" polyA_stop="847"/>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-E694301" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86283" e_stop="86316"/>
          <exon e_start="86617" e_stop="87408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAATGGACTTATTGTCCCTTTCACTAAAAATGTGAGTTTCTAACATATATCCAACAAACACTGTCGTTTGGTCGAGAATAAGTTATCTCAGTTATCCTGGGCCTGGACTTAGCTATCCTGGGATAACTTATCCCACCATGTATATGAGATAACTTATCCCATTATTATAATTAAACAGTGGGTGAGTCATCCCAAACATGACAACCATACAAGATACAAAATTTTTATTCCATCACTACTTGTTTTTACCCTCACACCAAACGACACCTAACAATATATACTACAATATAGAAATCTTTTGATTATTTTTGCTTCAATTAATTGACAACAGGTGATTAGCTTCAAGAAGCCAATTGGGAGTGTCACAATTTCAGGTCACAAGTTCATAGGATGTCCAATTCCTTGTGGAGTTCAAATAACAAGAAAAAGTCACATCGGTTATCTCTCAAGAAATGTCGAATACATTGCTTCTATGGATGCCACAATTTCTGGAAGTCGAAATGGCTTAACTCCAATTTTGTTGTGGTACAGTTTAAGCTCTAAAGGTCAAATTGGGATACAACAAGATGTTAAGAGATGCCTCAACAACGCTAGATATTTAAGAGATCGTCTTAAGCAAGCAAATATTAGTGTCATGCTTAATGAGTTGAGTACTATAGTTGTGCTTGAGAGGCCTCATGATCATGAGTTTACTCGTCATTGGCAACTCTCTTGCGTGAAGGATATTGCACATGTAATTGTTATGCCAAGTATCACAAGAGAAACATTGGACGATTTCTTCATTGATTTGGTGCAAAAAAGAAAAATGTGGTACCAAGATGGAAGCGTTAAGCCTCCTTGTGTTGCAGATGATATTGGTGCTCAAAATTGTGCATGCGCTCTTCATAATGGTCAATATATATTCCTTTAAGGAAACAAACTCCCTATCGTCTAGATGATGAAAT-TCAGCTTCAATGTGCTACAATTGGATGGAATTATAGGTTCTTTTCATGTTCTTGTAGAATCTTTTTTTGTCTATGCTACATAATTTGTGATTTCAAACTAGTTAAGTTGGTTGTATGACGTCCATATGTAGATTGTCTAATTAATCAATAAATAAATTAAGGACTTCATGTTAAGTTGT</genome_strand>
        <mrna_strand>CCTCAATGGACTTATTGTCCCTTTCACTAAAAAT............................................................................................................................................................................................................................................................................................................GTGATTAGCTTTAAGAAGCCAATTGGGAGTGTCACAATTTCAGGTCACAAGTTCATAGGATGTCCAATTCCTTGTGGAGTTCAAATAACAAGAAAAAGTCACATCGCTTATCTCTCAAGAAATGTCGAATACATTGCTTCTATGGATGCCACAATTTCTGGAAGTCGGAATGGCTTAACTCCAATTTTGTTGTGGTATAGTTTAAGCTCTAAAGGTCAAATTGGGATACAGCAAGATGTTAAGAGATGCCTCAACAACGCTAGATATTTAAGAGATCGTCTTAAGCAAGCAAATATTAGTGTCATGCTTAATGAGTTGAGTACTATAGTTGTGCTTGAGAGGCCTCATGATCATGAGTTTACTCGTCATTGGCAACTCTCTTGCGTGAAGGATATTGCCCATGTAATTGTTATGCCAAGTATCACAAGAGAAACATTGGACGATTTCTTCATTGATTTGGTGCAAAAAAGAAAAATGTGGTACCAAGATGGAAGCGTTAAGCCTCCTTGTGTTGCAGATGATATTGGTGCTCAAAATTGTGCATGCGCTCTTCATAATGGTCAATATATATTCCTTTAAGGAAACAAACTCCCTATCGTCCAGATGATGAAATCTCAGCTTCAATGTGCTACAATTGGATGGAATTATAGGTTCTTTTCATGTTCTTGTAGAATCTTTTTTTGTCTATGCTACATAATTTGTGATTTCAAACTAGTTAAGTTGGTTGTATGACATCCATATGTAGATTGTCTAATTAATCAATAAAGAAATTAAGGACCTCATGTTAAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689810" ref_strand="+" ref_description="SGN-E689810 [LH_Ea01N24]">
      <seq>ccttgtggagttcaaataacaagaaaaagtcacatcgcttacctctcaagaaatgtcgaatacattgcttctatggatgccacaatttctggaagtcggaatggcttaactccaattttgttgtggtatagtttaagctctaaaggtcaaattgggatacagcaagatgttaagagatgcctcaacaacgctagatatttaagagatcgtcttaagcaagcaaatattagtgtcatgcttaatgagttgagtactatagttgtgcttgagaggcctcatgatcatgagtttactcgtcattggcaactctcttgcgtgaaggatattgcacatgtaattgttatgccaagtatcacaagagaaacattggacgatttcttcattgatttggtgcaaaaaagaaaaatgtggtaccaagatggaagcgttaagcctccttgtgttgcagatgatattggtgctcaaaattgtgcatgcgctcttcataatggtcaatatatattcctttaaggaaacaaactccctatcgtccagatgatgaaatctcagcttcaatgtgctacaattggatggaattataggttcttttcatgttcttgtagaatctttttttgtctatgctacataatttgtgatttcaaactagttaagttggttgtatgacatccatatgtagattgtctaattaatcaataaataaattaaggacctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="86386" stop="87697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86686" g_stop="87405" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-E689810" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86686" e_stop="87405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGTGGAGTTCAAATAACAAGAAAAAGTCACATCGGTTATCTCTCAAGAAATGTCGAATACATTGCTTCTATGGATGCCACAATTTCTGGAAGTCGAAATGGCTTAACTCCAATTTTGTTGTGGTACAGTTTAAGCTCTAAAGGTCAAATTGGGATACAACAAGATGTTAAGAGATGCCTCAACAACGCTAGATATTTAAGAGATCGTCTTAAGCAAGCAAATATTAGTGTCATGCTTAATGAGTTGAGTACTATAGTTGTGCTTGAGAGGCCTCATGATCATGAGTTTACTCGTCATTGGCAACTCTCTTGCGTGAAGGATATTGCACATGTAATTGTTATGCCAAGTATCACAAGAGAAACATTGGACGATTTCTTCATTGATTTGGTGCAAAAAAGAAAAATGTGGTACCAAGATGGAAGCGTTAAGCCTCCTTGTGTTGCAGATGATATTGGTGCTCAAAATTGTGCATGCGCTCTTCATAATGGTCAATATATATTCCTTTAAGGAAACAAACTCCCTATCGTCTAGATGATGAAAT-TCAGCTTCAATGTGCTACAATTGGATGGAATTATAGGTTCTTTTCATGTTCTTGTAGAATCTTTTTTTGTCTATGCTACATAATTTGTGATTTCAAACTAGTTAAGTTGGTTGTATGACGTCCATATGTAGATTGTCTAATTAATCAATAAATAAATTAAGGACTTCATGTTAAGT</genome_strand>
        <mrna_strand>CCTTGTGGAGTTCAAATAACAAGAAAAAGTCACATCGCTTACCTCTCAAGAAATGTCGAATACATTGCTTCTATGGATGCCACAATTTCTGGAAGTCGGAATGGCTTAACTCCAATTTTGTTGTGGTATAGTTTAAGCTCTAAAGGTCAAATTGGGATACAGCAAGATGTTAAGAGATGCCTCAACAACGCTAGATATTTAAGAGATCGTCTTAAGCAAGCAAATATTAGTGTCATGCTTAATGAGTTGAGTACTATAGTTGTGCTTGAGAGGCCTCATGATCATGAGTTTACTCGTCATTGGCAACTCTCTTGCGTGAAGGATATTGCACATGTAATTGTTATGCCAAGTATCACAAGAGAAACATTGGACGATTTCTTCATTGATTTGGTGCAAAAAAGAAAAATGTGGTACCAAGATGGAAGCGTTAAGCCTCCTTGTGTTGCAGATGATATTGGTGCTCAAAATTGTGCATGCGCTCTTCATAATGGTCAATATATATTCCTTTAAGGAAACAAACTCCCTATCGTCCAGATGATGAAATCTCAGCTTCAATGTGCTACAATTGGATGGAATTATAGGTTCTTTTCATGTTCTTGTAGAATCTTTTTTTGTCTATGCTACATAATTTGTGATTTCAAACTAGTTAAGTTGGTTGTATGACATCCATATGTAGATTGTCTAATTAATCAATAAATAAATTAAGGACCTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693650" ref_strand="+" ref_description="SGN-E693650 [LH_Ea01N24](-)">
      <seq>gtggagttcaaataacaagaaaaagtcacatcgcttatctctcaagaaatgtcgaatacattgcttctatggatgccacaatttctggaagtcggaatggcttaactccaattttgttgtggtatagtttaagctctaaaggtcaaattgggatacagcaagatgttaagagatgcctcaacaacgctagatatttaagagatcgtcttaagcaagcaaatattagtgtcatgcttaatgagttgagtactatagttgtgcttgagaggcctcatgatcatgagtttactcgtcattggcaactctctcgcgtgaaggatattgcacatgtaattgttatgccaagtatcacaagagaaccattggacgatttcttcattgatttggtgcaaaaaagaaaaatgtggtaccaagatggaagcgttaagcctccttgtgttgcagatgatattggtgctcaaaattgtgcatgcgctcttcataatggtcaatatatattcctttaaggaaacaaactccctatcgtccagatgatgaaatctcagcttcaatgtgctacaattggatggaattataggttcttttcatgttcttgtagaatctttttttgtctatgctacataatttgtgatttcaaactagttaagttggttgtatgacatccatatgtagaatgggtaattaatcaataaataaattaaggacctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="86390" stop="87697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86690" g_stop="87396" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="709" polyA_stop="725"/>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-E693650" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86690" e_stop="87396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGTTCAAATAACAAGAAAAAGTCACATCGGTTATCTCTCAAGAAATGTCGAATACATTGCTTCTATGGATGCCACAATTTCTGGAAGTCGAAATGGCTTAACTCCAATTTTGTTGTGGTACAGTTTAAGCTCTAAAGGTCAAATTGGGATACAACAAGATGTTAAGAGATGCCTCAACAACGCTAGATATTTAAGAGATCGTCTTAAGCAAGCAAATATTAGTGTCATGCTTAATGAGTTGAGTACTATAGTTGTGCTTGAGAGGCCTCATGATCATGAGTTTACTCGTCATTGGCAACTCTCTTGCGTGAAGGATATTGCACATGTAATTGTTATGCCAAGTATCACAAGAGAAACATTGGACGATTTCTTCATTGATTTGGTGCAAAAAAGAAAAATGTGGTACCAAGATGGAAGCGTTAAGCCTCCTTGTGTTGCAGATGATATTGGTGCTCAAAATTGTGCATGCGCTCTTCATAATGGTCAATATATATTCCTTTAAGGAAACAAACTCCCTATCGTCTAGATGATGAAAT-TCAGCTTCAATGTGCTACAATTGGATGGAATTATAGGTTCTTTTCATGTTCTTGTAGAATCTTTTTTTGTCTATGCTACATAATTTGTGATTTCAAACTAGTTAAGTTGGTTGTATGACGTCCATATGTAGATTGTCTAATTAATCAATAAATAAATTAAGGACTTC</genome_strand>
        <mrna_strand>GTGGAGTTCAAATAACAAGAAAAAGTCACATCGCTTATCTCTCAAGAAATGTCGAATACATTGCTTCTATGGATGCCACAATTTCTGGAAGTCGGAATGGCTTAACTCCAATTTTGTTGTGGTATAGTTTAAGCTCTAAAGGTCAAATTGGGATACAGCAAGATGTTAAGAGATGCCTCAACAACGCTAGATATTTAAGAGATCGTCTTAAGCAAGCAAATATTAGTGTCATGCTTAATGAGTTGAGTACTATAGTTGTGCTTGAGAGGCCTCATGATCATGAGTTTACTCGTCATTGGCAACTCTCTCGCGTGAAGGATATTGCACATGTAATTGTTATGCCAAGTATCACAAGAGAACCATTGGACGATTTCTTCATTGATTTGGTGCAAAAAAGAAAAATGTGGTACCAAGATGGAAGCGTTAAGCCTCCTTGTGTTGCAGATGATATTGGTGCTCAAAATTGTGCATGCGCTCTTCATAATGGTCAATATATATTCCTTTAAGGAAACAAACTCCCTATCGTCCAGATGATGAAATCTCAGCTTCAATGTGCTACAATTGGATGGAATTATAGGTTCTTTTCATGTTCTTGTAGAATCTTTTTTTGTCTATGCTACATAATTTGTGATTTCAAACTAGTTAAGTTGGTTGTATGACATCCATATGTAGAATGGGTAATTAATCAATAAATAAATTAAGGACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="92444" stop="93529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92744" g_stop="93229" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92744" e_stop="93229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCATTTTGGGTCCTTCCCGACCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCTGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAATTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCTAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGATACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="92870" stop="93770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93170" g_stop="93470" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93170" e_stop="93470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGATACATTCAGTCCTGTTATTCGGAAGGAAACCATTCGCCTGGTATTGTCACTCGCCGTGTGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACATGTCTGAAAATGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578258" ref_strand="+" ref_description="SGN-E578258 [LE12BE02]">
      <seq>gaaaatctctatcaccaaaattgtatgagtcaaaaaaatctcgtcctctttgaatacaaacaaaaacataataggttatgtataactacaactttttattccttcagaacctgttgactaaatggtttatataaggattggtattgtgttttaacatgatttgtgttttattaaagttttaattctttgttgacacttttgcttgtcattcttttttgtggtttcaattgtttttgctaaactattatattattgctttagttttaatattttggataactctaattgtcttgtttaaattaacattaaataagagtatgaaaatctaagtgtagttggatggaaaaataatgcttattgactgttgtatcttttgtgtgatttgcaactctaatttcttaaagctactagtattgttttgtgtatggcatgcttcaactttgattggatttctctaatcgtacctcatttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="100112" stop="99038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99812" g_stop="99338" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-E578258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99812" e_stop="99338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCTCTATCACCAAAATTGTATGAGTCAAAAAAATCTCGTCCTCTTTGAATACAAACAAAAACATAATAGGTTATGTATAACTACAACTTTTTATTCCTTCAGAACCTGTTGACTAAATGGTTTATATAAGGATTGGTATTGTGTTTTAACATGATTTGTGTTTTATTAAAGTTTTAATTCTTTGTTGACACTTTTGCTTGTCATTCTTTTTTGTGGTTTCAATTGTTTTTGCTAAACTATTATATTATTGCTTTAGTTTTAATATTTTGGATAACTCTAATTGTCTTGTTTAAATTAACATTAAATAAGAGTATGAAAATCTAAGTGTAGTTGGATGGAAAAATAATGCTTATTGACTGTTGTATCTTTTGTGTGATTTGCAACTCTAATTTCTTAAAGCTACTAGTATTGTTTTGTGTATGGCATGCTTCAACTTTGATTGGATTTCTCTAATCGTACCTCATTTTTAG</genome_strand>
        <mrna_strand>GAAAATCTCTATCACCAAAATTGTATGAGTCAAAAAAATCTCGTCCTCTTTGAATACAAACAAAAACATAATAGGTTATGTATAACTACAACTTTTTATTCCTTCAGAACCTGTTGACTAAATGGTTTATATAAGGATTGGTATTGTGTTTTAACATGATTTGTGTTTTATTAAAGTTTTAATTCTTTGTTGACACTTTTGCTTGTCATTCTTTTTTGTGGTTTCAATTGTTTTTGCTAAACTATTATATTATTGCTTTAGTTTTAATATTTTGGATAACTCTAATTGTCTTGTTTAAATTAACATTAAATAAGAGTATGAAAATCTAAGTGTAGTTGGATGGAAAAATAATGCTTATTGACTGTTGTATCTTTTGTGTGATTTGCAACTCTAATTTCTTAAAGCTACTAGTATTGTTTTGTGTATGGCATGCTTCAACTTTGATTGGATTTCTCTAATCGTACCTCATTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>32</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="24816" PGL_stop="25269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24816" e_stop="25269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="24816" e_stop="25269" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24816" stop="25269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACAAAATTAAATTACAATACACAGAAAAAAATAGTTTAATTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACGCCTAAATAATTTTTTAAAAAAATATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGCATATGTGAGCCATTTTGTAACGGTAGGGGTATATGTGAGTCGTTTGTATAAAGGTAAGGACATATATGAGCCACTTTTATAAGAAGGGGTATATAAGCTCCAAATGACAAAGTTGAAGGGTATATCAGACCCTTTTCCCTCTAAAATTTTATAG</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  Q  N  *  I  T  I  H  R  K  K  *  F  N  F  F  L  *  T  K  E  *  K  K  K  T  K  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  R  L  N  N  F  L  K  K  Y  *  K  *  Q  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  S  F  V  *  R  *  G  H  I  *  A  T  F  I  R  R  G  I  *  A  P  N  D  K  V  E  G  Y  I  R  P  F  S  L  *  N  F  I  </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  K  I  K  L  Q  Y  T  E  K  N  S  L  I  F  F  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  A  *  I  I  F  *  K  N  I  R  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  A  Y  V  S  H  F  V  T  V  G  V  Y  V  S  R  L  Y  K  G  K  D  I  Y  E  P  L  L  *  E  G  V  Y  K  L  Q  M  T  K  L  K  G  I  S  D  P  F  P  S  K  I  L  * </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  Q  K  K  I  V  *  F  F  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  *  F  F  K  K  I  L  E  V  T  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  H  M  *  A  I  L  *  R  *  G  Y  M  *  V  V  C  I  K  V  R  T  Y  M  S  H  F  Y  K  K  G  Y  I  S  S  K  *  Q  S  *  R  V  Y  Q  T  L  F  P  L  K  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0132C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="51585" PGL_stop="51820"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51585" e_stop="51820"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="51585" e_stop="51820" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51585" stop="51820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCCTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTTGTTATTTGTG</gDNA_template>
            <first_frame> *  *  T  *  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  P  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  C  T  D  P  L  L  L  C  F  L  L  C  Y  L   </first_frame>
            <second_frame>  N  E  P  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  V  L  T  P  Y  F  Y  V  F  F  F  V  I  C  </second_frame>
            <third_frame>   M  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  L  Y  *  P  P  T  F  M  F  S  S  L  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0132C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="52227" PGL_stop="52512"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52227" e_stop="52512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="52227" e_stop="52512" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52227" stop="52512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGTCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCCGCCAGACAAGAAACAACTAAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  S  L  L  F  L  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  K  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  R  Q  E  T  T  K  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  P  P  D  K  K  Q  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  V  F  T  F  P  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  Q  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  R  Q  T  R  N  N  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52276" stop="52512"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFILSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHPPDKKQLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="55229" PGL_stop="52519"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55229" e_stop="52519"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="55229" e_stop="52519" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55229" stop="54517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55229" stop="54634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55229" stop="54704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55158" stop="54479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55158" stop="54800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54709" stop="54051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54640" stop="53879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54640" stop="53980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54413" stop="53871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54030" stop="53472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53946" stop="53157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53870" stop="53173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53309" stop="52590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53306" stop="52643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52951" stop="52519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGATGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTAAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACTTTGTAACTGATCAAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTTTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTTGAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGCACTAGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACAGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTAAATTGGTCGGACTGAGTAACATCCCGAACCCTGTCCTCTAGTGTAAGCACTATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGTCGTTGCCGCTATCTGTAAGGCCGAAATTCGCAATTCTGACCTCAACCCCTTCACAAACCGGCAAATTCGCTCTTGTGGACTGAAACACAGATGGGTGGCATACCAGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTAATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTAAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGCTGCAGAAAACACTGGGGGTGTCTGGCCCCTATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGCGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGACCCCTTGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  M  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  K  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  R  F  E  I  D  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  Y  *  N  R  L  N  R  R  H  *  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  H  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  S  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  L  L  *  C  S  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  S  S  T  T  T  S  S  R  I  T  A  S  A  M  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  S  L  N  M  S  N  L  P  T  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  S  Q  F  *  P  Q  P  L  H  K  P  A  N  S  L  L  W  T  E  T  Q  M  G  G  I  P  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  M  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  R  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  K  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  C  C  R  K  H  W  G  C  L  A  P  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  R  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  T  P  C  R  C  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  W  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  *  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  L  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  C  A  F  N  F  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  L  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  R  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  I  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  V  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  V  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  F  P  R  P  P  R  P  P  E  *  Q  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  I  C  P  I  S  P  H  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  H  P  E  P  C  P  L  V  *  A  L  L  N  S  P  P  F  R  N  L  F  D  V  D  V  G  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  V  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  Q  I  R  S  C  G  L  K  H  R  W  V  A  Y  Q  D  N  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  A  A  A  E  N  T  G  G  V  W  P  L  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  K  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  F  V  T  D  Q  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  F  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  P  V  *  D  R  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  L  L  K  P  T  Q  S  K  A  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  T  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  K  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  S  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  P  Y  L  V  V  M  *  W  L  Q  F  A  H  H  L  G  R  F  G  D  H  H  F  L  D  H  H  V  L  Q  N  N  S  L  C  H  D  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  K  L  V  G  L  S  N  I  P  N  P  V  L  *  C  K  H  Y  *  T  H  L  P  F  E  T  F  L  M  S  M  S  G  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  S  L  P  L  S  V  R  P  K  F  A  I  L  T  S  T  P  S  Q  T  G  K  F  A  L  V  D  *  N  T  D  G  W  H  T  R  I  M  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  N  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  Y  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  P  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  *  D  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  P  E  P  E  V  L  L  Q  K  T  L  G  V  S  G  P  Y  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  A  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  D  P  L  P  L  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53488" stop="53099"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLNSPPFRNLFDVDVGVKSSGFTPSTSITKSTTSWKDFVVAAICKAEIRNSDLNPFTNRQIRSCGLKHRWVAYQDNARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53798" stop="53544"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAVLVTTISSTTTSSRITASAMTTSTSNIWRSVTLFWTISLNMSNLPTSIALSGFMHRSLREVLTGRRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52997" stop="52743"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIVSILRFRTLEDWRFQFQELTEKFMLIICHYRPSSKTWKRAYFQWNIHAGSHSSRMLYLRSLRCCCRKHWGCLAPIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54502" stop="54257"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGLRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTRVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54965" stop="54726"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKRHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52742" stop="52521"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWQSLILHLFSFPILPFSYYFLSRWRSHCPSIRWARRSSSSPRGRPPTTSTTTPCRCS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="52586" PGL_stop="53139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52586" e_stop="53139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="52586" e_stop="53139" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52586" stop="53139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATAGGGGCCAGACACCCCCAGTGTTTTCTGCAGCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTTACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> A  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  *  G  P  D  T  P  S  V  F  C  S  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  Y  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  *  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  L  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  R  G  Q  T  P  P  V  F  S  A  A  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  *  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  G  A  R  H  P  Q  C  F  L  Q  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  L  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  I  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52587" stop="53054"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEDGETEQVQNEGLPPQPTPEMINQVLAYLSGLSDRGQTPPVFSAAAPQAPEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="53213" PGL_stop="54657"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53213" e_stop="53385"/>
            <exon e_start="54130" e_stop="54657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.879"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="53213" e_stop="53385" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53386" i_stop="54129" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="54130" e_stop="54657" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53213" stop="53385"/>
              <exon start="54130" stop="54657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCTGGTATGCCACCCATCTGTGTTTCAGTCCACAAGAGCGAATTTGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGAATTTCGGCCTTACAGATAGCGGCAACGACAAAATCCTTCCAAG : AAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCTAGTGCCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCAAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAAAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  L  V  C  H  P  S  V  F  Q  S  T  R  A  N  L  P  V  C  E  G  V  E  V  R  I  A  N  F  G  L  T  D  S  G  N  D  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  A  F  D  *  V  G  F  S  S  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  R  S  Q  T  G  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  R  V  K  K  V  K  G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  W  Y  A  T  H  L  C  F  S  P  Q  E  R  I  C  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  T  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  M  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  L  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  K  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  K  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  I  C  V  S  V  H  K  S  E  F  A  G  L  *  R  G  *  G  Q  N  C  E  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  W  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  *  C  L  R  L  S  R  F  Q  *  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  S  I  S  N  R  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  Q  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53214" stop="53385"/>
                    <exon start="54130" stop="54656"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSWYATHLCFSPQERICRFVKGLRSELRISALQIAATTKSFQEMDDFDVILGMTWLSPQFAILDCNAKMVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTLVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLKPGTRPISIPPYRMAPAELRKLKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="56709" PGL_stop="56533"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56709" e_stop="56533"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="56709" e_stop="56533" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56709" stop="56533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  P  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0132C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="58184" PGL_stop="58888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58184" e_stop="58475"/>
            <exon e_start="58663" e_stop="58888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.938"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="58184" e_stop="58475" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58476" i_stop="58662" i_length="187"/>
          </intron>
          <exon e_serial="2" e_score="0.916">
            <gDNA_exon_boundary e_start="58663" e_stop="58888" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58184" stop="58475"/>
              <exon start="58663" stop="58888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGCTATAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGAATAGTATATGAGGATCGGAGTGTCACGTTCCAACATCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAG : TATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTGGAAAGATGTTAATATATTCAATCTAATGAACCTAATTCCCAAATGAGTATGATGATGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  A  I  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  Q  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  *  G  S  E  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I   : V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  W  K  D  V  N  I  F  N  L  M  N  L  I  P  K  *  V  *  *  *  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  L  *  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  E  *  Y  M  R  I  G  V  S  R  S  N  I  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  E  D  R  S  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  :  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  G  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  D  D  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  C  Y  K  E  G  L  M  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  N  S  I  *  G  S  E  C  H  V  P  T  S  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  S :   I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  R  C  *  Y  I  Q  S  N  E  P  N  S  Q  M  S  M  M  M  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58327" stop="58475"/>
                    <exon start="58663" stop="58732"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YMDRVPRSGTRIEYGSGVTFRHQDRMRIGVSRSDTRIVYGSGATFRYQDSILRSGVSRTDTRGIKIMNLERC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="70625" PGL_stop="70295"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70625" e_stop="70295"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="70625" e_stop="70295" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70625" stop="70295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCTAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTTCCCATAAAAGTCACAAGACAAGACCTATACACCTTTTCGACTATCACAGACTCACCCACCAGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGAAAATGAGGAAGATACATATGAAAATGTGGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACTAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  L  Q  N  L  E  K  A  K  S  Y  L  E  L  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  F  P  *  K  S  Q  D  K  T  Y  T  P  F  R  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  K  M  R  K  I  H  M  K  M  W  S  Q  G  Q  I  I  Q  K  P  Y  N  H  K  L  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  R  K  P  S  H  T  *  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  S  H  K  S  H  K  T  R  P  I  H  L  F  D  Y  H  R  L  T  H  Q  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  S  R  K  *  G  R  Y  I  *  K  C  G  A  R  V  K  *  Y  R  S  H  T  I  T  N  * </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  R  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  V  E  N  E  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  I  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70494" stop="70297"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPIKVTRQDLYTFSTITDSPTRVETRIGMSSNSQCKLRPVENEEDTYENVEPGSNNTEAIQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="70325" PGL_stop="70984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70325" e_stop="70984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="70325" e_stop="70984" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70325" stop="70984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGACCCTGGCTCCACATTTTCATATGTATCTTCCTCATTTTCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCTGGTGGGTGAGTCTGTGATAGTCGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTATGGGAAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTAGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCTGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGATGGTTAGTAAGGTTTGTTTAGCTTTCTTGGCACGCCTCAGGGATGATACCACCCAAGTACCTTCAATTGAGTCGGTTTTGATAGTCCGCGAGTTTCTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCTCAACTTCAAGAGTTGTTGAGCAAAGACTTCATTAGACCGAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  S  T  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  L  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  M  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  R  W  L  V  R  F  V  *  L  S  W  H  A  S  G  M  I  P  P  K  Y  L  Q  L  S  R  F  *  *  S  A  S  F  *  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  T  S  A  S  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  R  L  N  F  K  S  C  *  A  K  T  S  L  D  R  V  H  P  L  G </first_frame>
            <second_frame>  L  T  L  A  P  H  F  H  M  Y  L  P  H  F  L  L  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  W  W  V  S  L  *  *  S  K  R  C  I  G  L  V  L  *  L  L  W  E  A  I  L  M  *  T  W  L  S  *  K  W  L  T  S  M  *  F  *  V  *  L  G  F  L  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  L  F  V  S  S  P  F  F  V  L  R  D  G  *  *  G  L  F  S  F  L  G  T  P  Q  G  *  Y  H  P  S  T  F  N  *  V  G  F  D  S  P  R  V  S  R  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  R  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  *  V  K  G  V  K  G  S  T  S  R  V  V  E  Q  R  L  H  *  T  E  C  I  P  L   </second_frame>
            <third_frame>   *  P  W  L  H  I  F  I  C  I  F  L  I  F  Y  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  R  K  G  V  *  V  L  S  C  D  F  Y  G  K  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  L  R  C  N  S  R  Y  D  L  A  F  S  K  F  C  N  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  C  S  Y  H  L  L  S  S  C  *  E  M  V  S  K  V  C  L  A  F  L  A  R  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  L  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  D  F  I  R  P  S  A  S  P  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70325" stop="70714"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFSTGLNLHCELLDMPIRVSTLVGESVIVEKVYRSCLVTFMGSNTHVDLVILEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKRWLVRFV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70690" stop="70983"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMVSKVCLAFLARLRDDTTQVPSIESVLIVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKDFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="85976" PGL_stop="87412"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85976" e_stop="86105"/>
            <exon e_start="86180" e_stop="86316"/>
            <exon e_start="86617" e_stop="87412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.976" e_score="0.946"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="85976" e_stop="86105" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.976">
            <gDNA_intron_boundary i_start="86106" i_stop="86179" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86180" e_stop="86316" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86317" i_stop="86616" i_length="300"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="86617" e_stop="87412" e_length="796"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85976" stop="86105"/>
              <exon start="86180" stop="86316"/>
              <exon start="86617" stop="87192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86280" stop="86316"/>
              <exon start="86617" stop="87412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86283" stop="86316"/>
              <exon start="86617" stop="87408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86686" stop="87405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86690" stop="87396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGCAAGATTGTACAGAATAGATTTGGAAATGATCAACACATCAACAAATGGAGAGATGGATTATTCTGATTTGAAAGCAAAATTGCTTCATAACAAGGACAAACCAGCAATTATAAATATTAATATTG : GAACTACATTCAAAGGGGCTATGGATGACATTGATGTTATTCTTCAAACACTTGAAGATTGTGGTTATTCCCATGATAAGTTTTATATCCATTGTGATGCAGCCCTCAATGGACTTATTGTCCCTTTCACTAAAAAT : GTGATTAGCTTCAAGAAGCCAATTGGGAGTGTCACAATTTCAGGTCACAAGTTCATAGGATGTCCAATTCCTTGTGGAGTTCAAATAACAAGAAAAAGTCACATCGGTTATCTCTCAAGAAATGTCGAATACATTGCTTCTATGGATGCCACAATTTCTGGAAGTCGAAATGGCTTAACTCCAATTTTGTTGTGGTACAGTTTAAGCTCTAAAGGTCAAATTGGGATACAACAAGATGTTAAGAGATGCCTCAACAACGCTAGATATTTAAGAGATCGTCTTAAGCAAGCAAATATTAGTGTCATGCTTAATGAGTTGAGTACTATAGTTGTGCTTGAGAGGCCTCATGATCATGAGTTTACTCGTCATTGGCAACTCTCTTGCGTGAAGGATATTGCACATGTAATTGTTATGCCAAGTATCACAAGAGAAACATTGGACGATTTCTTCATTGATTTGGTGCAAAAAAGAAAAATGTGGTACCAAGATGGAAGCGTTAAGCCTCCTTGTGTTGCAGATGATATTGGTGCTCAAAATTGTGCATGCGCTCTTCATAATGGTCAATATATATTCCTTTAAGGAAACAAACTCCCTATCGTCTAGATGATGAAATTCAGCTTCAATGTGCTACAATTGGATGGAATTATAGGTTCTTTTCATGTTCTTGTAGAATCTTTTTTTGTCTATGCTACATAATTTGTGATTTCAAACTAGTTAAGTTGGTTGTATGACGTCCATATGTAGATTGTCTAATTAATCAATAAATAAATTAAGGACTTCATGTTAAGTTGTGTTG</gDNA_template>
            <first_frame> A  A  R  L  Y  R  I  D  L  E  M  I  N  T  S  T  N  G  E  M  D  Y  S  D  L  K  A  K  L  L  H  N  K  D  K  P  A  I  I  N  I  N  I   : G  T  T  F  K  G  A  M  D  D  I  D  V  I  L  Q  T  L  E  D  C  G  Y  S  H  D  K  F  Y  I  H  C  D  A  A  L  N  G  L  I  V  P  F  T  K  N  :  V  I  S  F  K  K  P  I  G  S  V  T  I  S  G  H  K  F  I  G  C  P  I  P  C  G  V  Q  I  T  R  K  S  H  I  G  Y  L  S  R  N  V  E  Y  I  A  S  M  D  A  T  I  S  G  S  R  N  G  L  T  P  I  L  L  W  Y  S  L  S  S  K  G  Q  I  G  I  Q  Q  D  V  K  R  C  L  N  N  A  R  Y  L  R  D  R  L  K  Q  A  N  I  S  V  M  L  N  E  L  S  T  I  V  V  L  E  R  P  H  D  H  E  F  T  R  H  W  Q  L  S  C  V  K  D  I  A  H  V  I  V  M  P  S  I  T  R  E  T  L  D  D  F  F  I  D  L  V  Q  K  R  K  M  W  Y  Q  D  G  S  V  K  P  P  C  V  A  D  D  I  G  A  Q  N  C  A  C  A  L  H  N  G  Q  Y  I  F  L  *  G  N  K  L  P  I  V  *  M  M  K  F  S  F  N  V  L  Q  L  D  G  I  I  G  S  F  H  V  L  V  E  S  F  F  V  Y  A  T  *  F  V  I  S  N  *  L  S  W  L  Y  D  V  H  M  *  I  V  *  L  I  N  K  *  I  K  D  F  M  L  S  C  V  </first_frame>
            <second_frame>  L  Q  D  C  T  E  *  I  W  K  *  S  T  H  Q  Q  M  E  R  W  I  I  L  I  *  K  Q  N  C  F  I  T  R  T  N  Q  Q  L  *  I  L  I  L  :  E  L  H  S  K  G  L  W  M  T  L  M  L  F  F  K  H  L  K  I  V  V  I  P  M  I  S  F  I  S  I  V  M  Q  P  S  M  D  L  L  S  L  S  L  K  M :   *  L  A  S  R  S  Q  L  G  V  S  Q  F  Q  V  T  S  S  *  D  V  Q  F  L  V  E  F  K  *  Q  E  K  V  T  S  V  I  S  Q  E  M  S  N  T  L  L  L  W  M  P  Q  F  L  E  V  E  M  A  *  L  Q  F  C  C  G  T  V  *  A  L  K  V  K  L  G  Y  N  K  M  L  R  D  A  S  T  T  L  D  I  *  E  I  V  L  S  K  Q  I  L  V  S  C  L  M  S  *  V  L  *  L  C  L  R  G  L  M  I  M  S  L  L  V  I  G  N  S  L  A  *  R  I  L  H  M  *  L  L  C  Q  V  S  Q  E  K  H  W  T  I  S  S  L  I  W  C  K  K  E  K  C  G  T  K  M  E  A  L  S  L  L  V  L  Q  M  I  L  V  L  K  I  V  H  A  L  F  I  M  V  N  I  Y  S  F  K  E  T  N  S  L  S  S  R  *  *  N  S  A  S  M  C  Y  N  W  M  E  L  *  V  L  F  M  F  L  *  N  L  F  L  S  M  L  H  N  L  *  F  Q  T  S  *  V  G  C  M  T  S  I  C  R  L  S  N  *  S  I  N  K  L  R  T  S  C  *  V  V  L </second_frame>
            <third_frame>   C  K  I  V  Q  N  R  F  G  N  D  Q  H  I  N  K  W  R  D  G  L  F  *  F  E  S  K  I  A  S  *  Q  G  Q  T  S  N  Y  K  Y  *  Y  W :   N  Y  I  Q  R  G  Y  G  *  H  *  C  Y  S  S  N  T  *  R  L  W  L  F  P  *  *  V  L  Y  P  L  *  C  S  P  Q  W  T  Y  C  P  F  H  *  K   : C  D  *  L  Q  E  A  N  W  E  C  H  N  F  R  S  Q  V  H  R  M  S  N  S  L  W  S  S  N  N  K  K  K  S  H  R  L  S  L  K  K  C  R  I  H  C  F  Y  G  C  H  N  F  W  K  S  K  W  L  N  S  N  F  V  V  V  Q  F  K  L  *  R  S  N  W  D  T  T  R  C  *  E  M  P  Q  Q  R  *  I  F  K  R  S  S  *  A  S  K  Y  *  C  H  A  *  *  V  E  Y  Y  S  C  A  *  E  A  S  *  S  *  V  Y  S  S  L  A  T  L  L  R  E  G  Y  C  T  C  N  C  Y  A  K  Y  H  K  R  N  I  G  R  F  L  H  *  F  G  A  K  K  K  N  V  V  P  R  W  K  R  *  A  S  L  C  C  R  *  Y  W  C  S  K  L  C  M  R  S  S  *  W  S  I  Y  I  P  L  R  K  Q  T  P  Y  R  L  D  D  E  I  Q  L  Q  C  A  T  I  G  W  N  Y  R  F  F  S  C  S  C  R  I  F  F  C  L  C  Y  I  I  C  D  F  K  L  V  K  L  V  V  *  R  P  Y  V  D  C  L  I  N  Q  *  I  N  *  G  L  H  V  K  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85976" stop="86105"/>
                    <exon start="86180" stop="86316"/>
                    <exon start="86617" stop="87195"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AARLYRIDLEMINTSTNGEMDYSDLKAKLLHNKDKPAIININIGTTFKGAMDDIDVILQTLEDCGYSHDKFYIHCDAALNGLIVPFTKNVISFKKPIGSVTISGHKFIGCPIPCGVQITRKSHIGYLSRNVEYIASMDATISGSRNGLTPILLWYSLSSKGQIGIQQDVKRCLNNARYLRDRLKQANISVMLNELSTIVVLERPHDHEFTRHWQLSCVKDIAHVIVMPSITRETLDDFFIDLVQKRKMWYQDGSVKPPCVADDIGAQNCACALHNGQYIFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="92744" PGL_stop="93470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92744" e_stop="93470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="92744" e_stop="93470" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92744" stop="93229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93170" stop="93470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCATTTTGGGTCCTTCCCGACCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCTGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAATTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCTAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGATACATTCAGTCCTGTTATTCGGAAGGAAACCATTCGCCTGGTATTGTCACTCGCCGTGTGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACATGTCTGAAAATGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  I  L  G  P  S  R  P  P  P  N  H  H  R  P  C  H  P  P  I  L  I  P  C  *  P  V  A  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  L  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  F  G  F  L  Y  L  S  P  M  G  G  T  *  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  P  I  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  S  S  K  P  P  V  L  G  T  H  V  *  K  C  </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  D  H  P  R  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  *  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  R  Y  I  Q  S  C  Y  S  E  G  N  H  S  P  G  I  V  T  R  R  V  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  A  S  P  P  C  L  V  H  M  S  E  N  V </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  H  F  G  S  F  P  T  T  P  E  S  P  P  P  V  P  P  P  N  T  H  P  M  L  T  R  G  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  I  W  V  L  V  P  K  P  H  G  R  H  L  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  D  T  F  S  P  V  I  R  K  E  T  I  R  L  V  L  S  L  A  V  C  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  C  L  K  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92746" stop="93468"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPEPPHTHNISSPIHFGSFPTTPESPPPVPPPNTHPMLTRGKAGIFKPKTFQATILPNTPLPDSEPTTYSVASKNAYWRHAMDDEFKALTDQKIWVLVPKPHGRHLVGCKWVYKIKHNADGSISRYKARLVAKGYNQEYGLDYSDTFSPVIRKETIRLVLSLAVCNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVDPRFPQHVCKLQKSLYGLKQAPRAWYTCLKM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="99812" PGL_stop="99338"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99812" e_stop="99338"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99812" e_stop="99338" e_length="475"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99812" stop="99338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578258" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATCTCTATCACCAAAATTGTATGAGTCAAAAAAATCTCGTCCTCTTTGAATACAAACAAAAACATAATAGGTTATGTATAACTACAACTTTTTATTCCTTCAGAACCTGTTGACTAAATGGTTTATATAAGGATTGGTATTGTGTTTTAACATGATTTGTGTTTTATTAAAGTTTTAATTCTTTGTTGACACTTTTGCTTGTCATTCTTTTTTGTGGTTTCAATTGTTTTTGCTAAACTATTATATTATTGCTTTAGTTTTAATATTTTGGATAACTCTAATTGTCTTGTTTAAATTAACATTAAATAAGAGTATGAAAATCTAAGTGTAGTTGGATGGAAAAATAATGCTTATTGACTGTTGTATCTTTTGTGTGATTTGCAACTCTAATTTCTTAAAGCTACTAGTATTGTTTTGTGTATGGCATGCTTCAACTTTGATTGGATTTCTCTAATCGTACCTCATTTTTAG</gDNA_template>
            <first_frame> E  N  L  Y  H  Q  N  C  M  S  Q  K  N  L  V  L  F  E  Y  K  Q  K  H  N  R  L  C  I  T  T  T  F  Y  S  F  R  T  C  *  L  N  G  L  Y  K  D  W  Y  C  V  L  T  *  F  V  F  Y  *  S  F  N  S  L  L  T  L  L  L  V  I  L  F  C  G  F  N  C  F  C  *  T  I  I  L  L  L  *  F  *  Y  F  G  *  L  *  L  S  C  L  N  *  H  *  I  R  V  *  K  S  K  C  S  W  M  E  K  *  C  L  L  T  V  V  S  F  V  *  F  A  T  L  I  S  *  S  Y  *  Y  C  F  V  Y  G  M  L  Q  L  *  L  D  F  S  N  R  T  S  F  L  </first_frame>
            <second_frame>  K  I  S  I  T  K  I  V  *  V  K  K  I  S  S  S  L  N  T  N  K  N  I  I  G  Y  V  *  L  Q  L  F  I  P  S  E  P  V  D  *  M  V  Y  I  R  I  G  I  V  F  *  H  D  L  C  F  I  K  V  L  I  L  C  *  H  F  C  L  S  F  F  F  V  V  S  I  V  F  A  K  L  L  Y  Y  C  F  S  F  N  I  L  D  N  S  N  C  L  V  *  I  N  I  K  *  E  Y  E  N  L  S  V  V  G  W  K  N  N  A  Y  *  L  L  Y  L  L  C  D  L  Q  L  *  F  L  K  A  T  S  I  V  L  C  M  A  C  F  N  F  D  W  I  S  L  I  V  P  H  F  * </second_frame>
            <third_frame>   K  S  L  S  P  K  L  Y  E  S  K  K  S  R  P  L  *  I  Q  T  K  T  *  *  V  M  Y  N  Y  N  F  L  F  L  Q  N  L  L  T  K  W  F  I  *  G  L  V  L  C  F  N  M  I  C  V  L  L  K  F  *  F  F  V  D  T  F  A  C  H  S  F  L  W  F  Q  L  F  L  L  N  Y  Y  I  I  A  L  V  L  I  F  W  I  T  L  I  V  L  F  K  L  T  L  N  K  S  M  K  I  *  V  *  L  D  G  K  I  M  L  I  D  C  C  I  F  C  V  I  C  N  S  N  F  L  K  L  L  V  L  F  C  V  W  H  A  S  T  L  I  G  F  L  *  S  Y  L  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0132C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 218 chains have been computed
$ 
$ memory statistics:
$ 101552 bytes spliced alignments in total
$ 32 spliced alignments have been stored
$ 3173 bytes was the average size of a spliced alignment
$ 19832 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1525 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 266 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:53:06
-->
