<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:53:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591120" ref_strand="+" ref_description="SGN-U591120 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="24515" stop="25557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24815" g_stop="25269" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-U591120" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24815" e_stop="25269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTGTAGATGACCAAATTTTTTCTTCGAATACAAAATTAAATTACAATACACA-GAAAAAAATAGTTTAA-TTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACGCCTAAATA-ATTTTTTAAAAAAATATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGCATATGTGAGCCATTTTGTAACGGTAGGGGTATATGTGAGTCGTTTGTATAAAGGTAAGGACATATATGAGCCACTTTTATAAGAAGGGGTATATAAGCTCCAAATGACAAAGTTGAAGGGTATATCAGACCCTTTTCCCTCTAAAATTTTATAG</genome_strand>
        <mrna_strand>CTTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTT-CC-CT-ATTTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603972" ref_strand="+" ref_description="SGN-U603972 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>attcaaaccctcattcttttagcctaattagtatataattaagaataaaagatgacaataatagcccactaattaacttaaggttaactcttttatcccccaagaaattgagttattaatatagacccacgaaatatataattatagcaggaataggccaaaacgcccctttaaaacttaaccagaattccaacttcaactgggattacgcaacctgtgacatcccgtcgcgcttgcgacggtccgtcatgcagggtcgtcagaaacttgatttcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="50916" stop="50097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50616" g_stop="50364" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-U603972" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50616" e_stop="50364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGAATTTGAGTTATTAATATAAACCCACGAAATATATAATTATAGCAGGAATAGTCCAAAACGCCCCTTTAAAACTTAACCAGAAATCCCACTCCAACTGGGATTACGCAAGCTGTGATGGGTCGTCGCGCCTGCGACGGTCCGTCCTGCT</genome_strand>
        <mrna_strand>ATTCAAACCCTCATTCTTTTAGCCTAATTAGTATATAATTAAGAATAAAAGATGACAATAATAGCCCACTAATTAACTTAAGGTTAACTCTTTTATCCCCCAAGAAATTGAGTTATTAATATAGACCCACGAAATATATAATTATAGCAGGAATAGGCCAAAACGCCCCTTTAAAACTTAACCAGAATTCCAACTTCAACTGGGATTACGCAACCTGTGACATCCCGTCGCGCTTGCGACGGTCCGTCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578865" ref_strand="+" ref_description="SGN-U578865 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=8e-164) Polyprotein,; (*SWP) sp|Q99315|YG31B_YEAST (e_value=2e-17) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>aagaacagcgacaaggggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcgcctagcccatctgatactagggcagtgactcctccaccgactgaggaagtaataagagaaggggaggatggggaaactgaacaagtgcagaatgagggattgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttatctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatcggaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttgggcctcattctctagcttgtttatggagaagtatatcccccgaactttgagggataggaaaagggatgagttcttgagcctagagcaaggtaggatgtcggtcaatgcatatgaggctaagtttcgtgcattatcccggtatgccacccaactgtgtttcagtccacaagagcgaattcgccggtttgtgaaggggttgaggtcagaattgcagatttcggccttacaaatagcggcaacgacaaaatccttccaagaggtggtagactttgtgatagaagtggaaggagtgaagccagacgacttcatcccgacatcgacatcaaaaaggtttcgaaagggaggtgagtttaatggtgcttacactagaggacagggttagggaagttactcagtccgaccaattcagtcttcactacagactgtagttgggggtccacctccgaccggtcaacacttctctgagagacctatgcatgaacccagagagtgctatggatgtggggagattggacatattaagagatattgtccaaaacagagttacagacctccaaaggttagaggtagaggtggtcatggcagaggccgttattctggaggacgtggcggtcgaggaaatggtggtcaccaaaacggccgaggtgatgggaaaactggagccactacatcacaacaaggtaggggcaacagacagaagaacgatagggcccattgttacgctttccctgggcggtctgaagcggaggaatctgatgctgtcatcacaggtaatcttttggtttgtgattgcatggcttctgtattgtttgatcctggatccacgttttcttatgtatcttcctcatttgctaacggtctaaatttacattgtgaattacttgatatgcctattcgtgtttctactccggtgggtgagtctgtggtagttgaaaaggtatataggtcttgtttggtgaactttgtggggagcaacacttatgtagatttggttatcttagaaatggttgattttgatgtaattctgggtatgacttggctttctccgcaatttgcgatcttggattgtaatgctaaaacggtgacattagccaagcctgggacagatccgttagtgtgggagggtgactacacttccaatccggtgcgcatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggatgacactacccaagtaccttcgattgagtcggtttctatagtctgtgagtttttggatgtgttccctgcagatcttcctggtatgccaccagatagggatattgacttctgtatcgatcttgaaccgggcacacgccccatttctatacccccttatagaatggctcccgtagagttaagagagttaaaggcccaacttcaagagttgttgagcaaaggtttcattagaccaagtgcatctccttggggtgctccgattttgtttgtgaagaagaaggatgggagttttagaatgtgcatagactacagacaactgaacaaggtaactattaagaacaagtatcctcttcctcgcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="52220" stop="55010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52520" g_stop="54711" g_length="2192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2192" r_length="2192" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-U578865" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>2192</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52520" e_stop="54711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGCGGCAAGGGGTCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATAGGGGCCAGACACCCCCAGTGTTTTCTGCAGCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTTACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCTGGTATGCCACCCATCTGTGTTTCAGTCCACAAGAGCGAATTTGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGAATTTCGGCCTTACAGATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATAGTGCTTACACTAGAGGACAGGGTTCGGGATGTTACTCAGTCCGACCAATTTAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCTGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGACTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAACTTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCTAGTGCCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCAAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAAAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATG</genome_strand>
        <mrna_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAAATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCATCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTAGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAAGGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGCGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACAGACAGAAGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGAATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAACGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGCATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCTATAGTCTGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGTAGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGTTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTAGAATGTGCATAGACTACAGACAACTGAACAAGGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581303" ref_strand="+" ref_description="SGN-U581303 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-69) Polyprotein,; ">
      <seq>cacgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtctgggacaatttctcctaatatgtccaatctccccacatccataacattctctggagtcaatcataggcccctcggagaagtgttgaccggtctgaggtggtcccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctccctttcgaagcctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaagtccgggggatatacttctccataaacaaactagagaatgaggcccaagtcataggtggtgcctctattggttgacactcgatatgtgaccgccaccacattttggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcctgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcactgccctagtatcagatgggctaggtgctcgtcctcttcctctagaggacgtcctcccacgacctctaccacggccccttgccgctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="54327" stop="52221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54027" g_stop="52520" g_length="1508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1508" r_length="1508" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-U581303" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>1508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54027" e_stop="52520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACAGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTAAATTGGTCGGACTGAGTAACATCCCGAACCCTGTCCTCTAGTGTAAGCACTATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGTCGTTGCCGCTATCTGTAAGGCCGAAATTCGCAATTCTGACCTCAACCCCTTCACAAACCGGCAAATTCGCTCTTGTGGACTGAAACACAGATGGGTGGCATACCAGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTAATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTAAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGCTGCAGAAAACACTGGGGGTGTCTGGCCCCTATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGCGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGACCCCTTGCCGCTGTTCTT</genome_strand>
        <mrna_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577296" ref_strand="+" ref_description="SGN-U577296 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-54) Polyprotein,; ">
      <seq>aagaacaacggtaagaggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcagtgactcctccaccgactgaggagataataagagaaggggaggatggggaaactgaacaagtgcaaaacgaggaaatgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttgtctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccacatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcagaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtcaaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttggacctcattctctagcttttttatggagaagtatatcccccggactttgagggataggaaaagggatgagttcctgagcctagagcaaggtaggatgtcggttaatgcttatgaagctaagttccgtgcactatccagatatgccacccaactatgtttcagtccacaagagcggattcgccgttttgtgaaggggttgaggtcagagttgtggatttcagccttatagatagcggctactgcaaaatccttccaagaggtggtatatttcgtggtagaggtggaaggagtgaagccagatgacttcaccacgacatcgacatcaaagaggtttcgtaagggaggtgagtttaagggttcttactctagaggacaaggttccggaggttactcagttcgaccatttcaatcttcactacagaccgtagttgggggtccacctcagaccggtcaacacttctccgagagacctatgcttgactccagagagtgttatgggtgtggggagactgggcatattaagagaaattgtccaaaacagagttatagacccccaatggctagaggtagaggtggtcatggtagaggccgtcattctggaggccgtggtggtcgacccacgggtggtcaccaagacggccgaggtgatgggcaaactggagccactacatcacaacatggtaggggcaacagacagacgaacgatatggcccattgttacgctttccctgggcggtttgaagcggaggcatctgatgctgtcatcacaggtaatcttctggtttgtgattgcacggcttctgtattttttgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="52220" stop="54245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52520" g_stop="53945" g_length="1426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1426" r_length="1426" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-U577296" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>1426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52520" e_stop="53945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGCGGCAAGGGGTCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATAGGGGCCAGACACCCCCAGTGTTTTCTGCAGCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTTACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCTGGTATGCCACCCATCTGTGTTTCAGTCCACAAGAGCGAATTTGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGAATTTCGGCCTTACAGATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATAGTGCTTACACTAGAGGACAGGGTTCGGGATGTTACTCAGTCCGACCAATTTAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCTGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGACTTCTGTATTGTTTGATCCT</genome_strand>
        <mrna_strand>AAGAACAACGGTAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGATAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAACGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCACATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCAGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGACCTCATTCTCTAGCTTTTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAAGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTATAGATAGCGGCTACTGCAAAATCCTTCCAAGAGGTGGTATATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAGAGGTTTCGTAAGGGAGGTGAGTTTAAGGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCATTTCAATCTTCACTACAGACCGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAAGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGCCGTGGTGGTCGACCCACGGGTGGTCACCAAGACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTTTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCACGGCTTCTGTATTTTTTGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590682" ref_strand="+" ref_description="SGN-U590682 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-28) Polyprotein,; ">
      <seq>ccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcggtgactcctccacctactgaagaagtaataagagaaggggaagatggggagaatgaacaagtgcaaaatgaggaattgccaccccagcctaccccagagatgataaatcaggtgctagcttatctgagtaggttgtctaatcaaggtcaagcacctccagtgtcttctgcaccaacacctccggtttcagaggtacaacatgcagccactatggctcctcgtatggatgcctcattagatataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggttcggtgttgagttcgtgagttatcaatttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcctcattttctagtttgnttatggagaagtatatcccccggactttgaggganaggaaaagggatgagtttttgagcctagagcaaggtannatgtcggtcaatgcatangangctaagtttcgtgcactatccnnatntgccactcaactttgtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="52239" stop="53564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52538" g_stop="53290" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-U590682" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52538" e_stop="53290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATAGGGGCCAGACACCCCCAGTGTTTTCTGCAGCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTTACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCTGGTATGCCACCCATCTGTGTTTCAG</genome_strand>
        <mrna_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCTACTGAAGAAGTAATAAGAGAAGGGGAAGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTAGCTTATCTGAGTAGGTTGTCTAATCAAGGTCAAGCACCTCCAGTGTCTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTTTCTAGTTTGNTTATGGAGAAGTATATCCCCCGGACTTTGAGGGANAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTANNATGTCGGTCAATGCATANGANGCTAAGTTTCGTGCACTATCCNNATNTGCCACTCAACTTTGTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="52251" stop="55401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52550" g_stop="53422" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53423" i_stop="54537" i_length="1115">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54538" g_stop="55101" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1436" r_length="563" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52550" e_stop="53422"/>
          <exon e_start="54538" e_stop="55101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATAGGGGCCAGACACCCCCAGTGTTTTCTGCAGCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTTACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCTGGTATGCCACCCATCTGTGTTTCAGTCCACAAGAGCGAATTTGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGAATTTCGGCCTTACAGATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATAGTGCTTACACTAGAGGACAGGGTTCGGGATGTTACTCAGTCCGACCAATTTAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCTGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGACTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAACTTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCTAGTGCCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCAAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAAAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATGACTTGTTTGATCAGTTACAAAGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAACGGGATTTTTTAGCCATATTTGGACCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590648" ref_strand="+" ref_description="SGN-U590648 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-17) Polyprotein,; ">
      <seq>gcacctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="52284" stop="53439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52584" g_stop="53139" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-U590648" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52584" e_stop="53139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATAGGGGCCAGACACCCCCAGTGTTTTCTGCAGCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTTACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>GCACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592109" ref_strand="-" ref_description="SGN-U592109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=5e-59) Putative; ">
      <seq>ggaaaagggatgagttcttgancctatagcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="52885" stop="71345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53185" g_stop="53385" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53386" i_stop="54129" i_length="744">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54130" g_stop="54658" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="723" r_length="522" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-U592109" ref_strand="-">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53185" e_stop="53385"/>
          <exon e_start="54130" e_stop="54658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCTGGTATGCCACCCATCTGTGTTTCAGTCCACAAGAGCGAATTTGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGAATTTCGGCCTTACAGATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATAGTGCTTACACTAGAGGACAGGGTTCGGGATGTTACTCAGTCCGACCAATTTAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCTGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGACTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAACTTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCTAGTGCCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCAAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAAAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAG</genome_strand>
        <mrna_strand>GGAAAAGGGATGAGTTCTTGANCCTATAGCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="55534" stop="54118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55230" g_stop="54418" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55230" e_stop="54418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACAAATCGATGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTAAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACTTTGTAACTGATCAAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTTTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTTGAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTG</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="56793" stop="55703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56495" g_stop="56003" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56495" e_stop="56003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAATTCCGCCTGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGCACCTCTATCTGATATGATGGATAGTGGAATCCCATGCAATCGAACGATTTCTGAGATATAGATCTTGGCTAACTTCTCTGCATTGTAAGTCACCTTTACCGGAATGAAATGAGGAGATTTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCATTGTCCTTGGAAGACCAACCACAAAGTCCATTGCAGTTCTTTCCCACTTCCATTTCGGAATGGGCGTTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAAAGTCAACAATATCACGCTTCATTCTGCTCCACCAAAAGTGTTGTTTTAGGTCACGATACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTATCAGAATAGTGTTGATCAAATCATCGACGCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599718" ref_strand="+" ref_description="SGN-U599718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205427|gb|ABI34389.1| (e_value=5e-23) Polyprotein,; ">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="57009" stop="56232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56709" g_stop="56533" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-U599718" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56709" e_stop="56533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593741" ref_strand="+" ref_description="SGN-U593741 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cagccctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="57881" stop="59188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58180" g_stop="58475" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58476" i_stop="58662" i_length="187">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58663" g_stop="58888" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="519" r_length="226" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-U593741" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58180" e_stop="58475"/>
          <exon e_start="58663" e_stop="58888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAATCTACTTTGTTAATGATGATGCCTTGCTAT-AAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGAATAGTATATGAGGATCGGAGTGTCACGTTCCAACATCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTGGAAAGATGTTAATATATTCAATCTAATGAACCTAATTCCCAAATGAGTATGATGATGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CAGCCCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGG-GTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAGGATAG...........................................................................................................................................................................................TATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566141" ref_strand="+" ref_description="SGN-U566141 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>tgtaaaggtaccagtttcatacttgagtattgcaggtttcttacttgagtattgcagatgaaacaaacccagggacctagtagaggtatcaggctctcatgatgacgagctagttgactgccagctggagacggtacagaaagtaggtgcatacttcccgatggcgtcagaaagtgtgacttttccatccaatggcaaagaggtttaggaaagtgacttgtccatataaaagtcagtttccttaacattttttggcagtttttgcaacttgagagaaacctcttcaagaacatttgcaatggctgctagaaacaaaggcagaagtattccaacaacaacagcaatctctggagcttttcgtatagttgtttaggaatacattctcttgttcgtaaactgtaaactattcctcaatctataaaggaattgttgtgttgtgttaaaagtctaggttgtccaagtgggataacttagtgggtagatagttttctacttagtcttgttaagcaagagggattattgcttaactgtgagattgataactttttcttacttttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattaaaaatcctgtgagacaagtcgtggttttactcccttaagcaaggaggtttccacgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="63378" stop="81711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63692" g_stop="64321" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="665" r_length="630" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-U566141" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63692" e_stop="64321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTACTTGAGTATTGCAGATGAAACAAACCATGTGACCTAGTAGAGGTACCAGGCTCTCATGGTGACGAGCCAGTTGACTGCTAGCTGGAGACGGAACAGAAAGTAGGTGCACACTTACCGATGGCGTCAGAAAGTAAGACTTCTCCAATCAATGTCAAAGAGTTTAAGGAAAGTGACTTGTCCATATAAAAGGCACTTTCCTAAACA-TCTTTGGCAGTTTTTGCAACTTGAGATAAAACTCTTCAAGAACATTTGCAAAGGCTGCTAGTAAACAAAGGCAGAATTATTCCAAGAACAATAGCAATCTCTGGAGCTTTTCGTGTAGTTGTTTAGGAATACATTCTCTTGTTTTTAAACTGTAAACTATTCCTGAATCTATAAAGGAATCAGTGTGTAGTGTTAAAAGTCTAGGTTGTCCAAGTGGGATAGCCTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTAAGCAATAGAAACTATTGCTTAAACGTGAGATTAAAAACTTCATCTCACATTTGTTGTAATCTTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAAGGATTGAAAATCCTCTGAGACAGGTCGTGGTTCTACTCCCTTAAGTAAGGAGGTTTCCACGTAAA</genome_strand>
        <mrna_strand>GTTTCTTACTTGAGTATTGCAGATGAAACAAACCCAGGGACCTAGTAGAGGTATCAGGCTCTCATGATGACGAGCTAGTTGACTGCCAGCTGGAGACGGTACAGAAAGTAGGTGCATACTTCCCGATGGCGTCAGAAAGTGTGACTTTTCCATCCAATGGCAAAGAGGTTTAGGAAAGTGACTTGTCCATATAAAAGTCAGTTTCCTTAACATTTTTTGGCAGTTTTTGCAACTTGAGAGAAACCTCTTCAAGAACATTTGCAATGGCTGCTAG-AAACAAAGGCAGAAGTATTCCAACAACAACAGCAATCTCTGGAGCTTTTCGTATAGTTGTTTAGGAATACATTCTCTTGTTCGTAAACTGTAAACTATTCCTCAATCTATAAAGGAATTGTTGTGTTGTGTTAAAAGTCTAGGTTGTCCAAGTGGGATAACTTAGTGGGTAGATAGTTTTCTACTTAGTCTTGTTAAGCAAGAGGGATTATTGCTTAACTGTGAGATTGATAACTTTTTCTTACTTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTAAAAATCCTGTGAGACAAGTCGTGGTTTTACTCCCTTAAGCAAGGAGGTTTCCACGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="70926" stop="70002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70627" g_stop="70302" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70627" e_stop="70302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCTAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTTCCCATAAAAGTCACAAGACAAGACCTATACACCTTTTCGACTATCACAGACTCACCCACCAGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGAAAATGAGGAAGATACATATGAAAATGTGGAGCCAGGGTCAAATAATACAGAAGCCATACAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592023" ref_strand="+" ref_description="SGN-U592023 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-56) Putative; ">
      <seq>ttacttcggcacgaggatttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="70024" stop="71262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70324" g_stop="70962" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="654" r_length="638" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-U592023" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70324" e_stop="70962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGACCCTGGCTCCACATTTTCATATGTATCTTCCTCATTTTCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCTGGTGGGTGAGTCTGTGATAGTCGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTATGGGAAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTAGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCTGTTCGTATCATCTCCTTTCTTCGTGCTAAGAG-ATGGTTAGTAAGGTTTGTTTAGCTTTCTTGGCACGCCTCAGGGATGATACCACCCAAGTACCTTCAATTGAGTCGGTTTTGATAGTCCGCGAGTTTCTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCTCAACTTCAAGAGTTGTTGAGCAAAGACTTCATT</genome_strand>
        <mrna_strand>ATTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGTGGG-AGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579267" ref_strand="+" ref_description="SGN-U579267 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|92429383|gb|ABE77149.1| (e_value=1e-125) aromatic; (*ATH) AT1G43710.1 (e_value=2e-103)  Symbol: EMB1075 | serine decarboxylase, identical to serine decarboxylase (Arabidopsis thaliana) GI:15011302; contains Pfam profile PF00282: Pyridoxal-dependent decarboxylase conserved domain | chr1:16488760-16490824 REVERSE | Aliases: F2J6.7, F2J6_... ; (*SWP) sp|P54772|DCHS_SOLLC (e_value=2e-100) Histidine decarboxylase OS=Solanum lycopersicum GN=HDC; ">
      <seq>ccataaagattgtacagaatagattcggaaatgatcaacaccttaacaaatggagagatggattattctgatttgaaagcaaaattgcttcataacaaggacaaaccagcaattataaatattaatattggaactacattcaaaggggctatggatgacattgatgttattcttcaaacacttgaagattgtggttattcccatgataagttttatatccattgtgatgcagccctcaatggacttattgtccctttcactaaaaatgtgattagctttaagaagccaattgggagtgtcacaatttcaggtcacaagttcataggatgtccaattccttgtggagttcaaataacaagaaaaagtcacatcgcttatctctcaagaaatgtcgaatacattgcttctatggatgccacaatttctggaagtcggaatggcttaactccaattttgttgtggtatagtttaagctctaaaggtcaaattgggatacagcaagatgttaagagatgcctcaacaacgctagatatttaagagatcgtcttaagcaagcaaatattagtgtcatgcttaatgagttgagtactatagttgtgcttgagaggcctcatgatcatgagtttactcgtcattggcaactctcttgcgtgaaggatattgcacatgtaattgttatgccaagtatcacaagagaaacattggacgatttcttcattgatttggtgcaaaaaagaaaaatgtggtaccaagatggaagcgttaagcctccttgtgttgcagatgatattggtgctcaaaattgtgcatgcgctcttcataatggtcaatatatattcctttaaggaaacaaactccctatcgtccagatgatgaaatctcagcttcaatgtgctacaattggatggaattataggttcttttcatgttcttgtagaatctttttttgtctatgctacataatttgtgatttcaaactagttaagttggttgtatgacatccatatgtagattgtctaattaatcaataaataaattaaggacctcatgttaagttgtgtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="85681" stop="87713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85976" g_stop="86105" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86106" i_stop="86179" i_length="74">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86180" g_stop="86316" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="267" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86317" i_stop="86616" i_length="300">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86617" g_stop="87408" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="1060" r_length="793" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1064" polyA_stop="1080"/>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-U579267" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1059</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85976" e_stop="86105"/>
          <exon e_start="86180" e_stop="86316"/>
          <exon e_start="86617" e_stop="87408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCAAGATTGTACAGAATAGATTTGGAAATGATCAACACATCAACAAATGGAGAGATGGATTATTCTGATTTGAAAGCAAAATTGCTTCATAACAAGGACAAACCAGCAATTATAAATATTAATATTGGTAAATTTTCATATTTCATTCTTTGATTATTTCATTCTCTTAGAGCTCTACCCTGGCCTTTTTCTTAATGGTAGGAACTACATTCAAAGGGGCTATGGATGACATTGATGTTATTCTTCAAACACTTGAAGATTGTGGTTATTCCCATGATAAGTTTTATATCCATTGTGATGCAGCCCTCAATGGACTTATTGTCCCTTTCACTAAAAATGTGAGTTTCTAACATATATCCAACAAACACTGTCGTTTGGTCGAGAATAAGTTATCTCAGTTATCCTGGGCCTGGACTTAGCTATCCTGGGATAACTTATCCCACCATGTATATGAGATAACTTATCCCATTATTATAATTAAACAGTGGGTGAGTCATCCCAAACATGACAACCATACAAGATACAAAATTTTTATTCCATCACTACTTGTTTTTACCCTCACACCAAACGACACCTAACAATATATACTACAATATAGAAATCTTTTGATTATTTTTGCTTCAATTAATTGACAACAGGTGATTAGCTTCAAGAAGCCAATTGGGAGTGTCACAATTTCAGGTCACAAGTTCATAGGATGTCCAATTCCTTGTGGAGTTCAAATAACAAGAAAAAGTCACATCGGTTATCTCTCAAGAAATGTCGAATACATTGCTTCTATGGATGCCACAATTTCTGGAAGTCGAAATGGCTTAACTCCAATTTTGTTGTGGTACAGTTTAAGCTCTAAAGGTCAAATTGGGATACAACAAGATGTTAAGAGATGCCTCAACAACGCTAGATATTTAAGAGATCGTCTTAAGCAAGCAAATATTAGTGTCATGCTTAATGAGTTGAGTACTATAGTTGTGCTTGAGAGGCCTCATGATCATGAGTTTACTCGTCATTGGCAACTCTCTTGCGTGAAGGATATTGCACATGTAATTGTTATGCCAAGTATCACAAGAGAAACATTGGACGATTTCTTCATTGATTTGGTGCAAAAAAGAAAAATGTGGTACCAAGATGGAAGCGTTAAGCCTCCTTGTGTTGCAGATGATATTGGTGCTCAAAATTGTGCATGCGCTCTTCATAATGGTCAATATATATTCCTTTAAGGAAACAAACTCCCTATCGTCTAGATGATGAAAT-TCAGCTTCAATGTGCTACAATTGGATGGAATTATAGGTTCTTTTCATGTTCTTGTAGAATCTTTTTTTGTCTATGCTACATAATTTGTGATTTCAAACTAGTTAAGTTGGTTGTATGACGTCCATATGTAGATTGTCTAATTAATCAATAAATAAATTAAGGACTTCATGTTAAGTTGT</genome_strand>
        <mrna_strand>CCATAAAGATTGTACAGAATAGATTCGGAAATGATCAACACCTTAACAAATGGAGAGATGGATTATTCTGATTTGAAAGCAAAATTGCTTCATAACAAGGACAAACCAGCAATTATAAATATTAATATTG..........................................................................GAACTACATTCAAAGGGGCTATGGATGACATTGATGTTATTCTTCAAACACTTGAAGATTGTGGTTATTCCCATGATAAGTTTTATATCCATTGTGATGCAGCCCTCAATGGACTTATTGTCCCTTTCACTAAAAAT............................................................................................................................................................................................................................................................................................................GTGATTAGCTTTAAGAAGCCAATTGGGAGTGTCACAATTTCAGGTCACAAGTTCATAGGATGTCCAATTCCTTGTGGAGTTCAAATAACAAGAAAAAGTCACATCGCTTATCTCTCAAGAAATGTCGAATACATTGCTTCTATGGATGCCACAATTTCTGGAAGTCGGAATGGCTTAACTCCAATTTTGTTGTGGTATAGTTTAAGCTCTAAAGGTCAAATTGGGATACAGCAAGATGTTAAGAGATGCCTCAACAACGCTAGATATTTAAGAGATCGTCTTAAGCAAGCAAATATTAGTGTCATGCTTAATGAGTTGAGTACTATAGTTGTGCTTGAGAGGCCTCATGATCATGAGTTTACTCGTCATTGGCAACTCTCTTGCGTGAAGGATATTGCACATGTAATTGTTATGCCAAGTATCACAAGAGAAACATTGGACGATTTCTTCATTGATTTGGTGCAAAAAAGAAAAATGTGGTACCAAGATGGAAGCGTTAAGCCTCCTTGTGTTGCAGATGATATTGGTGCTCAAAATTGTGCATGCGCTCTTCATAATGGTCAATATATATTCCTTTAAGGAAACAAACTCCCTATCGTCCAGATGATGAAATCTCAGCTTCAATGTGCTACAATTGGATGGAATTATAGGTTCTTTTCATGTTCTTGTAGAATCTTTTTTTGTCTATGCTACATAATTTGTGATTTCAAACTAGTTAAGTTGGTTGTATGACATCCATATGTAGATTGTCTAATTAATCAATAAATAAATTAAGGACCTCATGTTAAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586115" ref_strand="+" ref_description="SGN-U586115 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147852634|emb|CAN83798.1| (e_value=5e-33) hypothetical; (*ATH) ATMG00820.1 (e_value=6e-27) | Symbol: ORF170 | hypothetical protein | chrM:228573-229085 REVERSE | Aliases: ORF170; (*SWP) sp|P92520|M820_ARATH (e_value=5e-26) Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820; ">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatattaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatacgaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatgaatgacgagtttaaggctttgactgatcagaaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcagatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcattcctgttattcggcaggaaaccattctcctggtactgtcactcgtcgtgcgtaacattggctcatcaatcagttggatgtttcccatgcttttcttcatggtatgcttgatgaaactatctacatgacgcaaccaccgagctatgntgatcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="+" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="92444" stop="93682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92744" g_stop="93383" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="+" ref_id="SGN-U586115" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U586115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92744" e_stop="93383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCATTTTGGGTCCTTCCCGACCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCTGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAATTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCTAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGATACATTCAGTCCTGTTATTCGGAAGGAAACCATTCGCCTGGTATTGTCACTCGCCGTGTGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCG</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATATTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACGACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGAATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCATTCCTGTTATTCGGCAGGAAACCATTCTCCTGGTACTGTCACTCGTCGTGCGTAAC-ATTGGCTCATCAATCAGTTGGATGTTTCCCATGCTTTTCTTCATGGTATGCTTGATGAAACTATCTACATGACGCAACCACCGAGCTATGNTGATCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602098" ref_strand="+" ref_description="SGN-U602098 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gaaaatctctatcaccaaaattgtatgagtcaaaaaaatctcgtcctctttgaatacaaacaaaaacataataggttatgtataactacaactttttattccttcagaacctgttgactaaatggtttatataaggattggtattgtgttttaacatgatttgtgttttattaaagttttaattctttgttgacacttttgcttgtcattcttttttgtggtttcaattgtttttgctaaactattatattattgctttagttttaatattttggataactctaattgtcttgtttaaattaacattaaataagagtatgaaaatctaagtgtagttggatggaaaaataatgcttattgactgttgtatcttttgtgtgatttgcaactctaatttcttaaagctactagtattgttttgtgtatggcatgcttcaactttgattggatttctctaatcgtacctcatttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0132C12-daRFi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0132C12.2" temp_strand="-" temp_description="C00SLm0132C12.2  CU306816.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0132C12 sequenced_by:sanger upload_account_name:uk">
        <position start="100112" stop="99038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99812" g_stop="99338" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0132C12.2" gen_strand="-" ref_id="SGN-U602098" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0132C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99812" e_stop="99338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCTCTATCACCAAAATTGTATGAGTCAAAAAAATCTCGTCCTCTTTGAATACAAACAAAAACATAATAGGTTATGTATAACTACAACTTTTTATTCCTTCAGAACCTGTTGACTAAATGGTTTATATAAGGATTGGTATTGTGTTTTAACATGATTTGTGTTTTATTAAAGTTTTAATTCTTTGTTGACACTTTTGCTTGTCATTCTTTTTTGTGGTTTCAATTGTTTTTGCTAAACTATTATATTATTGCTTTAGTTTTAATATTTTGGATAACTCTAATTGTCTTGTTTAAATTAACATTAAATAAGAGTATGAAAATCTAAGTGTAGTTGGATGGAAAAATAATGCTTATTGACTGTTGTATCTTTTGTGTGATTTGCAACTCTAATTTCTTAAAGCTACTAGTATTGTTTTGTGTATGGCATGCTTCAACTTTGATTGGATTTCTCTAATCGTACCTCATTTTTAG</genome_strand>
        <mrna_strand>GAAAATCTCTATCACCAAAATTGTATGAGTCAAAAAAATCTCGTCCTCTTTGAATACAAACAAAAACATAATAGGTTATGTATAACTACAACTTTTTATTCCTTCAGAACCTGTTGACTAAATGGTTTATATAAGGATTGGTATTGTGTTTTAACATGATTTGTGTTTTATTAAAGTTTTAATTCTTTGTTGACACTTTTGCTTGTCATTCTTTTTTGTGGTTTCAATTGTTTTTGCTAAACTATTATATTATTGCTTTAGTTTTAATATTTTGGATAACTCTAATTGTCTTGTTTAAATTAACATTAAATAAGAGTATGAAAATCTAAGTGTAGTTGGATGGAAAAATAATGCTTATTGACTGTTGTATCTTTTGTGTGATTTGCAACTCTAATTTCTTAAAGCTACTAGTATTGTTTTGTGTATGGCATGCTTCAACTTTGATTGGATTTCTCTAATCGTACCTCATTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="24815" PGL_stop="25269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24815" e_stop="25269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="24815" e_stop="25269" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24815" stop="25269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATTGTAGATGACCAAATTTTTTCTTCGAATACAAAATTAAATTACAATACACAGAAAAAAATAGTTTAATTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACGCCTAAATAATTTTTTAAAAAAATATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGCATATGTGAGCCATTTTGTAACGGTAGGGGTATATGTGAGTCGTTTGTATAAAGGTAAGGACATATATGAGCCACTTTTATAAGAAGGGGTATATAAGCTCCAAATGACAAAGTTGAAGGGTATATCAGACCCTTTTCCCTCTAAAATTTTATAG</gDNA_template>
            <first_frame> L  I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  Q  K  K  I  V  *  F  F  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  *  F  F  K  K  I  L  E  V  T  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  H  M  *  A  I  L  *  R  *  G  Y  M  *  V  V  C  I  K  V  R  T  Y  M  S  H  F  Y  K  K  G  Y  I  S  S  K  *  Q  S  *  R  V  Y  Q  T  L  F  P  L  K  F  Y   </first_frame>
            <second_frame>  L  L  *  M  T  K  F  F  L  R  I  Q  N  *  I  T  I  H  R  K  K  *  F  N  F  F  L  *  T  K  E  *  K  K  K  T  K  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  R  L  N  N  F  L  K  K  Y  *  K  *  Q  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  S  F  V  *  R  *  G  H  I  *  A  T  F  I  R  R  G  I  *  A  P  N  D  K  V  E  G  Y  I  R  P  F  S  L  *  N  F  I  </second_frame>
            <third_frame>   Y  C  R  *  P  N  F  F  F  E  Y  K  I  K  L  Q  Y  T  E  K  N  S  L  I  F  F  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  A  *  I  I  F  *  K  N  I  R  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  A  Y  V  S  H  F  V  T  V  G  V  Y  V  S  R  L  Y  K  G  K  D  I  Y  E  P  L  L  *  E  G  V  Y  K  L  Q  M  T  K  L  K  G  I  S  D  P  F  P  S  K  I  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0132C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="50616" PGL_stop="50364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50616" e_stop="50364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="50616" e_stop="50364" e_length="253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50616" stop="50364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGAATTTGAGTTATTAATATAAACCCACGAAATATATAATTATAGCAGGAATAGTCCAAAACGCCCCTTTAAAACTTAACCAGAAATCCCACTCCAACTGGGATTACGCAAGCTGTGATGGGTCGTCGCGCCTGCGACGGTCCGTCCTGCT</gDNA_template>
            <first_frame> I  Q  T  L  F  L  L  P  *  L  V  Y  N  *  E  *  K  M  A  I  I  P  H  *  L  T  *  G  Y  L  F  *  P  P  R  I  *  V  I  N  I  N  P  R  N  I  *  L  *  Q  E  *  S  K  T  P  L  *  N  L  T  R  N  P  T  P  T  G  I  T  Q  A  V  M  G  R  R  A  C  D  G  P  S  C  </first_frame>
            <second_frame>  F  K  P  S  F  F  Y  P  N  *  Y  I  I  K  N  K  R  W  Q  *  Y  P  T  N  *  L  K  V  T  S  F  N  P  Q  E  F  E  L  L  I  *  T  H  E  I  Y  N  Y  S  R  N  S  P  K  R  P  F  K  T  *  P  E  I  P  L  Q  L  G  L  R  K  L  *  W  V  V  A  P  A  T  V  R  P  A </second_frame>
            <third_frame>   S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  T  P  L  I  N  L  R  L  P  L  L  T  P  K  N  L  S  Y  *  Y  K  P  T  K  Y  I  I  I  A  G  I  V  Q  N  A  P  L  K  L  N  Q  K  S  H  S  N  W  D  Y  A  S  C  D  G  S  S  R  L  R  R  S  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0132C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="52520" PGL_stop="55101"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52520" e_stop="54711"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="52520" e_stop="54711" e_length="2192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52520" stop="54711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52520" stop="53945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52538" stop="53290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52584" stop="53139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACAGCGGCAAGGGGTCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATAGGGGCCAGACACCCCCAGTGTTTTCTGCAGCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTTACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCTGGTATGCCACCCATCTGTGTTTCAGTCCACAAGAGCGAATTTGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGAATTTCGGCCTTACAGATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATAGTGCTTACACTAGAGGACAGGGTTCGGGATGTTACTCAGTCCGACCAATTTAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCTGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGACTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAACTTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCTAGTGCCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCAAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAAAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATG</gDNA_template>
            <first_frame> K  N  S  G  K  G  S  W  *  R  S  W  E  D  V  L  *  G  K  R  T  S  A  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  *  G  P  D  T  P  S  V  F  C  S  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  Y  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  *  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  L  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  L  V  C  H  P  S  V  F  Q  S  T  R  A  N  L  P  V  C  E  G  V  E  V  R  I  A  N  F  G  L  T  D  S  G  N  D  K  I  L  P  R  G  G  R  L  C  D  R  S  G  R  S  E  A  R  R  L  H  P  D  I  D  I  K  K  V  S  K  G  R  *  V  *  *  C  L  H  *  R  T  G  F  G  M  L  L  S  P  T  N  L  V  F  T  T  D  C  S  W  G  S  T  S  D  R  S  T  L  L  *  E  T  Y  A  *  T  Q  R  V  L  W  M  W  G  D  W  T  Y  *  E  I  L  S  K  T  E  L  Q  T  S  K  C  *  R  *  R  W  S  W  Q  R  L  L  F  W  R  T  W  W  S  R  K  W  W  S  P  K  R  P  R  *  W  A  N  W  S  H  Y  I  T  T  R  *  G  Q  R  T  D  E  R  *  G  P  L  L  R  F  P  W  A  V  *  S  G  G  I  *  C  C  H  H  R  *  S  F  G  L  *  L  H  D  F  C  I  V  *  S  W  I  H  I  F  L  C  I  F  L  I  C  *  W  S  N  F  T  L  *  I  T  *  Y  A  Y  S  C  F  Y  S  G  G  *  V  C  G  S  *  K  G  V  *  V  L  F  G  E  L  C  G  E  Q  H  L  C  R  F  G  Y  L  R  N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  A  F  D  *  V  G  F  S  S  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  R  S  Q  T  G  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  R  V  K  K  V  K  G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L  Q  T  T  K  Q  G  N  H  K  E  Q  V  S  S  S  P  H  *   </first_frame>
            <second_frame>  R  T  A  A  R  G  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  R  G  Q  T  P  P  V  F  S  A  A  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  *  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  W  Y  A  T  H  L  C  F  S  P  Q  E  R  I  C  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  T  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K  P  D  D  F  T  P  T  S  T  S  K  R  F  R  K  G  G  E  F  N  S  A  Y  T  R  G  Q  G  S  G  C  Y  S  V  R  P  I  *  S  S  L  Q  T  V  V  G  G  P  P  P  T  G  Q  H  F  S  E  R  P  M  H  E  P  R  E  C  Y  G  C  G  E  I  G  H  I  K  R  Y  C  P  K  Q  S  Y  R  P  P  N  V  R  G  R  G  G  H  G  R  G  C  Y  S  G  G  R  G  G  R  G  N  G  G  H  Q  N  G  R  G  D  G  Q  T  G  A  T  T  S  Q  Q  G  R  G  N  G  Q  T  N  D  R  A  H  C  Y  A  F  P  G  R  S  E  A  E  A  S  D  A  V  I  T  G  N  L  L  V  C  D  C  M  T  S  V  L  F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  N  G  L  T  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  V  V  E  K  V  Y  R  S  C  L  V  N  F  V  G  S  N  T  Y  V  D  L  V  I  L  E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  M  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  L  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  K  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  K  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  </second_frame>
            <third_frame>   E  Q  R  Q  G  V  V  V  E  V  V  G  G  R  P  L  G  E  E  D  E  R  L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  G  A  R  H  P  Q  C  F  L  Q  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  L  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  I  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  I  C  V  S  V  H  K  S  E  F  A  G  L  *  R  G  *  G  Q  N  C  E  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  R  W  *  T  L  *  *  K  W  K  E  *  S  Q  T  T  S  P  R  H  R  H  Q  K  G  F  E  R  E  V  S  L  I  V  L  T  L  E  D  R  V  R  D  V  T  Q  S  D  Q  F  S  L  H  Y  R  L  *  L  G  V  H  L  R  P  V  N  T  S  L  R  D  L  C  M  N  P  E  S  A  M  D  V  G  R  L  D  I  L  R  D  I  V  Q  N  R  V  T  D  L  Q  M  L  E  V  E  V  V  M  A  E  A  V  I  L  E  D  V  V  V  E  E  M  V  V  T  K  T  A  E  V  M  G  K  L  E  P  L  H  H  N  K  V  G  A  T  D  R  R  T  I  G  P  I  V  T  L  S  L  G  G  L  K  R  R  H  L  M  L  S  S  Q  V  I  F  W  F  V  I  A  *  L  L  Y  C  L  I  L  D  P  H  F  L  M  Y  L  P  H  L  L  M  V  *  L  Y  I  V  N  Y  L  I  C  L  F  V  F  L  L  R  W  V  S  L  W  *  L  K  R  C  I  G  L  V  W  *  T  L  W  G  A  T  L  M  *  I  W  L  S  *  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  W  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  *  C  L  R  L  S  R  F  Q  *  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  S  I  S  N  R  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  Q  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T  D  N  *  T  R  *  P  *  R  T  S  I  L  F  P  A  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53538" stop="54710"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLQTVVGGPPPTGQHFSERPMHEPRECYGCGEIGHIKRYCPKQSYRPPNVRGRGGHGRGCYSGGRGGRGNGGHQNGRGDGQTGATTSQQGRGNGQTNDRAHCYAFPGRSEAEASDAVITGNLLVCDCMTSVLFDPGSTFSYVSSSFANGLTLHCELLDMPIRVSTPVGESVVVEKVYRSCLVNFVGSNTYVDLVILEMDDFDVILGMTWLSPQFAILDCNAKMVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTLVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLKPGTRPISIPPYRMAPAELRKLKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDYRQLNKVTIKNKYPLPRID</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52521" stop="53054"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTAARGRGRGRGRTSSRGRGRAPSPSDTRAVTPPPTEEVIREGEDGETEQVQNEGLPPQPTPEMINQVLAYLSGLSDRGQTPPVFSAAAPQAPEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53055" stop="53537"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQGNAKMWWRSHIECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFRALSWYATHLCFSPQERICRFVKGLRSELRISALQIAATTKSFQEVVDFVIEVEGVKPDDFTPTSTSKRFRKGGEFNSAYTRGQGSGCYSVRPI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52538" e_stop="53385"/>
            <exon e_start="54130" e_stop="54658"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.911"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="52538" e_stop="53385" e_length="848"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53386" i_stop="54129" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="54130" e_stop="54658" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52538" stop="53290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52584" stop="53139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53185" stop="53385"/>
              <exon start="54130" stop="54658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATAGGGGCCAGACACCCCCAGTGTTTTCTGCAGCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTTACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCTGGTATGCCACCCATCTGTGTTTCAGTCCACAAGAGCGAATTTGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGAATTTCGGCCTTACAGATAGCGGCAACGACAAAATCCTTCCAAG : AAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCTAGTGCCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCAAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAAAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAG</gDNA_template>
            <first_frame> S  W  *  R  S  W  E  D  V  L  *  G  K  R  T  S  A  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  *  G  P  D  T  P  S  V  F  C  S  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  Y  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  *  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  L  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  L  V  C  H  P  S  V  F  Q  S  T  R  A  N  L  P  V  C  E  G  V  E  V  R  I  A  N  F  G  L  T  D  S  G  N  D  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  A  F  D  *  V  G  F  S  S  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  R  S  Q  T  G  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  R  V  K  K  V  K  G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L  Q </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  R  G  Q  T  P  P  V  F  S  A  A  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  *  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  W  Y  A  T  H  L  C  F  S  P  Q  E  R  I  C  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  T  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  M  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  L  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  K  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  K  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y   </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  G  E  E  D  E  R  L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  G  A  R  H  P  Q  C  F  L  Q  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  L  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  I  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  I  C  V  S  V  H  K  S  E  F  A  G  L  *  R  G  *  G  Q  N  C  E  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  W  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  *  C  L  R  L  S  R  F  Q  *  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  S  I  S  N  R  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  Q  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53055" stop="53385"/>
                    <exon start="54130" stop="54656"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQGNAKMWWRSHIECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFRALSWYATHLCFSPQERICRFVKGLRSELRISALQIAATTKSFQEMDDFDVILGMTWLSPQFAILDCNAKMVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTLVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLKPGTRPISIPPYRMAPAELRKLKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52539" stop="53054"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRAPSPSDTRAVTPPPTEEVIREGEDGETEQVQNEGLPPQPTPEMINQVLAYLSGLSDRGQTPPVFSAAAPQAPEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="52538" e_stop="53422"/>
            <exon e_start="54538" e_stop="55101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.910"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="52538" e_stop="53422" e_length="885"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53423" i_stop="54537" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="54538" e_stop="55101" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52538" stop="53290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52550" stop="53422"/>
              <exon start="54538" stop="55101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52584" stop="53139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATAGGGGCCAGACACCCCCAGTGTTTTCTGCAGCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTTACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATTAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCTGGTATGCCACCCATCTGTGTTTCAGTCCACAAGAGCGAATTTGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGAATTTCGGCCTTACAGATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAA : AGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATGACTTGTTTGATCAGTTACAAAGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAACGGGATTTTTTAGCCATATTTGGACCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</gDNA_template>
            <first_frame> S  W  *  R  S  W  E  D  V  L  *  G  K  R  T  S  A  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  *  G  P  D  T  P  S  V  F  C  S  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  Y  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  *  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  L  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  L  V  C  H  P  S  V  F  Q  S  T  R  A  N  L  P  V  C  E  G  V  E  V  R  I  A  N  F  G  L  T  D  S  G  N  D  K  I  L  P  R  G  G  R  L  C  D  R  S  G  R  S  E  :  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T  D  N  *  T  R  *  P  *  R  T  S  I  L  F  P  A  L  M  T  C  L  I  S  Y  K  V  L  V  S  S  L  R  L  T  *  D  P  V  I  I  N  *  K  Y  G  Q  R  M  C  Q  R  L  L  F  E  R  G  M  G  I  T  N  L  *  *  C  L  L  V  L  R  M  P  L  L  R  S  *  A  *  *  T  G  F  F  S  H  I  W  T  S  S  *  S  Y  L  L  M  I  Y  W  Y  T  Q  R  A  R  R  N  M  K  S  I  *  E  W  Y  W  K  C  *  G  R  K  S  F  M  P  S  S  L  S  V  S  F  G  *  M  Q  C  P  S  W  G  T  W  F  L </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  R  G  Q  T  P  P  V  F  S  A  A  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  *  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  W  Y  A  T  H  L  C  F  S  P  Q  E  R  I  C  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  T  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K :   G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L  Q  T  T  K  Q  G  N  H  K  E  Q  V  S  S  S  P  H  *  *  L  V  *  S  V  T  K  C  L  C  L  L  *  D  *  L  E  I  R  L  S  S  I  E  N  T  G  N  G  C  A  K  D  C  F  S  N  E  V  W  A  L  R  I  C  S  D  V  F  W  S  Y  E  C  P  C  C  V  H  E  L  D  E  R  D  F  L  A  I  F  G  P  L  R  D  R  I  Y  *  *  Y  I  G  I  L  K  E  Q  E  G  T  *  R  A  F  E  N  G  I  G  N  V  E  G  E  K  A  L  C  Q  V  L  *  V  *  V  L  A  R  C  S  V  L  L  G  A  R  G  F   </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  G  E  E  D  E  R  L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  G  A  R  H  P  Q  C  F  L  Q  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  L  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  I  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  I  C  V  S  V  H  K  S  E  F  A  G  L  *  R  G  *  G  Q  N  C  E  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  R  W  *  T  L  *  *  K  W  K  E  *   : K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  D  L  F  D  Q  L  Q  S  A  C  V  F  S  K  I  D  L  R  S  G  Y  H  Q  L  K  I  R  A  T  D  V  P  K  T  A  F  R  T  R  Y  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  A  P  A  A  F  M  S  L  M  N  G  I  F  *  P  Y  L  D  L  F  V  I  V  F  I  D  D  I  L  V  Y  S  K  S  K  K  E  H  E  E  H  L  R  M  V  L  E  M  L  R  E  K  K  L  Y  A  K  F  S  K  C  E  F  W  L  D  A  V  S  F  L  G  H  V  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52539" stop="53054"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRAPSPSDTRAVTPPPTEEVIREGEDGETEQVQNEGLPPQPTPEMINQVLAYLSGLSDRGQTPPVFSAAAPQAPEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53055" stop="53422"/>
                    <exon start="54538" stop="54577"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQGNAKMWWRSHIECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFRALSWYATHLCFSPQERICRFVKGLRSELRISALQIAATTKSFQEVVDFVIEVEGVKGTTSRVIEQRLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="54027" PGL_stop="52520"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54027" e_stop="52520"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="54027" e_stop="52520" e_length="1508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54027" stop="52520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACAGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTAAATTGGTCGGACTGAGTAACATCCCGAACCCTGTCCTCTAGTGTAAGCACTATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGTCGTTGCCGCTATCTGTAAGGCCGAAATTCGCAATTCTGACCTCAACCCCTTCACAAACCGGCAAATTCGCTCTTGTGGACTGAAACACAGATGGGTGGCATACCAGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTAATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTAAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGCTGCAGAAAACACTGGGGGTGTCTGGCCCCTATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGCGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGACCCCTTGCCGCTGTTCTT</gDNA_template>
            <first_frame> H  E  *  A  Y  Q  V  I  H  N  V  K  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  S  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  P  Y  L  V  V  M  *  W  L  Q  F  A  H  H  L  G  R  F  G  D  H  H  F  L  D  H  H  V  L  Q  N  N  S  L  C  H  D  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  K  L  V  G  L  S  N  I  P  N  P  V  L  *  C  K  H  Y  *  T  H  L  P  F  E  T  F  L  M  S  M  S  G  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  S  L  P  L  S  V  R  P  K  F  A  I  L  T  S  T  P  S  Q  T  G  K  F  A  L  V  D  *  N  T  D  G  W  H  T  R  I  M  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  N  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  Y  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  P  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  *  D  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  P  E  P  E  V  L  L  Q  K  T  L  G  V  S  G  P  Y  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  A  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  D  P  L  P  L  F   </first_frame>
            <second_frame>  T  N  R  H  I  K  *  F  T  M  *  S  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  L  L  *  C  S  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  S  S  T  T  T  S  S  R  I  T  A  S  A  M  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  S  L  N  M  S  N  L  P  T  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  S  Q  F  *  P  Q  P  L  H  K  P  A  N  S  L  L  W  T  E  T  Q  M  G  G  I  P  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  M  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  R  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  K  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  C  C  R  K  H  W  G  C  L  A  P  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  R  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  T  P  C  R  C  S  </second_frame>
            <third_frame>   R  I  G  I  S  S  N  S  Q  C  K  V  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  V  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  F  P  R  P  P  R  P  P  E  *  Q  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  I  C  P  I  S  P  H  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  H  P  E  P  C  P  L  V  *  A  L  L  N  S  P  P  F  R  N  L  F  D  V  D  V  G  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  V  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  Q  I  R  S  C  G  L  K  H  R  W  V  A  Y  Q  D  N  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  A  A  A  E  N  T  G  G  V  W  P  L  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53488" stop="53099"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLNSPPFRNLFDVDVGVKSSGFTPSTSITKSTTSWKDFVVAAICKAEIRNSDLNPFTNRQIRSCGLKHRWVAYQDNARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53798" stop="53544"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAVLVTTISSTTTSSRITASAMTTSTSNIWRSVTLFWTISLNMSNLPTSIALSGFMHRSLREVLTGRRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52997" stop="52743"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIVSILRFRTLEDWRFQFQELTEKFMLIICHYRPSSKTWKRAYFQWNIHAGSHSSRMLYLRSLRCCCRKHWGCLAPIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52742" stop="52521"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWQSLILHLFSFPILPFSYYFLSRWRSHCPSIRWARRSSSSPRGRPPTTSTTTPCRCS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="55230" PGL_stop="54418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55230" e_stop="54418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="55230" e_stop="54418" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55230" stop="54418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACAAATCGATGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTAAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACTTTGTAACTGATCAAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTTTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTTGAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTG</gDNA_template>
            <first_frame> R  I  P  *  Q  I  D  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  K  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  F  V  T  D  Q  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  F  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  P  V  *  D  R  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L </first_frame>
            <second_frame>  E  S  L  D  K  S  M  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  K  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  R  F  E  I  D  T  E  V  N  I  P  I  W  W  H  T  R  K  I   </second_frame>
            <third_frame>   N  P  L  T  N  R  W  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  *  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  L  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  C  A  F  N  F  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  L  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54965" stop="54726"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKRHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="56495" PGL_stop="56003"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56495" e_stop="56003"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="56495" e_stop="56003" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56495" stop="56003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCAATTCCGCCTGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGCACCTCTATCTGATATGATGGATAGTGGAATCCCATGCAATCGAACGATTTCTGAGATATAGATCTTGGCTAACTTCTCTGCATTGTAAGTCACCTTTACCGGAATGAAATGAGGAGATTTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCATTGTCCTTGGAAGACCAACCACAAAGTCCATTGCAGTTCTTTCCCACTTCCATTTCGGAATGGGCGTTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAAAGTCAACAATATCACGCTTCATTCTGCTCCACCAAAAGTGTTGTTTTAGGTCACGATACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTATCAGAATAGTGTTGATCAAATCATCGACGCGGGGT</gDNA_template>
            <first_frame> Y  Q  F  R  L  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  *  W  N  P  M  Q  S  N  D  F  *  D  I  D  L  G  *  L  L  C  I  V  S  H  L  Y  R  N  E  M  R  R  F  S  *  P  I  N  N  H  P  N  G  V  I  L  T  H  C  P  W  K  T  N  H  K  V  H  C  S  S  F  P  L  P  F  R  N  G  R  S  L  K  C  S  S  G  P  L  V  F  I  L  Y  L  L  T  V  W  T  L  G  N  K  V  N  N  I  T  L  H  S  A  P  P  K  V  L  F  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  Y  Q  N  S  V  D  Q  I  I  D  A  G  </first_frame>
            <second_frame>  T  N  S  A  C  N  V  F  Q  N  L  E  V  N  C  A  P  L  S  D  M  M  D  S  G  I  P  C  N  R  T  I  S  E  I  *  I  L  A  N  F  S  A  L  *  V  T  F  T  G  M  K  *  G  D  L  V  N  L  S  T  I  T  Q  M  E  S  Y  L  P  I  V  L  G  R  P  T  T  K  S  I  A  V  L  S  H  F  H  F  G  M  G  V  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  L  A  I  K  S  T  I  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  I  R  I  V  L  I  K  S  S  T  R  G </second_frame>
            <third_frame>   P  I  P  P  A  M  F  S  K  T  *  K  *  T  A  H  L  Y  L  I  *  W  I  V  E  S  H  A  I  E  R  F  L  R  Y  R  S  W  L  T  S  L  H  C  K  S  P  L  P  E  *  N  E  E  I  *  L  T  Y  Q  Q  S  P  K  W  S  H  T  Y  P  L  S  L  E  D  Q  P  Q  S  P  L  Q  F  F  P  T  S  I  S  E  W  A  F  S  E  V  F  L  R  A  F  G  V  H  T  L  L  V  D  S  L  D  T  W  Q  *  S  Q  Q  Y  H  A  S  F  C  S  T  K  S  V  V  L  G  H  D  T  S  W  L  H  P  D  V  *  N  T  L  N  Y  E  P  L  S  E  *  C  *  S  N  H  R  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56321" stop="56097"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNHPNGVILTHCPWKTNHKVHCSSFPLPFRNGRSLKCSSGPLVFILYLLTVWTLGNKVNNITLHSAPPKVLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="56709" PGL_stop="56533"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56709" e_stop="56533"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="56709" e_stop="56533" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56709" stop="56533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  P  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0132C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="58180" PGL_stop="58888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58180" e_stop="58475"/>
            <exon e_start="58663" e_stop="58888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.932"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="58180" e_stop="58475" e_length="296"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58476" i_stop="58662" i_length="187"/>
          </intron>
          <exon e_serial="2" e_score="0.916">
            <gDNA_exon_boundary e_start="58663" e_stop="58888" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58180" stop="58475"/>
              <exon start="58663" stop="58888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593741" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACCCTAATCTACTTTGTTAATGATGATGCCTTGCTATAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGAATAGTATATGAGGATCGGAGTGTCACGTTCCAACATCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAG : TATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTGGAAAGATGTTAATATATTCAATCTAATGAACCTAATTCCCAAATGAGTATGATGATGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</gDNA_template>
            <first_frame> K  P  *  S  T  L  L  M  M  M  P  C  Y  K  E  G  L  M  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  N  S  I  *  G  S  E  C  H  V  P  T  S  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  S :   I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  R  C  *  Y  I  Q  S  N  E  P  N  S  Q  M  S  M  M  M  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T </first_frame>
            <second_frame>  N  P  N  L  L  C  *  *  *  C  L  A  I  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  Q  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  *  G  S  E  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I   : V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  W  K  D  V  N  I  F  N  L  M  N  L  I  P  K  *  V  *  *  *  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </second_frame>
            <third_frame>   T  L  I  Y  F  V  N  D  D  A  L  L  *  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  E  *  Y  M  R  I  G  V  S  R  S  N  I  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  E  D  R  S  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  :  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  G  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  D  D  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58327" stop="58475"/>
                    <exon start="58663" stop="58732"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YMDRVPRSGTRIEYGSGVTFRHQDRMRIGVSRSDTRIVYGSGATFRYQDSILRSGVSRTDTRGIKIMNLERC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="63692" PGL_stop="64321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63692" e_stop="64321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="63692" e_stop="64321" e_length="630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63692" stop="64321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCTTACTTGAGTATTGCAGATGAAACAAACCATGTGACCTAGTAGAGGTACCAGGCTCTCATGGTGACGAGCCAGTTGACTGCTAGCTGGAGACGGAACAGAAAGTAGGTGCACACTTACCGATGGCGTCAGAAAGTAAGACTTCTCCAATCAATGTCAAAGAGTTTAAGGAAAGTGACTTGTCCATATAAAAGGCACTTTCCTAAACATCTTTGGCAGTTTTTGCAACTTGAGATAAAACTCTTCAAGAACATTTGCAAAGGCTGCTAGTAAACAAAGGCAGAATTATTCCAAGAACAATAGCAATCTCTGGAGCTTTTCGTGTAGTTGTTTAGGAATACATTCTCTTGTTTTTAAACTGTAAACTATTCCTGAATCTATAAAGGAATCAGTGTGTAGTGTTAAAAGTCTAGGTTGTCCAAGTGGGATAGCCTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTAAGCAATAGAAACTATTGCTTAAACGTGAGATTAAAAACTTCATCTCACATTTGTTGTAATCTTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAAGGATTGAAAATCCTCTGAGACAGGTCGTGGTTCTACTCCCTTAAGTAAGGAGGTTTCCACGTAAA</gDNA_template>
            <first_frame> V  S  Y  L  S  I  A  D  E  T  N  H  V  T  *  *  R  Y  Q  A  L  M  V  T  S  Q  L  T  A  S  W  R  R  N  R  K  *  V  H  T  Y  R  W  R  Q  K  V  R  L  L  Q  S  M  S  K  S  L  R  K  V  T  C  P  Y  K  R  H  F  P  K  H  L  W  Q  F  L  Q  L  E  I  K  L  F  K  N  I  C  K  G  C  *  *  T  K  A  E  L  F  Q  E  Q  *  Q  S  L  E  L  F  V  *  L  F  R  N  T  F  S  C  F  *  T  V  N  Y  S  *  I  Y  K  G  I  S  V  *  C  *  K  S  R  L  S  K  W  D  S  L  V  G  R  L  F  S  T  *  A  C  *  A  I  E  T  I  A  *  T  *  D  *  K  L  H  L  T  F  V  V  I  L  F  Y  F  C  F  *  R  L  V  K  R  I  E  N  P  L  R  Q  V  V  V  L  L  P  *  V  R  R  F  P  R  K </first_frame>
            <second_frame>  F  L  T  *  V  L  Q  M  K  Q  T  M  *  P  S  R  G  T  R  L  S  W  *  R  A  S  *  L  L  A  G  D  G  T  E  S  R  C  T  L  T  D  G  V  R  K  *  D  F  S  N  Q  C  Q  R  V  *  G  K  *  L  V  H  I  K  G  T  F  L  N  I  F  G  S  F  C  N  L  R  *  N  S  S  R  T  F  A  K  A  A  S  K  Q  R  Q  N  Y  S  K  N  N  S  N  L  W  S  F  S  C  S  C  L  G  I  H  S  L  V  F  K  L  *  T  I  P  E  S  I  K  E  S  V  C  S  V  K  S  L  G  C  P  S  G  I  A  *  W  V  D  C  F  L  L  R  L  V  K  Q  *  K  L  L  L  K  R  E  I  K  N  F  I  S  H  L  L  *  S  C  F  T  F  A  F  E  D  *  *  K  G  L  K  I  L  *  D  R  S  W  F  Y  S  L  K  *  G  G  F  H  V   </second_frame>
            <third_frame>   F  L  L  E  Y  C  R  *  N  K  P  C  D  L  V  E  V  P  G  S  H  G  D  E  P  V  D  C  *  L  E  T  E  Q  K  V  G  A  H  L  P  M  A  S  E  S  K  T  S  P  I  N  V  K  E  F  K  E  S  D  L  S  I  *  K  A  L  S  *  T  S  L  A  V  F  A  T  *  D  K  T  L  Q  E  H  L  Q  R  L  L  V  N  K  G  R  I  I  P  R  T  I  A  I  S  G  A  F  R  V  V  V  *  E  Y  I  L  L  F  L  N  C  K  L  F  L  N  L  *  R  N  Q  C  V  V  L  K  V  *  V  V  Q  V  G  *  P  S  G  *  I  V  F  Y  L  G  L  L  S  N  R  N  Y  C  L  N  V  R  L  K  T  S  S  H  I  C  C  N  L  V  L  L  L  L  L  K  I  S  E  K  D  *  K  S  S  E  T  G  R  G  S  T  P  L  S  K  E  V  S  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0132C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="70627" PGL_stop="70302"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70627" e_stop="70302"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="70627" e_stop="70302" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70627" stop="70302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCTAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTTCCCATAAAAGTCACAAGACAAGACCTATACACCTTTTCGACTATCACAGACTCACCCACCAGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGAAAATGAGGAAGATACATATGAAAATGTGGAGCCAGGGTCAAATAATACAGAAGCCATACAATCAC</gDNA_template>
            <first_frame> R  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  R  K  P  S  H  T  *  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  S  H  K  S  H  K  T  R  P  I  H  L  F  D  Y  H  R  L  T  H  Q  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  S  R  K  *  G  R  Y  I  *  K  C  G  A  R  V  K  *  Y  R  S  H  T  I   </first_frame>
            <second_frame>  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  R  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  V  E  N  E  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  I  Q  S  </second_frame>
            <third_frame>   D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  L  Q  N  L  E  K  A  K  S  Y  L  E  L  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  F  P  *  K  S  Q  D  K  T  Y  T  P  F  R  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  K  M  R  K  I  H  M  K  M  W  S  Q  G  Q  I  I  Q  K  P  Y  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70494" stop="70303"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPIKVTRQDLYTFSTITDSPTRVETRIGMSSNSQCKLRPVENEEDTYENVEPGSNNTEAIQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="70324" PGL_stop="70962"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70324" e_stop="70962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="70324" e_stop="70962" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70324" stop="70962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTGACCCTGGCTCCACATTTTCATATGTATCTTCCTCATTTTCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCTGGTGGGTGAGTCTGTGATAGTCGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTATGGGAAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTAGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCTGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGATGGTTAGTAAGGTTTGTTTAGCTTTCTTGGCACGCCTCAGGGATGATACCACCCAAGTACCTTCAATTGAGTCGGTTTTGATAGTCCGCGAGTTTCTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCTCAACTTCAAGAGTTGTTGAGCAAAGACTTCATT</gDNA_template>
            <first_frame> I  *  P  W  L  H  I  F  I  C  I  F  L  I  F  Y  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  R  K  G  V  *  V  L  S  C  D  F  Y  G  K  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  L  R  C  N  S  R  Y  D  L  A  F  S  K  F  C  N  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  C  S  Y  H  L  L  S  S  C  *  E  M  V  S  K  V  C  L  A  F  L  A  R  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  L  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  D  F  I </first_frame>
            <second_frame>  F  D  P  G  S  T  F  S  Y  V  S  S  S  F  S  T  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  L  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  M  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  R  W  L  V  R  F  V  *  L  S  W  H  A  S  G  M  I  P  P  K  Y  L  Q  L  S  R  F  *  *  S  A  S  F  *  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  T  S  A  S  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  R  L  N  F  K  S  C  *  A  K  T  S   </second_frame>
            <third_frame>   L  T  L  A  P  H  F  H  M  Y  L  P  H  F  L  L  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  W  W  V  S  L  *  *  S  K  R  C  I  G  L  V  L  *  L  L  W  E  A  I  L  M  *  T  W  L  S  *  K  W  L  T  S  M  *  F  *  V  *  L  G  F  L  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  L  F  V  S  S  P  F  F  V  L  R  D  G  *  *  G  L  F  S  F  L  G  T  P  Q  G  *  Y  H  P  S  T  F  N  *  V  G  F  D  S  P  R  V  S  R  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  R  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  *  V  K  G  V  K  G  S  T  S  R  V  V  E  Q  R  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70325" stop="70714"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFSTGLNLHCELLDMPIRVSTLVGESVIVEKVYRSCLVTFMGSNTHVDLVILEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKRWLVRFV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70690" stop="70962"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMVSKVCLAFLARLRDDTTQVPSIESVLIVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKDFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="85976" PGL_stop="87408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85976" e_stop="86105"/>
            <exon e_start="86180" e_stop="86316"/>
            <exon e_start="86617" e_stop="87408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.976" e_score="0.946"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="85976" e_stop="86105" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.976">
            <gDNA_intron_boundary i_start="86106" i_stop="86179" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86180" e_stop="86316" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86317" i_stop="86616" i_length="300"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="86617" e_stop="87408" e_length="792"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85976" stop="86105"/>
              <exon start="86180" stop="86316"/>
              <exon start="86617" stop="87408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579267" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGCAAGATTGTACAGAATAGATTTGGAAATGATCAACACATCAACAAATGGAGAGATGGATTATTCTGATTTGAAAGCAAAATTGCTTCATAACAAGGACAAACCAGCAATTATAAATATTAATATTG : GAACTACATTCAAAGGGGCTATGGATGACATTGATGTTATTCTTCAAACACTTGAAGATTGTGGTTATTCCCATGATAAGTTTTATATCCATTGTGATGCAGCCCTCAATGGACTTATTGTCCCTTTCACTAAAAAT : GTGATTAGCTTCAAGAAGCCAATTGGGAGTGTCACAATTTCAGGTCACAAGTTCATAGGATGTCCAATTCCTTGTGGAGTTCAAATAACAAGAAAAAGTCACATCGGTTATCTCTCAAGAAATGTCGAATACATTGCTTCTATGGATGCCACAATTTCTGGAAGTCGAAATGGCTTAACTCCAATTTTGTTGTGGTACAGTTTAAGCTCTAAAGGTCAAATTGGGATACAACAAGATGTTAAGAGATGCCTCAACAACGCTAGATATTTAAGAGATCGTCTTAAGCAAGCAAATATTAGTGTCATGCTTAATGAGTTGAGTACTATAGTTGTGCTTGAGAGGCCTCATGATCATGAGTTTACTCGTCATTGGCAACTCTCTTGCGTGAAGGATATTGCACATGTAATTGTTATGCCAAGTATCACAAGAGAAACATTGGACGATTTCTTCATTGATTTGGTGCAAAAAAGAAAAATGTGGTACCAAGATGGAAGCGTTAAGCCTCCTTGTGTTGCAGATGATATTGGTGCTCAAAATTGTGCATGCGCTCTTCATAATGGTCAATATATATTCCTTTAAGGAAACAAACTCCCTATCGTCTAGATGATGAAATTCAGCTTCAATGTGCTACAATTGGATGGAATTATAGGTTCTTTTCATGTTCTTGTAGAATCTTTTTTTGTCTATGCTACATAATTTGTGATTTCAAACTAGTTAAGTTGGTTGTATGACGTCCATATGTAGATTGTCTAATTAATCAATAAATAAATTAAGGACTTCATGTTAAGTTGT</gDNA_template>
            <first_frame> A  A  R  L  Y  R  I  D  L  E  M  I  N  T  S  T  N  G  E  M  D  Y  S  D  L  K  A  K  L  L  H  N  K  D  K  P  A  I  I  N  I  N  I   : G  T  T  F  K  G  A  M  D  D  I  D  V  I  L  Q  T  L  E  D  C  G  Y  S  H  D  K  F  Y  I  H  C  D  A  A  L  N  G  L  I  V  P  F  T  K  N  :  V  I  S  F  K  K  P  I  G  S  V  T  I  S  G  H  K  F  I  G  C  P  I  P  C  G  V  Q  I  T  R  K  S  H  I  G  Y  L  S  R  N  V  E  Y  I  A  S  M  D  A  T  I  S  G  S  R  N  G  L  T  P  I  L  L  W  Y  S  L  S  S  K  G  Q  I  G  I  Q  Q  D  V  K  R  C  L  N  N  A  R  Y  L  R  D  R  L  K  Q  A  N  I  S  V  M  L  N  E  L  S  T  I  V  V  L  E  R  P  H  D  H  E  F  T  R  H  W  Q  L  S  C  V  K  D  I  A  H  V  I  V  M  P  S  I  T  R  E  T  L  D  D  F  F  I  D  L  V  Q  K  R  K  M  W  Y  Q  D  G  S  V  K  P  P  C  V  A  D  D  I  G  A  Q  N  C  A  C  A  L  H  N  G  Q  Y  I  F  L  *  G  N  K  L  P  I  V  *  M  M  K  F  S  F  N  V  L  Q  L  D  G  I  I  G  S  F  H  V  L  V  E  S  F  F  V  Y  A  T  *  F  V  I  S  N  *  L  S  W  L  Y  D  V  H  M  *  I  V  *  L  I  N  K  *  I  K  D  F  M  L  S  C </first_frame>
            <second_frame>  L  Q  D  C  T  E  *  I  W  K  *  S  T  H  Q  Q  M  E  R  W  I  I  L  I  *  K  Q  N  C  F  I  T  R  T  N  Q  Q  L  *  I  L  I  L  :  E  L  H  S  K  G  L  W  M  T  L  M  L  F  F  K  H  L  K  I  V  V  I  P  M  I  S  F  I  S  I  V  M  Q  P  S  M  D  L  L  S  L  S  L  K  M :   *  L  A  S  R  S  Q  L  G  V  S  Q  F  Q  V  T  S  S  *  D  V  Q  F  L  V  E  F  K  *  Q  E  K  V  T  S  V  I  S  Q  E  M  S  N  T  L  L  L  W  M  P  Q  F  L  E  V  E  M  A  *  L  Q  F  C  C  G  T  V  *  A  L  K  V  K  L  G  Y  N  K  M  L  R  D  A  S  T  T  L  D  I  *  E  I  V  L  S  K  Q  I  L  V  S  C  L  M  S  *  V  L  *  L  C  L  R  G  L  M  I  M  S  L  L  V  I  G  N  S  L  A  *  R  I  L  H  M  *  L  L  C  Q  V  S  Q  E  K  H  W  T  I  S  S  L  I  W  C  K  K  E  K  C  G  T  K  M  E  A  L  S  L  L  V  L  Q  M  I  L  V  L  K  I  V  H  A  L  F  I  M  V  N  I  Y  S  F  K  E  T  N  S  L  S  S  R  *  *  N  S  A  S  M  C  Y  N  W  M  E  L  *  V  L  F  M  F  L  *  N  L  F  L  S  M  L  H  N  L  *  F  Q  T  S  *  V  G  C  M  T  S  I  C  R  L  S  N  *  S  I  N  K  L  R  T  S  C  *  V   </second_frame>
            <third_frame>   C  K  I  V  Q  N  R  F  G  N  D  Q  H  I  N  K  W  R  D  G  L  F  *  F  E  S  K  I  A  S  *  Q  G  Q  T  S  N  Y  K  Y  *  Y  W :   N  Y  I  Q  R  G  Y  G  *  H  *  C  Y  S  S  N  T  *  R  L  W  L  F  P  *  *  V  L  Y  P  L  *  C  S  P  Q  W  T  Y  C  P  F  H  *  K   : C  D  *  L  Q  E  A  N  W  E  C  H  N  F  R  S  Q  V  H  R  M  S  N  S  L  W  S  S  N  N  K  K  K  S  H  R  L  S  L  K  K  C  R  I  H  C  F  Y  G  C  H  N  F  W  K  S  K  W  L  N  S  N  F  V  V  V  Q  F  K  L  *  R  S  N  W  D  T  T  R  C  *  E  M  P  Q  Q  R  *  I  F  K  R  S  S  *  A  S  K  Y  *  C  H  A  *  *  V  E  Y  Y  S  C  A  *  E  A  S  *  S  *  V  Y  S  S  L  A  T  L  L  R  E  G  Y  C  T  C  N  C  Y  A  K  Y  H  K  R  N  I  G  R  F  L  H  *  F  G  A  K  K  K  N  V  V  P  R  W  K  R  *  A  S  L  C  C  R  *  Y  W  C  S  K  L  C  M  R  S  S  *  W  S  I  Y  I  P  L  R  K  Q  T  P  Y  R  L  D  D  E  I  Q  L  Q  C  A  T  I  G  W  N  Y  R  F  F  S  C  S  C  R  I  F  F  C  L  C  Y  I  I  C  D  F  K  L  V  K  L  V  V  *  R  P  Y  V  D  C  L  I  N  Q  *  I  N  *  G  L  H  V  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85976" stop="86105"/>
                    <exon start="86180" stop="86316"/>
                    <exon start="86617" stop="87195"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AARLYRIDLEMINTSTNGEMDYSDLKAKLLHNKDKPAIININIGTTFKGAMDDIDVILQTLEDCGYSHDKFYIHCDAALNGLIVPFTKNVISFKKPIGSVTISGHKFIGCPIPCGVQITRKSHIGYLSRNVEYIASMDATISGSRNGLTPILLWYSLSSKGQIGIQQDVKRCLNNARYLRDRLKQANISVMLNELSTIVVLERPHDHEFTRHWQLSCVKDIAHVIVMPSITRETLDDFFIDLVQKRKMWYQDGSVKPPCVADDIGAQNCACALHNGQYIFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="92744" PGL_stop="93383"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92744" e_stop="93383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="92744" e_stop="93383" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92744" stop="93383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586115" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCATTTTGGGTCCTTCCCGACCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCTGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAATTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCTAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGATACATTCAGTCCTGTTATTCGGAAGGAAACCATTCGCCTGGTATTGTCACTCGCCGTGTGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCG</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  I  L  G  P  S  R  P  P  P  N  H  H  R  P  C  H  P  P  I  L  I  P  C  *  P  V  A  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  L  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  F  G  F  L  Y  L  S  P  M  G  G  T  *  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  P  I  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  D  H  P  R  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  *  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  R  Y  I  Q  S  C  Y  S  E  G  N  H  S  P  G  I  V  T  R  R  V  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  H  F  G  S  F  P  T  T  P  E  S  P  P  P  V  P  P  P  N  T  H  P  M  L  T  R  G  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  I  W  V  L  V  P  K  P  H  G  R  H  L  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  D  T  F  S  P  V  I  R  K  E  T  I  R  L  V  L  S  L  A  V  C  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0132C12.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92746" stop="93381"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPEPPHTHNISSPIHFGSFPTTPESPPPVPPPNTHPMLTRGKAGIFKPKTFQATILPNTPLPDSEPTTYSVASKNAYWRHAMDDEFKALTDQKIWVLVPKPHGRHLVGCKWVYKIKHNADGSISRYKARLVAKGYNQEYGLDYSDTFSPVIRKETIRLVLSLAVCNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVDP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="99812" PGL_stop="99338"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99812" e_stop="99338"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99812" e_stop="99338" e_length="475"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99812" stop="99338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATCTCTATCACCAAAATTGTATGAGTCAAAAAAATCTCGTCCTCTTTGAATACAAACAAAAACATAATAGGTTATGTATAACTACAACTTTTTATTCCTTCAGAACCTGTTGACTAAATGGTTTATATAAGGATTGGTATTGTGTTTTAACATGATTTGTGTTTTATTAAAGTTTTAATTCTTTGTTGACACTTTTGCTTGTCATTCTTTTTTGTGGTTTCAATTGTTTTTGCTAAACTATTATATTATTGCTTTAGTTTTAATATTTTGGATAACTCTAATTGTCTTGTTTAAATTAACATTAAATAAGAGTATGAAAATCTAAGTGTAGTTGGATGGAAAAATAATGCTTATTGACTGTTGTATCTTTTGTGTGATTTGCAACTCTAATTTCTTAAAGCTACTAGTATTGTTTTGTGTATGGCATGCTTCAACTTTGATTGGATTTCTCTAATCGTACCTCATTTTTAG</gDNA_template>
            <first_frame> E  N  L  Y  H  Q  N  C  M  S  Q  K  N  L  V  L  F  E  Y  K  Q  K  H  N  R  L  C  I  T  T  T  F  Y  S  F  R  T  C  *  L  N  G  L  Y  K  D  W  Y  C  V  L  T  *  F  V  F  Y  *  S  F  N  S  L  L  T  L  L  L  V  I  L  F  C  G  F  N  C  F  C  *  T  I  I  L  L  L  *  F  *  Y  F  G  *  L  *  L  S  C  L  N  *  H  *  I  R  V  *  K  S  K  C  S  W  M  E  K  *  C  L  L  T  V  V  S  F  V  *  F  A  T  L  I  S  *  S  Y  *  Y  C  F  V  Y  G  M  L  Q  L  *  L  D  F  S  N  R  T  S  F  L  </first_frame>
            <second_frame>  K  I  S  I  T  K  I  V  *  V  K  K  I  S  S  S  L  N  T  N  K  N  I  I  G  Y  V  *  L  Q  L  F  I  P  S  E  P  V  D  *  M  V  Y  I  R  I  G  I  V  F  *  H  D  L  C  F  I  K  V  L  I  L  C  *  H  F  C  L  S  F  F  F  V  V  S  I  V  F  A  K  L  L  Y  Y  C  F  S  F  N  I  L  D  N  S  N  C  L  V  *  I  N  I  K  *  E  Y  E  N  L  S  V  V  G  W  K  N  N  A  Y  *  L  L  Y  L  L  C  D  L  Q  L  *  F  L  K  A  T  S  I  V  L  C  M  A  C  F  N  F  D  W  I  S  L  I  V  P  H  F  * </second_frame>
            <third_frame>   K  S  L  S  P  K  L  Y  E  S  K  K  S  R  P  L  *  I  Q  T  K  T  *  *  V  M  Y  N  Y  N  F  L  F  L  Q  N  L  L  T  K  W  F  I  *  G  L  V  L  C  F  N  M  I  C  V  L  L  K  F  *  F  F  V  D  T  F  A  C  H  S  F  L  W  F  Q  L  F  L  L  N  Y  Y  I  I  A  L  V  L  I  F  W  I  T  L  I  V  L  F  K  L  T  L  N  K  S  M  K  I  *  V  *  L  D  G  K  I  M  L  I  D  C  C  I  F  C  V  I  C  N  S  N  F  L  K  L  L  V  L  F  C  V  W  H  A  S  T  L  I  G  F  L  *  S  Y  L  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0132C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 106 chains have been computed
$ 
$ memory statistics:
$ 107304 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 5647 bytes was the average size of a spliced alignment
$ 21152 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1510 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 125 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:54:21
-->
