<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:06:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577891" ref_strand="+" ref_description="SGN-E577891 [LE08BA04]">
      <seq>ttcgtttcaaaatacttcagctcttggaatctgggtactggaatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaatcttcgtaatcccacacttggtgagacttccccatcttccttcagcagcttctctacgctgccacctacggagcgtcaaaggcacgatggaccgtcataagctcagtaggtggtctcttctacattttttcgctcaaaatctctgctttcagctttggacagatttcctgcaaaataaagagaaacttataccaaaattagcacaaaaaggcttacggacacactaaacttaaggcaaaagtattaattataccgtgaaaccacggtatatcagggacatgaactcgaaggccattgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="1122" stop="2104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1422" g_stop="1805" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E577891" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1422" e_stop="1805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTACCAAATACTTCAACTCTTCGAATCTGGGTACTGGGATAACTTCTCTTATCTTCGCGACGAACTTGCAGGACGGACCGTCATATCCATGACGGACCGTCACAAGATTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTGTCTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCA-TTTTTCGCTCAAAATCTCCGCATTCAGCTTTAGACAGATTTCCTGCAAAACAAAGAAAAACTTATATAAAAATTAGCACAAAAAGGCTTACAGACACAATAAA-TTAAGGAAAAGGTATTAATTATACCGTGAAACCACGGTATATCAGGGG</genome_strand>
        <mrna_strand>TTCGTTTCAAAATACTTCAGCTCTTGGAATCTGGGTACTGGAATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAATCTTCGTAATCCCACACTTGGTGAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGAGCGTCAAAGGCACGATGGACCGTCATAAGCTCAGTAGGTGGTCTCTTCTACATTTTTTCGCTCAAAATCTCTGCTTTCAGCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATACCAAAATTAGCACAAAAAGGCTTACGGACACACTAAACTTAAGGCAAAAGTATTAATTATACCGTGAAACCACGGTATATCAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="19264" stop="17945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18964" g_stop="18245" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18964" e_stop="18245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCTTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAGGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGTCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCTGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGGAGCCTGAGATGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTTGTTCATTTTCCCCATCCTACCCTTCTCTTATTACCTCCTCAATCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="19261" stop="17998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18961" g_stop="18298" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18961" e_stop="18298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCTTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAGGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGTCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCTGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGGAGCCTGAGATGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTT-CCTCATTCTGCACTTGTTCATTTTCCCCATCCTACCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="19825" stop="18530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19525" g_stop="18828" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19525" e_stop="18828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCACAGGGAAAGCGTAACAATGGGCCCCATCGTTCGTCTGTCCGTTGCCCCTACCATGTTATGATGTAGTGGCTCCAGCTTGCCTATCACCTTGGCCGTTTTGGAGACCACGATTTCCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCCCCACATCCGTAACACTCTCTGGAGTCAAGCATAGGTCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCTTCCAACTACAGTCTGTAGTGAATACTGAATTGGTCGGACTGAGTAACTTCCCGAACCGTGTCCTCCAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAATGAAGTCGTCTGGCTTCACTCCTTCCCCTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCGGCTATCTGTAAGGCCGAAATCCGCAATGCTGACCTCAACCCCTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCTTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAGG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="19985" stop="18827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19685" g_stop="19127" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19685" e_stop="19127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAGTAGGCATATCAAGAAATTCACAATGTAAATGTAGACCATTAGCAAATGAGGAAGATACATAAGAAAAGGTGGATCCAAGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCTGCTTCAGACCGCACAGGGAAAGCGTAACAATGGGCCCCATCGTTCGTCTGTCCGTTGCCCCTACCATGTTATGATGTAGTGGCTCCAGCTTGCCTATCACCTTGGCCGTTTTGGAGACCACGATTTCCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCCCCACATCCGTAACACTCTCTGGAGTCAAGCATAGGTCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCTTCCAACTACAGTCTGTAGTGAATACTGAATTGGTCGGACTGAGTAACTTCCCGAACCGTGTCCTCCAGTGTAAGCACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="21113" stop="20155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20813" g_stop="20455" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20813" e_stop="20455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATAACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCATGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAATAGTAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="22665" stop="21883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22365" g_stop="22189" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22365" e_stop="22189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAAAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTAAGGCTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354383" ref_strand="+" ref_description="SGN-E354383 [cTOS-17-A14]">
      <seq>agattcgatggagaaagtgaagtctattcaagaaaagcttctagcggcgcaaagtagacaaaaagaatatgcagatcgaaaggttagagacttagagttcatggagggcgaacaagtcttgttgaaagtctcgccaatgaaaggggtgatgcggtttcgtaaaagaggtaagttaagtccaaggtatattggaccatttgaggtactaaagcgagtaggggaggtggcttatgaattagccttacctccagggctgtccggagtacatccggtatttcatgtatccatgttgaaaagataccatggagatggaaactacatcatccgttgggattcagtttcgcttggtgagaattggacttatgaggaggaaccagttgctattttagatagagaggttcgcaagttgaggtcgagagaaattgcatccatcaaagttcaatggaagaatcgaccggttgaagaagctacttgggagaaggaggcagatatgcaagaaaaatacccacatctgtttacagattcaggtactccttttcgccattgtttttcttcatttgatcgttcggggacgaacgatgggtaaattggtatctattgtaacgacctgtttagtcgttttgagcagcagattttaattctggaaaaactggccaagaccacgggcactgcgacggaccgtcacaggcacgacggcccgtcgaaggtgcatcgtttcagcatacttagaatttctgaatttggatatgaaaatcgactctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="22127" stop="51151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22426" g_stop="23188" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E354383" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22426" e_stop="23188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCGATAGAGAAAGTGAAGTCTATTCAAGAAAAGATTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGTGAGCAAGTCTTGTTGAAAGTTTCACCAATGAAAGGGGTGATGCGGTTTGGAAAAAGGGGGAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTACATCCGGTATTACATGTGTCGATGTTAAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAACCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCCGTTGAAGAATCTACTTGGGAGAAGGAGGCGGATATGCGAGAAAAATACCCACATCTGTTTACAGATTCAAGTACTCCTTTTCGCCCTTGTTTTCCTTCTTTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAACAAATTTTAATTCTGGAAAAACTGGCAGAAGCGACGGACCCCATGACGGAGCGTCAAGGGCACGACGGACCGTCGCA-GAGTCTCGTTTCAAAACACTTAGAAAATTTGAAATTGGGTATTGAAAATCGACTCTCT</genome_strand>
        <mrna_strand>AGATTCGATGGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGCGAACAAGTCTTGTTGAAAGTCTCGCCAATGAAAGGGGTGATGCGGTTTCGTAAAAGAGGTAAGTTAAGTCCAAGGTATATTGGACCATTTGAGGTACTAAAGCGAGTAGGGGAGGTGGCTTATGAATTAGCCTTACCTCCAGGGCTGTCCGGAGTACATCCGGTATTTCATGTATCCATGTTGAAAAGATACCATGGAGATGGAAACTACATCATCCGTTGGGATTCAGTTTCGCTTGGTGAGAATTGGACTTATGAGGAGGAACCAGTTGCTATTTTAGATAGAGAGGTTCGCAAGTTGAGGTCGAGAGAAATTGCATCCATCAAAGTTCAATGGAAGAATCGACCGGTTGAAGAAGCTACTTGGGAGAAGGAGGCAGATATGCAAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCATTGTTTTTCTTCATTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTAATTCTGGAAAAACTGGCCAAGACCACGGGCACTGCGACGGACCGTCACAGGCACGACGGCCCGTCGAAGGTGCATCGTTTCAGCATACTTAGAATTTCTGAATTTGGATA-TGAAAATCGACTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="28011" stop="80305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28311" g_stop="28396" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28397" i_stop="28472" i_length="76">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28473" g_stop="28904" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="515" r_length="429" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28311" e_stop="28396"/>
          <exon e_start="28473" e_stop="28904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATTAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACAAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGAATATATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACATTCCGACACTAGGATAGAATATGGATCGGGTGCCACGTTCTGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTATCACGTACCGACACGATGGGAATAAAGATAATGAATCTTGAAAGATATTAATATATTCAATCTAATGAACCGAATTCCCAAATGAGTATGATGACGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAAGGTTATGCTAACTGTGAATGTTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATAGT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCAC............................................................................GTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATAT--GGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="17257" stop="30018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29002" g_stop="29718" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29002" e_stop="29718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACGTGCCATCGTCTTCAACTCAACACTAATTCTAGCCACTCTTCGTCACACCGGATCTTCAGGGTGAGCTAATGGTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATAGACTAGCTTCTTATGTATTTTTTAGCTTTTAGAATACTCTTAGTTTAGTCATTTGATCATAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATAGAAGTTGAT-TATTGGTTTTTA-TTAATGAGTTTAAGTCTTCCGCATTACTTTATGTGTATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATCGGAGGGTAAGTGTGGGTGCTAGTCGCGGTCCGGATGTTGGTCGTGACAAACTTTGGATCAGAGCATTAGGTTCTTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGTCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTTTTTCATTCTTGGTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACAACTACACCAACACCAACACCAACACCGGCGGGACAGGGTGCGTCTGAGCCAGCCACTGCGACTGTAG</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTA-TTTTTAGCTTTTAGACTACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGG-TTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGG-TTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCATTCTTTC-----TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCAGCACCGGCGGGACAGGGTGCGACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="29492" stop="30645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29792" g_stop="30345" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29792" e_stop="30345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTATCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATTAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTTTGTCTTATCTTAGCGGGTTATCTAATCAGGGTTAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCAAGGAGGCCTCATTGGAAATAGGCATGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGACTACAATTTTCTGGTTGATTGTCATGAGCTACTACACAAGATGGGTATAGTAGAAGGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGATCACATGTTGAGTGTCAACCGACAGAAGCAACACCTATGACTTGAGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="31743" stop="30817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31443" g_stop="31113" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31443" e_stop="31113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGATCCCAGGCTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGTTCCTCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGACTAGAAACACCAATAGGCATATCAAGTAATTCACAATGTAAATTCAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="76083" stop="30957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31915" g_stop="31257" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31915" e_stop="31257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTACCGGTAGTCTATGCACATCCGAAAGCTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCCTTGTTCAACAACTCTTGAAGTTTGACCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTAACCGGTTCAAGGTCAATAAAGAAGTCAATATACCTATCTGGTGGCATACCAGGAAGATCTATAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATTGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCAGCGGATGGGAATTGTAGTCACCCTCCCAAACTAACGGATCGATCCCAGGCTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGTTCCTCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="32663" stop="31386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32363" g_stop="31685" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32363" e_stop="31685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTCTCTCAATCTTAGAAGGAT-CACCATCACTCAATCCTTAGAAACCACGTGCCCCATGAAGGACACTGCATCTAGCCAGAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGGTTAAAAATCTCGTTCATCAAACTCATGAACGTAGCAGGGACATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCCGTCTTTGGCACGTCCGTTGCCCGTATTTTCAATTGATGATAGCCGGATCTGAAGTCAATCTTAGAGAAGACAGAAGCACCTTCTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTACCGGTAGTCTATGCACATCCGAAAGCTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCCTTGTTCAACAACTCTTGAAGTTTGACCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="34119" stop="35431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34419" g_stop="35131" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34419" e_stop="35131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGAAAAATTGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTTTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCCTTAGACACCACGTGCCCCAAGAATGACATTGAATCTAGCCAAAACTCACCCTTGGAGAATTTGGCATAAAGCTTTTTCTCTCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCTTACCTGGTCCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTGAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAGTGCGGGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCTTTCGTCTTCACAAACAGAACAGGAGCACCCCAAGAAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGCAACTCTTGCAGTTATGCCTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTCA-CAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="34119" stop="35314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34419" g_stop="35014" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34419" e_stop="35014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGAAAAATTGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTTTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCCTTAGACACCACGTGCCCCAAGAATGACATTGAATCTAGCCAAAACTCACCCTTGGAGAATTTGGCATAAAGCTTTTTCTCTCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCTTACCTGGTCCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTGAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAGTGCGGGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGTCTGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="34119" stop="35244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34419" g_stop="34944" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34419" e_stop="34944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGAAAAATTGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTTTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCCTTAGACACCACGTGCCCCAAGAATGACATTGAATCTAGCCAAAACTCACCCTTGGAGAATTTGGCATAAAGCTTTTTCTCTCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCTTACCTGGTCCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTGAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAGTG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="34190" stop="35468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34490" g_stop="35169" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34490" e_stop="35169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCCTTAGACACCACGTGCCCCAAGAATGACATTGAATCTAGCCAAAACTCACCCTTGGAGAATTTGGCATAAAGCTTTTTCTCTCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCTTACCTGGTCCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTGAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAGTGCGGGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCTTTCGTCTTCACAAACAGAACAGGAGCACCCCAAGAAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGCAACTCTTGCAGTTATGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATTGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="34190" stop="35148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34490" g_stop="34848" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34490" e_stop="34848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCCTTAGACACCACGTGCCCCAAGAATGACATTGAATCTAGCCAAAACTCACCCTTGGAGAATTTGGCATAAAGCTTTTTCTCTCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCTTACCTGGTCCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="35111" stop="36041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35411" g_stop="35741" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35411" e_stop="35741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAGTCCAAAATCGCAAAATTCGAAGAAATCCAAGTCATAACCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAAACAAGACCTATATACTTTTTCGGCAATCACAGAATCACCCACCGGAGTAGAAACATGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATATGAAAATGTGGAGCAAGGATCAAATAATATAGAAGCCATGCAATCACAAATCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="37361" stop="36209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37062" g_stop="36509" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37062" e_stop="36509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATTGGGAAAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCATAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGAAGGTACAACATGAGGCTATTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGAAAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTAAAACCTCCAGTCTTCAAGGTTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGTACACCGAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATAAGTTGCGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="38099" stop="37289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37799" g_stop="37580" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37799" e_stop="37580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACACCGGATTTCAGGGAGAGCTAAAGCTTCTATCTTGGACTGGATCCTCCTCTTCATGTCTTGATGCCTTGAAGTCCCGGCATGGACTAGATGTTTATGTATTTTAGCTTCTTAGATACTCATTAGATTTAGTAATTTTAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAAGAGTTGTTGAGTTTTTAGAAGTTATTGAA</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTC-TTAGATTTAGTAATTTGAAGTACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349296" ref_strand="-" ref_description="SGN-E349296 [cTOS-2-P10]">
      <seq>aatattatcaatacatattattcgctattaagagcttactacgaatatcgtaagagaaaccataacctacctccaccgaagattcgtgatcaagcaagtgatttcccaagctttgtgttttttcctctcgttcgatcctctttctcgttcgactttctctctctttctcttgttctttctattttctttattcaaaccctctttcttttaccctaattagtatataattaagaataaaatatggcaataataacccactaattaacttaaggttacctcttttaacccccaagtaattagacttattaacattaacccactaactttataattaaagcaggaatagtcaaaaacgtcccttaaaacaattgaggaattccgactcagactgggatttacgcagcctgtgacagcccgttgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactggattttcactgaagactctgtgatggtccatcacgcctgtgacggtccgtcttgccattccgttacgaagttcagagagtcgattttcagtacccaatttcagatttcctaagtgttttgaaatgagaccctgcgacggtccgtcgtgcccatgatggtccgtcgtggggtccgtcatttctgccagtttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="58736" stop="15773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58436" g_stop="57936" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57935" i_stop="50887" i_length="7049">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50886" g_stop="50776" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="616" r_length="111" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50775" i_stop="49660" i_length="1116">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.246" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49659" g_stop="49655" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="621" r_length="5" r_score="0.600"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49654" i_stop="49197" i_length="458">
            <donor d_prob="0.117" d_score="0.00"/>
            <acceptor a_prob="0.089" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49196" g_stop="49158" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="660" r_length="39" r_score="0.513"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E349296" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349296" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58436" e_stop="57936"/>
          <exon e_start="50886" e_stop="50776"/>
          <exon e_start="49659" e_stop="49655"/>
          <exon e_start="49196" e_stop="49158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAAAAACCATAACCTACCTCCACCGAAGACTAGTGATCAAGCAAGCAAATTCCCAAAGATT-TG-TTTCT-CT-TCGTT-TCTCCTCTTTCTCGTTGGACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAAACCCTCTTTCTTTTTCCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAGCTATATAATTAAAGCAGGAATAGTCAAAAACGTCCCTTAAAACAATTGAGGAATTCCGACTCAGACTGGGATTTACGCAGCCTGTGACGGCCCGTCGCGCCTGCGACGGTCCGTCTTGCTGCTCCGTCACAGAGTTCAGAGACT-CAATTTGTCTGAAGAGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCACACCTGTGACGGTCCATCCTGCCATTCCGTTACGAAGTTTTAGAGACTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAATGAGACCCTGCGACGGTCCATCGTGCCCATGACGGTCCGTCGTGGGGTCCGACGCCGCAGCTTGTTTTTGCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCATTACAATAGATACCAATTTACCCATCGTTCGTCCCCGAACGATCACAAGAAGGAAAACAAGGGCGAAAAGGAGTACCTGAATCTTTAAACAGATGTGGGTATCTTTCTTGCATATCTGCCTCCTTCTCCCATCTGGCTTCTTCAACCGGTCGATTCTTCCATTGCACCTTGATGCATGCAATCTCCCTTGACCTCAACTTGCGAACTTCTCTATCTAAAATAGCAACAGGCTCCTCCTCATAAGACAAATTCTCATCAAGCAAAACTGAATCCCAACGGATAATGTAGTTTCCATCCCCATGGTATCTTTTCATCATCGACACATGGAATACCGGATGTACTCCGGACAGCCCTGGAGGCAAGGATAACTCATAAGCCACCTCCCCTACTCGCTCAAGTACTTCAAAGGGACCAATGTACCTTGGTCTTAGCTTGCCTTTTTTACCAAACCGCATCACCCCTTTCATTGGCGAAACTTTCAACAAGATCACCCTCCATGAACTCTAAGTCTCTAACCTTTCGATCTGCATATTCTTTTTGCCTACTTTGCGCCGCTAGAAGCTTTTCTTGAATAGATTTCACTTTCTCTATCGAATCCCTCAAAAGATCAATACCCCAAGGTCTAACCTCGAATGCATCAAACCAACCAATGGGAGACCTACATTTTCTCCCATATAGTGCCTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTGTTGTAGGAGAATTCTGCTAAGGGTAAGAAGCCATCCCACTGACCACCAAATTCTATCACATATGCACGAAGCATATCCTCCAACACTTGAATCATTCGCTAAGACTAACCATCGGTCTGAGGATGGAACACAGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACGTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGATAGTAGAACCCCATGCAATCGAACGATTTCTGAGATATAGATCTTGGCTAACTTTTCGGCATTATAAGTCACCTTAACCGGAATAAAATGAGCAGACATAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATCGTCTTTGGAAGACCAACCACGAAGTCCATTGTGATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGTGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATCACGCTTCATTCTACTCCACCAAAGTGTTGCTTTAGGTCACGATACATCTTTGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTGATTCTCAAAACACCTTCCTCATTGATTTGTTCTTCCTTAGCCTCTCCTCGCAATACTTTATCTCGGATCCGGATAAATTTTTCATCATTAAACCGCTTTCCCTTAATCTTGTCAAGGAAGGAAGTTCTTGCCTTCACACAAGCTAAAAATCCTCCCTTCTCATTTACTTCTAATCTCATTAGGTCGTTAGCCAGAATCTGAACTTCCCTAGCCAATGGGCGTCTAGAAGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCGCCTTTCTACTTAAAGCATCCGCTAAAACATTCGCCTTCCCCGGATGATACAAAATAGTGATATCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCCCAAGTTCAAATCTTTCTGAGTAAAGACATACTGTAGGCTACGATGATCCGTATAGACCTCACACTTAACCCCATATAAATAGTGTCTCCATCACATTAATGCAAACACTACCGCGGCCAATTCCAAATCATGAGTTGGATAGTTACGTTCATGCACTTTTAATTGTCTTGAAGCATAAGCAATCACATTCTTCTCTTGCATTAGTACTGCACCCAATCCCGAATAGGATGCATCACAATACACAATGAAATTCTTAACTTCCACTGGCAAGGTGAGAATTGGTGCAGTAGTCAACAGAGTCTTGAGCTTCTGAAAGCTTTCCTCACACTCATCCGACCATACAAATGGAACATTTTGCTTAGTCAAGTTCATCAGTTGGGAGGCAATAGAAGAGAATCCCTTGACAAATCGGTAGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCTTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCCTAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCGTTAATGAATACAATCACAAAGAGATCCAAATATGGCTTAAAAATTCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACTTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCTTTTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGGCACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTGATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCTGAAAACTCTCATCCTTCTTCTTCTCAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTTGTCTAATGAAGCCTTTGCTCAACAACTCTTGTAGTTGGGCTTTTAACTCCCTTAACTCAGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGGAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCCTAGCACGAATAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTAACCCTCCCACACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTGTTAGCATTACAATCCAAAATCAAAAATTGCGAAGAAAGCCAAGTCATACCCAGGATTACATCCAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCCACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACATTGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCAATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCGGACCGCCTAGGGAAAGCGTAACAATGGGCCCTATTGTTTGTCTGTCCATTGACCCTACCATGTTGTGATGTAGTGGCTCTCGTTTTCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTAGGGGTCTATAACTCTGTTTTGGACATTTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTTAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCCTGTCCTCTAGAGTAAGAACCATTAAGGTCACCTCCTTTTCGAAACCTCTTTGATGTCGATGCCACGGTAAATTCATCTGGCTTCACTCCTTCCACCTCTACCACAAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCTGCTACCTGTAAGGCTGAAATCCGCAACTCTTACCTCAACCCCTTCACAAAATGACGAATCCACTCTTGTGGACTGAAACAAAGTTGAGTGGCATATTTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCTTCTTCCTATCCCTCAAAGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAAGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTTATAAGTCACAAACTCAACACCAAACCGTTCTACTATACACTTCTTGAGTAATAGCTCATGACAGTCAACCAGAAAATCGTAGGCATCCTCAGATCCAGCACCCTTGAAGACTGGAGGTTTAAATTTCAAGAACTCACTGAAAAGTTCATGCTGATCATTTGTAATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCATCCATACGAGAAGCCATAGTGGCTCCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAAAACTTGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCGCTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACCACTTCCTCAGTCGGTGGAGGAGTCACCGCTTTAGTATCAGACGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTCCTCTAGCTACAGCCCTAGTGGCTGGTTCAGACGCACCCTGTCCCGCCGGTGCAGGTGTTGGTGCGGTTGTTGCTCTAGTTCTAACCATCTGTGAAATAGAGTGAAGATGGTCAGATACCAATTAGTATCACCTAGATACCAATTTAATCCAAGTAATAGCACGAAAGAAAGAAAGAAAGAAAGAAAGAATGGAATTTTCCTAAAGTCTTATAGCCTCTCAAAGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAAAGAACCTAATGCTCTGATACCAAGTTTGTCACGATCCAAAACCGAGCCGCGACTTGCACATACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATATCATCATAAAATAATGCGGAAGACTTAAAATCATTAATAAAAACCAATTCAATAACTTTTATTTCCCCAAAATTTGGAAGTCATCATCACAAGAACATGTACTTCAAGTTACTAAATCTAAGAGTTTCTAAGAAGCTAAAAATACATAAAAGCTAGTCCATGCCGAAACTTCAAGGCATCAAGACATGAAGAGGAAGATACAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAATGAGGATTGGCTAGAGTTACTTCTAAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACCAAACACGAGTACTGATTAGATATCATCGGTCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATAAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACACGAGGACACAAGCCTCAATACTATACTCATTTGGGAATTATGTTCATTCGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTATGTCGGTACGTGACACTCCGATACCCTACTACTATCTGTCAGAACGTGACACTCCGATCCCCTAAATCTACATGTCGGTTCGTCACACCCGATCCCCTAAATCTATGTGTCGGTTTGTGACACCCGATCCCCTAAATCTACATGTCGGTTTGTGACACCCGATCCCCTAAATCTGCGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGATTAATGACACCCGATCCCCTAATCTCCATCTATCAATTCATCAAGCCTTCTTTCTTACCAAGGCATCATCAATCTCATTAGTTTAGTTCATCATGCCTTCTTTTATACCAAGGCCTCATCATTAACAAAGAGATTAGGGTTTTGCAAGATTTGGGATTCAATAACTTCATCAAGCTTATATAATCACAATTATATAATTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTATAATATTATAAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAAAAACCATAACCTACCTCCACCGAAGACTAGTTATCAACTTTGTTTCTCTTGGTTTCTCCTCTTTCTCGTTCGACTTTCTCTCTCTTTCTCTTTTTCTTTCTATTTTCTTTATTCAAAACCCTCTTTCTTTTACCCTAATTATCATATAATTATGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAGTTATATAATTAAAGCAGGAATAGTCAAAAATGTCCCTTAAATCAATTGAGGAATTCCGACTCAGACTGGGATTTACGCAGCCTGTGACGGCCCGTCGCGCCTGCGACGGTCCGTCCTGCTGCTCCGTCACAAAGTTCAGAGACTCAATTTCTCTGAAGAGTCTGTGACGGTCCGTCCTTCCATTCCGTTACGAATTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAAACCCTGCGACGGTCCGTCGTGGGTTCCGTCGCCTCAGCTTGTTTTTCCAAAAATAAAATCTACTGCTCAAAACGACTAAACAGGTCGTTACAATCTTCCACCCTGCTGCTATCCCTTTAAAAATTGTATTCACATTTTTTTCTTTTACTGTTGTTTCAATTAACCCTGCCAAAGTGACTTTATTCTTTTGTAAAAGCAGCTTAATCTCCTTCTGCTTATACCTTTTATCCATACCCCTCACATTCCAGAAAAACCACTTCATCAACATGTCTTTGATGTTCCACCTCTATCAATAGATAGTGAAGCCATTTGGTTATGTATGAGACTCTCAAACCAATTCCTTGTTGGTAAAGCTTTCAATATTGGAAAGTTAGCCAAACTCAATTCAAGTAGCGTATCTACATAAGACTGCTCACCATTATTCCTTGATATTTGCTGATCTAGCTTCTTTCCTATCTCCTATTCTTTCTCCTGCTTATTCTTCTGTGGACTAAGATTGTTCTCTTGTCTTTGCTCATCTATTTTCTCTTGCTCAGTCTTTTGCGAAATTGGACCTTTATACTGCCAAGTTTGAGTTACTTTTTTCCATGGCCTTCTTCTCTTTGGCATCTCTTCTTTTGGTTCTGGCTCCACTTGACATAGATGCCCTATCTTCTGGCACCTATCACAATATTGAGGCCTCCATTCTAATACTACTTCCTGCATAAATGTTTTCCCATTTGGATCCACTACTGCTATCTTCTGAGGTATAGTTTTTTTAACATTGACTTCAACAAGCATTGTAGCATATGAGATTCTTGTTTTCTTGGTGGTACATTCATCAGCAAAAAGAGGAACTCCAATAGCACTTGCAATCCTACTTAGAGATCCCACACCCCAACAGTTTAAAGGCCATTTTGGAAAATTCACCCACAAAGGAATTTCTGTTAGAAACTCACTTCCAAAATCAAACTCAGGACACCTTTGTTTCAGGATGATTGGTCGATTGTTGATAGTATATGGCCCAGAGAACAAAATCTCATTCATGTCACTATTCTTCTGAAACATGATTCGATAGTATCCATCCTCATGAAGAAACACATAAGGTTTATTCACACTTTACTAGTTCATTAATATGTATCTCTTCATAGTATTGTAGCAAGGGCATTCTCCAATCACATATGCAATGAGAGCACACTTCCATTTATGTTCTTCTTCTTGCACCTCTTTTTCTTCCAGCTGCACCATCGTTTTCCCATTCACTAACTTTGGAGAAAAATAGGATAAGTGCATTCTATTGGTTGCTACACGATTGTTCTTAAACATACTAACTCATGGTTCATTTGCCTCCTTCTTTTGTTCATTTTCATTACCACTATTTCAATCTCCATCTTCTCCATTTAGCTGCTCCTCTGAATTCCTTGTTACTGTTCCATTGCCATCAACCTTGTTTTCTTCATCAAACCCTTCAAGATCTGAGTTCTCAAGCGCTTCCTCATTAGTTCTTAGTGATTTTAAGCTCAATCTCCTTGCTACTTTAGTGCTTCTAGCTACCTCAGCTTCAAAACATGCTTCCCCTTTTTGAGCTTGTTCCTGCTCCTTTAACCCTAATGCTTCCACAGAAGTTCCTACTGAGCTACCAACGTTCATGATTGTTGTTC</genome_strand>
        <mrna_strand>AATATTATCAATACATATTATTCGCTATTAAGAGCTTACTACGAATATCGTAAGAGAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGTGATTTCCCAAGCTTTGTGTTTTTTCCTCTCGTTCGATCCTCTTTCTCGTTCGACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTC-AAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAATATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGTCCCTTAAAACAATTGAGGAATTCCGACTCAGACTGGGATTTACGCAGCCTGTGACAGCCCGTTGTGCCTGCGACGGTCCGTCCTGCAGGT-CGTCGCAAGGTTCAGAGACTGGATTTTCACTGAAGACTCTGTGATGGTCCATCACGCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACGGTCCGTCTTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTCCTAAGTGTTTTGAAATGAGACCCTGCGACGGTCCGTCGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCCGTCGTGGGGTCCGTCATTTCTGCCAGTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349726" ref_strand="-" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>ttatgttcattagattgagtatataacatctttcaagattcattgtctttatttctcttgtgtcggtacgtgacattccgctccntcatattcattaatcttcttgtgtcggtacgtgatactctgatcccctaaatctacgtgtcggaacgtgacactccgatcccctaaatctacgtgtcggttcgtgacacctgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaatctatgtgttggttcgtgacacctgatcccttaatctacgtgtcggtttgtgacacccgatcccctaattctacgtgtcagttcgtgacacccgatcccctaatctcattctatcaattcatcaagccttctcccttaccaaggcatcatcaatctcattactttagttcatcaagccttctcccttaccaaggcatcatcattaaaaagagattaggtttttacaagatttgggattcaataacttcatcatgcttatataataacaattatatagttacattcatgcaagcatacaattaagcacatagcagggtttacaatattatcaatacatatcattctctattaagagtttactacgaatatcgtaagagaaacaataacctacctccaccgaagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="59302" stop="50966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59002" g_stop="58657" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58656" i_stop="51640" i_length="7017">
            <donor d_prob="0.990" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51639" g_stop="51266" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="717" r_length="373" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E349726" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59002" e_stop="58657"/>
          <exon e_start="51639" e_stop="51266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTTCATTTGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTACTAATATGTGTCGGAACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTAGAAACACCCGATCCCCTAAATCTACGTGTTGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCTGATCCCCTAAATCTACGTGTCATTTCGTGACACCCGATCCCATAAATCTACGTGTCGGTTTGTGACACCCGATCCCCTAATATCCTTTTATCAATTTATCAAGCCTTCTTTCTTACCAAGGCATCATCAATCTTATTCTTTTAGTTCATCACTCCTTTTTTTATACCAAGGCCTCATCATTAACAAAGAGATTAGGGTTTTGCAAGATTTAGGATTCAATAACTTCATCAAGCTTATATAATCACTATTATATAATTACATTCATGCAAACATACAATTAAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAAAAACCATAACCTACCTCCACCGAAGACTAGTGATCAAGCAAGCAAATTCCCAAAGATTTGTTTCTCTTCGTTTCTCCTCTTTCTCGTTGGACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAAACCCTCTTTCTTTTTCCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAGCTATATAATTAAAGCAGGAATAGTCAAAAACGTCCCTTAAAACAATTGAGGAATTCCGACTCAGACTGGGATTTACGCAGCCTGTGACGGCCCGTCGCGCCTGCGACGGTCCGTCTTGCTGCTCCGTCACAGAGTTCAGAGACTCAATTTGTCTGAAGAGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCACACCTGTGACGGTCCATCCTGCCATTCCGTTACGAAGTTTTAGAGACTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAATGAGACCCTGCGACGGTCCATCGTGCCCATGACGGTCCGTCGTGGGGTCCGACGCCGCAGCTTGTTTTTGCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCATTACAATAGATACCAATTTACCCATCGTTCGTCCCCGAACGATCACAAGAAGGAAAACAAGGGCGAAAAGGAGTACCTGAATCTTTAAACAGATGTGGGTATCTTTCTTGCATATCTGCCTCCTTCTCCCATCTGGCTTCTTCAACCGGTCGATTCTTCCATTGCACCTTGATGCATGCAATCTCCCTTGACCTCAACTTGCGAACTTCTCTATCTAAAATAGCAACAGGCTCCTCCTCATAAGACAAATTCTCATCAAGCAAAACTGAATCCCAACGGATAATGTAGTTTCCATCCCCATGGTATCTTTTCATCATCGACACATGGAATACCGGATGTACTCCGGACAGCCCTGGAGGCAAGGATAACTCATAAGCCACCTCCCCTACTCGCTCAAGTACTTCAAAGGGACCAATGTACCTTGGTCTTAGCTTGCCTTTTTTACCAAACCGCATCACCCCTTTCATTGGCGAAACTTTCAACAAGATCACCCTCCATGAACTCTAAGTCTCTAACCTTTCGATCTGCATATTCTTTTTGCCTACTTTGCGCCGCTAGAAGCTTTTCTTGAATAGATTTCACTTTCTCTATCGAATCCCTCAAAAGATCAATACCCCAAGGTCTAACCTCGAATGCATCAAACCAACCAATGGGAGACCTACATTTTCTCCCATATAGTGCCTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTGTTGTAGGAGAATTCTGCTAAGGGTAAGAAGCCATCCCACTGACCACCAAATTCTATCACATATGCACGAAGCATATCCTCCAACACTTGAATCATTCGCTAAGACTAACCATCGGTCTGAGGATGGAACACAGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACGTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGATAGTAGAACCCCATGCAATCGAACGATTTCTGAGATATAGATCTTGGCTAACTTTTCGGCATTATAAGTCACCTTAACCGGAATAAAATGAGCAGACATAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATCGTCTTTGGAAGACCAACCACGAAGTCCATTGTGATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGTGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATCACGCTTCATTCTACTCCACCAAAGTGTTGCTTTAGGTCACGATACATCTTTGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTGATTCTCAAAACACCTTCCTCATTGATTTGTTCTTCCTTAGCCTCTCCTCGCAATACTTTATCTCGGATCCGGATAAATTTTTCATCATTAAACCGCTTTCCCTTAATCTTGTCAAGGAAGGAAGTTCTTGCCTTCACACAAGCTAAAAATCCTCCCTTCTCATTTACTTCTAATCTCATTAGGTCGTTAGCCAGAATCTGAACTTCCCTAGCCAATGGGCGTCTAGAAGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCGCCTTTCTACTTAAAGCATCCGCTAAAACATTCGCCTTCCCCGGATGATACAAAATAGTGATATCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCCCAAGTTCAAATCTTTCTGAGTAAAGACATACTGTAGGCTACGATGATCCGTATAGACCTCACACTTAACCCCATATAAATAGTGTCTCCATCACATTAATGCAAACACTACCGCGGCCAATTCCAAATCATGAGTTGGATAGTTACGTTCATGCACTTTTAATTGTCTTGAAGCATAAGCAATCACATTCTTCTCTTGCATTAGTACTGCACCCAATCCCGAATAGGATGCATCACAATACACAATGAAATTCTTAACTTCCACTGGCAAGGTGAGAATTGGTGCAGTAGTCAACAGAGTCTTGAGCTTCTGAAAGCTTTCCTCACACTCATCCGACCATACAAATGGAACATTTTGCTTAGTCAAGTTCATCAGTTGGGAGGCAATAGAAGAGAATCCCTTGACAAATCGGTAGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCTTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCCTAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCGTTAATGAATACAATCACAAAGAGATCCAAATATGGCTTAAAAATTCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACTTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCTTTTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGGCACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTGATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCTGAAAACTCTCATCCTTCTTCTTCTCAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTTGTCTAATGAAGCCTTTGCTCAACAACTCTTGTAGTTGGGCTTTTAACTCCCTTAACTCAGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGGAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCCTAGCACGAATAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTAACCCTCCCACACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTGTTAGCATTACAATCCAAAATCAAAAATTGCGAAGAAAGCCAAGTCATACCCAGGATTACATCCAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCCACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACATTGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCAATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCGGACCGCCTAGGGAAAGCGTAACAATGGGCCCTATTGTTTGTCTGTCCATTGACCCTACCATGTTGTGATGTAGTGGCTCTCGTTTTCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTAGGGGTCTATAACTCTGTTTTGGACATTTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTTAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCCTGTCCTCTAGAGTAAGAACCATTAAGGTCACCTCCTTTTCGAAACCTCTTTGATGTCGATGCCACGGTAAATTCATCTGGCTTCACTCCTTCCACCTCTACCACAAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCTGCTACCTGTAAGGCTGAAATCCGCAACTCTTACCTCAACCCCTTCACAAAATGACGAATCCACTCTTGTGGACTGAAACAAAGTTGAGTGGCATATTTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCTTCTTCCTATCCCTCAAAGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAAGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTTATAAGTCACAAACTCAACACCAAACCGTTCTACTATACACTTCTTGAGTAATAGCTCATGACAGTCAACCAGAAAATCGTAGGCATCCTCAGATCCAGCACCCTTGAAGACTGGAGGTTTAAATTTCAAGAACTCACTGAAAAGTTCATGCTGATCATTTGTAATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCATCCATACGAGAAGCCATAGTGGCTCCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAAAACTTGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCGCTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACCACTTCCTCAGTCGGTGGAGGAGTCACCGCTTTAGTATCAGACGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTCCTCTAGCTACAGCCCTAGTGGCTGGTTCAGACGCACCCTGTCCCGCCGGTGCAGGTGTTGGTGCGGTTGTTGCTCTAGTTCTAACCATCTGTGAAATAGAGTGAAGATGGTCAGATACCAATTAGTATCACCTAGATACCAATTTAATCCAAGTAATAGCACGAAAGAAAGAAAGAAAGAAAGAAAGAATGGAATTTTCCTAAAGTCTTATAGCCTCTCAAAGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAAAGAACCTAATGCTCTGATACCAAGTTTGTCACGATCCAAAACCGAGCCGCGACTTGCACATACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATATCATCATAAAATAATGCGGAAGACTTAAAATCATTAATAAAAACCAATTCAATAACTTTTATTTCCCCAAAATTTGGAAGTCATCATCACAAGAACATGTACTTCAAGTTACTAAATCTAAGAGTTTCTAAGAAGCTAAAAATACATAAAAGCTAGTCCATGCCGAAACTTCAAGGCATCAAGACATGAAGAGGAAGATACAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAATGAGGATTGGCTAGAGTTACTTCTAAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACCAAACACGAGTACTGATTAGATATCATCGGTCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATAAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACACGAGGACACAAGCCTCAATACTATACTCATTTGGGAATTATGTTCATTCGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTATGTCGGTACGTGACACTCCGATACCCTACTACTATCTGTCAGAACGTGACACTCCGATCCCCTAAATCTACATGTCGGTTCGTCACACCCGATCCCCTAAATCTATGTGTCGGTTTGTGACACCCGATCCCCTAAATCTACATGTCGGTTTGTGACACCCGATCCCCTAAATCTGCGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGATTAATGACACCCGATCCCCTAATCTCCATCTATCAATTCATCAAGCCTTCTTTCTTACCAAGGCATCATCAATCTCATTAGTTTAGTTCATCATGCCTTCTTTTATACCAAGGCCTCATCATTAACAAAGAGATTAGGGTTTTGCAAGATTTGGGATTCAATAACTTCATCAAGCTTATATAATCACAATTATATAATTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTATAATATTATAAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAAAAACCATAACCTACCTCCACCGAAGACTA</genome_strand>
        <mrna_strand>TTATGTTCATTAGATTGAGTATA-TAACATCTTTCAAGATTCATTGTCTTTATTTCTCTTGTGTCGGTACGTGACATTCCGCTCCNTCATATTCATTAATCTTCTTGTGTCGGTACGTGATACTCTGATCCCCTAAATCTACGTGTCGGAACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCTGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCT-AATCTATGTGTTGGTTCGTGACACCTGATCCCTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACGTGTCGGTTTGTGACACCCGATCCCCTAATTCTACGTGTCAGTTCGTGACACCCGATCCCCTAATCTCATTCTATCAATTCATCAAGCCTTCTCCCTTACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATCATTAA-AAAGAGATTAGGTTTTTACAAGATTTGGGATTCAATAACTTCATCATGCTTATATAATAACAATTATATAGTTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCTCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACAATAACCTACCTCCACCGAAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="50966" stop="51967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51266" g_stop="51669" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51266" e_stop="51669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTTTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTTATAATATTATAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCTTGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCATGATGAACTAAACTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGATGGAGATTAGGGGATCGGGTGTCATTAATCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGCAGATTTAGGGGATCGGGTGTCACAAACCGACATG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="-" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>ggatagcgttcatgaaactgtcatgtagatttaggggatcggagtgtcatgtgttcacacaagaggattaatgaatatgagggagcggaatgtcatgttccgtcacaagagaaataaagataatgaatcttgaaagatgttaatatactaaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacgtgacggtaattgttaatgatatagtgcttgttgttgctacatgttgagtatcatagttgattttatgataatncttgatatatattgatttctattttgagttgggcgatgatatctattcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="16872" stop="52387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51645" g_stop="51686" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51687" i_stop="51792" i_length="106">
            <donor d_prob="0.000" d_score="0.79"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51793" g_stop="52087" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="337" r_length="295" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E357033" ref_strand="-">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51645" e_stop="51686"/>
          <exon e_start="51793" e_stop="52087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGGGTGTCACAAACCGACATGTAGATTTAGGGGATCGGGTGTCACAAACCGACACATAGATTTAGGGGATCGGGTGTGACGAACCGACATGTAGATTTAGGGGATCGGAGTGTCACGTTCTGACAGATAGTAGTAGGGTATCGGAGTGTCACGTACCGACATAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCGAATGAACATAATTCCCAAATGAGTATAGTATTGAGGCTTGTGTCCTCGTGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTTATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGACCGATGATATCTAATCAGT</genome_strand>
        <mrna_strand>GGATAGCGTTCATGAAACTGTCATGTAGATTTAGGGGATCGG..........................................................................................................AGTGTCATGTGTTCACACAAGAGGATTAATGAATATGAGGGAGCGGAATGTCATGTTCCGTCACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTAAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACGTGACGGTAATTGTTAATGATATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATAATNCTTGATATATATTGATTTCTATTTTGAGTTGGGCGATGATATCTATTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="51390" stop="59391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51690" g_stop="51721" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51722" i_stop="51792" i_length="71">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51793" g_stop="51998" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="239" r_length="207" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51690" e_stop="51721"/>
          <exon e_start="51793" e_stop="51998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAACCGACACATAGATTTAGGGGATCGGGTGTGACGAACCGACATGTAGATTTAGGGGATCGGAGTGTCACGTTCTGACAGATAGTAGTAGGGTATCGGAGTGTCACGTACCGACATAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCGAATGAACATAATTCCCAAATGAGTATAGTATTGAGGCTTGTGTCCTCGTGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGG.......................................................................AGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="54580" stop="18512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54280" g_stop="53491" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54280" e_stop="53491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCAATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCGGACCGCCTAGGGAAAGCGTAACAATGGGCCCTATTGTTTGTCTGTCCATTGACCCTACCATGTTGTGATGTAGTGGCTCTCGTTTTCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTAGGGGTCTATAACTCTGTTTTGGACATTTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTTAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCCTGTCCTCTAGAGTAAGAACCATTAAGGTCACCTCCTTTTCGAAACCTCTTTGATGTCGATGCCACGGTAAATTCATCTGGCTTCACTCCTTCCACCTCTACCACAAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCTGCTACCTGTAAGGCTGAAATCCGCAACTCTTACCTCAACCCCTTCACAAAATGACGAATCCACTCTTGTGGACTGAAACAAAGTTGAGTGGCATATTTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCTTCTTCCTATCCCTCAAAGTCCGAGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="53247" stop="76031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53547" g_stop="53719" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53720" i_stop="54463" i_length="744">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.240" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54464" g_stop="54991" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53547" e_stop="53719"/>
          <exon e_start="54464" e_stop="54991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAAATATGCCACTCAACTTTGTTTCAGTCCACAAGAGTGGATTCGTCATTTTGTGAAGGGGTTGAGGTAAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTTGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTTACCGTGGCATCGACATCAAAGAGGTTTCGAAAAGGAGGTGACCTTAATGGTTCTTACTCTAGAGGACAGGGTTCTGGAGGTTACTCAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTAAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAAATGTCCAAAACAGAGTTATAGACCCCTAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGCCGAGGTGATGGGAAAACGAGAGCCACTACATCACAACATGGTAGGGTCAATGGACAGACAAACAATAGGGCCCATTGTTACGCTTTCCCTAGGCGGTCCGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATTGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACAATGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTGGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTGGATGTAATCCTGGGTATGACTTGGCTTTCTTCGCAATTTTTGATTTTGGATTGTAATGCTAACACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTTGTGTGGGAGGGTTACTACACTTCCAATCCGGTGCGTATCATCTCCTTTATTCGTGCTAGGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTCCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAAGCCCAACTACAAGAGTTGTTGAGCAAAGGCTTCATTAGACAAACTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGAGAAGAAGAAGGATGAGAGTTTTCAGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TT--GTA-AAGATCG--G-CAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="54578" stop="53445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54278" g_stop="53745" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54278" e_stop="53745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCAATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCGGACCGCCTAGGGAAAGCGTAACAATGGGCCCTATTGTTTGTCTGTCCATTGACCCTACCATGTTGTGATGTAGTGGCTCTCGTTTTCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTAGGGGTCTATAACTCTGTTTTGGACATTTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTTAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCCTGTCCTCTAGAGTAAGAACCATTAAGGTCACCTCCTTTTCGAAACCTCTTTGATGTCGATGCCACGGTAAATTCATCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="55273" stop="30785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54974" g_stop="54213" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54974" e_stop="54213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAACTCTCATCCTTCTTCTTCTCAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTTGTCTAATGAAGCCTTTGCTCAACAACTCTTGTAGTTGGGCTTTTAACTCCCTTAACTCAGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGGAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCCTAGCACGAATAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTAACCCTCCCACACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTGTTAGCATTACAATCCAAAATCAAAAATTGCGAAGAAAGCCAAGTCATACCCAGGATTACATCCAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCCACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACATTGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCAATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="55273" stop="19335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54974" g_stop="54314" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54974" e_stop="54314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAACTCTCATCCTTCTTCTTCTCAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTTGTCTAATGAAGCCTTTGCTCAACAACTCTTGTAGTTGGGCTTTTAACTCCCTTAACTCAGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGGAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCCTAGCACGAATAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTAACCCTCCCACACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTGTTAGCATTACAATCCAAAATCAAAAATTGCGAAGAAAGCCAAGTCATACCCAGGATTACATCCAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCCACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACATTGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="55863" stop="54551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55563" g_stop="54851" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55563" e_stop="54851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGTAGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCTTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCCTAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCGTTAATGAATACAATCACAAAGAGATCCAAATATGGCTTAAAAATTCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACTTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCTTTTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGGCACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTGATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCTGAAAACTCTCATCCTTCTTCTTCTCAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTTGTCTAATGAAGCCTTTGCTCAACAACTCTTGTAGTTGGGCTTTTAACTCCCTTAACTCAGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="55863" stop="54668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55563" g_stop="54968" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55563" e_stop="54968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGTAGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCTTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCCTAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCGTTAATGAATACAATCACAAAGAGATCCAAATATGGCTTAAAAATTCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACTTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCTTTTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGGCACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTGATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCTGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="55863" stop="54738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55563" g_stop="55038" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55563" e_stop="55038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGTAGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCTTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCCTAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCGTTAATGAATACAATCACAAAGAGATCCAAATATGGCTTAAAAATTCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACTTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCTTTTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGGCACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="55792" stop="54834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55492" g_stop="55134" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55492" e_stop="55134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCTTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCCTAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCGTTAATGAATACAATCACAAAGAGATCCAAATATGGCTTAAAAATTCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACTTGGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="51391" stop="59632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58848" g_stop="59332" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58848" e_stop="59332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTTCCGACACATATTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCAAATGAACATAATTCCCAAATCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCGTGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGACTTCTATTTTGAGTTGACCGATGATATCTAATCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCACCTTCGACTCAACAGTAACTCTAGCCAGTCCTCATTACTCCGTATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGA-T------TCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="58987" stop="59788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59287" g_stop="59485" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="207" polyA_stop="219"/>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59287" e_stop="59485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACTCCGTATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATATCTTGATGCCTTGAAGTTCCGGCATGGACTAGCT-TTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAACTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGA-AATAATAGTTATTGA</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTA-TTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577986" ref_strand="+" ref_description="SGN-E577986 [LE08CD09]">
      <seq>taccaccccaaccgaacctccacaactacaacctacataaacatcagcacaacctaacaactcacagtttacatagaacgtaactctacaaaaacatttagacaaattacatatcctccacaacaacactttaacaaattacatatcctcaacatcaacacttaaacaaattagatatcctcaatagcaacacttccaaaaatttacatatcctcaataacacacttcaacaaatcacatatcctcaacaacaacacttcaacaaattatatatcctcaataacaagctcagtattcaacaatcacaagttccgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="63077" stop="70241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63377" g_stop="63567" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63568" i_stop="65026" i_length="1459">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65027" g_stop="65035" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="198" r_length="8" r_score="0.444"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65036" i_stop="69819" i_length="4784">
            <donor d_prob="0.261" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69820" g_stop="69941" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="319" r_length="121" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E577986" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63377" e_stop="63567"/>
          <exon e_start="65027" e_stop="65035"/>
          <exon e_start="69820" e_stop="69941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCACCCCCAACCGAACCTCCACAACTTCAACCTGCATAAACATCAACCCAATCTAACAACTCACAGTTTACATAGAACGTAACTCAACAAAAACATATAGACAAATTACAAATCCTCCACAACAACACTTTAACAAATTACATATCCTCGACACCAACACTTTAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAAAGGCAATCACTAGATCAGCAAAACACAATATCATGTTCACTAATGATAAGTATGTGCAATGTAATGGAATGCAATGTCAAGTATAATGATGCATGTCTCACCTAGTGATACTCACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATTTGTCGCGGCGCACGACACAACCCTCGATAACAGTAAACATTGCGGTGTGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTTAAGTTATCATTCTTTCTCAATGCACATAACACTTTCACAACTATGTCTCAGAATAATGCAATGACATGTCCACACAAATAATGAGGAGATGACCATTTTCATAACATTGCACAGTTCACAACCACACAAACATGAAATAACATCAACAATGATTCAACAAGCCATCAAACTTTTCTCAACACATCACACATAAATAATTAATCACATCGCCTTTTGTTATCCCTTTTATTTTATCATTAGAATTAATCAATGTGGACAAGTCAACCCATCACCAATCCCGCTACTCCCAAACATATATCACAATGAAAATACACGCATTCCATACACTTAACAAGAGTTTAGAAATCCACTTGCCTCAATTTATCGAACAATCACTTCGGGACTTTAGCCTTCCTCCTTTGTTGCACTTCCAAATAAAATCTAGTCTATTCAAATAATTAAACACTATAAGGTTTCGAAGTTAACAACACACATATTGCACGTGTCTAGACTAAACCAAAAAAAAAACTCACGCAAATTTATAATTAAGTTCTTAAGTTTTAAGATTAGGATTAAAATTTTTAATTTCTTTTCAATATCATAAATCTTAAGACATTCACTTAATACCATATACCTAATACTTAATTATATAAATTAATATATCAAAACTTAAATGATAATATGGAAACTATTAAAAGGATCTCAAATTGATCCCAATTTATATCACCCGTATTTGAACACAAAAATAAAGATATTTCATGAAATACTTTTATACGGAAGGCTTCTTGCATGTCTATTTACCTCTCTTCCCAATAATTGTTTTATGATCATCAACAATTGGTCATAATTACTTAATGACTAAGGTGAAATTTATGCTAAATAACATATGCATACATGTACACAGAATCAAAAATTAGTTTCATATATTAGTGTAAATTATACACGTTTTAATCTAAAAATCTACTTCTAATTGCATGAAAACTTAATAGAAAGGATGAAAATAATTACCTTGACGCCTTGAGATGAAAATATTGATTTTTCTCCTCCTTTTTCATTTTCTTTTCTCCCTTTCTTTTCTTTTCTTTTCTGTTCTTTTTTCACATCATTCTTTTTTTTCTCATATAGCCGTCACAGGCTTGATAAGTTTAGGGCACTTTGCTCCCTTTTTTAATTATTTTATTTTATTATATTATATTATTTGATTTTCTTTTTTTTCCTTTCTCATTATTCTTAGCAATAAAATAAGTCTTTATTAAATCTAAAAATTATGTCTCTCATTCTTATAAGTCATAAATTATTTACAAAATCTACTAAAAAGATTAATATAATAATGCTGGTTAAAATTTCTAAAACGACTAAGAGGATCATTACATTATCCACCACTAAAAATCATGTTCGTCCTCGAACATAAAGTAGGAGAAGGAAGAATAACTAACACGACCAAAAACTTGAGGTATGATTTTCAAAGTCGTGTTCATCTCTCCAAGTGATCAATTCATCTTTAGCACATTCCATTAAATATCAACTACCAAGAACTGAAGTTTTGAACGAAACTTCGAAAGATTTACATATCACACCATAAACCAACCAATGAACCCAATCTCAACTGAAACCTACTGGAACATAACACAATCATCACAACAAATCTTTTCTTACATAACAAAGATAACATTTTGAATTCATACCCACTACAATCTGAAGTTAACCTAGATCAACGATCACATACACCTATTACACAAATCATCATAGACCTTATCAAGATTCCCTTGTCATAACCTAATCTTTTCATGAGCTTAAACTATGAAAATTTGATCTTTAGATATCGAATACTCATCAAGGGATAATCAAACATATCTAATCCAATGAAGAACATATCAAGTTAGCACCCAACAAATGGTACACGCTAGGATGCAGAACCTTTTACAACATTGTCGGATAACCATAATTATTCATGAAAGCTCTTTTGTAAGTTCCCATAAGCAAGGTTGTGCATATAAAAATAGTGATATATTTCTAATTTTTCAAACAACATCAAATATGTCATAACTGAAGTGACCTAGTCTGCCTAAAGAACATACCCTATCAAGAGAATATAAGAGGATCGGCACATCCGATCCACCACTAGGAATTCACCCATAGATGTAAAAAAAATGTGGGCATATGCAGTGAATCATACTCCAAATCATGTCCGAAACGAAGTAGGTGGTCAACTTAAGATTATACGGAATCAAGGTCGAATAACACTAGATACTTTATCCATAATCCCATATCAATATTTTCATTCATCTGACTATATCCCTCAATTTATTTTTTTTTATTTAATTTTTTTTTACCCAAAATCGACCAGTTGATCTCTATTACAATTTTACACATGTTGGATTTGCCAAACCCCATACTTCTCACAGTACTCCATCAAAGCCAACACTATTAATATTAACAAATATCATAACCACACCAACCATTTACCTTACTTTCACACCGTCAGTAGTATTACATTCTCCTTAGCAAGTACATTGTAGTCTCCAAGACTTTGAACTATGGTTTCTTATCTTTCCATTTAAGCGTCCCGTGATAGATATAAGTCACACCCAAGACCGATAACACTAATTTCAAATCTATATTTCTCCTTTAGGGTAAAATAAAAAAAGAAACACTTAATGTCAACTTCACCTAAACTTTCACATACCATTTTCAACCACCATCTGTACTATCATTTACCTCATGCAATAACTCAAACAAACCCTTGATCACTCCAATATTAATGTATACTATAATCTCATAACCTCTACTCACCATAAAATATCTACGTAACACATTATAACAATCTATTTTGTCTCGTCAACAAAATAATTTTAATCCCCTCCAATCCTCATTAATCATTTAAAATTGTAGGTCCACACTATTTAACATCCATTTAATACTTAATCACATTCTGAACAATCTAGCTCGACATAACCATATGTAATCTTCCATACGTCATTTATTGTAACCCAATCAAAACATAATATTTAGAAAAGTTAATAATACACACATAGTAAGTAGGTGCCGAACTAGTTCACATCTCATAGTCATATCTAAACTCAAAGGCGAAATCACTACAACCACCACCTCCGAATCCAATGTTTGTACGAGAGGTCTTATTGTTCCTTTGCCTTTCTTAAAATCTTTCCACAACGAAAATTTCAAATAACTTTAACTCTTCAATACACCATAATTTTTCTCCTTTTTGCTAACTCACATACCAGTCTTATATATATATTTTTTTTGGCCAACAATATGGGAAACCTTAGGTATAACAATCAAAAGTAACCAAATGTACTACTCAAATTTTAAGTCCTTCTAAATGCTTCATACTCAATGTAATCGATCATTTCATACCTTACCAATTCATACCTTGACAAGATACACTATCACAAATCTAAACTCGCCATGTAAACTTGAAGTTTTGATCCCAACCATGTAACACAATCCCATTATCTTACAACATTAGCTTAAAAAAAAAATTACTTAACGTATTTTAGCTTATTGTTGATCGCCTCTTCATTGACCCTACCATATCTTTTTTTTTAAATCTTATCGTACTCCTTACAAAATCAAAACCAAAAAAAGAAATAATCATCATACTCGAATTGAACGTCTGTACACTCCTTTCTCAAATTTTTTCCAATAGTTTATTTTTTTTAATCAATCTATTGATCTTGTGACACTATATTATATCATAATCTGGAAGAAACAGGTAAAATCACTTGTCTCTGAACCCAATTCTCCAAATTCCTCTGAAGATACATCCTCAACCCTTGCAAACAAAGTAAAATAGCCTAGTTTTATCCTCGCTCTGAAAGTTAAACTATTTACCACTAATTCTTTCCATTATGGCTCTAGCTCCTTTCAATTTTATTCGATCACATCCCAACTCCTTATAAAAATTACCATAAAACCACACTACTTATGAAATAGAAACAACCATAATCTTAGATACTCAAAATTCATCATTACCATAAAAAAATTATTTTAACCAACACCCGTATCATATAGTTGCATTTCAATTGTAATGCGTCATAAAATCTTATAATCATCATGCTTAGTTCGTCATTACCCTCACTACGAATTTAGCCTCGCCATTAACATGACAATACAAACCTAGCTATGCCAACCATCCAAGGTACTTACTCAATTTATATGCACTTTCTTACTAAAATTCTCAATTACATTCACACAAGTATACTTTTTGAGATTTCCTTTACTTGTAATTTAATCATCCATATTTCCACTTCCACGGAATTTAAGATGAAATCAACACTCATTTACAATCCACAAAATACATTTTACAACCTGAACATATTAATATCATACCAAGGATCCACCACTAAAAGCTTCCTTATAAATAATGCTTAACACATCCACTCGTACTAACAAGCTAGTTGGTATTTCGAATATGAATTCAACACCAAATCTTATCATATGAGCATGTAATACAATAGATAAGTCCTAAAGTAGTTAGTATTTTCACTTAACAATCAACATGTCCGTTTTCATGTACCACTAGTAACACATCGTGAAAATTCATTACATCCACCACTAGAACATATCATATCTATCGAGAAGATCAATTCCAAATAAGTCACACACTTTATCCATCAAATAGCTGTAAAATATACCAGATTAGTTTTGTATCTAACCCAAGCTATATGTATCCTTTCGTAAGCAAGGTCAATATCAAAAGTAACACACTCCATAATTCTAACCAAGTACCCATCAGTACCATTGTAATAGTCGTATCATGACCTTCTTTGGTATGCACTCAATCTGTGAAACGACATAAGGGATTCCGACCTGAATTGGTGCAACATCATTTGCTAAGCAACTCATTAATGGTATGACAACTATATCAATTGTATTTTTCAAGTTTACACTATTTATTATCTAGTTAATTCTCCAAACATTTAACATCTAATTGTTGAACCACTCCATGTTGAACCACTCCATATTTTGCTTAGACCAGATAAGTACTATATTTATTATTATTATTTTACAATGATAACTAACCTTACTCAACTCTTTTAAATATGATCACACATTCGTTTCATAAGTATATCATTTCCACCTTAATATGAGATCTAACATCAAACCAATACACGACATGCCACTGATTCACAAAAGGAACTACGCACGAGTCATCACATAAACGAGAGCGAATGGTGTGAAGCAATAAGAATCAAATGGGACCAAGTATGCACAAGAGAGATCCAAGAATTGAAGATATTTCCTAAAAGTCACTATTGTCTCTCGAAGATAGGTACATACGTCTCCGTACCGATCATCAAGACTCTATTTAGACTCGACTTGTACACACGTGAGACCTATGAACCTGGGGCTCTAATACCATTTTGTCACGACCCAAAAATGGACGTGATGGCACTCGTCTTATCCCACCAAGACAAGTAAGCCTAAAACTCAACTATTACAATAAAAATGCGGAAAATTTACTATCAACTTACATTATACCCCAAAACCTGGTTGTCACGTGTACAAGCCTCTAAAGTATTACAATCGGATCAAAAGAAAATATAAGTCTCATATAATATTGTTTCTAGAGTAGAATAAAATCATAAACAAGAGTAACTAGTGATGCTGAGATGACCAACAACTACCTCACAAAATCTCCAGGAAGCCTCAGAAAAGAAGAGAATATATCATAAAAGTCCGGGTTAGTAACCTACAAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAACCTCTAAACACAAGCTAGGAGGATGATATACGGGTACTCCTACCACCCCCAACCGAACCTCCACAACTACAACCTGCATAAACGTCAACCCAACCTAACAACTCACAGTTTACATAGAACGTAACTCAACAAAAACATATAGACAAATTACATATCCTCCACAACAACACTTTAACAAATTACATATCCTCCACAATAACACTTTAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</genome_strand>
        <mrna_strand>TACCA-CCCCAACCGAACCTCCACAACTACAACCTACATAAACATCAGCACAACCTAACAACTCACAGTTTACATAGAACGTAACTCTACAAAAACATTTAGACAAATTACATATCCTCCACAACAACACTTTAACAAATTACATATCCTCAACATCAACACTTAAACAAATTAGATATCCTCAATAGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTCCA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTACATATCCTCAATAAC-ACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539191" ref_strand="+" ref_description="SGN-E539191 [TUS-58-N4]">
      <seq>cttgtggtatatgtttgggagtaacgggattggtgatggattgacttgtccacattgattaatttaatgatgaaaaaaaaaggataaaaaaaaaggcaatgtgattaaatatttaagtgtgatgtgttcagaaagggatgaaggattgttgaatcattgttgatgtgatttcatgtttgtgtggttttgaattgtgcaatgttatgaaaatggtcatctcctcattatttgtgtgaacttgccatctgcattattatgaggcattggttgtgacaagtgttatgtgcattgagaaagaatgagtacttaagaggatgtacaatttcgagggacgtatcgcgcgccgcgatggatactatatttcgagggacgtatcgcatgccgcgatggatactatattttgagggacgtatcgcgcgccgcgatggttactattatcgagggtcgtgtcgtgcgccgcgacagatgcatggacagatatgtcccccatggttcccagactgagagacagcgggtgtgtatcactaggtcagacatgcatcattatacttgacaatgcattacacatacttatcattggtgaacttgatattgtgttttgctgatcttgtgattgaatttctgcgaaatttgtgattgatgaatactgagcttgttattgaggatatataatttgttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="70866" stop="63239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70566" g_stop="69880" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-E539191" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70566" e_stop="69880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGATATATGTTTGGGAGTAAC-GGATTGGTGATGGGTTGACTTGTCCACATTGATTAATTCTAATGATGACATAAAAGGGATAACAAAA--GGCGATGTGATTAATTATTTATGTGTGATGTGTTGAGAAAAGTTTGATGGCTTGTTGAATCATTGTTGATGTGATTTCATGTTTGTGTGGTTGTGAACTGTGCAATGTTATGAAAATAGTCATCTCCTCATTATTTGTGTGGACATGTCAT-TGCATTATTCTGAGACA-TGGTTGTGA-AAGTGTTATGTGCATTGAGAAAGAATGATAACTTAAAGAGGATGTACCATTTCGAGGGACGTATCGCGCGCCGTGATGGATACTATATTTCGAGGGACGTATCGCGCGCCGCGATGGATACTATATTTCGAGGGACGTATCGCACGCCGCGATGGTTACTATTATCGAGGGTCGTGTCGTGCGCCGCGACAGATGCATGGACAGATATGTCCCCCATGGGTCCCGGACTGAGAGACAGCGGGTGTGTATCACTAGGTCAGACATGCATCATTATACTTGACATTGCATTCCATTACATTGCACATACTTATCATTAGTGAACTTGATATTATGTTTTGCTGATCTAGTGATTGCCTTTTTGCGGAACTTGTGATTGTTGAATACTGAGCTTGTTATTGAGGATATATAATTTGTTAAA</genome_strand>
        <mrna_strand>CTTGTGGTATATGTTTGGGAGTAACGGGATTGGTGATGGATTGACTTGTCCACATTGATTAATT-TAATGATGAAAAAAAAAGGATAAAAAAAAAGGCAATGTGATTAAATATTTAAGTGTGATGTGTTCAGAAAGGGATGAAGGATTGTTGAATCATTGTTGATGTGATTTCATGTTTGTGTGGTTTTGAATTGTGCAATGTTATGAAAATGGTCATCTCCTCATTATTTGTGTGAACTTGCCATCTGCATTATTATGAGGCATTGGTTGTGACAAGTGTTATGTGCATTGAGAAAGAATGAGTACTT-AAGAGGATGTACAATTTCGAGGGACGTATCGCGCGCCGCGATGGATACTATATTTCGAGGGACGTATCGCATGCCGCGATGGATACTATATTTTGAGGGACGTATCGCGCGCCGCGATGGTTACTATTATCGAGGGTCGTGTCGTGCGCCGCGACAGATGCATGGACAGATATGTCCCCCATGGTTCCCAGACTGAGAGACAGCGGGTGTGTATCACTAGGTCAGACATGCATCATTATACTTGACA----A-TGCATT--A---CACATACTTATCATTGGTGAACTTGATATTGTGTTTTGCTGATCTTGTGATTGAATTTCTGCGAAATTTGTGATTGATGAATACTGAGCTTGTTATTGAGGATATATAATTTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="79561" stop="80397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79861" g_stop="80097" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79861" e_stop="80097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACTGAATTTTCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTTATATATACTGTTTTCTATTTTGAGTTGGCCGATAATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTAATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTGTT-ATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="146452" stop="147382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146752" g_stop="147082" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146752" e_stop="147082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGTTTGGTTAACGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAACCAATTCATACCCAGAATTACATCGAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCAAAAACGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACTGGAGTAGAAACACAAATAGGCATGCCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAAGAAGATACATATGAAAATGTGGATCAAGGATCAAATAATACGGAAGCCATGCAATCGCAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>42</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1422" PGL_stop="1805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1422" e_stop="1805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="1422" e_stop="1805" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1422" stop="1805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGTTACCAAATACTTCAACTCTTCGAATCTGGGTACTGGGATAACTTCTCTTATCTTCGCGACGAACTTGCAGGACGGACCGTCATATCCATGACGGACCGTCACAAGATTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTGTCTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTCGCTCAAAATCTCCGCATTCAGCTTTAGACAGATTTCCTGCAAAACAAAGAAAAACTTATATAAAAATTAGCACAAAAAGGCTTACAGACACAATAAATTAAGGAAAAGGTATTAATTATACCGTGAAACCACGGTATATCAGGGG</gDNA_template>
            <first_frame> F  V  T  K  Y  F  N  S  S  N  L  G  T  G  I  T  S  L  I  F  A  T  N  L  Q  D  G  P  S  Y  P  *  R  T  V  T  R  F  V  I  P  H  L  V  R  L  P  H  L  P  S  A  A  C  L  R  C  H  L  R  T  V  T  S  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  S  L  K  I  S  A  F  S  F  R  Q  I  S  C  K  T  K  K  N  L  Y  K  N  *  H  K  K  A  Y  R  H  N  K  L  R  K  R  Y  *  L  Y  R  E  T  T  V  Y  Q  G </first_frame>
            <second_frame>  S  L  P  N  T  S  T  L  R  I  W  V  L  G  *  L  L  L  S  S  R  R  T  C  R  T  D  R  H  I  H  D  G  P  S  Q  D  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  V  Y  A  A  T  Y  G  P  S  Q  A  R  R  T  V  I  S  S  V  G  G  L  F  C  I  F  R  S  K  S  P  H  S  A  L  D  R  F  P  A  K  Q  R  K  T  Y  I  K  I  S  T  K  R  L  T  D  T  I  N  *  G  K  G  I  N  Y  T  V  K  P  R  Y  I  R   </second_frame>
            <third_frame>   R  Y  Q  I  L  Q  L  F  E  S  G  Y  W  D  N  F  S  Y  L  R  D  E  L  A  G  R  T  V  I  S  M  T  D  R  H  K  I  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  L  S  T  L  P  P  T  D  R  H  K  H  D  G  P  S  *  A  P  *  V  V  S  S  A  F  F  A  Q  N  L  R  I  Q  L  *  T  D  F  L  Q  N  K  E  K  L  I  *  K  L  A  Q  K  G  L  Q  T  Q  *  I  K  E  K  V  L  I  I  P  *  N  H  G  I  S  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1540" stop="1761"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTWSDFPIFLQQLVYAATYGPSQARRTVISSVGGLFCIFRSKSPHSALDRFPAKQRKTYIKISTKRLTDTIN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1518" stop="1730"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTVTRFVIPHLVRLPHLPSAACLRCHLRTVTSTTDRHKLRRWSLLHFSLKISAFSFRQISCKTKKNLYKN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1424" stop="1630"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYQILQLFESGYWDNFSYLRDELAGRTVISMTDRHKIRNPTLGQTSPSSFSSLSTLPPTDRHKHDGPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="19685" PGL_stop="18245"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19685" e_stop="18245"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="19685" e_stop="18245" e_length="1441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19685" stop="19127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19525" stop="18828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18964" stop="18245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18961" stop="18298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACACGAGTAGGCATATCAAGAAATTCACAATGTAAATGTAGACCATTAGCAAATGAGGAAGATACATAAGAAAAGGTGGATCCAAGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCTGCTTCAGACCGCACAGGGAAAGCGTAACAATGGGCCCCATCGTTCGTCTGTCCGTTGCCCCTACCATGTTATGATGTAGTGGCTCCAGCTTGCCTATCACCTTGGCCGTTTTGGAGACCACGATTTCCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCCCCACATCCGTAACACTCTCTGGAGTCAAGCATAGGTCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCTTCCAACTACAGTCTGTAGTGAATACTGAATTGGTCGGACTGAGTAACTTCCCGAACCGTGTCCTCCAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAATGAAGTCGTCTGGCTTCACTCCTTCCCCTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCGGCTATCTGTAAGGCCGAAATCCGCAATGCTGACCTCAACCCCTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCTTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAGGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGTCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCTGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGGAGCCTGAGATGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTTGTTCATTTTCCCCATCCTACCCTTCTCTTATTACCTCCTCAATCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACT</gDNA_template>
            <first_frame> K  H  E  *  A  Y  Q  E  I  H  N  V  N  V  D  H  *  Q  M  R  K  I  H  K  K  R  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  L  L  Q  T  A  Q  G  K  R  N  N  G  P  H  R  S  S  V  R  C  P  Y  H  V  M  M  *  W  L  Q  L  A  Y  H  L  G  R  F  G  D  H  D  F  L  D  H  H  A  L  Q  K  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  C  N  S  V  L  D  N  F  S  *  Y  V  Q  S  P  H  I  R  N  T  L  W  S  Q  A  *  V  S  R  R  S  V  D  R  S  E  V  V  F  Q  L  Q  S  V  V  N  T  E  L  V  G  L  S  N  F  P  N  R  V  L  Q  C  K  H  H  *  T  H  L  P  F  E  T  F  L  M  S  M  S  *  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  R  L  S  V  R  P  K  S  A  M  L  T  S  T  P  S  Q  T  G  E  F  A  L  V  D  *  N  T  V  G  W  H  T  G  I  M  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  R  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  S  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  I  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  L  I  Q  H  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  E  P  E  M  L  V  Q  K  T  L  G  V  S  G  P  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  S  A  L  V  H  F  P  H  P  T  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  D  </first_frame>
            <second_frame>  N  T  S  R  H  I  K  K  F  T  M  *  M  *  T  I  S  K  *  G  R  Y  I  R  K  G  G  S  K  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  C  F  R  P  H  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  L  A  V  L  E  T  T  I  S  S  T  T  T  P  S  R  K  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  V  T  L  F  W  T  I  S  P  N  M  S  S  L  P  T  S  V  T  L  S  G  V  K  H  R  S  L  G  E  V  L  T  G  L  R  W  S  S  N  Y  S  L  *  *  I  L  N  W  S  D  *  V  T  S  R  T  V  S  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  N  E  V  V  W  L  H  S  F  P  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  G  Y  L  *  G  R  N  P  Q  C  *  P  Q  P  L  H  K  P  A  N  S  L  L  W  T  E  T  Q  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  I  D  R  H  L  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  G  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  *  F  S  T  L  E  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  W  S  L  R  C  W  C  R  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  L  L  N  R  W  R  S  H  C  P  S  I  R  W  T </second_frame>
            <third_frame>   T  R  V  G  I  S  R  N  S  Q  C  K  C  R  P  L  A  N  E  E  D  T  *  E  K  V  D  P  R  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  T  G  K  A  *  Q  W  A  P  S  F  V  C  P  L  P  L  P  C  Y  D  V  V  A  P  A  C  L  S  P  W  P  F  W  R  P  R  F  P  R  P  P  R  P  P  E  K  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  L  P  T  T  V  C  S  E  Y  *  I  G  R  T  E  *  L  P  E  P  C  P  P  V  *  A  P  L  N  S  P  P  F  R  N  L  F  D  V  D  V  V  M  K  S  S  G  F  T  P  S  P  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  A  D  L  N  P  F  T  N  R  R  I  R  S  C  G  L  K  H  S  W  V  A  Y  R  D  N  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  V  S  V  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  H  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  G  A  *  D  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  C  T  C  S  F  S  P  S  Y  P  S  L  I  T  S  S  I  G  G  G  V  T  A  L  V  S  D  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19143" stop="18754"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APLNSPPFRNLFDVDVVMKSSGFTPSPSITKSTTSWKDFAVAAICKAEIRNADLNPFTNRRIRSCGLKHSWVAYRDNARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGVSVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19453" stop="19199"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITLAVLETTISSTTTPSRKTASTMTTSTSSYWGSVTLFWTISPNMSSLPTSVTLSGVKHRSLGEVLTGLRWSSNYSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="20813" PGL_stop="20455"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20813" e_stop="20455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="20813" e_stop="20455" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20813" stop="20455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATAACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCATGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAATAGTAGTCTTTGGCACA</gDNA_template>
            <first_frame> V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  *  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  C  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  *  *  S  L  A   </first_frame>
            <second_frame>  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  N  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  H  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  R  S  N  S  S  L  W  H  </second_frame>
            <third_frame>   L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  M  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  I  V  V  F  G  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20688" stop="20491"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIMLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="22365" PGL_stop="22189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22365" e_stop="22189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="22365" e_stop="22189" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22365" stop="22189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAAAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTAAGGCTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  *  G  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  I  P  L  R  V  K  S  Y  P  N  D  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  F  A  K  A  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  F  R  *  G  *  K  A  I  P  M  T  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0133O02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="22426" PGL_stop="23188"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22426" e_stop="23188"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="22426" e_stop="23188" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22426" stop="23188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATTCGATAGAGAAAGTGAAGTCTATTCAAGAAAAGATTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGTGAGCAAGTCTTGTTGAAAGTTTCACCAATGAAAGGGGTGATGCGGTTTGGAAAAAGGGGGAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTACATCCGGTATTACATGTGTCGATGTTAAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAACCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCCGTTGAAGAATCTACTTGGGAGAAGGAGGCGGATATGCGAGAAAAATACCCACATCTGTTTACAGATTCAAGTACTCCTTTTCGCCCTTGTTTTCCTTCTTTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAACAAATTTTAATTCTGGAAAAACTGGCAGAAGCGACGGACCCCATGACGGAGCGTCAAGGGCACGACGGACCGTCGCAGAGTCTCGTTTCAAAACACTTAGAAAATTTGAAATTGGGTATTGAAAATCGACTCTCT</gDNA_template>
            <first_frame> G  F  D  R  E  S  E  V  Y  S  R  K  D  S  S  G  A  K  *  T  K  R  I  C  R  S  K  G  *  R  L  R  V  H  G  G  *  A  S  L  V  E  S  F  T  N  E  R  G  D  A  V  W  K  K  G  E  T  K  S  K  V  H  W  T  I  *  S  T  *  A  S  R  R  G  G  L  *  V  S  L  A  S  R  A  V  R  S  T  S  G  I  T  C  V  D  V  K  K  I  P  W  G  W  K  L  H  Y  P  L  G  F  S  F  A  *  *  E  L  V  L  *  G  G  T  C  C  Y  F  R  *  R  S  S  Q  V  E  V  K  R  D  C  I  H  Q  G  A  M  E  E  S  T  R  *  R  I  Y  L  G  E  G  G  G  Y  A  R  K  I  P  T  S  V  Y  R  F  K  Y  S  F  S  P  L  F  S  F  F  *  S  F  G  D  E  R  W  V  N  W  Y  L  L  *  R  P  V  *  S  F  *  A  T  N  F  N  S  G  K  T  G  R  S  D  G  P  H  D  G  A  S  R  A  R  R  T  V  A  E  S  R  F  K  T  L  R  K  F  E  I  G  Y  *  K  S  T  L  </first_frame>
            <second_frame>  D  S  I  E  K  V  K  S  I  Q  E  K  I  L  A  A  Q  S  R  Q  K  E  Y  A  D  R  K  V  R  D  L  E  F  M  E  G  E  Q  V  L  L  K  V  S  P  M  K  G  V  M  R  F  G  K  R  G  K  L  S  P  R  Y  I  G  P  F  E  V  L  K  R  V  G  E  V  A  Y  E  L  A  L  P  P  G  L  S  G  V  H  P  V  L  H  V  S  M  L  K  R  Y  H  G  D  G  N  Y  I  I  R  W  D  S  V  L  L  D  E  N  L  S  Y  E  E  E  P  V  A  I  L  D  R  E  V  R  K  L  R  S  R  E  I  A  S  I  K  V  Q  W  K  N  R  P  V  E  E  S  T  W  E  K  E  A  D  M  R  E  K  Y  P  H  L  F  T  D  S  S  T  P  F  R  P  C  F  P  S  F  D  R  S  G  T  N  D  G  *  I  G  I  Y  C  N  D  L  F  S  R  F  E  Q  Q  I  L  I  L  E  K  L  A  E  A  T  D  P  M  T  E  R  Q  G  H  D  G  P  S  Q  S  L  V  S  K  H  L  E  N  L  K  L  G  I  E  N  R  L  S </second_frame>
            <third_frame>   I  R  *  R  K  *  S  L  F  K  K  R  F  *  R  R  K  V  D  K  K  N  M  Q  I  E  R  L  E  T  *  S  S  W  R  V  S  K  S  C  *  K  F  H  Q  *  K  G  *  C  G  L  E  K  G  G  N  *  V  Q  G  T  L  D  H  L  K  Y  L  S  E  *  E  R  W  L  M  S  *  P  C  L  Q  G  C  P  E  Y  I  R  Y  Y  M  C  R  C  *  K  D  T  M  G  M  E  T  T  L  S  V  G  I  Q  F  C  L  M  R  T  C  L  M  R  R  N  L  L  L  F  *  I  E  K  F  A  S  *  G  Q  E  R  L  H  P  S  R  C  N  G  R  I  D  P  L  K  N  L  L  G  R  R  R  R  I  C  E  K  N  T  H  I  C  L  Q  I  Q  V  L  L  F  A  L  V  F  L  L  L  I  V  R  G  R  T  M  G  K  L  V  S  I  V  T  T  C  L  V  V  L  S  N  K  F  *  F  W  K  N  W  Q  K  R  R  T  P  *  R  S  V  K  G  T  T  D  R  R  R  V  S  F  Q  N  T  *  K  I  *  N  W  V  L  K  I  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22427" stop="23011"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSIEKVKSIQEKILAAQSRQKEYADRKVRDLEFMEGEQVLLKVSPMKGVMRFGKRGKLSPRYIGPFEVLKRVGEVAYELALPPGLSGVHPVLHVSMLKRYHGDGNYIIRWDSVLLDENLSYEEEPVAILDREVRKLRSREIASIKVQWKNRPVEESTWEKEADMREKYPHLFTDSSTPFRPCFPSFDRSGTNDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="28311" PGL_stop="28904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28311" e_stop="28396"/>
            <exon e_start="28473" e_stop="28904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.953"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="28311" e_stop="28396" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28397" i_stop="28472" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="28473" e_stop="28904" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28311" stop="28396"/>
              <exon start="28473" stop="28904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATTAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCAC : GTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACATTCCGACACTAGGATAGAATATGGATCGGGTGCCACGTTCTGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTATCACGTACCGACACGATGGGAATAAAGATAATGAATCTTGAAAGATATTAATATATTCAATCTAATGAACCGAATTCCCAAATGAGTATGATGACGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAAGGTTATGCTAACTGTGAATGTTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATAGT</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  I  N  E  S  S  E  I  R  G  S  G  A  T :   F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  *  D  R  I  W  I  G  C  H  V  L  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  Y  H  V  P  T  R  W  E  *  R  *  *  I  L  K  D  I  N  I  F  N  L  M  N  R  I  P  K  *  V  *  *  R  G  V  S  P  H  *  C  A  W  C  C  N  Q  R  L  C  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  L  M  K  V  V  R  L  G  D  R  V  P   : R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  H  S  D  T  R  I  E  Y  G  S  G  A  T  F  W  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  I  T  Y  R  H  D  G  N  K  D  N  E  S  *  K  I  L  I  Y  S  I  *  *  T  E  F  P  N  E  Y  D  D  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  A  N  C  E  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  *  </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  *  *  K  *  *  D  *  G  I  G  C  H  :  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  I  P  T  L  G  *  N  M  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  M  G  I  K  I  M  N  L  E  R  Y  *  Y  I  Q  S  N  E  P  N  S  Q  M  S  M  M  T  R  R  E  S  S  L  M  C  L  V  L  *  P  K  V  M  L  T  V  N  V  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0133O02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="29002" PGL_stop="29718"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29002" e_stop="29718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="29002" e_stop="29718" e_length="717"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29002" stop="29718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCAAACGTGCCATCGTCTTCAACTCAACACTAATTCTAGCCACTCTTCGTCACACCGGATCTTCAGGGTGAGCTAATGGTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATAGACTAGCTTCTTATGTATTTTTTAGCTTTTAGAATACTCTTAGTTTAGTCATTTGATCATAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATAGAAGTTGATTATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTGTATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATCGGAGGGTAAGTGTGGGTGCTAGTCGCGGTCCGGATGTTGGTCGTGACAAACTTTGGATCAGAGCATTAGGTTCTTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGTCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTTTTTCATTCTTGGTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACAACTACACCAACACCAACACCAACACCGGCGGGACAGGGTGCGTCTGAGCCAGCCACTGCGACTGTAG</gDNA_template>
            <first_frame> Q  Q  T  C  H  R  L  Q  L  N  T  N  S  S  H  S  S  S  H  R  I  F  R  V  S  *  W  F  *  L  G  L  D  L  L  L  Q  V  L  M  P  *  T  S  G  I  D  *  L  L  M  Y  F  L  A  F  R  I  L  L  V  *  S  F  D  H  R  C  S  C  G  D  D  F  Q  I  L  G  N  D  K  F  *  V  I  E  V  D  Y  W  F  L  L  M  S  L  S  L  P  H  Y  F  M  C  I  L  Y  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  L  V  A  V  R  M  L  V  V  T  N  F  G  S  E  H  *  V  L  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  F  S  F  L  V  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  Q  L  H  Q  H  Q  H  Q  H  R  R  D  R  V  R  L  S  Q  P  L  R  L  * </first_frame>
            <second_frame>  S  K  R  A  I  V  F  N  S  T  L  I  L  A  T  L  R  H  T  G  S  S  G  *  A  N  G  S  S  L  D  W  I  F  F  F  K  S  *  C  L  E  L  P  A  *  T  S  F  L  C  I  F  *  L  L  E  Y  S  *  F  S  H  L  I  I  D  V  L  V  V  M  T  S  R  F  W  G  M  I  S  F  E  L  *  K  L  I  I  G  F  Y  *  *  V  *  V  F  R  I  T  L  C  V  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  S  E  G  K  C  G  C  *  S  R  S  G  C  W  S  *  Q  T  L  D  Q  S  I  R  F  F  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  V  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  H  S  W  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  N  Y  T  N  T  N  T  N  T  G  G  T  G  C  V  *  A  S  H  C  D  C   </second_frame>
            <third_frame>   A  N  V  P  S  S  S  T  Q  H  *  F  *  P  L  F  V  T  P  D  L  Q  G  E  L  M  V  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  R  L  A  S  Y  V  F  F  S  F  *  N  T  L  S  L  V  I  *  S  *  M  F  L  W  *  *  L  P  D  F  G  E  *  *  V  L  S  Y  R  S  *  L  L  V  F  I  N  E  F  K  S  S  A  L  L  Y  V  Y  I  I  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  G  P  D  V  G  R  D  K  L  W  I  R  A  L  G  S  L  V  S  S  H  K  N  K  S  S  R  V  L  R  N  G  R  G  T  S  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  F  F  I  L  G  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  T  P  A  G  Q  G  A  S  E  P  A  T  A  T  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29476" stop="29718"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFFFSFLVLLESNWYLGDTNWYLTIFTLFRRWLELEQQLHQHQHQHRRDRVRLSQPLRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="29792" PGL_stop="30345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29792" e_stop="30345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="29792" e_stop="30345" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29792" stop="30345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTATCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATTAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTTTGTCTTATCTTAGCGGGTTATCTAATCAGGGTTAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCAAGGAGGCCTCATTGGAAATAGGCATGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGACTACAATTTTCTGGTTGATTGTCATGAGCTACTACACAAGATGGGTATAGTAGAAGGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGATCACATGTTGAGTGTCAACCGACAGAAGCAACACCTATGACTTGAGCCTCATTCT</gDNA_template>
            <first_frame> T  Y  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  S  K  R  G  *  G  R  G  E  *  T  S  A  K  L  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  F  V  L  S  *  R  V  I  *  S  G  L  G  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  Q  G  G  L  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  *  L  Q  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  R  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  I  T  C  *  V  S  T  D  R  S  N  T  Y  D  L  S  L  I   </first_frame>
            <second_frame>  P  I  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  *  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  S  Y  L  S  G  L  S  N  Q  G  *  A  P  P  V  F  S  A  P  A  P  Q  V  P  E  V  Q  H  A  A  T  M  A  P  R  K  E  A  S  L  E  I  G  M  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  K  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  D  Y  N  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  G  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  T  P  M  T  *  A  S  F  </second_frame>
            <third_frame>   L  S  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  R  V  R  K  G  R  M  N  K  C  K  I  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  C  L  I  L  A  G  Y  L  I  R  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  R  L  L  W  L  P  A  R  R  P  H  W  K  *  A  C  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  I  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  T  T  I  F  W  L  I  V  M  S  Y  Y  T  R  W  V  *  *  K  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  D  H  M  L  S  V  N  R  Q  K  Q  H  L  *  L  E  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29967" stop="30335"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APPVFSAPAPQVPEVQHAATMAPRKEASLEIGMFPRLTTGPIMTNDQHKLFSKFLKLKPPVFKGAESEDDYNFLVDCHELLHKMGIVEGFGVEFVTYQFQGNAKMWWRSHVECQPTEATPMT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="32363" PGL_stop="31113"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32363" e_stop="31113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="32363" e_stop="31113" e_length="1251"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32363" stop="31685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31915" stop="31257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31443" stop="31113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTTACCCAATTCTTCACTCTCTCAATCTTAGAAGGATCACCATCACTCAATCCTTAGAAACCACGTGCCCCATGAAGGACACTGCATCTAGCCAGAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGGTTAAAAATCTCGTTCATCAAACTCATGAACGTAGCAGGGACATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCCGTCTTTGGCACGTCCGTTGCCCGTATTTTCAATTGATGATAGCCGGATCTGAAGTCAATCTTAGAGAAGACAGAAGCACCTTCTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTACCGGTAGTCTATGCACATCCGAAAGCTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCCTTGTTCAACAACTCTTGAAGTTTGACCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTAACCGGTTCAAGGTCAATAAAGAAGTCAATATACCTATCTGGTGGCATACCAGGAAGATCTATAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATTGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCAGCGGATGGGAATTGTAGTCACCCTCCCAAACTAACGGATCGATCCCAGGCTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGTTCCTCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGACTAGAAACACCAATAGGCATATCAAGTAATTCACAATGTAAATTCAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGA</gDNA_template>
            <first_frame> V  L  P  N  S  S  L  S  Q  S  *  K  D  H  H  H  S  I  L  R  N  H  V  P  H  E  G  H  C  I  *  P  E  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  V  K  N  L  V  H  Q  T  H  E  R  S  R  D  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  R  L  W  H  V  R  C  P  Y  F  Q  L  M  I  A  G  S  E  V  N  L  R  E  D  R  S  T  F  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  A  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  L  V  Q  Q  L  L  K  F  D  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  N  R  F  K  V  N  K  E  V  N  I  P  I  W  W  H  T  R  K  I  Y  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  *  R  H  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  Q  R  M  G  I  V  V  T  L  P  N  *  R  I  D  P  R  L  G  *  H  H  R  F  S  I  T  I  Q  D  R  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  I  Y  I  S  V  V  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  T  R  N  T  N  R  H  I  K  *  F  T  M  *  I  Q  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  R </first_frame>
            <second_frame>  S  Y  P  I  L  H  S  L  N  L  R  R  I  T  I  T  Q  S  L  E  T  T  C  P  M  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  S  F  I  K  L  M  N  V  A  G  T  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  E  A  P  S  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  Y  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  L  T  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  T  G  S  R  S  I  K  K  S  I  Y  L  S  G  G  I  P  G  R  S  I  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  S  G  W  E  L  *  S  P  S  Q  T  N  G  S  I  P  G  L  A  N  I  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  F  L  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  L  E  T  P  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T   </second_frame>
            <third_frame>   L  T  Q  F  F  T  L  S  I  L  E  G  S  P  S  L  N  P  *  K  P  R  A  P  *  R  T  L  H  L  A  R  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  D  P  N  M  G  *  K  S  R  S  S  N  S  *  T  *  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  P  S  L  A  R  P  L  P  V  F  S  I  D  D  S  R  I  *  S  Q  S  *  R  R  Q  K  H  L  L  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  T  G  S  L  C  T  S  E  S  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  P  C  S  T  T  L  E  V  *  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  *  P  V  Q  G  Q  *  R  S  Q  Y  T  Y  L  V  A  Y  Q  E  D  L  *  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  L  K  A  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  A  D  G  N  C  S  H  P  P  K  L  T  D  R  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  S  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  S  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  D  *  K  H  Q  *  A  Y  Q  V  I  H  N  V  N  S  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32270" stop="31932"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PELTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYIINKYDHKEIQIWVKNLVHQTHERSRDIRKTKRHHYKFVMPIPGSKSRLWHVRCPYFQLMIAGSEVNLREDRSTF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31708" stop="31463"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVTGSRSIKKSIYLSGGIPGRSIGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRSGWEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="34419" PGL_stop="35169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34419" e_stop="35169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="34419" e_stop="35169" e_length="751"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34419" stop="35131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34419" stop="35014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34419" stop="34944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34490" stop="35169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34490" stop="34848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGAAAAATTGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTTTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCCTTAGACACCACGTGCCCCAAGAATGACATTGAATCTAGCCAAAACTCACCCTTGGAGAATTTGGCATAAAGCTTTTTCTCTCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCTTACCTGGTCCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTGAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAGTGCGGGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCTTTCGTCTTCACAAACAGAACAGGAGCACCCCAAGAAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGCAACTCTTGCAGTTATGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATTGGGCGAGTA</gDNA_template>
            <first_frame> E  S  L  E  K  L  T  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  F  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  H  H  V  P  Q  E  *  H  *  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  S  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  F  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  L  P  G  P  K  S  S  L  W  H  I  C  C  P  Y  F  E  L  M  I  T  G  S  Q  V  N  L  R  K  D  T  S  T  L  *  L  I  E  Q  V  I  S  A  G  N  G  I  F  V  L  N  S  Y  L  V  Q  L  S  V  V  Y  A  H  P  K  T  P  I  F  R  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  A  *  Q  L  L  Q  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  W  A  S  </first_frame>
            <second_frame>  N  P  L  K  N  *  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  F  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  Q  S  L  D  T  T  C  P  K  N  D  I  E  S  S  Q  N  S  P  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  L  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  V  R  G  M  G  Y  L  F  L  I  V  T  L  F  N  C  L  *  S  M  H  I  R  K  L  P  S  F  V  F  T  N  R  T  G  A  P  Q  E  D  A  L  G  L  I  K  P  L  L  S  N  S  C  S  Y  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  I  G  R  V </second_frame>
            <third_frame>   I  P  *  K  I  D  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  N  P  *  T  P  R  A  P  R  M  T  L  N  L  A  K  T  H  P  W  R  I  W  H  K  A  F  S  L  S  T  F  P  I  P  F  S  N  A  P  H  V  L  S  C  S  L  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  L  T  W  S  E  K  Q  S  L  A  H  L  L  P  V  F  *  I  D  D  N  R  I  S  S  Q  S  *  K  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  W  D  I  C  S  *  *  L  P  C  S  T  V  C  S  L  C  T  S  E  N  S  H  L  S  S  S  Q  T  E  Q  E  H  P  K  K  M  H  L  V  *  *  S  L  C  L  A  T  L  A  V  M  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  L  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34683" stop="34922"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEIQIWLKNPVHQAHESSRGIRKTKRHHYKFVMPLPGPKSSLWHICCPYFELMITGSQVNLRKDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34615" stop="34812"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYISISSINTITKRSKYGLKIPFIKLMKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="35411" PGL_stop="35741"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35411" e_stop="35741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="35411" e_stop="35741" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35411" stop="35741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTTTTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAGTCCAAAATCGCAAAATTCGAAGAAATCCAAGTCATAACCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAAACAAGACCTATATACTTTTTCGGCAATCACAGAATCACCCACCGGAGTAGAAACATGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATATGAAAATGTGGAGCAAGGATCAAATAATATAGAAGCCATGCAATCACAAATCAA</gDNA_template>
            <first_frame> D  F  S  Q  A  W  L  T  S  L  F  *  H  Y  S  P  K  S  Q  N  S  K  K  S  K  S  *  P  E  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  S  P  N  K  T  Y  I  L  F  R  Q  S  Q  N  H  P  P  E  *  K  H  E  *  V  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  I  H  M  K  M  W  S  K  D  Q  I  I  *  K  P  C  N  H  K  S  </first_frame>
            <second_frame>  I  F  P  R  L  G  *  R  H  C  F  S  I  T  V  Q  N  R  K  I  R  R  N  P  S  H  N  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  I  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  F  F  G  N  H  R  I  T  H  R  S  R  N  M  N  R  Y  V  K  Q  F  T  M  *  I  K  T  I  S  K  *  G  R  Y  I  *  K  C  G  A  R  I  K  *  Y  R  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   F  F  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  E  E  I  Q  V  I  T  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  K  Q  D  L  Y  T  F  S  A  I  T  E  S  P  T  G  V  E  T  *  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  E  E  D  T  Y  E  N  V  E  Q  G  S  N  N  I  E  A  M  Q  S  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0133O02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="37062" PGL_stop="36509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37062" e_stop="36509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="37062" e_stop="36509" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37062" stop="36509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTGGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATTGGGAAAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCATAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGAAGGTACAACATGAGGCTATTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGAAAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTAAAACCTCCAGTCTTCAAGGTTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGTACACCGAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATAAGTTGCGCATCATTCT</gDNA_template>
            <first_frame> A  W  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  R  G  G  L  G  K  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  I  D  D  Q  S  G  S  C  L  S  *  W  V  I  *  S  R  P  D  T  S  S  V  F  C  T  S  T  S  G  S  E  G  T  T  *  G  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  E  K  *  S  A  *  T  F  Q  *  V  L  E  I  K  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  V  H  R  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  K  L  R  I  I   </first_frame>
            <second_frame>  P  G  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  D  W  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  *  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  K  V  Q  H  E  A  I  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  K  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  V  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  Q  F  G  V  E  F  V  T  Y  Q  F  Q  G  Y  T  E  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  I  S  C  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  I  G  K  M  N  K  C  R  M  R  N  C  H  P  N  L  P  H  R  *  S  I  R  F  L  L  I  L  V  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  V  *  L  Q  G  L  *  *  K  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  L  L  N  L  R  M  P  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  S  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  V  A  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36938" stop="36510"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MINQVLAYLSGLSDQGQTPPVFSAPAPQVPKVQHEAIVAPRMDASLEIGTFPRLTTGPIMKNDQHELFSKFLKLKPPVFKVAESEDAYDFLVDCHELLHKMGIVEQFGVEFVTYQFQGYTEMWWRSHVECQPTEAPPISCASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="37799" PGL_stop="37580"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37799" e_stop="37580"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="37799" e_stop="37580" e_length="220"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37799" stop="37580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTACACCGGATTTCAGGGAGAGCTAAAGCTTCTATCTTGGACTGGATCCTCCTCTTCATGTCTTGATGCCTTGAAGTCCCGGCATGGACTAGATGTTTATGTATTTTAGCTTCTTAGATACTCATTAGATTTAGTAATTTTAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAAGAGTTGTTGAGTTTTTAGAAGTTATTGAA</gDNA_template>
            <first_frame> S  L  H  R  I  S  G  R  A  K  A  S  I  L  D  W  I  L  L  F  M  S  *  C  L  E  V  P  A  W  T  R  C  L  C  I  L  A  S  *  I  L  I  R  F  S  N  F  K  *  M  F  L  *  *  *  L  P  D  F  G  D  N  K  S  C  *  V  F  R  S  Y  *  </first_frame>
            <second_frame>  H  Y  T  G  F  Q  G  E  L  K  L  L  S  W  T  G  S  S  S  S  C  L  D  A  L  K  S  R  H  G  L  D  V  Y  V  F  *  L  L  R  Y  S  L  D  L  V  I  L  S  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  R  V  V  E  F  L  E  V  I  E </second_frame>
            <third_frame>   I  T  P  D  F  R  E  S  *  S  F  Y  L  G  L  D  P  P  L  H  V  L  M  P  *  S  P  G  M  D  *  M  F  M  Y  F  S  F  L  D  T  H  *  I  *  *  F  *  V  D  V  L  V  M  M  T  S  R  F  W  G  *  *  E  L  L  S  F  *  K  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0133O02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="59002" PGL_stop="49158"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55563" e_stop="53491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="55563" e_stop="53491" e_length="2073"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55563" stop="54851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55563" stop="54968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55563" stop="55038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55492" stop="55134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54974" stop="54213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54974" stop="54314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54280" stop="53491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54278" stop="53745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGTAGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCTTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCCTAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCGTTAATGAATACAATCACAAAGAGATCCAAATATGGCTTAAAAATTCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACTTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCTTTTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGGCACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTGATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCTGAAAACTCTCATCCTTCTTCTTCTCAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTTGTCTAATGAAGCCTTTGCTCAACAACTCTTGTAGTTGGGCTTTTAACTCCCTTAACTCAGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGGAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCCTAGCACGAATAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTAACCCTCCCACACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTGTTAGCATTACAATCCAAAATCAAAAATTGCGAAGAAAGCCAAGTCATACCCAGGATTACATCCAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCCACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACATTGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCAATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCGGACCGCCTAGGGAAAGCGTAACAATGGGCCCTATTGTTTGTCTGTCCATTGACCCTACCATGTTGTGATGTAGTGGCTCTCGTTTTCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTAGGGGTCTATAACTCTGTTTTGGACATTTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTTAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCCTGTCCTCTAGAGTAAGAACCATTAAGGTCACCTCCTTTTCGAAACCTCTTTGATGTCGATGCCACGGTAAATTCATCTGGCTTCACTCCTTCCACCTCTACCACAAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCTGCTACCTGTAAGGCTGAAATCCGCAACTCTTACCTCAACCCCTTCACAAAATGACGAATCCACTCTTGTGGACTGAAACAAAGTTGAGTGGCATATTTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCTTCTTCCTATCCCTCAAAGTCCGAGGGATATACTT</gDNA_template>
            <first_frame> E  S  L  D  K  S  V  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  F  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  L  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  I  V  N  E  Y  N  H  K  E  I  Q  I  W  L  K  N  S  I  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  L  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  L  L  M  I  T  R  S  Q  V  N  L  R  E  G  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  D  G  Y  L  V  Q  L  P  V  V  Y  A  H  L  K  T  L  I  L  L  L  L  K  Q  N  R  S  T  P  R  R  C  S  L  S  N  E  A  F  A  Q  Q  L  L  *  L  G  F  *  L  P  *  L  S  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  H  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  P  S  T  N  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  K  R  I  C  P  R  L  G  *  R  H  R  V  S  I  T  I  Q  N  Q  K  L  R  R  K  P  S  H  T  Q  D  Y  I  Q  I  I  H  F  *  D  N  Q  I  Y  I  S  V  S  P  H  K  V  H  Q  T  R  P  I  Y  L  F  H  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  L  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  N  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  G  P  P  R  E  S  V  T  M  G  P  I  V  C  L  S  I  D  P  T  M  L  *  C  S  G  S  R  F  P  I  T  S  A  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  H  *  G  S  I  T  L  F  W  T  F  P  P  N  M  S  S  L  P  T  S  I  T  L  S  G  V  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  N  *  V  T  S  R  T  L  S  S  R  V  R  T  I  K  V  T  S  F  S  K  P  L  *  C  R  C  H  G  K  F  I  W  L  H  S  F  H  L  Y  H  K  I  Y  H  F  L  E  G  F  C  R  S  C  Y  L  *  G  *  N  P  Q  L  L  P  Q  P  L  H  K  M  T  N  P  L  L  W  T  E  T  K  L  S  G  I  F  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  L  L  P  I  P  Q  S  P  R  D  I  L </first_frame>
            <second_frame>  N  P  L  T  N  R  *  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  Q  S  L  E  T  T  F  P  K  K  D  T  A  S  S  Q  N  L  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  I  S  L  M  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  F  *  *  *  P  D  L  K  S  I  L  E  K  A  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  L  M  V  T  L  F  N  C  R  *  S  M  H  I  *  K  L  S  S  F  F  F  S  N  K  T  G  A  P  Q  G  D  A  V  C  L  M  K  P  L  L  N  N  S  C  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  G  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  I  K  E  M  I  R  T  G  L  E  V  *  *  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  K  N  C  E  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  F  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  H  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  L  G  K  A  *  Q  W  A  L  L  F  V  C  P  L  T  L  P  C  C  D  V  V  A  L  V  F  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  R  G  L  *  L  C  F  G  H  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  L  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  M  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  R  S  P  P  F  R  N  L  F  D  V  D  A  T  V  N  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  Y  L  N  P  F  T  K  *  R  I  H  S  C  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  F  F  L  S  L  K  V  R  G  I  Y   </second_frame>
            <third_frame>   I  P  *  Q  I  G  S  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  N  L  *  K  P  R  S  P  R  R  T  L  H  L  A  K  T  Y  T  *  R  T  W  P  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  Y  R  *  *  I  Q  S  Q  R  D  P  N  M  A  *  K  F  H  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  F  D  D  N  Q  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  *  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  Q  F  V  *  *  S  L  C  S  T  T  L  V  V  G  L  L  T  P  L  T  Q  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  E  A  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  *  R  R  *  Y  A  P  D  W  K  C  S  N  P  P  T  Q  T  D  L  S  Q  A  W  L  T  S  P  C  *  H  Y  N  P  K  S  K  I  A  K  K  A  K  S  Y  P  G  L  H  P  N  H  P  F  L  R  *  P  N  L  H  K  C  F  S  P  Q  S  S  P  N  K  T  Y  I  P  F  P  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  I  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  Q  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  R  T  A  *  G  K  R  N  N  G  P  Y  C  L  S  V  H  *  P  Y  H  V  V  M  *  W  L  S  F  S  H  H  L  G  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  P  L  G  V  Y  N  S  V  L  D  I  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  W  S  Q  A  *  V  S  *  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  S  N  L  Q  N  P  V  L  *  S  K  N  H  *  G  H  L  L  F  E  T  S  L  M  S  M  P  R  *  I  H  L  A  S  L  L  P  P  L  P  Q  N  L  P  L  L  G  R  I  L  P  *  L  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  T  L  V  D  *  N  K  V  E  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  S  S  Y  P  S  K  S  E  G  Y  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55398" stop="55060"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGLKLFLPQHFQYHSQMLLMFLLTFRVYQYIVNEYNHKEIQIWLKNSIHQTHERSRGIRKTKRHHYKFVMPILGSKSSLWHIRCPYFLLMITRSQVNLREGTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54836" stop="54591"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIGGTWVVSSLRCAKKAKHPLLTIFLARIKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58436" e_stop="57936"/>
            <exon e_start="50886" e_stop="50776"/>
            <exon e_start="49659" e_stop="49655"/>
            <exon e_start="49196" e_stop="49158"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.898"/>
          <exon-intron don_prob="0.000" acc_prob="0.246" e_score="0.937"/>
          <exon-intron don_prob="0.117" acc_prob="0.089" e_score="0.600"/>
          <exon-only e_score="0.513"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.898">
            <gDNA_exon_boundary e_start="58436" e_stop="57936" e_length="501"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="57935" i_stop="50887" i_length="7049"/>
          </intron>
          <exon e_serial="2" e_score="0.937">
            <gDNA_exon_boundary e_start="50886" e_stop="50776" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.246">
            <gDNA_intron_boundary i_start="50775" i_stop="49660" i_length="1116"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="49659" e_stop="49655" e_length="5"/>
          </exon>
          <intron i_serial="3" don_prob="0.117" acc_prob="0.089">
            <gDNA_intron_boundary i_start="49654" i_stop="49197" i_length="458"/>
          </intron>
          <exon e_serial="4" e_score="0.513">
            <gDNA_exon_boundary e_start="49196" e_stop="49158" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58436" stop="57936"/>
              <exon start="50886" stop="50776"/>
              <exon start="49659" stop="49655"/>
              <exon start="49196" stop="49158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349296" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAAAAACCATAACCTACCTCCACCGAAGACTAGTGATCAAGCAAGCAAATTCCCAAAGATTTGTTTCTCTTCGTTTCTCCTCTTTCTCGTTGGACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAAACCCTCTTTCTTTTTCCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAGCTATATAATTAAAGCAGGAATAGTCAAAAACGTCCCTTAAAACAATTGAGGAATTCCGACTCAGACTGGGATTTACGCAGCCTGTGACGGCCCGTCGCGCCTGCGACGGTCCGTCTTGCTGCTCCGTCACAGAGTTCAGAGACTCAATTTGTCTGAAGAGTCTGTGACGGTCCGTCACACCT : GTGACGGTCCGTCCTTCCATTCCGTTACGAATTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAAACCCTGCGACGGTCCGTCGTGG : CAAGG : AAGTTCCTACTGAGCTACCAACGTTCATGATTGTTGTTC</gDNA_template>
            <first_frame> N  I  I  N  T  Y  H  S  L  L  R  V  Y  Y  E  Y  R  K  K  N  H  N  L  P  P  P  K  T  S  D  Q  A  S  K  F  P  K  I  C  F  S  S  F  L  L  F  L  V  G  L  S  L  S  F  S  C  S  F  Y  F  L  Y  S  K  P  S  F  F  F  P  N  *  H  I  I  K  N  K  R  W  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  A  I  *  L  K  Q  E  *  S  K  T  S  L  K  T  I  E  E  F  R  L  R  L  G  F  T  Q  P  V  T  A  R  R  A  C  D  G  P  S  C  C  S  V  T  E  F  R  D  S  I  C  L  K  S  L  *  R  S  V  T  P  :  V  T  V  R  P  S  I  P  L  R  I  S  E  S  R  F  S  V  P  N  F  R  F  S  K  C  F  E  T  K  P  C  D  G  P  S  W  :  Q  G :   S  S  Y  *  A  T  N  V  H  D  C  C   </first_frame>
            <second_frame>  I  L  S  I  H  I  I  R  Y  *  E  F  T  T  N  I  V  R  K  T  I  T  Y  L  H  R  R  L  V  I  K  Q  A  N  S  Q  R  F  V  S  L  R  F  S  S  F  S  L  D  F  L  S  L  S  L  V  L  S  I  F  F  I  Q  N  P  L  S  F  S  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  H  *  L  Y  N  *  S  R  N  S  Q  K  R  P  L  K  Q  L  R  N  S  D  S  D  W  D  L  R  S  L  *  R  P  V  A  P  A  T  V  R  L  A  A  P  S  Q  S  S  E  T  Q  F  V  *  R  V  C  D  G  P  S  H  L :   *  R  S  V  L  P  F  R  Y  E  F  Q  R  V  D  F  Q  Y  P  I  S  D  F  L  S  V  L  K  R  N  P  A  T  V  R  R  G :   K   : E  V  P  T  E  L  P  T  F  M  I  V  V  </second_frame>
            <third_frame>   Y  Y  Q  Y  I  S  F  A  I  K  S  L  L  R  I  S  *  E  K  P  *  P  T  S  T  E  D  *  *  S  S  K  Q  I  P  K  D  L  F  L  F  V  S  P  L  S  R  W  T  F  S  L  F  L  L  F  F  L  F  S  L  F  K  T  L  F  L  F  P  *  L  A  Y  N  *  E  *  K  M  A  I  I  T  H  *  L  T  *  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  *  P  T  S  Y  I  I  K  A  G  I  V  K  N  V  P  *  N  N  *  G  I  P  T  Q  T  G  I  Y  A  A  C  D  G  P  S  R  L  R  R  S  V  L  L  L  R  H  R  V  Q  R  L  N  L  S  E  E  S  V  T  V  R  H  T   : C  D  G  P  S  F  H  S  V  T  N  F  R  E  S  I  F  S  T  Q  F  Q  I  F  *  V  F  *  N  E  T  L  R  R  S  V  V   : A  R  :  K  F  L  L  S  Y  Q  R  S  *  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58436" stop="58221"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIINTYHSLLRVYYEYRKKNHNLPPPKTSDQASKFPKICFSSFLLFLVGLSLSFSCSFYFLYSKPSFFFPN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58068" stop="57936"/>
                    <exon start="50886" stop="50813"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIPTQTGIYAACDGPSRLRRSVLLLRHRVQRLNLSEESVTVRHTCDGPSFHSVTNFRESIFSTQFQIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="59002" e_stop="58657"/>
            <exon e_start="51639" e_stop="51266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.919"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="59002" e_stop="58657" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58656" i_stop="51640" i_length="7017"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="51639" e_stop="51266" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59002" stop="58657"/>
              <exon start="51639" stop="51266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATGTTCATTTGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTACTAATATGTGTCGGAACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTAGAAACACCCGATCCCCTAAATCTACGTGTTGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCTGATCCCCTAAATCTACGTGTCATTTCGTGACACCCGATCCCATAAATCTACGTGTCGGTTTGTGACACCCGATCCCCTA : ATCTGCGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGATTAATGACACCCGATCCCCTAATCTCCATCTATCAATTCATCAAGCCTTCTTTCTTACCAAGGCATCATCAATCTCATTAGTTTAGTTCATCATGCCTTCTTTTATACCAAGGCCTCATCATTAACAAAGAGATTAGGGTTTTGCAAGATTTGGGATTCAATAACTTCATCAAGCTTATATAATCACAATTATATAATTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTATAATATTATAAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAAAAACCATAACCTACCTCCACCGAAGACTA</gDNA_template>
            <first_frame> L  C  S  F  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  L  I  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  *  K  H  P  I  P  *  I  Y  V  L  V  R  D  T  R  S  P  K  S  T  C  R  F  V  T  P  D  P  L  N  L  R  V  I  S  *  H  P  I  P  *  I  Y  V  S  V  C  D  T  R  S  P   : N  L  R  V  G  S  *  H  P  I  P  *  I  Y  V  S  I  N  D  T  R  S  P  N  L  H  L  S  I  H  Q  A  F  F  L  T  K  A  S  S  I  S  L  V  *  F  I  M  P  S  F  I  P  R  P  H  H  *  Q  R  D  *  G  F  A  R  F  G  I  Q  *  L  H  Q  A  Y  I  I  T  I  I  *  L  H  S  C  K  H  T  I  K  H  I  A  G  F  I  I  L  *  I  H  I  I  R  Y  *  E  F  T  T  N  I  V  R  K  T  I  T  Y  L  H  R  R  L </first_frame>
            <second_frame>  Y  V  H  L  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  Y  *  Y  V  S  E  R  D  T  P  I  P  *  I  Y  V  S  V  R  N  T  R  S  P  K  S  T  C  W  F  V  T  P  D  P  L  N  L  R  V  G  S  *  H  L  I  P  *  I  Y  V  S  F  R  D  T  R  S  H  K  S  T  C  R  F  V  T  P  D  P  L  :  I  C  V  S  V  R  D  T  R  S  P  K  S  T  C  R  L  M  T  P  D  P  L  I  S  I  Y  Q  F  I  K  P  S  F  L  P  R  H  H  Q  S  H  *  F  S  S  S  C  L  L  L  Y  Q  G  L  I  I  N  K  E  I  R  V  L  Q  D  L  G  F  N  N  F  I  K  L  I  *  S  Q  L  Y  N  Y  I  H  A  S  I  Q  L  S  T  *  Q  G  L  *  Y  Y  K  Y  I  S  F  A  I  K  S  L  L  R  I  S  *  E  K  P  *  P  T  S  T  E  D   </second_frame>
            <third_frame>   M  F  I  *  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  T  N  M  C  R  N  V  T  L  R  S  P  K  S  T  C  R  L  E  T  P  D  P  L  N  L  R  V  G  S  *  H  P  I  P  *  I  Y  V  S  V  R  D  T  *  S  P  K  S  T  C  H  F  V  T  P  D  P  I  N  L  R  V  G  L  *  H  P  I  P  * :   S  A  C  R  F  V  T  P  D  P  L  N  L  R  V  D  *  *  H  P  I  P  *  S  P  S  I  N  S  S  S  L  L  S  Y  Q  G  I  I  N  L  I  S  L  V  H  H  A  F  F  Y  T  K  A  S  S  L  T  K  R  L  G  F  C  K  I  W  D  S  I  T  S  S  S  L  Y  N  H  N  Y  I  I  T  F  M  Q  A  Y  N  *  A  H  S  R  V  Y  N  I  I  N  T  Y  H  S  L  L  R  V  Y  Y  E  Y  R  K  K  N  H  N  L  P  P  P  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51569" stop="51369"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSINSSSLLSYQGIINLISLVHHAFFYTKASSLTKRLGFCKIWDSITSSSLYNHNYIITFMQAYN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58725" stop="58657"/>
                    <exon start="51639" stop="51511"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYVSFRDTRSHKSTCRFVTPDPLICVSVRDTRSPKSTCRLMTPDPLISIYQFIKPSFLPRHHQSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="51266" PGL_stop="52087"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51266" e_stop="51686"/>
            <exon e_start="51793" e_stop="52087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.911"/>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="51266" e_stop="51686" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="51687" i_stop="51792" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.915">
            <gDNA_exon_boundary e_start="51793" e_stop="52087" e_length="295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51266" stop="51669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51645" stop="51686"/>
              <exon start="51793" stop="52087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTTTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTTATAATATTATAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCTTGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCATGATGAACTAAACTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGATGGAGATTAGGGGATCGGGTGTCATTAATCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGCAGATTTAGGGGATCGGGTGTCACAAACCGACATGTAGATTTAGGGGATCGG : AGTGTCACGTACCGACATAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCGAATGAACATAATTCCCAAATGAGTATAGTATTGAGGCTTGTGTCCTCGTGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTTATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGACCGATGATATCTAATCAGT</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  L  *  Y  Y  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  L  M  K  L  L  N  P  K  S  C  K  T  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  H  D  E  L  N  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  M  E  I  R  G  S  G  V  I  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  Q  I  *  G  I  G  C  H  K  P  T  C  R  F  R  G  S   : E  C  H  V  P  T  *  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  I  V  L  R  L  V  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  F  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  T  D  D  I  *  S   </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  F  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  Y  N  I  I  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  P  *  S  L  C  *  *  *  G  L  G  I  K  E  G  M  M  N  *  T  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  W  R  L  G  D  R  V  S  L  I  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  :  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  R  M  N  I  I  P  K  *  V  *  Y  *  G  L  C  P  R  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  L  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  *  P  M  I  S  N  Q  </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  F  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  F  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  L  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  L  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  I  D  G  D  *  G  I  G  C  H  *  S  T  R  R  F  R  G  S  G  V  T  N  R  H  A  D  L  G  D  R  V  S  Q  T  D  M  *  I  *  G  I  G :   V  S  R  T  D  I  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  E  *  T  *  F  P  N  E  Y  S  I  E  A  C  V  L  V  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  Y  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  D  R  *  Y  L  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0133O02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51690" e_stop="51721"/>
            <exon e_start="51793" e_stop="51998"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.969"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="51690" e_stop="51721" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="51722" i_stop="51792" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="0.951">
            <gDNA_exon_boundary e_start="51793" e_stop="51998" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51690" stop="51721"/>
              <exon start="51793" stop="51998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACAAACCGACACATAGATTTAGGGGATCGG : AGTGTCACGTACCGACATAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCGAATGAACATAATTCCCAAATGAGTATAGTATTGAGGCTTGTGTCCTCGTGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTT</gDNA_template>
            <first_frame> S  Q  T  D  T  *  I  *  G  I  G :   V  S  R  T  D  I  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  E  *  T  *  F  P  N  E  Y  S  I  E  A  C  V  L  V  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  </first_frame>
            <second_frame>  H  K  P  T  H  R  F  R  G  S   : E  C  H  V  P  T  *  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  I  V  L  R  L  V  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V </second_frame>
            <third_frame>   T  N  R  H  I  D  L  G  D  R  :  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  R  M  N  I  I  P  K  *  V  *  Y  *  G  L  C  P  R  V  *  T  *  R  *  L  L  M  I  *  Y  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0133O02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="53547" PGL_stop="54991"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53547" e_stop="53719"/>
            <exon e_start="54464" e_stop="54991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.240" e_score="0.948"/>
          <exon-only e_score="0.888"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="53547" e_stop="53719" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.240">
            <gDNA_intron_boundary i_start="53720" i_stop="54463" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.888">
            <gDNA_exon_boundary e_start="54464" e_stop="54991" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53547" stop="53719"/>
              <exon start="54464" stop="54991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAAATATGCCACTCAACTTTGTTTCAGTCCACAAGAGTGGATTCGTCATTTTGTGAAGGGGTTGAGGTAAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACGGCAAAATCCTTCCAAG : AAATGGATGATTTGGATGTAATCCTGGGTATGACTTGGCTTTCTTCGCAATTTTTGATTTTGGATTGTAATGCTAACACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTTGTGTGGGAGGGTTACTACACTTCCAATCCGGTGCGTATCATCTCCTTTATTCGTGCTAGGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTCCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAAGCCCAACTACAAGAGTTGTTGAGCAAAGGCTTCATTAGACAAACTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGAGAAGAAGAAGGATGAGAGTTTTCAGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  T  R  V  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  S  Y  G  K  I  L  P  R :   N  G  *  F  G  C  N  P  G  Y  D  L  A  F  F  A  I  F  D  F  G  L  *  C  *  H  G  D  V  S  Q  A  W  D  R  S  V  C  V  G  G  L  L  H  F  Q  S  G  A  Y  H  L  L  Y  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  A  S  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  *  V  K  G  V  K  S  P  T  T  R  V  V  E  Q  R  L  H  *  T  N  C  I  S  L  G  C  S  G  F  V  *  E  E  E  G  *  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  K  Y  A  T  Q  L  C  F  S  P  Q  E  W  I  R  H  F  V  K  G  L  R  *  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  D  D  L  D  V  I  L  G  M  T  W  L  S  S  Q  F  L  I  L  D  C  N  A  N  T  V  T  L  A  K  P  G  T  D  P  F  V  W  E  G  Y  Y  T  S  N  P  V  R  I  I  S  F  I  R  A  R  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  P  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  Q  T  A  S  P  W  G  A  P  V  L  F  E  K  K  K  D  E  S  F  Q  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  N  M  P  L  N  F  V  S  V  H  K  S  G  F  V  I  L  *  R  G  *  G  K  S  C  G  F  Q  P  Y  R  *  Q  L  R  Q  N  P  S  K  :  K  W  M  I  W  M  *  S  W  V  *  L  G  F  L  R  N  F  *  F  W  I  V  M  L  T  R  *  R  *  P  S  L  G  Q  I  R  L  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  L  F  V  L  G  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  C  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  K  P  N  Y  K  S  C  *  A  K  A  S  L  D  K  L  H  L  L  G  V  L  R  F  C  L  R  R  R  R  M  R  V  F  R  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53668" stop="53719"/>
                    <exon start="54464" stop="54990"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELRISALQVAATAKSFQEMDDLDVILGMTWLSSQFLILDCNANTVTLAKPGTDPFVWEGYYTSNPVRIISFIRARKMVSKGCLAFLAHLKDDTTQVPPIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRQTASPWGAPVLFEKKKDESFQMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="58848" PGL_stop="59485"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58848" e_stop="59485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="58848" e_stop="59485" e_length="638"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58848" stop="59332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59287" stop="59485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGTTCCGACACATATTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCAAATGAACATAATTCCCAAATCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCGTGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGACTTCTATTTTGAGTTGACCGATGATATCTAATCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCACCTTCGACTCAACAGTAACTCTAGCCAGTCCTCATTACTCCGTATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATATCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAACTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAAATAATAGTTATTGA</gDNA_template>
            <first_frame> H  V  P  T  H  I  S  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  I  P  N  E  Y  G  I  E  A  *  V  L  V  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  L  L  F  *  V  D  R  *  Y  L  I  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  P  S  T  Q  Q  *  L  *  P  V  L  I  T  P  Y  I  R  V  S  *  C  F  *  L  G  L  D  L  P  L  H  I  L  M  P  *  S  S  G  M  D  *  L  L  C  I  F  S  F  L  E  T  L  R  F  S  N  L  K  *  M  F  L  *  *  *  L  P  D  F  G  E  I  I  V  I   </first_frame>
            <second_frame>  T  F  R  H  I  L  V  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  Q  M  N  I  I  P  K  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  T  D  D  I  *  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  W  I  F  L  F  I  S  *  C  L  E  V  P  A  W  T  S  F  Y  V  F  L  A  S  *  K  L  L  D  L  V  T  *  S  R  C  S  C  D  D  D  F  Q  I  L  G  K  *  *  L  L  </second_frame>
            <third_frame>   R  S  D  T  Y  *  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  K  *  T  *  F  P  N  P  K  *  V  W  Y  *  G  L  S  P  R  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  T  S  I  L  S  *  P  M  I  S  N  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  V  T  F  D  S  T  V  T  L  A  S  P  H  Y  S  V  Y  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  Y  L  D  A  L  K  F  R  H  G  L  A  F  M  Y  F  *  L  L  R  N  S  *  I  *  *  L  E  V  D  V  L  V  M  M  T  S  R  F  W  G  N  N  S  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59162" stop="59398"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMISNQYPCFVLTPTFMFSSCLFVECSKRAVTFDSTVTLASPHYSVYQGELMLLAWTGSSSSYLDALKFRHGLAFMYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="63377" PGL_stop="69941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63377" e_stop="63567"/>
            <exon e_start="65027" e_stop="65035"/>
            <exon e_start="69820" e_stop="69941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.927" e_score="0.927"/>
          <exon-intron don_prob="0.261" acc_prob="0.000" e_score="0.444"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="63377" e_stop="63567" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="63568" i_stop="65026" i_length="1459"/>
          </intron>
          <exon e_serial="2" e_score="0.444">
            <gDNA_exon_boundary e_start="65027" e_stop="65035" e_length="9"/>
          </exon>
          <intron i_serial="2" don_prob="0.261" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65036" i_stop="69819" i_length="4784"/>
          </intron>
          <exon e_serial="3" e_score="0.918">
            <gDNA_exon_boundary e_start="69820" e_stop="69941" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63377" stop="63567"/>
              <exon start="65027" stop="65035"/>
              <exon start="69820" stop="69941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCACCCCCAACCGAACCTCCACAACTTCAACCTGCATAAACATCAACCCAATCTAACAACTCACAGTTTACATAGAACGTAACTCAACAAAAACATATAGACAAATTACAAATCCTCCACAACAACACTTTAACAAATTACATATCCTCGACACCAACACTTTAACAAATTATATATCCTCAATAACAA : CCGTCACAG : ACAAATTACATATCCTCCACAACAACACTTTAACAAATTACATATCCTCCACAATAACACTTTAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</gDNA_template>
            <first_frame> Y  H  P  Q  P  N  L  H  N  F  N  L  H  K  H  Q  P  N  L  T  T  H  S  L  H  R  T  *  L  N  K  N  I  *  T  N  Y  K  S  S  T  T  T  L  *  Q  I  T  Y  P  R  H  Q  H  F  N  K  L  Y  I  L  N  N  N :   R  H  R :   Q  I  T  Y  P  P  Q  Q  H  F  N  K  L  H  I  L  H  N  N  T  L  T  N  Y  I  S  S  I  T  S  S  V  F  N  N  H  K  F  R  K  </first_frame>
            <second_frame>  T  T  P  N  R  T  S  T  T  S  T  C  I  N  I  N  P  I  *  Q  L  T  V  Y  I  E  R  N  S  T  K  T  Y  R  Q  I  T  N  P  P  Q  Q  H  F  N  K  L  H  I  L  D  T  N  T  L  T  N  Y  I  S  S  I  T   : T  V  T   : D  K  L  H  I  L  H  N  N  T  L  T  N  Y  I  S  S  T  I  T  L  *  Q  I  I  Y  P  Q  *  Q  A  Q  Y  S  T  I  T  S  S  A  K </second_frame>
            <third_frame>   P  P  P  T  E  P  P  Q  L  Q  P  A  *  T  S  T  Q  S  N  N  S  Q  F  T  *  N  V  T  Q  Q  K  H  I  D  K  L  Q  I  L  H  N  N  T  L  T  N  Y  I  S  S  T  P  T  L  *  Q  I  I  Y  P  Q  *  Q  :  P  S  Q  :  T  N  Y  I  S  S  T  T  T  L  *  Q  I  T  Y  P  P  Q  *  H  F  N  K  L  Y  I  L  N  N  K  L  S  I  Q  Q  S  Q  V  P  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63435" stop="63567"/>
                    <exon start="65027" stop="65035"/>
                    <exon start="69820" stop="69884"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLTVYIERNSTKTYRQITNPPQQHFNKLHILDTNTLTNYISSITTVTDKLHILHNNTLTNYISSTITL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="70566" PGL_stop="69880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70566" e_stop="69880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="70566" e_stop="69880" e_length="687"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70566" stop="69880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTGATATATGTTTGGGAGTAACGGATTGGTGATGGGTTGACTTGTCCACATTGATTAATTCTAATGATGACATAAAAGGGATAACAAAAGGCGATGTGATTAATTATTTATGTGTGATGTGTTGAGAAAAGTTTGATGGCTTGTTGAATCATTGTTGATGTGATTTCATGTTTGTGTGGTTGTGAACTGTGCAATGTTATGAAAATAGTCATCTCCTCATTATTTGTGTGGACATGTCATTGCATTATTCTGAGACATGGTTGTGAAAGTGTTATGTGCATTGAGAAAGAATGATAACTTAAAGAGGATGTACCATTTCGAGGGACGTATCGCGCGCCGTGATGGATACTATATTTCGAGGGACGTATCGCGCGCCGCGATGGATACTATATTTCGAGGGACGTATCGCACGCCGCGATGGTTACTATTATCGAGGGTCGTGTCGTGCGCCGCGACAGATGCATGGACAGATATGTCCCCCATGGGTCCCGGACTGAGAGACAGCGGGTGTGTATCACTAGGTCAGACATGCATCATTATACTTGACATTGCATTCCATTACATTGCACATACTTATCATTAGTGAACTTGATATTATGTTTTGCTGATCTAGTGATTGCCTTTTTGCGGAACTTGTGATTGTTGAATACTGAGCTTGTTATTGAGGATATATAATTTGTTAAA</gDNA_template>
            <first_frame> L  V  I  Y  V  W  E  *  R  I  G  D  G  L  T  C  P  H  *  L  I  L  M  M  T  *  K  G  *  Q  K  A  M  *  L  I  I  Y  V  *  C  V  E  K  S  L  M  A  C  *  I  I  V  D  V  I  S  C  L  C  G  C  E  L  C  N  V  M  K  I  V  I  S  S  L  F  V  W  T  C  H  C  I  I  L  R  H  G  C  E  S  V  M  C  I  E  K  E  *  *  L  K  E  D  V  P  F  R  G  T  Y  R  A  P  *  W  I  L  Y  F  E  G  R  I  A  R  R  D  G  Y  Y  I  S  R  D  V  S  H  A  A  M  V  T  I  I  E  G  R  V  V  R  R  D  R  C  M  D  R  Y  V  P  H  G  S  R  T  E  R  Q  R  V  C  I  T  R  S  D  M  H  H  Y  T  *  H  C  I  P  L  H  C  T  Y  L  S  L  V  N  L  I  L  C  F  A  D  L  V  I  A  F  L  R  N  L  *  L  L  N  T  E  L  V  I  E  D  I  *  F  V  K </first_frame>
            <second_frame>  L  *  Y  M  F  G  S  N  G  L  V  M  G  *  L  V  H  I  D  *  F  *  *  *  H  K  R  D  N  K  R  R  C  D  *  L  F  M  C  D  V  L  R  K  V  *  W  L  V  E  S  L  L  M  *  F  H  V  C  V  V  V  N  C  A  M  L  *  K  *  S  S  P  H  Y  L  C  G  H  V  I  A  L  F  *  D  M  V  V  K  V  L  C  A  L  R  K  N  D  N  L  K  R  M  Y  H  F  E  G  R  I  A  R  R  D  G  Y  Y  I  S  R  D  V  S  R  A  A  M  D  T  I  F  R  G  T  Y  R  T  P  R  W  L  L  L  S  R  V  V  S  C  A  A  T  D  A  W  T  D  M  S  P  M  G  P  G  L  R  D  S  G  C  V  S  L  G  Q  T  C  I  I  I  L  D  I  A  F  H  Y  I  A  H  T  Y  H  *  *  T  *  Y  Y  V  L  L  I  *  *  L  P  F  C  G  T  C  D  C  *  I  L  S  L  L  L  R  I  Y  N  L  L   </second_frame>
            <third_frame>   C  D  I  C  L  G  V  T  D  W  *  W  V  D  L  S  T  L  I  N  S  N  D  D  I  K  G  I  T  K  G  D  V  I  N  Y  L  C  V  M  C  *  E  K  F  D  G  L  L  N  H  C  *  C  D  F  M  F  V  W  L  *  T  V  Q  C  Y  E  N  S  H  L  L  I  I  C  V  D  M  S  L  H  Y  S  E  T  W  L  *  K  C  Y  V  H  *  E  R  M  I  T  *  R  G  C  T  I  S  R  D  V  S  R  A  V  M  D  T  I  F  R  G  T  Y  R  A  P  R  W  I  L  Y  F  E  G  R  I  A  R  R  D  G  Y  Y  Y  R  G  S  C  R  A  P  R  Q  M  H  G  Q  I  C  P  P  W  V  P  D  *  E  T  A  G  V  Y  H  *  V  R  H  A  S  L  Y  L  T  L  H  S  I  T  L  H  I  L  I  I  S  E  L  D  I  M  F  C  *  S  S  D  C  L  F  A  E  L  V  I  V  E  Y  *  A  C  Y  *  G  Y  I  I  C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70310" stop="69981"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMVVKVLCALRKNDNLKRMYHFEGRIARRDGYYISRDVSRAAMDTIFRGTYRTPRWLLLSRVVSCAATDAWTDMSPMGPGLRDSGCVSLGQTCIIILDIAFHYIAHTYH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="79861" PGL_stop="80097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79861" e_stop="80097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="79861" e_stop="80097" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79861" stop="80097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGAACTGAATTTTCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTTATATATACTGTTTTCTATTTTGAGTTGGCCGATAATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTAATTTGTG</gDNA_template>
            <first_frame> *  *  T  E  F  S  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  Y  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  L  F  S  S  C  *  F  V </first_frame>
            <second_frame>  N  E  L  N  F  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  F  I  Y  T  V  F  Y  F  E  L  A  D  N  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  C  F  L  L  V  N  L   </second_frame>
            <third_frame>   M  N  *  I  F  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  L  Y  I  L  F  S  I  L  S  W  P  I  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  I  V  F  F  L  L  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0133O02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="146752" PGL_stop="147082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146752" e_stop="147082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="146752" e_stop="147082" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146752" stop="147082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGTTTGGTTAACGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAACCAATTCATACCCAGAATTACATCGAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCAAAAACGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACTGGAGTAGAAACACAAATAGGCATGCCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAAGAAGATACATATGAAAATGTGGATCAAGGATCAAATAATACGGAAGCCATGCAATCGCAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  V  W  L  T  S  Q  F  *  H  Y  N  L  R  L  Q  S  L  E  K  T  N  S  Y  P  E  L  H  R  N  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  K  T  L  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  L  E  *  K  H  K  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  Q  M  K  K  I  H  M  K  M  W  I  K  D  Q  I  I  R  K  P  C  N  R  K  P  </first_frame>
            <second_frame>  I  C  P  R  F  G  *  R  H  S  F  S  I  T  I  *  D  C  K  V  W  R  K  P  I  H  T  Q  N  Y  I  E  I  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  Q  K  R  Y  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  W  S  R  N  T  N  R  H  A  K  Q  F  T  M  *  I  K  T  S  S  K  *  R  R  Y  I  *  K  C  G  S  R  I  K  *  Y  G  S  H  A  I  A  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  V  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  N  Q  F  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  K  N  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  Q  I  G  M  P  S  N  S  Q  C  K  L  R  P  V  A  N  E  E  D  T  Y  E  N  V  D  Q  G  S  N  N  T  E  A  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146883" stop="147080"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPKNVTRQDLYTFSTITDSPTGVETQIGMPSNSQCKLRPVANEEDTYENVDQGSNNTEAMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 289 chains have been computed
$ 
$ memory statistics:
$ 766784 bytes spliced alignments in total
$ 42 spliced alignments have been stored
$ 18256 bytes was the average size of a spliced alignment
$ 29632 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1411 bytes was the average size of a predicted gene location
$ 9 megabytes was the average size of the backtrace matrix
$ 405 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:21:05
-->
