<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:21:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578865" ref_strand="+" ref_description="SGN-U578865 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=8e-164) Polyprotein,; (*SWP) sp|Q99315|YG31B_YEAST (e_value=2e-17) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>aagaacagcgacaaggggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcgcctagcccatctgatactagggcagtgactcctccaccgactgaggaagtaataagagaaggggaggatggggaaactgaacaagtgcagaatgagggattgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttatctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatcggaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttgggcctcattctctagcttgtttatggagaagtatatcccccgaactttgagggataggaaaagggatgagttcttgagcctagagcaaggtaggatgtcggtcaatgcatatgaggctaagtttcgtgcattatcccggtatgccacccaactgtgtttcagtccacaagagcgaattcgccggtttgtgaaggggttgaggtcagaattgcagatttcggccttacaaatagcggcaacgacaaaatccttccaagaggtggtagactttgtgatagaagtggaaggagtgaagccagacgacttcatcccgacatcgacatcaaaaaggtttcgaaagggaggtgagtttaatggtgcttacactagaggacagggttagggaagttactcagtccgaccaattcagtcttcactacagactgtagttgggggtccacctccgaccggtcaacacttctctgagagacctatgcatgaacccagagagtgctatggatgtggggagattggacatattaagagatattgtccaaaacagagttacagacctccaaaggttagaggtagaggtggtcatggcagaggccgttattctggaggacgtggcggtcgaggaaatggtggtcaccaaaacggccgaggtgatgggaaaactggagccactacatcacaacaaggtaggggcaacagacagaagaacgatagggcccattgttacgctttccctgggcggtctgaagcggaggaatctgatgctgtcatcacaggtaatcttttggtttgtgattgcatggcttctgtattgtttgatcctggatccacgttttcttatgtatcttcctcatttgctaacggtctaaatttacattgtgaattacttgatatgcctattcgtgtttctactccggtgggtgagtctgtggtagttgaaaaggtatataggtcttgtttggtgaactttgtggggagcaacacttatgtagatttggttatcttagaaatggttgattttgatgtaattctgggtatgacttggctttctccgcaatttgcgatcttggattgtaatgctaaaacggtgacattagccaagcctgggacagatccgttagtgtgggagggtgactacacttccaatccggtgcgcatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggatgacactacccaagtaccttcgattgagtcggtttctatagtctgtgagtttttggatgtgttccctgcagatcttcctggtatgccaccagatagggatattgacttctgtatcgatcttgaaccgggcacacgccccatttctatacccccttatagaatggctcccgtagagttaagagagttaaaggcccaacttcaagagttgttgagcaaaggtttcattagaccaagtgcatctccttggggtgctccgattttgtttgtgaagaagaaggatgggagttttagaatgtgcatagactacagacaactgaacaaggtaactattaagaacaagtatcctcttcctcgcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="17875" stop="20665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18175" g_stop="20366" g_length="2192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2192" r_length="2192" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-U578865" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>2192</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18175" e_stop="20366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCAACGGCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAACACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGATTGAGGAGGTAATAAGAGAAGGGTAGGATGGGGAAAATGAACAAGTGCAGAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCATCTCAGGCTCCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCAGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGACACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACCTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAAGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGCATTGCGGATTTCGGCCTTACAGATAGCCGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGGGGAAGGAGTGAAGCCAGACGACTTCATTACGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTGGAGGACACGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTATTCACTACAGACTGTAGTTGGAAGACCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTACGGATGTGGGGAGACTGGACATATTAGGAGAAATTGTCCAAAACAGAGTTACAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTTTTCTGGAGGGCGTGGTGGTCGAGGAAATCGTGGTCTCCAAAACGGCCAAGGTGATAGGCAAGCTGGAGCCACTACATCATAACATGGTAGGGGCAACGGACAGACGAACGATGGGGCCCATTGTTACGCTTTCCCTGTGCGGTCTGAAGCAGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCTTGGATCCACCTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTACATTTACATTGTGAATTTCTTGATATGCCTACTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTGATTCTGGGAATGACTTGGCTTTCTCCGCAATTTGCAATATTGGATTGTAATTCTAAAATGGTGACGTTAGCCAAGCCTGGGACAAACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCTGGTGCGTATCATCTTCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATTACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTCTGTATTGAATTTGAACCGGGTACTTGTCCCATTTCGATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGCCCAAGTGCATCTCCGTAGGGTGCTCGGGTTTTGTTTTTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACATACAACTAAAAAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATG</genome_strand>
        <mrna_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAAATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCATCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTAGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAAGGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGCGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACAGACAGAAGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGAATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAACGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGCATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCTATAGTCTGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGTAGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGTTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTAGAATGTGCATAGACTACAGACAACTGAACAAGGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581303" ref_strand="+" ref_description="SGN-U581303 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-69) Polyprotein,; ">
      <seq>cacgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtctgggacaatttctcctaatatgtccaatctccccacatccataacattctctggagtcaatcataggcccctcggagaagtgttgaccggtctgaggtggtcccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctccctttcgaagcctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaagtccgggggatatacttctccataaacaaactagagaatgaggcccaagtcataggtggtgcctctattggttgacactcgatatgtgaccgccaccacattttggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcctgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcactgccctagtatcagatgggctaggtgctcgtcctcttcctctagaggacgtcctcccacgacctctaccacggccccttgccgctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="19982" stop="17876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19682" g_stop="18175" g_length="1508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1508" r_length="1508" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-U581303" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>1508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19682" e_stop="18175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAGTAGGCATATCAAGAAATTCACAATGTAAATGTAGACCATTAGCAAATGAGGAAGATACATAAGAAAAGGTGGATCCAAGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCTGCTTCAGACCGCACAGGGAAAGCGTAACAATGGGCCCCATCGTTCGTCTGTCCGTTGCCCCTACCATGTTATGATGTAGTGGCTCCAGCTTGCCTATCACCTTGGCCGTTTTGGAGACCACGATTTCCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCCCCACATCCGTAACACTCTCTGGAGTCAAGCATAGGTCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCTTCCAACTACAGTCTGTAGTGAATACTGAATTGGTCGGACTGAGTAACTTCCCGAACCGTGTCCTCCAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAATGAAGTCGTCTGGCTTCACTCCTTCCCCTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCGGCTATCTGTAAGGCCGAAATCCGCAATGCTGACCTCAACCCCTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCTTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAGGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGTCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCTGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGGAGCCTGAGATGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTTGTTCATTTTCCCCATCCTACCCTTCTCTTATTACCTCCTCAATCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGTTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGCTCTT</genome_strand>
        <mrna_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577296" ref_strand="+" ref_description="SGN-U577296 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-54) Polyprotein,; ">
      <seq>aagaacaacggtaagaggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcagtgactcctccaccgactgaggagataataagagaaggggaggatggggaaactgaacaagtgcaaaacgaggaaatgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttgtctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccacatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcagaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtcaaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttggacctcattctctagcttttttatggagaagtatatcccccggactttgagggataggaaaagggatgagttcctgagcctagagcaaggtaggatgtcggttaatgcttatgaagctaagttccgtgcactatccagatatgccacccaactatgtttcagtccacaagagcggattcgccgttttgtgaaggggttgaggtcagagttgtggatttcagccttatagatagcggctactgcaaaatccttccaagaggtggtatatttcgtggtagaggtggaaggagtgaagccagatgacttcaccacgacatcgacatcaaagaggtttcgtaagggaggtgagtttaagggttcttactctagaggacaaggttccggaggttactcagttcgaccatttcaatcttcactacagaccgtagttgggggtccacctcagaccggtcaacacttctccgagagacctatgcttgactccagagagtgttatgggtgtggggagactgggcatattaagagaaattgtccaaaacagagttatagacccccaatggctagaggtagaggtggtcatggtagaggccgtcattctggaggccgtggtggtcgacccacgggtggtcaccaagacggccgaggtgatgggcaaactggagccactacatcacaacatggtaggggcaacagacagacgaacgatatggcccattgttacgctttccctgggcggtttgaagcggaggcatctgatgctgtcatcacaggtaatcttctggtttgtgattgcacggcttctgtattttttgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="17875" stop="19900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18175" g_stop="19600" g_length="1426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1426" r_length="1426" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-U577296" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>1426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18175" e_stop="19600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCAACGGCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAACACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGATTGAGGAGGTAATAAGAGAAGGGTAGGATGGGGAAAATGAACAAGTGCAGAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCATCTCAGGCTCCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCAGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGACACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACCTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAAGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGCATTGCGGATTTCGGCCTTACAGATAGCCGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGGGGAAGGAGTGAAGCCAGACGACTTCATTACGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTGGAGGACACGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTATTCACTACAGACTGTAGTTGGAAGACCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTACGGATGTGGGGAGACTGGACATATTAGGAGAAATTGTCCAAAACAGAGTTACAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTTTTCTGGAGGGCGTGGTGGTCGAGGAAATCGTGGTCTCCAAAACGGCCAAGGTGATAGGCAAGCTGGAGCCACTACATCATAACATGGTAGGGGCAACGGACAGACGAACGATGGGGCCCATTGTTACGCTTTCCCTGTGCGGTCTGAAGCAGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCTT</genome_strand>
        <mrna_strand>AAGAACAACGGTAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGATAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAACGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCACATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCAGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGACCTCATTCTCTAGCTTTTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAAGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTATAGATAGCGGCTACTGCAAAATCCTTCCAAGAGGTGGTATATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAGAGGTTTCGTAAGGGAGGTGAGTTTAAGGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCATTTCAATCTTCACTACAGACCGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAAGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGCCGTGGTGGTCGACCCACGGGTGGTCACCAAGACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTTTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCACGGCTTCTGTATTTTTTGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599718" ref_strand="+" ref_description="SGN-U599718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205427|gb|ABI34389.1| (e_value=5e-23) Polyprotein,; ">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="22665" stop="21883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22365" g_stop="22189" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-U599718" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22365" e_stop="22189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAAAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTAAGGCTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599792" ref_strand="+" ref_description="SGN-U599792 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tattgtaanccctactatatgcttaattgtatgtttgcntgantatgattatgtgattgtgataagataaacatgatgaaaatattgaatcccaaatcttgaaaggaaactttaatatacnttattaatgatgatgccttggtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="23405" stop="24149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23705" g_stop="23849" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-U599792" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>145</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23705" e_stop="23849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAGTATTGAATCCCAAATCTTGAAA-GAAACTTTAATATACATTATTAATGATGATGTCTTGGTATA</genome_strand>
        <mrna_strand>TATTGTAANCCCTACTATATGCTTAATTGTATGTTTGCNTGANTATGATTATGTGATTGTGATAAGATAAACATGATGAAAATATTGAATCCCAAATCTTGAAAGGAAACTTTAATATACNTTATTAATGATGATGCCTTGGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593741" ref_strand="+" ref_description="SGN-U593741 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cagccctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="28008" stop="80305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28307" g_stop="28396" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28397" i_stop="28472" i_length="76">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28473" g_stop="28904" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="519" r_length="429" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-U593741" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28307" e_stop="28396"/>
          <exon e_start="28473" e_stop="28904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATTAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACAAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGAATATATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACATTCCGACACTAGGATAGAATATGGATCGGGTGCCACGTTCTGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTATCACGTACCGACACGATGGGAATAAAGATAATGAATCTTGAAAGATATTAATATATTCAATCTAATGAACCGAATTCCCAAATGAGTATGATGACGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAAGGTTATGCTAACTGTGAATGTTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATAGT</genome_strand>
        <mrna_strand>CAGCCCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCAC............................................................................GTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATAT--GGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="29457" stop="32607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29756" g_stop="30622" g_length="867"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="867" r_length="867" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30623" i_stop="31737" i_length="1115">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31738" g_stop="32307" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="868" r_stop="1436" r_length="569" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29756" e_stop="30622"/>
          <exon e_start="31738" e_stop="32307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGAGGACGTTCTCTAGAGGAAGAGGACGAGCACCTATCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATTAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTTTGTCTTATCTTAGCGGGTTATCTAATCAGGGTTAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCAAGGAGGCCTCATTGGAAATAGGCATGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGACTACAATTTTCTGGTTGATTGTCATGAGCTACTACACAAGATGGGTATAGTAGAAGGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGATCACATGTTGAGTGTCAACCGACAGAAGCAACACCTATGACTTGAGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTACGTTTCGTGCACTATCCAGATACGCCACGCAGCTTTGCTTCAGTCCACAAGAGAGAATTCACTGATTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTACAGGTAGCGGCTACGACAAAATCCTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTGGAAGGAGTAAAGTCAGATGACTTCACCATGGCATTGACATCAATAAGGTTTCTAAAGGAAGATGATTTTAGTGGTTCTTACTCAAGAGGACAGGGTTCCGGAGGTTACTCAGTCGGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCAGTCAACACTTCTCTGAGAGACCTATGCATGATCCCAGAGAGTGCTATGGATGTTGGGAGATAGGACATATTAAGCGATATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACCTGGTGGTCGAGGAAATGGTGGACACCAGAACGGCCGAGGTGATGGGCAACCTGGAGCAAATACATCACAACATTGTAGGGGCAACGGGCAGACAAACGAAAAGGCCCATTATTATGATTTCCTTGGGAGATCGGTGGCGGAGACATCTGATGCTGTCATCACAGGTAATCTTTCGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTGAATTTACATTGTGAATTACTTGATATGCCTATTGGTGTTTCTAGTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGAGGAACAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGACTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACGGTGATGTTAGCCAAGCCTGGGATCGATCCGTTAGTTTGGGAGGGTGACTACAATTCCCATCCGCTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTTCAATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTATAGATCTTCCTGGTATGCCACCAGATAGGTATATTGACTTCTTTATTGACCTTGAACCGGTTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGTCAAACTTCAAGAGTTGTTGAACAAGGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGCTTTCGGATGTGCATAGACTACCGGTAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTAGAAGGTGCTTCTGTCTTCTCTAAGATTGACTTCAGATCCGGCTATCATCAATTGAAAATACGGGCAACGGACGTGCCAAAGACGGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGTCCCTGCTACGTTCATGAGTTTGATGAACGAGATTTTTAACCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTCTGGCTAGATGCAGTGTCCTTCATGGGGCACGTGGTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590648" ref_strand="+" ref_description="SGN-U590648 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-17) Polyprotein,; ">
      <seq>gcacctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="29490" stop="30645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29790" g_stop="30345" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-U590648" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29790" e_stop="30345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCTATCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATTAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTTTGTCTTATCTTAGCGGGTTATCTAATCAGGGTTAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCAAGGAGGCCTCATTGGAAATAGGCATGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGACTACAATTTTCTGGTTGATTGTCATGAGCTACTACACAAGATGGGTATAGTAGAAGGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGATCACATGTTGAGTGTCAACCGACAGAAGCAACACCTATGACTTGAGCCTCATTCT</genome_strand>
        <mrna_strand>GCACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="31744" stop="30820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31445" g_stop="31120" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31445" e_stop="31120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCGATCCCAGGCTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGTTCCTCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGACTAGAAACACCAATAGGCATATCAAGTAATTCACAATGTAAATTCAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="32739" stop="31325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32435" g_stop="31624" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32435" e_stop="31624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACAAATCGGCGGTATTAGCTAGCTAACACAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTCTCTCAATCTTAGAAGGAT-CACCATCACTCAATCCTTAGAAACCACGTGCCCCATGAAGGACACTGCATCTAGCCAGAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGGTTAAAAATCTCGTTCATCAAACTCATGAACGTAGCAGGGACATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCCGTCTTTGGCACGTCCGTTGCCCGTATTTTCAATTGATGATAGCCGGATCTGAAGTCAATCTTAGAGAAGACAGAAGCACCTTCTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTACCGGTAGTCTATGCACATCCGAAAGCTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCCTTGTTCAACAACTCTTGAAGTTTGACCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTAACCGGTTCAAGGTCAATAAAGAAGTCAATATACCTATCTGGTGGCATACCAGGAAGATCTA</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="32853" stop="33944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33153" g_stop="33643" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33153" e_stop="33643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATAATGGAGAGTGGAACCCCATGCAATCGCACCACCTTCGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTTACCTTGACCGGAATGAAATGAGTAGATTTATTTAATCTATCAACAATTACCCAAATGAAGTCATACTTACCCATTGTCATGGGAAGAGCAACCACGAAGTCCATCGCAATCCTTTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTCTGGTGTTCATACTTTATTTGTTGACAGTTTGGACATTTGGCAATAAAATCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGG</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="34114" stop="35530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34418" g_stop="35230" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34418" e_stop="35230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGAAAAATTGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTTTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCCTTAGACACCACGTGCCCCAAGAATGACATTGAATCTAGCCAAAACTCACCCTTGGAGAATTTGGCATAAAGCTTTTTCTCTCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCTTACCTGGTCCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTGAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAGTGCGGGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCTTTCGTCTTCACAAACAGAACAGGAGCACCCCAAGAAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGCAACTCTTGCAGTTATGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATTGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTG</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="37397" stop="34247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37098" g_stop="36224" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36223" i_stop="35109" i_length="1115">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35108" g_stop="34547" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="876" r_stop="1436" r_length="561" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37098" e_stop="36224"/>
          <exon e_start="35108" e_stop="34547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGGGAGGACGTCTTCTAGAGGAAGAGGACGAATGCCTGGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATTGGGAAAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCATAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGAAGGTACAACATGAGGCTATTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGAAAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTAAAACCTCCAGTCTTCAAGGTTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGTACACCGAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATAAGTTGCGCATCATTCTCTACCTTGTTTATGGAGAAGTATATCCCCTGGACTTTGAGTGATGGGAAAAGAGATGAATTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTTCATATGAGGCTAAGTTTCGTGCACTTTCCAGATATGCCACTCAGCTTTGTTTCAGTCCACAAGAGCGGATTCGCCATTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCCTACAGGTAGCGGCTACAGTGAAATCCTTTCAGGAAGTGGTAGACTTCGTGATAGAGGTGGAGGGAGTGAAGACAGATGACTTCACCATGGCATCGACATCAAAAAGGTTTTGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCAAGAGGTTACTTAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGAATCAAGAGAGTGTTATGGATGTGGGGAGACTGGACACATTAAGAGGTATTGTGCAAAGCAGAGTTACAGACCTCCAATAGTTAGAGGTAGGGGTGGTCATGGAAGAGGCCGCTATTCTGGAAAACATGGTGGCCGAGGTAATGGTGGTCACCAAAATGGCCAGGGTAACAGGAAAACTGGGACTACTGCGGCTCATCATAGTAGGGGCAACGGGCAGATAGGTGATAGGGCCCATTGCTATGCTTTCCCTGGGCGGTCTGAAGCGAAGACATCGGATGCTGTTGTCACAGGTAATCTTTTGATTTGTGATTGCATGGCTTCTATATTATTTGATCCTTGCTCCACATTTTCATATGTATCTTCCTCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATACCTATTCATGTTTCTACTCCGGTGGGTGATTCTGTGATTGCCGAAAAAGTATATAGGTCTTGTTTGGTGACTTTTGTGGGGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGTTATGACTTGGATTTCTTCGAATTTTGCGATTTTGGACTGTAATGCTAAAACAGTGACGTTAGCCAAGCCTGGGAAAAATCCGTTAGTGTGGGAGGGCAACTACACTTCCAATCCTGTTCGTATAGTCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAGGGTTGTCTAGCTTTCTTGGCACATCTCAGGGATGACACTACCCAAGTACCTCCAATTGAGTCGGTTTCGATAGTCCGCGAATTTTTAGATGTATTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATTGATCTTGAACCGGGTACTCGCCCAATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCATAACTGCAAGAGTTGCTAAGCAAAGGCTTTATTAGACCAAGTGCATCTTCTTGGGGTGCTCCTGTTCTGTTTGTGAAGACGAAAGATGGGAGTTTTCGGATGTGCATAGACTACAGACAGTTGAACAAGGTAACTATTAAGAACAAATATCCCATTCCCCGCACTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTTTCTAAGATTGACTTGAGATCCGGTTATCATCAATTCAAAATACGGGCAACAGATGTGCCAAAGACTGCTTTTCGGACCAGGTAAGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCTTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCAAAGAGCAAGAAAGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGAGAGAAAAAGCTTTATGCCAAATTCTCCAAGGGTGAGTTTTGGCTAGATTCAATGTCATTCTTGGGGCACGTGGTGTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="35110" stop="36034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35409" g_stop="35734" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35409" e_stop="35734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTTTTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAGTCCAAAATCGCAAAATTCGAAGAAATCCAAGTCATAACCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAAACAAGACCTATATACTTTTTCGGCAATCACAGAATCACCCACCGGAGTAGAAACATGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATATGAAAATGTGGAGCAAGGATCAAATAATATAGAAGCCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590648" ref_strand="+" ref_description="SGN-U590648 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-17) Polyprotein,; ">
      <seq>gcacctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="37361" stop="36209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37064" g_stop="36509" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-U590648" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37064" e_stop="36509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCTGGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATTGGGAAAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCATAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGAAGGTACAACATGAGGCTATTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGAAAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTAAAACCTCCAGTCTTCAAGGTTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGTACACCGAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATAAGTTGCGCATCATTCT</genome_strand>
        <mrna_strand>GCACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593492" ref_strand="-" ref_description="SGN-U593492 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tttagcacatagaagggtttacaatattatcaatacatattattcgctattaagagcttactacgaatatcgtaagagaaaccataacctacctccaccgaagattcgtgatcaagcaagtgatttcccaagctttgtgttttttcctctcgttcgatcctctttctcgttcgactttctctctctttctcttgttctttctattttctttattcaaaccctctttcttttaccctaattagtatataattaagaataaaatatggcaataataacccactaattaacttaaggttacctcttttaacccccaagtaattagacttattaacattaacccactaactttataattaaagcaggaatagtcaaaaacgtcccttaaaacaattgaggaattccgactcagactgggatttacgcagcctgtgacagcccgttgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactggattttcactgaagactctgtgatggtccatcacgcctgtgacggtccgtcttgccattccgttacgaagttcagagagtcgattttcagtacccaatttcagatttcctaagtgttttgaaatgagaccctgcgacggtccgtcgtgcccatgatggtccgtcgtggggtccgtcatttctgccagtttttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="58758" stop="15772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58458" g_stop="57936" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57935" i_stop="50887" i_length="7049">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50886" g_stop="50776" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="638" r_length="111" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50775" i_stop="49660" i_length="1116">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.246" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49659" g_stop="49655" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="643" r_length="5" r_score="0.600"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49654" i_stop="49197" i_length="458">
            <donor d_prob="0.117" d_score="0.00"/>
            <acceptor a_prob="0.089" a_score="0.51"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49196" g_stop="49156" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="684" r_length="41" r_score="0.512"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-U593492" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U593492" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58458" e_stop="57936"/>
          <exon e_start="50886" e_stop="50776"/>
          <exon e_start="49659" e_stop="49655"/>
          <exon e_start="49196" e_stop="49156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAAAAACCATAACCTACCTCCACCGAAGACTAGTGATCAAGCAAGCAAATTCCCAAAGATT-TG-TTTCT-CT-TCGTT-TCTCCTCTTTCTCGTTGGACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAAACCCTCTTTCTTTTTCCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAGCTATATAATTAAAGCAGGAATAGTCAAAAACGTCCCTTAAAACAATTGAGGAATTCCGACTCAGACTGGGATTTACGCAGCCTGTGACGGCCCGTCGCGCCTGCGACGGTCCGTCTTGCTGCTCCGTCACAGAGTTCAGAGACT-CAATTTGTCTGAAGAGTCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCACACCTGTGACGGTCCATCCTGCCATTCCGTTACGAAGTTTTAGAGACTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAATGAGACCCTGCGACGGTCCATCGTGCCCATGACGGTCCGTCGTGGGGTCCGACGCCGCAGCTTGTTTTTGCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCATTACAATAGATACCAATTTACCCATCGTTCGTCCCCGAACGATCACAAGAAGGAAAACAAGGGCGAAAAGGAGTACCTGAATCTTTAAACAGATGTGGGTATCTTTCTTGCATATCTGCCTCCTTCTCCCATCTGGCTTCTTCAACCGGTCGATTCTTCCATTGCACCTTGATGCATGCAATCTCCCTTGACCTCAACTTGCGAACTTCTCTATCTAAAATAGCAACAGGCTCCTCCTCATAAGACAAATTCTCATCAAGCAAAACTGAATCCCAACGGATAATGTAGTTTCCATCCCCATGGTATCTTTTCATCATCGACACATGGAATACCGGATGTACTCCGGACAGCCCTGGAGGCAAGGATAACTCATAAGCCACCTCCCCTACTCGCTCAAGTACTTCAAAGGGACCAATGTACCTTGGTCTTAGCTTGCCTTTTTTACCAAACCGCATCACCCCTTTCATTGGCGAAACTTTCAACAAGATCACCCTCCATGAACTCTAAGTCTCTAACCTTTCGATCTGCATATTCTTTTTGCCTACTTTGCGCCGCTAGAAGCTTTTCTTGAATAGATTTCACTTTCTCTATCGAATCCCTCAAAAGATCAATACCCCAAGGTCTAACCTCGAATGCATCAAACCAACCAATGGGAGACCTACATTTTCTCCCATATAGTGCCTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTGTTGTAGGAGAATTCTGCTAAGGGTAAGAAGCCATCCCACTGACCACCAAATTCTATCACATATGCACGAAGCATATCCTCCAACACTTGAATCATTCGCTAAGACTAACCATCGGTCTGAGGATGGAACACAGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACGTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGATAGTAGAACCCCATGCAATCGAACGATTTCTGAGATATAGATCTTGGCTAACTTTTCGGCATTATAAGTCACCTTAACCGGAATAAAATGAGCAGACATAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATCGTCTTTGGAAGACCAACCACGAAGTCCATTGTGATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGTGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATCACGCTTCATTCTACTCCACCAAAGTGTTGCTTTAGGTCACGATACATCTTTGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTGATTCTCAAAACACCTTCCTCATTGATTTGTTCTTCCTTAGCCTCTCCTCGCAATACTTTATCTCGGATCCGGATAAATTTTTCATCATTAAACCGCTTTCCCTTAATCTTGTCAAGGAAGGAAGTTCTTGCCTTCACACAAGCTAAAAATCCTCCCTTCTCATTTACTTCTAATCTCATTAGGTCGTTAGCCAGAATCTGAACTTCCCTAGCCAATGGGCGTCTAGAAGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCGCCTTTCTACTTAAAGCATCCGCTAAAACATTCGCCTTCCCCGGATGATACAAAATAGTGATATCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCCCAAGTTCAAATCTTTCTGAGTAAAGACATACTGTAGGCTACGATGATCCGTATAGACCTCACACTTAACCCCATATAAATAGTGTCTCCATCACATTAATGCAAACACTACCGCGGCCAATTCCAAATCATGAGTTGGATAGTTACGTTCATGCACTTTTAATTGTCTTGAAGCATAAGCAATCACATTCTTCTCTTGCATTAGTACTGCACCCAATCCCGAATAGGATGCATCACAATACACAATGAAATTCTTAACTTCCACTGGCAAGGTGAGAATTGGTGCAGTAGTCAACAGAGTCTTGAGCTTCTGAAAGCTTTCCTCACACTCATCCGACCATACAAATGGAACATTTTGCTTAGTCAAGTTCATCAGTTGGGAGGCAATAGAAGAGAATCCCTTGACAAATCGGTAGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCTTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTAGCCAAAACTTACACTTAGAGAACTTGGCCTAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCGTTAATGAATACAATCACAAAGAGATCCAAATATGGCTTAAAAATTCCATTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACTTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCTTTTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGGCACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTGATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCTGAAAACTCTCATCCTTCTTCTTCTCAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTTGTCTAATGAAGCCTTTGCTCAACAACTCTTGTAGTTGGGCTTTTAACTCCCTTAACTCAGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGGAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCCTAGCACGAATAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTAACCCTCCCACACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTGTTAGCATTACAATCCAAAATCAAAAATTGCGAAGAAAGCCAAGTCATACCCAGGATTACATCCAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCCACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACATTGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCAATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCGGACCGCCTAGGGAAAGCGTAACAATGGGCCCTATTGTTTGTCTGTCCATTGACCCTACCATGTTGTGATGTAGTGGCTCTCGTTTTCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTAGGGGTCTATAACTCTGTTTTGGACATTTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTTAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCCTGTCCTCTAGAGTAAGAACCATTAAGGTCACCTCCTTTTCGAAACCTCTTTGATGTCGATGCCACGGTAAATTCATCTGGCTTCACTCCTTCCACCTCTACCACAAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCTGCTACCTGTAAGGCTGAAATCCGCAACTCTTACCTCAACCCCTTCACAAAATGACGAATCCACTCTTGTGGACTGAAACAAAGTTGAGTGGCATATTTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCTTCTTCCTATCCCTCAAAGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAAGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTTATAAGTCACAAACTCAACACCAAACCGTTCTACTATACACTTCTTGAGTAATAGCTCATGACAGTCAACCAGAAAATCGTAGGCATCCTCAGATCCAGCACCCTTGAAGACTGGAGGTTTAAATTTCAAGAACTCACTGAAAAGTTCATGCTGATCATTTGTAATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCATCCATACGAGAAGCCATAGTGGCTCCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAAAACTTGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCGCTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACCACTTCCTCAGTCGGTGGAGGAGTCACCGCTTTAGTATCAGACGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTCCTCTAGCTACAGCCCTAGTGGCTGGTTCAGACGCACCCTGTCCCGCCGGTGCAGGTGTTGGTGCGGTTGTTGCTCTAGTTCTAACCATCTGTGAAATAGAGTGAAGATGGTCAGATACCAATTAGTATCACCTAGATACCAATTTAATCCAAGTAATAGCACGAAAGAAAGAAAGAAAGAAAGAAAGAATGGAATTTTCCTAAAGTCTTATAGCCTCTCAAAGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAAAGAACCTAATGCTCTGATACCAAGTTTGTCACGATCCAAAACCGAGCCGCGACTTGCACATACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATATCATCATAAAATAATGCGGAAGACTTAAAATCATTAATAAAAACCAATTCAATAACTTTTATTTCCCCAAAATTTGGAAGTCATCATCACAAGAACATGTACTTCAAGTTACTAAATCTAAGAGTTTCTAAGAAGCTAAAAATACATAAAAGCTAGTCCATGCCGAAACTTCAAGGCATCAAGACATGAAGAGGAAGATACAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAATGAGGATTGGCTAGAGTTACTTCTAAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACCAAACACGAGTACTGATTAGATATCATCGGTCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATAAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACACGAGGACACAAGCCTCAATACTATACTCATTTGGGAATTATGTTCATTCGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTATGTCGGTACGTGACACTCCGATACCCTACTACTATCTGTCAGAACGTGACACTCCGATCCCCTAAATCTACATGTCGGTTCGTCACACCCGATCCCCTAAATCTATGTGTCGGTTTGTGACACCCGATCCCCTAAATCTACATGTCGGTTTGTGACACCCGATCCCCTAAATCTGCGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGATTAATGACACCCGATCCCCTAATCTCCATCTATCAATTCATCAAGCCTTCTTTCTTACCAAGGCATCATCAATCTCATTAGTTTAGTTCATCATGCCTTCTTTTATACCAAGGCCTCATCATTAACAAAGAGATTAGGGTTTTGCAAGATTTGGGATTCAATAACTTCATCAAGCTTATATAATCACAATTATATAATTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTATAATATTATAAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAAAAACCATAACCTACCTCCACCGAAGACTAGTTATCAACTTTGTTTCTCTTGGTTTCTCCTCTTTCTCGTTCGACTTTCTCTCTCTTTCTCTTTTTCTTTCTATTTTCTTTATTCAAAACCCTCTTTCTTTTACCCTAATTATCATATAATTATGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAGTTATATAATTAAAGCAGGAATAGTCAAAAATGTCCCTTAAATCAATTGAGGAATTCCGACTCAGACTGGGATTTACGCAGCCTGTGACGGCCCGTCGCGCCTGCGACGGTCCGTCCTGCTGCTCCGTCACAAAGTTCAGAGACTCAATTTCTCTGAAGAGTCTGTGACGGTCCGTCCTTCCATTCCGTTACGAATTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAAACCCTGCGACGGTCCGTCGTGGGTTCCGTCGCCTCAGCTTGTTTTTCCAAAAATAAAATCTACTGCTCAAAACGACTAAACAGGTCGTTACAATCTTCCACCCTGCTGCTATCCCTTTAAAAATTGTATTCACATTTTTTTCTTTTACTGTTGTTTCAATTAACCCTGCCAAAGTGACTTTATTCTTTTGTAAAAGCAGCTTAATCTCCTTCTGCTTATACCTTTTATCCATACCCCTCACATTCCAGAAAAACCACTTCATCAACATGTCTTTGATGTTCCACCTCTATCAATAGATAGTGAAGCCATTTGGTTATGTATGAGACTCTCAAACCAATTCCTTGTTGGTAAAGCTTTCAATATTGGAAAGTTAGCCAAACTCAATTCAAGTAGCGTATCTACATAAGACTGCTCACCATTATTCCTTGATATTTGCTGATCTAGCTTCTTTCCTATCTCCTATTCTTTCTCCTGCTTATTCTTCTGTGGACTAAGATTGTTCTCTTGTCTTTGCTCATCTATTTTCTCTTGCTCAGTCTTTTGCGAAATTGGACCTTTATACTGCCAAGTTTGAGTTACTTTTTTCCATGGCCTTCTTCTCTTTGGCATCTCTTCTTTTGGTTCTGGCTCCACTTGACATAGATGCCCTATCTTCTGGCACCTATCACAATATTGAGGCCTCCATTCTAATACTACTTCCTGCATAAATGTTTTCCCATTTGGATCCACTACTGCTATCTTCTGAGGTATAGTTTTTTTAACATTGACTTCAACAAGCATTGTAGCATATGAGATTCTTGTTTTCTTGGTGGTACATTCATCAGCAAAAAGAGGAACTCCAATAGCACTTGCAATCCTACTTAGAGATCCCACACCCCAACAGTTTAAAGGCCATTTTGGAAAATTCACCCACAAAGGAATTTCTGTTAGAAACTCACTTCCAAAATCAAACTCAGGACACCTTTGTTTCAGGATGATTGGTCGATTGTTGATAGTATATGGCCCAGAGAACAAAATCTCATTCATGTCACTATTCTTCTGAAACATGATTCGATAGTATCCATCCTCATGAAGAAACACATAAGGTTTATTCACACTTTACTAGTTCATTAATATGTATCTCTTCATAGTATTGTAGCAAGGGCATTCTCCAATCACATATGCAATGAGAGCACACTTCCATTTATGTTCTTCTTCTTGCACCTCTTTTTCTTCCAGCTGCACCATCGTTTTCCCATTCACTAACTTTGGAGAAAAATAGGATAAGTGCATTCTATTGGTTGCTACACGATTGTTCTTAAACATACTAACTCATGGTTCATTTGCCTCCTTCTTTTGTTCATTTTCATTACCACTATTTCAATCTCCATCTTCTCCATTTAGCTGCTCCTCTGAATTCCTTGTTACTGTTCCATTGCCATCAACCTTGTTTTCTTCATCAAACCCTTCAAGATCTGAGTTCTCAAGCGCTTCCTCATTAGTTCTTAGTGATTTTAAGCTCAATCTCCTTGCTACTTTAGTGCTTCTAGCTACCTCAGCTTCAAAACATGCTTCCCCTTTTTGAGCTTGTTCCTGCTCCTTTAACCCTAATGCTTCCACAGAAGTTCCTACTGAGCTACCAACGTTCATGATTGTTGTTCTC</genome_strand>
        <mrna_strand>TTTAGCACATAGAAGGGTTTACAATATTATCAATACATATTATTCGCTATTAAGAGCTTACTACGAATATCGTAAGAGAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGTGATTTCCCAAGCTTTGTGTTTTTTCCTCTCGTTCGATCCTCTTTCTCGTTCGACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTC-AAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAATATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAGCAGGAATAGTCAAAAACGTCCCTTAAAACAATTGAGGAATTCCGACTCAGACTGGGATTTACGCAGCCTGTGACAGCCCGTTGTGCCTGCGACGGTCCGTCCTGCAGGT-CGTCGCAAGGTTCAGAGACTGGATTTTCACTGAAGACTCTGTGATGGTCCATCACGCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACGGTCCGTCTTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTCCTAAGTGTTTTGAAATGAGACCCTGCGACGGTCCGTCGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCCGTCGTGGGGTCCGTCATTTCTGCCAGTTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590682" ref_strand="+" ref_description="SGN-U590682 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-28) Polyprotein,; ">
      <seq>ccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcggtgactcctccacctactgaagaagtaataagagaaggggaagatggggagaatgaacaagtgcaaaatgaggaattgccaccccagcctaccccagagatgataaatcaggtgctagcttatctgagtaggttgtctaatcaaggtcaagcacctccagtgtcttctgcaccaacacctccggtttcagaggtacaacatgcagccactatggctcctcgtatggatgcctcattagatataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggttcggtgttgagttcgtgagttatcaatttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcctcattttctagtttgnttatggagaagtatatcccccggactttgaggganaggaaaagggatgagtttttgagcctagagcaaggtannatgtcggtcaatgcatangangctaagtttcgtgcactatccnnatntgccactcaactttgtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="52572" stop="53924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52872" g_stop="53624" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-U590682" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52872" e_stop="53624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAGCCCGTCTGATACTAAAGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGCGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCCCCTCAAGTTTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGGAGCCACTATGGCTTCTCGTATGGATGCCTCATTGGACATAGGCACATTTCCACGTCTGACTACTGGGCCTATAATTACAAATGATCAGCATGAACTTTTCAGTGAGTTCTTGAAATTTAAACCTCCAGTCTTCAAGGGTGCTGGATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTATTACTCAAGAAGTGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATAAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACTTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCTCGGACTTTGAGGGATAGGAAGAAGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAAATATGCCACTCAACTTTGTTTCAG</genome_strand>
        <mrna_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCTACTGAAGAAGTAATAAGAGAAGGGGAAGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTAGCTTATCTGAGTAGGTTGTCTAATCAAGGTCAAGCACCTCCAGTGTCTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTTTCTAGTTTGNTTATGGAGAAGTATATCCCCCGGACTTTGAGGGANAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTANNATGTCGGTCAATGCATANGANGCTAAGTTTCGTGCACTATCCNNATNTGCCACTCAACTTTGTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592109" ref_strand="-" ref_description="SGN-U592109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=5e-59) Putative; ">
      <seq>ggaaaagggatgagttcttgancctatagcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="30091" stop="76032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53519" g_stop="53719" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53720" i_stop="54463" i_length="744">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.240" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54464" g_stop="54992" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="723" r_length="522" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-U592109" ref_strand="-">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53519" e_stop="53719"/>
          <exon e_start="54464" e_stop="54992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAAATATGCCACTCAACTTTGTTTCAGTCCACAAGAGTGGATTCGTCATTTTGTGAAGGGGTTGAGGTAAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTTGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTTACCGTGGCATCGACATCAAAGAGGTTTCGAAAAGGAGGTGACCTTAATGGTTCTTACTCTAGAGGACAGGGTTCTGGAGGTTACTCAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTAAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAAATGTCCAAAACAGAGTTATAGACCCCTAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGCCGAGGTGATGGGAAAACGAGAGCCACTACATCACAACATGGTAGGGTCAATGGACAGACAAACAATAGGGCCCATTGTTACGCTTTCCCTAGGCGGTCCGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATTGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACAATGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTGGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGAAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTGGATGTAATCCTGGGTATGACTTGGCTTTCTTCGCAATTTTTGATTTTGGATTGTAATGCTAACACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTTGTGTGGGAGGGTTACTACACTTCCAATCCGGTGCGTATCATCTCCTTTATTCGTGCTAGGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTCCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAAGCCCAACTACAAGAGTTGTTGAGCAAAGGCTTCATTAGACAAACTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGAGAAGAAGAAGGATGAGAGTTTTCAGATGTGCATAGACTACCG</genome_strand>
        <mrna_strand>GGAAAAGGGATGAGTTCTTGANCCTATAGCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TT--GTA-AAGATCG--G-CAGTTTTTGAATGTGCATAGACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594001" ref_strand="+" ref_description="SGN-U594001 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>taccaccccaaccgaacctccacaactacaacctacataaacatcagcacaacctaacaactcacagtttacatagaacgtaactctacaaaaacatttagacaaattacatatcctccacaacaacactttaacaaattacatatcctcaacatcaacacttaaacaaattagatatcctcaatagcaacacttccaaaaatttacatatcctcaataacacacttcaacaaatcacatatcctcaacaacaacacttcaacaaattatatatcctcaataacaagctcagtattcaacaatcacaagttccgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="63077" stop="70241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63377" g_stop="63567" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63568" i_stop="65026" i_length="1459">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65027" g_stop="65035" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="198" r_length="8" r_score="0.444"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65036" i_stop="69819" i_length="4784">
            <donor d_prob="0.261" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69820" g_stop="69941" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="319" r_length="121" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-U594001" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63377" e_stop="63567"/>
          <exon e_start="65027" e_stop="65035"/>
          <exon e_start="69820" e_stop="69941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCACCCCCAACCGAACCTCCACAACTTCAACCTGCATAAACATCAACCCAATCTAACAACTCACAGTTTACATAGAACGTAACTCAACAAAAACATATAGACAAATTACAAATCCTCCACAACAACACTTTAACAAATTACATATCCTCGACACCAACACTTTAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAAAGGCAATCACTAGATCAGCAAAACACAATATCATGTTCACTAATGATAAGTATGTGCAATGTAATGGAATGCAATGTCAAGTATAATGATGCATGTCTCACCTAGTGATACTCACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATTTGTCGCGGCGCACGACACAACCCTCGATAACAGTAAACATTGCGGTGTGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTTAAGTTATCATTCTTTCTCAATGCACATAACACTTTCACAACTATGTCTCAGAATAATGCAATGACATGTCCACACAAATAATGAGGAGATGACCATTTTCATAACATTGCACAGTTCACAACCACACAAACATGAAATAACATCAACAATGATTCAACAAGCCATCAAACTTTTCTCAACACATCACACATAAATAATTAATCACATCGCCTTTTGTTATCCCTTTTATTTTATCATTAGAATTAATCAATGTGGACAAGTCAACCCATCACCAATCCCGCTACTCCCAAACATATATCACAATGAAAATACACGCATTCCATACACTTAACAAGAGTTTAGAAATCCACTTGCCTCAATTTATCGAACAATCACTTCGGGACTTTAGCCTTCCTCCTTTGTTGCACTTCCAAATAAAATCTAGTCTATTCAAATAATTAAACACTATAAGGTTTCGAAGTTAACAACACACATATTGCACGTGTCTAGACTAAACCAAAAAAAAAACTCACGCAAATTTATAATTAAGTTCTTAAGTTTTAAGATTAGGATTAAAATTTTTAATTTCTTTTCAATATCATAAATCTTAAGACATTCACTTAATACCATATACCTAATACTTAATTATATAAATTAATATATCAAAACTTAAATGATAATATGGAAACTATTAAAAGGATCTCAAATTGATCCCAATTTATATCACCCGTATTTGAACACAAAAATAAAGATATTTCATGAAATACTTTTATACGGAAGGCTTCTTGCATGTCTATTTACCTCTCTTCCCAATAATTGTTTTATGATCATCAACAATTGGTCATAATTACTTAATGACTAAGGTGAAATTTATGCTAAATAACATATGCATACATGTACACAGAATCAAAAATTAGTTTCATATATTAGTGTAAATTATACACGTTTTAATCTAAAAATCTACTTCTAATTGCATGAAAACTTAATAGAAAGGATGAAAATAATTACCTTGACGCCTTGAGATGAAAATATTGATTTTTCTCCTCCTTTTTCATTTTCTTTTCTCCCTTTCTTTTCTTTTCTTTTCTGTTCTTTTTTCACATCATTCTTTTTTTTCTCATATAGCCGTCACAGGCTTGATAAGTTTAGGGCACTTTGCTCCCTTTTTTAATTATTTTATTTTATTATATTATATTATTTGATTTTCTTTTTTTTCCTTTCTCATTATTCTTAGCAATAAAATAAGTCTTTATTAAATCTAAAAATTATGTCTCTCATTCTTATAAGTCATAAATTATTTACAAAATCTACTAAAAAGATTAATATAATAATGCTGGTTAAAATTTCTAAAACGACTAAGAGGATCATTACATTATCCACCACTAAAAATCATGTTCGTCCTCGAACATAAAGTAGGAGAAGGAAGAATAACTAACACGACCAAAAACTTGAGGTATGATTTTCAAAGTCGTGTTCATCTCTCCAAGTGATCAATTCATCTTTAGCACATTCCATTAAATATCAACTACCAAGAACTGAAGTTTTGAACGAAACTTCGAAAGATTTACATATCACACCATAAACCAACCAATGAACCCAATCTCAACTGAAACCTACTGGAACATAACACAATCATCACAACAAATCTTTTCTTACATAACAAAGATAACATTTTGAATTCATACCCACTACAATCTGAAGTTAACCTAGATCAACGATCACATACACCTATTACACAAATCATCATAGACCTTATCAAGATTCCCTTGTCATAACCTAATCTTTTCATGAGCTTAAACTATGAAAATTTGATCTTTAGATATCGAATACTCATCAAGGGATAATCAAACATATCTAATCCAATGAAGAACATATCAAGTTAGCACCCAACAAATGGTACACGCTAGGATGCAGAACCTTTTACAACATTGTCGGATAACCATAATTATTCATGAAAGCTCTTTTGTAAGTTCCCATAAGCAAGGTTGTGCATATAAAAATAGTGATATATTTCTAATTTTTCAAACAACATCAAATATGTCATAACTGAAGTGACCTAGTCTGCCTAAAGAACATACCCTATCAAGAGAATATAAGAGGATCGGCACATCCGATCCACCACTAGGAATTCACCCATAGATGTAAAAAAAATGTGGGCATATGCAGTGAATCATACTCCAAATCATGTCCGAAACGAAGTAGGTGGTCAACTTAAGATTATACGGAATCAAGGTCGAATAACACTAGATACTTTATCCATAATCCCATATCAATATTTTCATTCATCTGACTATATCCCTCAATTTATTTTTTTTTATTTAATTTTTTTTTACCCAAAATCGACCAGTTGATCTCTATTACAATTTTACACATGTTGGATTTGCCAAACCCCATACTTCTCACAGTACTCCATCAAAGCCAACACTATTAATATTAACAAATATCATAACCACACCAACCATTTACCTTACTTTCACACCGTCAGTAGTATTACATTCTCCTTAGCAAGTACATTGTAGTCTCCAAGACTTTGAACTATGGTTTCTTATCTTTCCATTTAAGCGTCCCGTGATAGATATAAGTCACACCCAAGACCGATAACACTAATTTCAAATCTATATTTCTCCTTTAGGGTAAAATAAAAAAAGAAACACTTAATGTCAACTTCACCTAAACTTTCACATACCATTTTCAACCACCATCTGTACTATCATTTACCTCATGCAATAACTCAAACAAACCCTTGATCACTCCAATATTAATGTATACTATAATCTCATAACCTCTACTCACCATAAAATATCTACGTAACACATTATAACAATCTATTTTGTCTCGTCAACAAAATAATTTTAATCCCCTCCAATCCTCATTAATCATTTAAAATTGTAGGTCCACACTATTTAACATCCATTTAATACTTAATCACATTCTGAACAATCTAGCTCGACATAACCATATGTAATCTTCCATACGTCATTTATTGTAACCCAATCAAAACATAATATTTAGAAAAGTTAATAATACACACATAGTAAGTAGGTGCCGAACTAGTTCACATCTCATAGTCATATCTAAACTCAAAGGCGAAATCACTACAACCACCACCTCCGAATCCAATGTTTGTACGAGAGGTCTTATTGTTCCTTTGCCTTTCTTAAAATCTTTCCACAACGAAAATTTCAAATAACTTTAACTCTTCAATACACCATAATTTTTCTCCTTTTTGCTAACTCACATACCAGTCTTATATATATATTTTTTTTGGCCAACAATATGGGAAACCTTAGGTATAACAATCAAAAGTAACCAAATGTACTACTCAAATTTTAAGTCCTTCTAAATGCTTCATACTCAATGTAATCGATCATTTCATACCTTACCAATTCATACCTTGACAAGATACACTATCACAAATCTAAACTCGCCATGTAAACTTGAAGTTTTGATCCCAACCATGTAACACAATCCCATTATCTTACAACATTAGCTTAAAAAAAAAATTACTTAACGTATTTTAGCTTATTGTTGATCGCCTCTTCATTGACCCTACCATATCTTTTTTTTTAAATCTTATCGTACTCCTTACAAAATCAAAACCAAAAAAAGAAATAATCATCATACTCGAATTGAACGTCTGTACACTCCTTTCTCAAATTTTTTCCAATAGTTTATTTTTTTTAATCAATCTATTGATCTTGTGACACTATATTATATCATAATCTGGAAGAAACAGGTAAAATCACTTGTCTCTGAACCCAATTCTCCAAATTCCTCTGAAGATACATCCTCAACCCTTGCAAACAAAGTAAAATAGCCTAGTTTTATCCTCGCTCTGAAAGTTAAACTATTTACCACTAATTCTTTCCATTATGGCTCTAGCTCCTTTCAATTTTATTCGATCACATCCCAACTCCTTATAAAAATTACCATAAAACCACACTACTTATGAAATAGAAACAACCATAATCTTAGATACTCAAAATTCATCATTACCATAAAAAAATTATTTTAACCAACACCCGTATCATATAGTTGCATTTCAATTGTAATGCGTCATAAAATCTTATAATCATCATGCTTAGTTCGTCATTACCCTCACTACGAATTTAGCCTCGCCATTAACATGACAATACAAACCTAGCTATGCCAACCATCCAAGGTACTTACTCAATTTATATGCACTTTCTTACTAAAATTCTCAATTACATTCACACAAGTATACTTTTTGAGATTTCCTTTACTTGTAATTTAATCATCCATATTTCCACTTCCACGGAATTTAAGATGAAATCAACACTCATTTACAATCCACAAAATACATTTTACAACCTGAACATATTAATATCATACCAAGGATCCACCACTAAAAGCTTCCTTATAAATAATGCTTAACACATCCACTCGTACTAACAAGCTAGTTGGTATTTCGAATATGAATTCAACACCAAATCTTATCATATGAGCATGTAATACAATAGATAAGTCCTAAAGTAGTTAGTATTTTCACTTAACAATCAACATGTCCGTTTTCATGTACCACTAGTAACACATCGTGAAAATTCATTACATCCACCACTAGAACATATCATATCTATCGAGAAGATCAATTCCAAATAAGTCACACACTTTATCCATCAAATAGCTGTAAAATATACCAGATTAGTTTTGTATCTAACCCAAGCTATATGTATCCTTTCGTAAGCAAGGTCAATATCAAAAGTAACACACTCCATAATTCTAACCAAGTACCCATCAGTACCATTGTAATAGTCGTATCATGACCTTCTTTGGTATGCACTCAATCTGTGAAACGACATAAGGGATTCCGACCTGAATTGGTGCAACATCATTTGCTAAGCAACTCATTAATGGTATGACAACTATATCAATTGTATTTTTCAAGTTTACACTATTTATTATCTAGTTAATTCTCCAAACATTTAACATCTAATTGTTGAACCACTCCATGTTGAACCACTCCATATTTTGCTTAGACCAGATAAGTACTATATTTATTATTATTATTTTACAATGATAACTAACCTTACTCAACTCTTTTAAATATGATCACACATTCGTTTCATAAGTATATCATTTCCACCTTAATATGAGATCTAACATCAAACCAATACACGACATGCCACTGATTCACAAAAGGAACTACGCACGAGTCATCACATAAACGAGAGCGAATGGTGTGAAGCAATAAGAATCAAATGGGACCAAGTATGCACAAGAGAGATCCAAGAATTGAAGATATTTCCTAAAAGTCACTATTGTCTCTCGAAGATAGGTACATACGTCTCCGTACCGATCATCAAGACTCTATTTAGACTCGACTTGTACACACGTGAGACCTATGAACCTGGGGCTCTAATACCATTTTGTCACGACCCAAAAATGGACGTGATGGCACTCGTCTTATCCCACCAAGACAAGTAAGCCTAAAACTCAACTATTACAATAAAAATGCGGAAAATTTACTATCAACTTACATTATACCCCAAAACCTGGTTGTCACGTGTACAAGCCTCTAAAGTATTACAATCGGATCAAAAGAAAATATAAGTCTCATATAATATTGTTTCTAGAGTAGAATAAAATCATAAACAAGAGTAACTAGTGATGCTGAGATGACCAACAACTACCTCACAAAATCTCCAGGAAGCCTCAGAAAAGAAGAGAATATATCATAAAAGTCCGGGTTAGTAACCTACAAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAACCTCTAAACACAAGCTAGGAGGATGATATACGGGTACTCCTACCACCCCCAACCGAACCTCCACAACTACAACCTGCATAAACGTCAACCCAACCTAACAACTCACAGTTTACATAGAACGTAACTCAACAAAAACATATAGACAAATTACATATCCTCCACAACAACACTTTAACAAATTACATATCCTCCACAATAACACTTTAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</genome_strand>
        <mrna_strand>TACCA-CCCCAACCGAACCTCCACAACTACAACCTACATAAACATCAGCACAACCTAACAACTCACAGTTTACATAGAACGTAACTCTACAAAAACATTTAGACAAATTACATATCCTCCACAACAACACTTTAACAAATTACATATCCTCAACATCAACACTTAAACAAATTAGATATCCTCAATAGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTCCA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTACATATCCTCAATAAC-ACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="-" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="77869" stop="76777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77569" g_stop="77077" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="-" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77569" e_stop="77077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAATTCAGCATGCAATGTTCTCCAAAACATAGAAGTAAACTGCGTACCTCTATCTGAT-TGATGGATAGTGGAACCCCATGCAACCGAACGATTTCTGAGATATAGATCTTGGCTAACTTCTCTGCATTGTAAGTCACCTTTACCGGAATGAAATGAGCAGATTTAGTTAACCTATCAACAATCACCCAGATAGAATCATACTTACCCATCATCTTTGGAACACCAACCACGAAGTCCATTGCGATTCTCTCCCATTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTAACAGTTTGGTCATTTGGCAATAAAATCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTTCATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTTGATCAAATCATCGATGCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTG-TTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0133O02-Q1IbT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0133O02.1" temp_strand="+" temp_description="C00SLm0133O02.1  CU928472.3 htgs_phase:3 submitted_to_sgn_as:C00SLm0133O02 sequenced_by:sanger upload_account_name:uk">
        <position start="146451" stop="147375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146750" g_stop="147075" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0133O02.1" gen_strand="+" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0133O02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146750" e_stop="147075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTCCCAGGTTTGGTTAACGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAACCAATTCATACCCAGAATTACATCGAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCAAAAACGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACTGGAGTAGAAACACAAATAGGCATGCCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAAGAAGATACATATGAAAATGTGGATCAAGGATCAAATAATACGGAAGCCATGCAATCGC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="18175" PGL_stop="20366"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18175" e_stop="20366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="18175" e_stop="20366" e_length="2192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18175" stop="20366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18175" stop="19600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAGCAACGGCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAACACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGATTGAGGAGGTAATAAGAGAAGGGTAGGATGGGGAAAATGAACAAGTGCAGAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCATCTCAGGCTCCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCAGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGACACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACCTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAAGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGCATTGCGGATTTCGGCCTTACAGATAGCCGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGGGGAAGGAGTGAAGCCAGACGACTTCATTACGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTGGAGGACACGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTATTCACTACAGACTGTAGTTGGAAGACCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTACGGATGTGGGGAGACTGGACATATTAGGAGAAATTGTCCAAAACAGAGTTACAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTTTTCTGGAGGGCGTGGTGGTCGAGGAAATCGTGGTCTCCAAAACGGCCAAGGTGATAGGCAAGCTGGAGCCACTACATCATAACATGGTAGGGGCAACGGACAGACGAACGATGGGGCCCATTGTTACGCTTTCCCTGTGCGGTCTGAAGCAGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCTTGGATCCACCTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTACATTTACATTGTGAATTTCTTGATATGCCTACTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTGATTCTGGGAATGACTTGGCTTTCTCCGCAATTTGCAATATTGGATTGTAATTCTAAAATGGTGACGTTAGCCAAGCCTGGGACAAACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCTGGTGCGTATCATCTTCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATTACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTCTGTATTGAATTTGAACCGGGTACTTGTCCCATTTCGATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGCCCAAGTGCATCTCCGTAGGGTGCTCGGGTTTTGTTTTTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACATACAACTAAAAAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATG</gDNA_template>
            <first_frame> K  S  N  G  K  R  P  W  *  R  S  W  E  D  V  L  *  G  K  R  T  N  T  *  S  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  V  G  W  G  K  *  T  S  A  E  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  I  S  G  S  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  G  L  Q  G  C  *  I  R  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  M  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  D  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  L  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  V  F  Q  S  T  R  A  N  S  P  V  C  E  G  V  E  V  S  I  A  D  F  G  L  T  D  S  R  N  G  K  I  L  P  R  G  G  R  L  C  D  R  R  G  R  S  E  A  R  R  L  H  Y  D  I  D  I  K  K  V  S  K  G  R  *  V  *  W  C  L  H  W  R  T  R  F  G  K  L  L  S  P  T  N  S  V  F  T  T  D  C  S  W  K  T  T  S  D  R  S  T  L  L  R  E  T  Y  A  *  L  Q  R  V  L  R  M  W  G  D  W  T  Y  *  E  K  L  S  K  T  E  L  Q  T  P  N  S  *  R  *  R  W  S  W  *  R  P  F  F  W  R  A  W  W  S  R  K  S  W  S  P  K  R  P  R  *  *  A  S  W  S  H  Y  I  I  T  W  *  G  Q  R  T  D  E  R  W  G  P  L  L  R  F  P  C  A  V  *  S  R  G  I  *  C  C  H  H  R  *  S  S  G  L  *  L  H  G  F  C  I  V  *  S  W  I  H  L  F  L  C  I  F  L  I  C  *  W  S  T  F  T  L  *  I  S  *  Y  A  Y  S  C  F  Y  S  G  G  *  V  C  G  S  *  K  G  I  *  V  L  F  G  K  L  C  G  E  Q  H  L  C  R  F  G  Y  L  R  N  G  *  F  *  C  D  S  G  N  D  L  A  F  S  A  I  C  N  I  G  L  *  F  *  N  G  D  V  S  Q  A  W  D  K  P  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  L  H  Y  P  S  T  F  D  *  V  G  F  S  S  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  F  L  Y  *  I  *  T  G  Y  L  S  H  F  D  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  K  Q  R  L  Y  *  P  K  C  I  S  V  G  C  S  G  F  V  F  K  E  E  G  W  E  F  S  N  V  Y  R  L  H  T  T  K  K  G  N  H  K  E  Q  V  S  S  S  P  H  *   </first_frame>
            <second_frame>  R  A  T  A  R  G  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  T  P  S  P  S  D  T  R  A  V  T  P  P  P  I  E  E  V  I  R  E  G  *  D  G  E  N  E  Q  V  Q  N  E  E  M  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  S  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  W  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  T  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  K  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  A  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  V  I  E  G  E  G  V  K  P  D  D  F  I  T  T  S  T  S  K  R  F  R  K  G  G  E  F  N  G  A  Y  T  G  G  H  G  S  G  S  Y  S  V  R  P  I  Q  Y  S  L  Q  T  V  V  G  R  P  P  Q  T  G  Q  H  F  S  E  R  P  M  L  D  S  R  E  C  Y  G  C  G  E  T  G  H  I  R  R  N  C  P  K  Q  S  Y  R  P  P  I  A  R  G  R  G  G  H  G  R  G  R  F  S  G  G  R  G  G  R  G  N  R  G  L  Q  N  G  Q  G  D  R  Q  A  G  A  T  T  S  *  H  G  R  G  N  G  Q  T  N  D  G  A  H  C  Y  A  F  P  V  R  S  E  A  E  A  S  D  A  V  I  T  G  N  L  L  V  C  D  C  M  A  S  V  L  F  D  L  G  S  T  F  S  Y  V  S  S  S  F  A  N  G  L  H  L  H  C  E  F  L  D  M  P  T  R  V  S  T  P  V  G  E  S  V  V  V  E  K  V  Y  R  S  C  L  V  N  F  V  G  S  N  T  Y  V  D  L  V  I  L  E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  S  K  M  V  T  L  A  K  P  G  T  N  P  L  V  W  E  G  D  Y  T  S  N  L  V  R  I  I  F  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  Y  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  E  F  E  P  G  T  C  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  S  P  S  A  S  P  *  G  A  R  V  L  F  L  K  K  K  D  G  S  F  R  M  C  I  D  Y  I  Q  L  K  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  </second_frame>
            <third_frame>   E  Q  R  Q  E  A  V  V  E  V  V  G  G  R  P  L  G  E  E  D  E  H  L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  M  N  K  C  R  M  R  K  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  H  L  R  L  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  R  S  S  R  V  L  N  Q  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  P  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  R  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  C  V  S  V  H  K  S  E  F  A  G  L  *  R  G  *  G  Q  H  C  G  F  R  P  Y  R  *  P  Q  R  Q  N  P  S  K  R  W  *  T  L  *  *  K  G  K  E  *  S  Q  T  T  S  L  R  H  R  H  Q  K  G  F  E  R  E  V  S  L  M  V  L  T  L  E  D  T  V  R  E  V  T  Q  S  D  Q  F  S  I  H  Y  R  L  *  L  E  D  H  L  R  P  V  N  T  S  P  R  D  L  C  L  T  P  E  S  V  T  D  V  G  R  L  D  I  L  G  E  I  V  Q  N  R  V  T  D  P  Q  *  L  E  V  E  V  V  M  V  E  A  V  F  L  E  G  V  V  V  E  E  I  V  V  S  K  T  A  K  V  I  G  K  L  E  P  L  H  H  N  M  V  G  A  T  D  R  R  T  M  G  P  I  V  T  L  S  L  C  G  L  K  Q  R  H  L  M  L  S  S  Q  V  I  F  W  F  V  I  A  W  L  L  Y  C  L  I  L  D  P  P  F  L  M  Y  L  P  H  L  L  M  V  Y  I  Y  I  V  N  F  L  I  C  L  L  V  F  L  L  R  W  V  S  L  W  *  L  K  R  Y  I  G  L  V  W  *  T  L  W  G  A  T  L  M  *  I  W  L  S  *  K  W  M  I  L  M  *  F  W  E  *  L  G  F  L  R  N  L  Q  Y  W  I  V  I  L  K  W  *  R  *  P  S  L  G  Q  T  R  *  C  G  R  V  T  T  L  P  I  W  C  V  S  S  S  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  I  T  L  P  K  Y  L  R  L  S  R  F  Q  *  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  I  S  V  L  N  L  N  R  V  L  V  P  F  R  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  T  K  A  L  L  A  Q  V  H  L  R  R  V  L  G  F  C  F  *  R  R  R  M  G  V  F  E  C  V  *  T  T  Y  N  *  K  R  *  P  *  R  T  S  I  L  F  P  A  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18308" stop="19459"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1149</number_coding_nucleotides>
                  <number_encoded_amino_acids>383</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGENEQVQNEEMPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPASQAPEVQHAATMAPRMDASLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVEWFGVEFVTYQFQGNAKMWWRSHIECQPTETPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGKMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSALRISALQIAATAKSFQEVVDFVIEGEGVKPDDFITTSTSKRFRKGGEFNGAYTGGHGSGSYSVRPIQYSLQTVVGRPPQTGQHFSERPMLDSRECYGCGETGHIRRNCPKQSYRPPIARGRGGHGRGRFSGGRGGRGNRGLQNGQGDRQAGATTS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19460" stop="20251"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGRGNGQTNDGAHCYAFPVRSEAEASDAVITGNLLVCDCMASVLFDLGSTFSYVSSSFANGLHLHCEFLDMPTRVSTPVGESVVVEKVYRSCLVNFVGSNTYVDLVILEMDDFDVILGMTWLSPQFAILDCNSKMVTLAKPGTNPLVWEGDYTSNLVRIIFFLRAKKMVSKGCLAFLAHLKDYTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIEFEPGTCPISIPPYRMAPAELRELKAQLQELLNKGFISPSASP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="19682" PGL_stop="18175"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19682" e_stop="18175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="19682" e_stop="18175" e_length="1508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19682" stop="18175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACGAGTAGGCATATCAAGAAATTCACAATGTAAATGTAGACCATTAGCAAATGAGGAAGATACATAAGAAAAGGTGGATCCAAGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCTGCTTCAGACCGCACAGGGAAAGCGTAACAATGGGCCCCATCGTTCGTCTGTCCGTTGCCCCTACCATGTTATGATGTAGTGGCTCCAGCTTGCCTATCACCTTGGCCGTTTTGGAGACCACGATTTCCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCCCCACATCCGTAACACTCTCTGGAGTCAAGCATAGGTCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCTTCCAACTACAGTCTGTAGTGAATACTGAATTGGTCGGACTGAGTAACTTCCCGAACCGTGTCCTCCAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAATGAAGTCGTCTGGCTTCACTCCTTCCCCTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCGGCTATCTGTAAGGCCGAAATCCGCAATGCTGACCTCAACCCCTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCTTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAGGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGTCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCTGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGGAGCCTGAGATGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTTGTTCATTTTCCCCATCCTACCCTTCTCTTATTACCTCCTCAATCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGTTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGCTCTT</gDNA_template>
            <first_frame> H  E  *  A  Y  Q  E  I  H  N  V  N  V  D  H  *  Q  M  R  K  I  H  K  K  R  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  L  L  Q  T  A  Q  G  K  R  N  N  G  P  H  R  S  S  V  R  C  P  Y  H  V  M  M  *  W  L  Q  L  A  Y  H  L  G  R  F  G  D  H  D  F  L  D  H  H  A  L  Q  K  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  C  N  S  V  L  D  N  F  S  *  Y  V  Q  S  P  H  I  R  N  T  L  W  S  Q  A  *  V  S  R  R  S  V  D  R  S  E  V  V  F  Q  L  Q  S  V  V  N  T  E  L  V  G  L  S  N  F  P  N  R  V  L  Q  C  K  H  H  *  T  H  L  P  F  E  T  F  L  M  S  M  S  *  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  R  L  S  V  R  P  K  S  A  M  L  T  S  T  P  S  Q  T  G  E  F  A  L  V  D  *  N  T  V  G  W  H  T  G  I  M  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  R  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  S  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  I  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  L  I  Q  H  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  E  P  E  M  L  V  Q  K  T  L  G  V  S  G  P  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  S  A  L  V  H  F  P  H  P  T  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  D  *  V  F  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L   </first_frame>
            <second_frame>  T  S  R  H  I  K  K  F  T  M  *  M  *  T  I  S  K  *  G  R  Y  I  R  K  G  G  S  K  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  C  F  R  P  H  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  L  A  V  L  E  T  T  I  S  S  T  T  T  P  S  R  K  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  V  T  L  F  W  T  I  S  P  N  M  S  S  L  P  T  S  V  T  L  S  G  V  K  H  R  S  L  G  E  V  L  T  G  L  R  W  S  S  N  Y  S  L  *  *  I  L  N  W  S  D  *  V  T  S  R  T  V  S  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  N  E  V  V  W  L  H  S  F  P  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  G  Y  L  *  G  R  N  P  Q  C  *  P  Q  P  L  H  K  P  A  N  S  L  L  W  T  E  T  Q  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  I  D  R  H  L  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  G  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  *  F  S  T  L  E  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  W  S  L  R  C  W  C  R  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  L  L  N  R  W  R  S  H  C  P  S  I  R  W  T  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  S  </second_frame>
            <third_frame>   R  V  G  I  S  R  N  S  Q  C  K  C  R  P  L  A  N  E  E  D  T  *  E  K  V  D  P  R  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  T  G  K  A  *  Q  W  A  P  S  F  V  C  P  L  P  L  P  C  Y  D  V  V  A  P  A  C  L  S  P  W  P  F  W  R  P  R  F  P  R  P  P  R  P  P  E  K  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  L  P  T  T  V  C  S  E  Y  *  I  G  R  T  E  *  L  P  E  P  C  P  P  V  *  A  P  L  N  S  P  P  F  R  N  L  F  D  V  D  V  V  M  K  S  S  G  F  T  P  S  P  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  A  D  L  N  P  F  T  N  R  R  I  R  S  C  G  L  K  H  S  W  V  A  Y  R  D  N  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  V  S  V  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  H  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  G  A  *  D  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  C  T  C  S  F  S  P  S  Y  P  S  L  I  T  S  S  I  G  G  G  V  T  A  L  V  S  D  G  L  G  V  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  V  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19143" stop="18754"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APLNSPPFRNLFDVDVVMKSSGFTPSPSITKSTTSWKDFAVAAICKAEIRNADLNPFTNRRIRSCGLKHSWVAYRDNARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGVSVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19453" stop="19199"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITLAVLETTISSTTTPSRKTASTMTTSTSSYWGSVTLFWTISPNMSSLPTSVTLSGVKHRSLGEVLTGLRWSSNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18397" stop="18176"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWHFLILHLFIFPILPFSYYLLNRWRSHCPSIRWTRCSSSSPRGRPPTTSTTASCRCS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="22365" PGL_stop="22189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22365" e_stop="22189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="22365" e_stop="22189" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22365" stop="22189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAAAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTAAGGCTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  *  G  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  I  P  L  R  V  K  S  Y  P  N  D  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  F  A  K  A  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  F  R  *  G  *  K  A  I  P  M  T  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0133O02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="23705" PGL_stop="23849"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23705" e_stop="23849"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="23705" e_stop="23849" e_length="145"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23705" stop="23849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAGTATTGAATCCCAAATCTTGAAAGAAACTTTAATATACATTATTAATGATGATGTCTTGGTATA</gDNA_template>
            <first_frame> Y  C  K  P  Y  Y  M  L  N  G  M  F  A  *  I  *  L  C  D  C  D  K  I  S  M  M  K  V  L  N  P  K  S  *  K  K  L  *  Y  T  L  L  M  M  M  S  W  Y  </first_frame>
            <second_frame>  I  V  N  P  T  I  C  L  M  V  C  L  H  E  Y  D  Y  V  I  V  I  R  *  A  *  *  K  Y  *  I  P  N  L  E  R  N  F  N  I  H  Y  *  *  *  C  L  G  I </second_frame>
            <third_frame>   L  *  T  L  L  Y  A  *  W  Y  V  C  M  N  M  I  M  *  L  *  *  D  K  H  D  E  S  I  E  S  Q  I  L  K  E  T  L  I  Y  I  I  N  D  D  V  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0133O02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="28307" PGL_stop="28904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28307" e_stop="28396"/>
            <exon e_start="28473" e_stop="28904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.933"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="28307" e_stop="28396" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28397" i_stop="28472" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="28473" e_stop="28904" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28307" stop="28396"/>
              <exon start="28473" stop="28904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593741" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACCCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATTAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCAC : GTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACATTCCGACACTAGGATAGAATATGGATCGGGTGCCACGTTCTGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTATCACGTACCGACACGATGGGAATAAAGATAATGAATCTTGAAAGATATTAATATATTCAATCTAATGAACCGAATTCCCAAATGAGTATGATGACGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAAGGTTATGCTAACTGTGAATGTTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATAGT</gDNA_template>
            <first_frame> K  P  *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  *  *  K  *  *  D  *  G  I  G  C  H  :  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  I  P  T  L  G  *  N  M  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  M  G  I  K  I  M  N  L  E  R  Y  *  Y  I  Q  S  N  E  P  N  S  Q  M  S  M  M  T  R  R  E  S  S  L  M  C  L  V  L  *  P  K  V  M  L  T  V  N  V  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  S </first_frame>
            <second_frame>  N  P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  I  N  E  S  S  E  I  R  G  S  G  A  T :   F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  *  D  R  I  W  I  G  C  H  V  L  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  Y  H  V  P  T  R  W  E  *  R  *  *  I  L  K  D  I  N  I  F  N  L  M  N  R  I  P  K  *  V  *  *  R  G  V  S  P  H  *  C  A  W  C  C  N  Q  R  L  C  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </second_frame>
            <third_frame>   T  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  L  M  K  V  V  R  L  G  D  R  V  P   : R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  H  S  D  T  R  I  E  Y  G  S  G  A  T  F  W  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  I  T  Y  R  H  D  G  N  K  D  N  E  S  *  K  I  L  I  Y  S  I  *  *  T  E  F  P  N  E  Y  D  D  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  A  N  C  E  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0133O02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="29756" PGL_stop="32307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29756" e_stop="30622"/>
            <exon e_start="31738" e_stop="32307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.909"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="29756" e_stop="30622" e_length="867"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30623" i_stop="31737" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="0.953">
            <gDNA_exon_boundary e_start="31738" e_stop="32307" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29756" stop="30622"/>
              <exon start="31738" stop="32307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29790" stop="30345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTGGGAGGACGTTCTCTAGAGGAAGAGGACGAGCACCTATCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATTAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTTTGTCTTATCTTAGCGGGTTATCTAATCAGGGTTAGGCACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCAAGGAGGCCTCATTGGAAATAGGCATGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGACTACAATTTTCTGGTTGATTGTCATGAGCTACTACACAAGATGGGTATAGTAGAAGGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGATCACATGTTGAGTGTCAACCGACAGAAGCAACACCTATGACTTGAGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTACGTTTCGTGCACTATCCAGATACGCCACGCAGCTTTGCTTCAGTCCACAAGAGAGAATTCACTGATTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTACAGGTAGCGGCTACGACAAAATCCTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTGGAAGG : AGTTAAAGGTCAAACTTCAAGAGTTGTTGAACAAGGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGCTTTCGGATGTGCATAGACTACCGGTAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTAGAAGGTGCTTCTGTCTTCTCTAAGATTGACTTCAGATCCGGCTATCATCAATTGAAAATACGGGCAACGGACGTGCCAAAGACGGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGTCCCTGCTACGTTCATGAGTTTGATGAACGAGATTTTTAACCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTCTGGCTAGATGCAGTGTCCTTCATGGGGCACGTGGTTTCTA</gDNA_template>
            <first_frame> S  W  E  D  V  L  *  R  K  R  T  S  T  Y  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  S  K  R  G  *  G  R  G  E  *  T  S  A  K  L  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  F  V  L  S  *  R  V  I  *  S  G  L  G  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  Q  G  G  L  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  *  L  Q  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  R  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  I  T  C  *  V  S  T  D  R  S  N  T  Y  D  L  S  L  I  L  *  L  V  Y  G  E  V  Y  P  P  D  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  *  C  L  *  G  Y  V  S  C  T  I  Q  I  R  H  A  A  L  L  Q  S  T  R  E  N  S  L  I  C  E  G  V  E  V  R  I  A  D  F  S  L  T  G  S  G  Y  D  K  I  L  S  R  S  G  R  L  R  D  R  G  G  R  :  S  *  R  S  N  F  K  S  C  *  T  R  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  A  F  G  C  A  *  T  T  G  S  *  T  R  *  P  *  R  T  S  I  L  F  L  A  L  M  T  C  S  I  S  *  K  V  L  L  S  S  L  R  L  T  S  D  P  A  I  I  N  *  K  Y  G  Q  R  T  C  Q  R  R  L  L  E  P  G  M  G  I  T  N  L  *  *  C  L  L  V  L  R  M  S  L  L  R  S  *  V  *  *  T  R  F  L  T  H  I  W  I  S  L  *  S  Y  L  L  M  I  Y  *  Y  T  L  K  V  R  R  N  M  R  S  I  *  E  W  Y  W  K  C  *  G  R  K  S  F  M  P  S  S  L  S  V  S  S  G  *  M  Q  C  P  S  W  G  T  W  F  L </first_frame>
            <second_frame>  R  G  R  T  F  S  R  G  R  G  R  A  P  I  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  *  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  S  Y  L  S  G  L  S  N  Q  G  *  A  P  P  V  F  S  A  P  A  P  Q  V  P  E  V  Q  H  A  A  T  M  A  P  R  K  E  A  S  L  E  I  G  M  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  K  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  D  Y  N  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  G  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  T  P  M  T  *  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  T  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  H  *  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  T  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G :   V  K  G  Q  T  S  R  V  V  E  Q  G  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  L  S  D  V  H  R  L  P  V  V  E  Q  G  N  H  K  E  Q  V  S  S  S  S  H  *  *  L  V  R  S  V  R  R  C  F  C  L  L  *  D  *  L  Q  I  R  L  S  S  I  E  N  T  G  N  G  R  A  K  D  G  F  *  N  Q  V  W  A  L  R  I  C  S  D  V  F  W  S  Y  E  C  P  C  Y  V  H  E  F  D  E  R  D  F  *  P  I  F  G  S  L  C  D  R  I  Y  *  *  Y  T  D  I  L  *  K  *  G  G  T  *  G  A  F  E  N  G  I  G  N  V  E  G  E  K  A  L  C  Q  V  L  *  V  *  V  L  A  R  C  S  V  L  H  G  A  R  G  F   </second_frame>
            <third_frame>   V  G  G  R  S  L  E  E  E  D  E  H  L  S  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  R  V  R  K  G  R  M  N  K  C  K  I  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  C  L  I  L  A  G  Y  L  I  R  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  R  L  L  W  L  P  A  R  R  P  H  W  K  *  A  C  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  I  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  T  T  I  F  W  L  I  V  M  S  Y  Y  T  R  W  V  *  *  K  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  D  H  M  L  S  V  N  R  Q  K  Q  H  L  *  L  E  P  H  S  L  A  C  L  W  R  S  I  S  P  G  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  L  M  L  M  R  L  R  F  V  H  Y  P  D  T  P  R  S  F  A  S  V  H  K  R  E  F  T  D  L  *  R  G  *  G  Q  N  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  F  K  K  W  *  T  S  *  *  R  W  K   : E  L  K  V  K  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  *  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  D  L  F  D  Q  L  E  G  A  S  V  F  S  K  I  D  F  R  S  G  Y  H  Q  L  K  I  R  A  T  D  V  P  K  T  A  F  R  T  R  Y  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  V  P  A  T  F  M  S  L  M  N  E  I  F  N  P  Y  L  D  L  F  V  I  V  F  I  D  D  I  L  I  Y  S  K  S  K  E  E  H  E  E  H  L  R  M  V  L  E  M  L  R  E  K  K  L  Y  A  K  F  S  K  C  E  F  W  L  D  A  V  S  F  M  G  H  V  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31869" stop="32306"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNKVTIKNKYPLPRIDDLFDQLEGASVFSKIDFRSGYHQLKIRATDVPKTAFRTRYGHYEFVVMSFGLTNVPATFMSLMNEIFNPYLDLFVIVFIDDILIYSKSKEEHEEHLRMVLEMLREKKLYAKFSKCEFWLDAVSFMGHVVS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29967" stop="30335"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APPVFSAPAPQVPEVQHAATMAPRKEASLEIGMFPRLTTGPIMTNDQHKLFSKFLKLKPPVFKGAESEDDYNFLVDCHELLHKMGIVEGFGVEFVTYQFQGNAKMWWRSHVECQPTEATPMT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="31445" PGL_stop="31120"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31445" e_stop="31120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="31445" e_stop="31120" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31445" stop="31120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATCGATCCCAGGCTTGGCTAACATCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGTTCCTCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGACTAGAAACACCAATAGGCATATCAAGTAATTCACAATGTAAATTCAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCAC</gDNA_template>
            <first_frame> R  I  D  P  R  L  G  *  H  H  R  F  S  I  T  I  Q  D  R  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  I  Y  I  S  V  V  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  T  R  N  T  N  R  H  I  K  *  F  T  M  *  I  Q  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I   </first_frame>
            <second_frame>  G  S  I  P  G  L  A  N  I  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  F  L  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  L  E  T  P  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  </second_frame>
            <third_frame>   D  R  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  S  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  S  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  D  *  K  H  Q  *  A  Y  Q  V  I  H  N  V  N  S  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0133O02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="32435" PGL_stop="31624"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32435" e_stop="31624"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="32435" e_stop="31624" e_length="812"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32435" stop="31624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACAAATCGGCGGTATTAGCTAGCTAACACAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTCTCTCAATCTTAGAAGGATCACCATCACTCAATCCTTAGAAACCACGTGCCCCATGAAGGACACTGCATCTAGCCAGAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGGTTAAAAATCTCGTTCATCAAACTCATGAACGTAGCAGGGACATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCCGTCTTTGGCACGTCCGTTGCCCGTATTTTCAATTGATGATAGCCGGATCTGAAGTCAATCTTAGAGAAGACAGAAGCACCTTCTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTACCGGTAGTCTATGCACATCCGAAAGCTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCCTTGTTCAACAACTCTTGAAGTTTGACCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTAACCGGTTCAAGGTCAATAAAGAAGTCAATATACCTATCTGGTGGCATACCAGGAAGATCTA</gDNA_template>
            <first_frame> R  I  P  *  Q  I  G  G  I  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  H  H  H  S  I  L  R  N  H  V  P  H  E  G  H  C  I  *  P  E  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  V  K  N  L  V  H  Q  T  H  E  R  S  R  D  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  R  L  W  H  V  R  C  P  Y  F  Q  L  M  I  A  G  S  E  V  N  L  R  E  D  R  S  T  F  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  A  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  L  V  Q  Q  L  L  K  F  D  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  N  R  F  K  V  N  K  E  V  N  I  P  I  W  W  H  T  R  K  I   </first_frame>
            <second_frame>  E  S  L  D  K  S  A  V  L  A  S  *  H  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  S  L  N  L  R  R  I  T  I  T  Q  S  L  E  T  T  C  P  M  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  S  F  I  K  L  M  N  V  A  G  T  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  E  A  P  S  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  Y  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  L  T  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  T  G  S  R  S  I  K  K  S  I  Y  L  S  G  G  I  P  G  R  S  </second_frame>
            <third_frame>   N  P  L  T  N  R  R  Y  *  L  A  N  T  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  L  S  I  L  E  G  S  P  S  L  N  P  *  K  P  R  A  P  *  R  T  L  H  L  A  R  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  D  P  N  M  G  *  K  S  R  S  S  N  S  *  T  *  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  P  S  L  A  R  P  L  P  V  F  S  I  D  D  S  R  I  *  S  Q  S  *  R  R  Q  K  H  L  L  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  T  G  S  L  C  T  S  E  S  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  P  C  S  T  T  L  E  V  *  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  *  P  V  Q  G  Q  *  R  S  Q  Y  T  Y  L  V  A  Y  Q  E  D  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32270" stop="31932"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PELTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYIINKYDHKEIQIWVKNLVHQTHERSRDIRKTKRHHYKFVMPIPGSKSRLWHVRCPYFQLMIAGSEVNLREDRSTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="33153" PGL_stop="33643"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33153" e_stop="33643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="33153" e_stop="33643" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATAATGGAGAGTGGAACCCCATGCAATCGCACCACCTTCGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTTACCTTGACCGGAATGAAATGAGTAGATTTATTTAATCTATCAACAATTACCCAAATGAAGTCATACTTACCCATTGTCATGGGAAGAGCAACCACGAAGTCCATCGCAATCCTTTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTCTGGTGTTCATACTTTATTTGTTGACAGTTTGGACATTTGGCAATAAAATCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGG</gDNA_template>
            <first_frame> T  Q  F  R  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  N  G  E  W  N  P  M  Q  S  H  H  L  R  D  V  K  F  G  *  L  L  C  I  V  S  Y  L  D  R  N  E  M  S  R  F  I  *  S  I  N  N  Y  P  N  E  V  I  L  T  H  C  H  G  K  S  N  H  E  V  H  R  N  P  F  P  L  P  F  R  N  G  H  S  L  K  C  S  S  G  P  L  V  F  I  L  Y  L  L  T  V  W  T  F  G  N  K  I  N  N  I  T  L  H  S  T  P  P  K  V  L  L  *  V  T  V  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  Q  N  S  V  D  Q  I  I  N  S   </first_frame>
            <second_frame>  P  N  S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  I  M  E  S  G  T  P  C  N  R  T  T  F  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  V  D  L  F  N  L  S  T  I  T  Q  M  K  S  Y  L  P  I  V  M  G  R  A  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  I  C  *  Q  F  G  H  L  A  I  K  S  T  I  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  L  I  K  S  S  T  R  </second_frame>
            <third_frame>   P  I  P  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  R  V  E  P  H  A  I  A  P  P  S  R  C  K  V  W  L  T  S  L  H  C  K  L  P  *  P  E  *  N  E  *  I  Y  L  I  Y  Q  Q  L  P  K  *  S  H  T  Y  P  L  S  W  E  E  Q  P  R  S  P  S  Q  S  F  P  T  S  I  Q  E  W  A  F  S  E  V  F  L  R  A  S  G  V  H  T  L  F  V  D  S  L  D  I  W  Q  *  N  Q  Q  Y  H  A  S  F  Y  S  T  K  S  V  A  L  G  H  G  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  E  P  L  S  E  *  C  *  S  N  H  Q  L  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33327" stop="33551"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SINNYPNEVILTHCHGKSNHEVHRNPFPLPFRNGHSLKCSSGPLVFILYLLTVWTFGNKINNITLHSTPPKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="34418" PGL_stop="35230"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34418" e_stop="35230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="34418" e_stop="35230" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34418" stop="35230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATCCCTTGAAAAATTGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTTTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCAATCCTTAGACACCACGTGCCCCAAGAATGACATTGAATCTAGCCAAAACTCACCCTTGGAGAATTTGGCATAAAGCTTTTTCTCTCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCTTACCTGGTCCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTGAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAGTGCGGGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCTTTCGTCTTCACAAACAGAACAGGAGCACCCCAAGAAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGCAACTCTTGCAGTTATGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATTGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTG</gDNA_template>
            <first_frame> R  I  P  *  K  I  D  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  N  P  *  T  P  R  A  P  R  M  T  L  N  L  A  K  T  H  P  W  R  I  W  H  K  A  F  S  L  S  T  F  P  I  P  F  S  N  A  P  H  V  L  S  C  S  L  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  L  T  W  S  E  K  Q  S  L  A  H  L  L  P  V  F  *  I  D  D  N  R  I  S  S  Q  S  *  K  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  W  D  I  C  S  *  *  L  P  C  S  T  V  C  S  L  C  T  S  E  N  S  H  L  S  S  S  Q  T  E  Q  E  H  P  K  K  M  H  L  V  *  *  S  L  C  L  A  T  L  A  V  M  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  L  G  E  Y  P  V  Q  D  Q  C  R  S  Q  Y  L  Y  P  V  A  Y  Q  E  G  L </first_frame>
            <second_frame>  E  S  L  E  K  L  T  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  F  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  H  H  V  P  Q  E  *  H  *  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  S  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  F  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  L  P  G  P  K  S  S  L  W  H  I  C  C  P  Y  F  E  L  M  I  T  G  S  Q  V  N  L  R  K  D  T  S  T  L  *  L  I  E  Q  V  I  S  A  G  N  G  I  F  V  L  N  S  Y  L  V  Q  L  S  V  V  Y  A  H  P  K  T  P  I  F  R  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  A  *  Q  L  L  Q  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  W  A  S  T  R  F  K  I  N  A  E  V  N  I  S  I  R  W  H  T  R  K  V   </second_frame>
            <third_frame>   N  P  L  K  N  *  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  F  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  Q  S  L  D  T  T  C  P  K  N  D  I  E  S  S  Q  N  S  P  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  L  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  V  R  G  M  G  Y  L  F  L  I  V  T  L  F  N  C  L  *  S  M  H  I  R  K  L  P  S  F  V  F  T  N  R  T  G  A  P  Q  E  D  A  L  G  L  I  K  P  L  L  S  N  S  C  S  Y  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  I  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34683" stop="34922"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEIQIWLKNPVHQAHESSRGIRKTKRHHYKFVMPLPGPKSSLWHICCPYFELMITGSQVNLRKDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34615" stop="34812"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYISISSINTITKRSKYGLKIPFIKLMKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="37098" PGL_stop="34547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37098" e_stop="36224"/>
            <exon e_start="35108" e_stop="34547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.913"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="37098" e_stop="36224" e_length="875"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36223" i_stop="35109" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="35108" e_stop="34547" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37098" stop="36224"/>
              <exon start="35108" stop="34547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37064" stop="36509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGCGGGAGGACGTCTTCTAGAGGAAGAGGACGAATGCCTGGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATTGGGAAAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCATAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGAAGGTACAACATGAGGCTATTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGAAAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTAAAACCTCCAGTCTTCAAGGTTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACAGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGTACACCGAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATAAGTTGCGCATCATTCTCTACCTTGTTTATGGAGAAGTATATCCCCTGGACTTTGAGTGATGGGAAAAGAGATGAATTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTTCATATGAGGCTAAGTTTCGTGCACTTTCCAGATATGCCACTCAGCTTTGTTTCAGTCCACAAGAGCGGATTCGCCATTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCCTACAGGTAGCGGCTACAGTGAAATCCTTTCAGGAAGTGGTAGACTTCGTGATAGAGGTGGAGGGAGTGAAGA : GCATAACTGCAAGAGTTGCTAAGCAAAGGCTTTATTAGACCAAGTGCATCTTCTTGGGGTGCTCCTGTTCTGTTTGTGAAGACGAAAGATGGGAGTTTTCGGATGTGCATAGACTACAGACAGTTGAACAAGGTAACTATTAAGAACAAATATCCCATTCCCCGCACTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTTTCTAAGATTGACTTGAGATCCGGTTATCATCAATTCAAAATACGGGCAACAGATGTGCCAAAGACTGCTTTTCGGACCAGGTAAGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCTTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCAAAGAGCAAGAAAGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGAGAGAAAAAGCTTTATGCCAAATTCTCCAAGGGTGAGTTTTGGCTAGATTCAATGTCATTCTTGGGGCACGTGGTGTCTA</gDNA_template>
            <first_frame> S  R  E  D  V  F  *  R  K  R  T  N  A  W  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  R  G  G  L  G  K  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  I  D  D  Q  S  G  S  C  L  S  *  W  V  I  *  S  R  P  D  T  S  S  V  F  C  T  S  T  S  G  S  E  G  T  T  *  G  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  E  K  *  S  A  *  T  F  Q  *  V  L  E  I  K  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  V  H  R  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  K  L  R  I  I  L  Y  L  V  Y  G  E  V  Y  P  L  D  F  E  *  W  E  K  R  *  I  L  E  P  R  A  R  *  D  V  G  Y  F  I  *  G  *  V  S  C  T  F  Q  I  C  H  S  A  L  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  V  A  D  F  S  P  T  G  S  G  Y  S  E  I  L  S  G  S  G  R  L  R  D  R  G  G  G  S  E  E :   H  N  C  K  S  C  *  A  K  A  L  L  D  Q  V  H  L  L  G  V  L  L  F  C  L  *  R  R  K  M  G  V  F  G  C  A  *  T  T  D  S  *  T  R  *  L  L  R  T  N  I  P  F  P  A  L  M  T  C  S  I  S  Y  K  V  L  V  S  F  L  R  L  T  *  D  P  V  I  I  N  S  K  Y  G  Q  Q  M  C  Q  R  L  L  F  G  P  G  K  G  I  T  N  L  *  *  C  L  L  V  L  R  M  P  L  L  L  S  *  A  *  *  T  G  F  L  S  H  I  W  I  S  L  *  S  Y  L  L  M  I  Y  *  Y  T  Q  R  A  R  K  N  M  R  S  I  *  E  W  Y  W  K  C  *  E  R  K  S  F  M  P  N  S  P  R  V  S  F  G  *  I  Q  C  H  S  W  G  T  W  C  L </first_frame>
            <second_frame>  R  G  R  T  S  S  R  G  R  G  R  M  P  G  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  D  W  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  *  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  K  V  Q  H  E  A  I  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  K  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  V  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  Q  F  G  V  E  F  V  T  Y  Q  F  Q  G  Y  T  E  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  I  S  C  A  S  F  S  T  L  F  M  E  K  Y  I  P  W  T  L  S  D  G  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  T  S  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  H  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  V  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K   : S  I  T  A  R  V  A  K  Q  R  L  Y  *  T  K  C  I  F  L  G  C  S  C  S  V  C  E  D  E  R  W  E  F  S  D  V  H  R  L  Q  T  V  E  Q  G  N  Y  *  E  Q  I  S  H  S  P  H  *  *  L  V  R  S  V  T  R  C  L  C  L  F  *  D  *  L  E  I  R  L  S  S  I  Q  N  T  G  N  R  C  A  K  D  C  F  S  D  Q  V  R  A  L  R  I  C  S  D  V  F  W  S  Y  E  C  P  C  C  F  H  E  L  D  E  R  D  F  *  A  I  F  G  S  L  C  D  R  I  Y  *  *  Y  T  D  I  L  K  E  Q  E  R  T  *  G  A  F  E  N  G  I  G  N  V  E  R  E  K  A  L  C  Q  I  L  Q  G  *  V  L  A  R  F  N  V  I  L  G  A  R  G  V   </second_frame>
            <third_frame>   A  G  G  R  L  L  E  E  E  D  E  C  L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  I  G  K  M  N  K  C  R  M  R  N  C  H  P  N  L  P  H  R  *  S  I  R  F  L  L  I  L  V  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  V  *  L  Q  G  L  *  *  K  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  L  L  N  L  R  M  P  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  S  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  V  A  H  H  S  L  P  C  L  W  R  S  I  S  P  G  L  *  V  M  G  K  E  M  N  S  *  A  *  S  K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  F  P  D  M  P  L  S  F  V  S  V  H  K  S  G  F  A  I  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  Q  *  N  P  F  R  K  W  *  T  S  *  *  R  W  R  E  *  R  :  A  *  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  S  W  G  A  P  V  L  F  V  K  T  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  I  P  R  T  D  D  L  F  D  Q  L  Q  G  A  C  V  F  S  K  I  D  L  R  S  G  Y  H  Q  F  K  I  R  A  T  D  V  P  K  T  A  F  R  T  R  *  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  A  P  A  A  F  M  S  L  M  N  G  I  F  K  P  Y  L  D  L  F  V  I  V  F  I  D  D  I  L  I  Y  S  K  S  K  K  E  H  E  E  H  L  R  M  V  L  E  M  L  R  E  K  K  L  Y  A  K  F  S  K  G  E  F  W  L  D  S  M  S  F  L  G  H  V  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36938" stop="36224"/>
                    <exon start="35108" stop="35071"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MINQVLAYLSGLSDQGQTPPVFSAPAPQVPKVQHEAIVAPRMDASLEIGTFPRLTTGPIMKNDQHELFSKFLKLKPPVFKVAESEDAYDFLVDCHELLHKMGIVEQFGVEFVTYQFQGYTEMWWRSHVECQPTEAPPISCASFSTLFMEKYIPWTLSDGKRDEFLSLEQGRMSVTSYEAKFRALSRYATQLCFSPQERIRHFVKGLRSELRISALQVAATVKSFQEVVDFVIEVEGVKSITARVAKQRLY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35102" stop="34818"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQELLSKGFIRPSASSWGAPVLFVKTKDGSFRMCIDYRQLNKVTIKNKYPIPRTDDLFDQLQGACVFSKIDLRSGYHQFKIRATDVPKTAFRTR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34817" stop="34548"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GHYEFVVMSFGLTNAPAAFMSLMNGIFKPYLDLFVIVFIDDILIYSKSKKEHEEHLRMVLEMLREKKLYAKFSKGEFWLDSMSFLGHVVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="35409" PGL_stop="35734"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35409" e_stop="35734"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="35409" e_stop="35734" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35409" stop="35734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGATTTTTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAGTCCAAAATCGCAAAATTCGAAGAAATCCAAGTCATAACCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAAACAAGACCTATATACTTTTTCGGCAATCACAGAATCACCCACCGGAGTAGAAACATGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATATGAAAATGTGGAGCAAGGATCAAATAATATAGAAGCCATGCAATCAC</gDNA_template>
            <first_frame> R  I  F  P  R  L  G  *  R  H  C  F  S  I  T  V  Q  N  R  K  I  R  R  N  P  S  H  N  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  I  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  F  F  G  N  H  R  I  T  H  R  S  R  N  M  N  R  Y  V  K  Q  F  T  M  *  I  K  T  I  S  K  *  G  R  Y  I  *  K  C  G  A  R  I  K  *  Y  R  S  H  A  I   </first_frame>
            <second_frame>  G  F  F  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  E  E  I  Q  V  I  T  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  K  Q  D  L  Y  T  F  S  A  I  T  E  S  P  T  G  V  E  T  *  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  E  E  D  T  Y  E  N  V  E  Q  G  S  N  N  I  E  A  M  Q  S  </second_frame>
            <third_frame>   D  F  S  Q  A  W  L  T  S  L  F  *  H  Y  S  P  K  S  Q  N  S  K  K  S  K  S  *  P  E  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  S  P  N  K  T  Y  I  L  F  R  Q  S  Q  N  H  P  P  E  *  K  H  E  *  V  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  I  H  M  K  M  W  S  K  D  Q  I  I  *  K  P  C  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0133O02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="58458" PGL_stop="49156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58458" e_stop="57936"/>
            <exon e_start="50886" e_stop="50776"/>
            <exon e_start="49659" e_stop="49655"/>
            <exon e_start="49196" e_stop="49156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.899"/>
          <exon-intron don_prob="0.000" acc_prob="0.246" e_score="0.937"/>
          <exon-intron don_prob="0.117" acc_prob="0.089" e_score="0.600"/>
          <exon-only e_score="0.512"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.899">
            <gDNA_exon_boundary e_start="58458" e_stop="57936" e_length="523"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="57935" i_stop="50887" i_length="7049"/>
          </intron>
          <exon e_serial="2" e_score="0.937">
            <gDNA_exon_boundary e_start="50886" e_stop="50776" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.246">
            <gDNA_intron_boundary i_start="50775" i_stop="49660" i_length="1116"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="49659" e_stop="49655" e_length="5"/>
          </exon>
          <intron i_serial="3" don_prob="0.117" acc_prob="0.089">
            <gDNA_intron_boundary i_start="49654" i_stop="49197" i_length="458"/>
          </intron>
          <exon e_serial="4" e_score="0.512">
            <gDNA_exon_boundary e_start="49196" e_stop="49156" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58458" stop="57936"/>
              <exon start="50886" stop="50776"/>
              <exon start="49659" stop="49655"/>
              <exon start="49196" stop="49156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593492" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAAAAACCATAACCTACCTCCACCGAAGACTAGTGATCAAGCAAGCAAATTCCCAAAGATTTGTTTCTCTTCGTTTCTCCTCTTTCTCGTTGGACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAAAACCCTCTTTCTTTTTCCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAGCTATATAATTAAAGCAGGAATAGTCAAAAACGTCCCTTAAAACAATTGAGGAATTCCGACTCAGACTGGGATTTACGCAGCCTGTGACGGCCCGTCGCGCCTGCGACGGTCCGTCTTGCTGCTCCGTCACAGAGTTCAGAGACTCAATTTGTCTGAAGAGTCTGTGACGGTCCGTCACACCT : GTGACGGTCCGTCCTTCCATTCCGTTACGAATTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAAACCCTGCGACGGTCCGTCGTGG : CAAGG : AAGTTCCTACTGAGCTACCAACGTTCATGATTGTTGTTCTC</gDNA_template>
            <first_frame> L  S  T  *  Q  G  L  Q  Y  Y  Q  Y  I  S  F  A  I  K  S  L  L  R  I  S  *  E  K  P  *  P  T  S  T  E  D  *  *  S  S  K  Q  I  P  K  D  L  F  L  F  V  S  P  L  S  R  W  T  F  S  L  F  L  L  F  F  L  F  S  L  F  K  T  L  F  L  F  P  *  L  A  Y  N  *  E  *  K  M  A  I  I  T  H  *  L  T  *  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  *  P  T  S  Y  I  I  K  A  G  I  V  K  N  V  P  *  N  N  *  G  I  P  T  Q  T  G  I  Y  A  A  C  D  G  P  S  R  L  R  R  S  V  L  L  L  R  H  R  V  Q  R  L  N  L  S  E  E  S  V  T  V  R  H  T   : C  D  G  P  S  F  H  S  V  T  N  F  R  E  S  I  F  S  T  Q  F  Q  I  F  *  V  F  *  N  E  T  L  R  R  S  V  V   : A  R  :  K  F  L  L  S  Y  Q  R  S  *  L  L  F   </first_frame>
            <second_frame>  *  A  H  S  R  V  Y  N  I  I  N  T  Y  H  S  L  L  R  V  Y  Y  E  Y  R  K  K  N  H  N  L  P  P  P  K  T  S  D  Q  A  S  K  F  P  K  I  C  F  S  S  F  L  L  F  L  V  G  L  S  L  S  F  S  C  S  F  Y  F  L  Y  S  K  P  S  F  F  F  P  N  *  H  I  I  K  N  K  R  W  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  A  I  *  L  K  Q  E  *  S  K  T  S  L  K  T  I  E  E  F  R  L  R  L  G  F  T  Q  P  V  T  A  R  R  A  C  D  G  P  S  C  C  S  V  T  E  F  R  D  S  I  C  L  K  S  L  *  R  S  V  T  P  :  V  T  V  R  P  S  I  P  L  R  I  S  E  S  R  F  S  V  P  N  F  R  F  S  K  C  F  E  T  K  P  C  D  G  P  S  W  :  Q  G :   S  S  Y  *  A  T  N  V  H  D  C  C  S  </second_frame>
            <third_frame>   K  H  I  A  G  F  T  I  L  S  I  H  I  I  R  Y  *  E  F  T  T  N  I  V  R  K  T  I  T  Y  L  H  R  R  L  V  I  K  Q  A  N  S  Q  R  F  V  S  L  R  F  S  S  F  S  L  D  F  L  S  L  S  L  V  L  S  I  F  F  I  Q  N  P  L  S  F  S  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  H  *  L  Y  N  *  S  R  N  S  Q  K  R  P  L  K  Q  L  R  N  S  D  S  D  W  D  L  R  S  L  *  R  P  V  A  P  A  T  V  R  L  A  A  P  S  Q  S  S  E  T  Q  F  V  *  R  V  C  D  G  P  S  H  L :   *  R  S  V  L  P  F  R  Y  E  F  Q  R  V  D  F  Q  Y  P  I  S  D  F  L  S  V  L  K  R  N  P  A  T  V  R  R  G :   K   : E  V  P  T  E  L  P  T  F  M  I  V  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58454" stop="58221"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHSRVYNIINTYHSLLRVYYEYRKKNHNLPPPKTSDQASKFPKICFSSFLLFLVGLSLSFSCSFYFLYSKPSFFFPN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58068" stop="57936"/>
                    <exon start="50886" stop="50813"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIPTQTGIYAACDGPSRLRRSVLLLRHRVQRLNLSEESVTVRHTCDGPSFHSVTNFRESIFSTQFQIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="52872" PGL_stop="54992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52872" e_stop="53719"/>
            <exon e_start="54464" e_stop="54992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.240" e_score="0.916"/>
          <exon-only e_score="0.888"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="52872" e_stop="53719" e_length="848"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.240">
            <gDNA_intron_boundary i_start="53720" i_stop="54463" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.888">
            <gDNA_exon_boundary e_start="54464" e_stop="54992" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52872" stop="53624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53519" stop="53719"/>
              <exon start="54464" stop="54992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAGCCCGTCTGATACTAAAGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGCGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCCCCTCAAGTTTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGGAGCCACTATGGCTTCTCGTATGGATGCCTCATTGGACATAGGCACATTTCCACGTCTGACTACTGGGCCTATAATTACAAATGATCAGCATGAACTTTTCAGTGAGTTCTTGAAATTTAAACCTCCAGTCTTCAAGGGTGCTGGATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTATTACTCAAGAAGTGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATAAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACTTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCTCGGACTTTGAGGGATAGGAAGAAGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAAATATGCCACTCAACTTTGTTTCAGTCCACAAGAGTGGATTCGTCATTTTGTGAAGGGGTTGAGGTAAGAGTTGCGGATTTCAGCCTTACAGGTAGCAGCTACGGCAAAATCCTTCCAAG : AAATGGATGATTTGGATGTAATCCTGGGTATGACTTGGCTTTCTTCGCAATTTTTGATTTTGGATTGTAATGCTAACACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTTGTGTGGGAGGGTTACTACACTTCCAATCCGGTGCGTATCATCTCCTTTATTCGTGCTAGGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTCCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAAGCCCAACTACAAGAGTTGTTGAGCAAAGGCTTCATTAGACAAACTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGAGAAGAAGAAGGATGAGAGTTTTCAGATGTGCATAGACTACCG</gDNA_template>
            <first_frame> P  W  *  R  S  W  E  D  V  L  *  R  K  R  T  S  T  *  P  V  *  Y  *  S  G  D  S  S  T  D  *  G  S  G  K  R  G  *  G  R  G  E  *  T  S  A  K  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  G  S  G  P  S  S  F  F  C  T  N  T  S  G  F  R  G  T  T  W  S  H  Y  G  F  S  Y  G  C  L  I  G  H  R  H  I  S  T  S  D  Y  W  A  Y  N  Y  K  *  S  A  *  T  F  Q  *  V  L  E  I  *  T  S  S  L  Q  G  C  W  I  *  G  C  L  R  F  S  G  *  L  S  *  A  I  T  Q  E  V  Y  S  R  T  V  W  C  *  V  C  D  L  *  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  S  D  F  E  G  *  E  E  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  T  R  V  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  S  Y  G  K  I  L  P  R :   N  G  *  F  G  C  N  P  G  Y  D  L  A  F  F  A  I  F  D  F  G  L  *  C  *  H  G  D  V  S  Q  A  W  D  R  S  V  C  V  G  G  L  L  H  F  Q  S  G  A  Y  H  L  L  Y  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  A  S  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  *  V  K  G  V  K  S  P  T  T  R  V  V  E  Q  R  L  H  *  T  N  C  I  S  L  G  C  S  G  F  V  *  E  E  E  G  *  E  F  S  D  V  H  R  L  P </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  K  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  A  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  Q  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  G  A  T  M  A  S  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  I  T  N  D  Q  H  E  L  F  S  E  F  L  K  F  K  P  P  V  F  K  G  A  G  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  L  K  K  C  I  V  E  R  F  G  V  E  F  V  T  Y  K  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  L  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  K  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  K  Y  A  T  Q  L  C  F  S  P  Q  E  W  I  R  H  F  V  K  G  L  R  *  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  D  D  L  D  V  I  L  G  M  T  W  L  S  S  Q  F  L  I  L  D  C  N  A  N  T  V  T  L  A  K  P  G  T  D  P  F  V  W  E  G  Y  Y  T  S  N  P  V  R  I  I  S  F  I  R  A  R  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  P  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  Q  T  A  S  P  W  G  A  P  V  L  F  E  K  K  K  D  E  S  F  Q  M  C  I  D  Y   </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  E  E  E  D  E  H  L  A  R  L  I  L  K  R  *  L  L  H  R  L  R  K  W  *  E  R  V  R  K  G  R  M  N  K  R  K  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  L  I  L  V  G  C  L  I  R  V  R  P  L  K  F  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  E  P  L  W  L  L  V  W  M  P  H  W  T  *  A  H  F  H  V  *  L  L  G  L  *  L  Q  M  I  S  M  N  F  S  V  S  S  *  N  L  N  L  Q  S  S  R  V  L  D  L  R  M  P  T  I  F  W  L  T  V  M  S  Y  Y  S  R  S  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  L  G  L  *  G  I  G  R  R  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  N  M  P  L  N  F  V  S  V  H  K  S  G  F  V  I  L  *  R  G  *  G  K  S  C  G  F  Q  P  Y  R  *  Q  L  R  Q  N  P  S  K  :  K  W  M  I  W  M  *  S  W  V  *  L  G  F  L  R  N  F  *  F  W  I  V  M  L  T  R  *  R  *  P  S  L  G  Q  I  R  L  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  L  F  V  L  G  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  C  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  K  P  N  Y  K  S  C  *  A  K  A  S  L  D  K  L  H  L  L  G  V  L  R  F  C  L  R  R  R  R  M  R  V  F  R  C  A  *  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52873" stop="53667"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRAPSPSDTKAVTPPPTEEVVREGEEGENEQAQNEELPPQPTPEMINQVLAYLSGLSDQGQAPQVFSAPTPPVSEVQHGATMASRMDASLDIGTFPRLTTGPIITNDQHELFSEFLKFKPPVFKGAGSEDAYDFLVDCHELLLKKCIVERFGVEFVTYKFQGNAKMWWRSHVECQPTEAPLMTWASFSSLFMEKYIPRTLRDRKKDEFLSLEQGRMSVNAYEAKFRALSKYATQLCFSPQEWIRHFVKGLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53668" stop="53719"/>
                    <exon start="54464" stop="54990"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELRISALQVAATAKSFQEMDDLDVILGMTWLSSQFLILDCNANTVTLAKPGTDPFVWEGYYTSNPVRIISFIRARKMVSKGCLAFLAHLKDDTTQVPPIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRQTASPWGAPVLFEKKKDESFQMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="63377" PGL_stop="69941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63377" e_stop="63567"/>
            <exon e_start="65027" e_stop="65035"/>
            <exon e_start="69820" e_stop="69941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.927" e_score="0.927"/>
          <exon-intron don_prob="0.261" acc_prob="0.000" e_score="0.444"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="63377" e_stop="63567" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="63568" i_stop="65026" i_length="1459"/>
          </intron>
          <exon e_serial="2" e_score="0.444">
            <gDNA_exon_boundary e_start="65027" e_stop="65035" e_length="9"/>
          </exon>
          <intron i_serial="2" don_prob="0.261" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65036" i_stop="69819" i_length="4784"/>
          </intron>
          <exon e_serial="3" e_score="0.918">
            <gDNA_exon_boundary e_start="69820" e_stop="69941" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63377" stop="63567"/>
              <exon start="65027" stop="65035"/>
              <exon start="69820" stop="69941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594001" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCACCCCCAACCGAACCTCCACAACTTCAACCTGCATAAACATCAACCCAATCTAACAACTCACAGTTTACATAGAACGTAACTCAACAAAAACATATAGACAAATTACAAATCCTCCACAACAACACTTTAACAAATTACATATCCTCGACACCAACACTTTAACAAATTATATATCCTCAATAACAA : CCGTCACAG : ACAAATTACATATCCTCCACAACAACACTTTAACAAATTACATATCCTCCACAATAACACTTTAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</gDNA_template>
            <first_frame> Y  H  P  Q  P  N  L  H  N  F  N  L  H  K  H  Q  P  N  L  T  T  H  S  L  H  R  T  *  L  N  K  N  I  *  T  N  Y  K  S  S  T  T  T  L  *  Q  I  T  Y  P  R  H  Q  H  F  N  K  L  Y  I  L  N  N  N :   R  H  R :   Q  I  T  Y  P  P  Q  Q  H  F  N  K  L  H  I  L  H  N  N  T  L  T  N  Y  I  S  S  I  T  S  S  V  F  N  N  H  K  F  R  K  </first_frame>
            <second_frame>  T  T  P  N  R  T  S  T  T  S  T  C  I  N  I  N  P  I  *  Q  L  T  V  Y  I  E  R  N  S  T  K  T  Y  R  Q  I  T  N  P  P  Q  Q  H  F  N  K  L  H  I  L  D  T  N  T  L  T  N  Y  I  S  S  I  T   : T  V  T   : D  K  L  H  I  L  H  N  N  T  L  T  N  Y  I  S  S  T  I  T  L  *  Q  I  I  Y  P  Q  *  Q  A  Q  Y  S  T  I  T  S  S  A  K </second_frame>
            <third_frame>   P  P  P  T  E  P  P  Q  L  Q  P  A  *  T  S  T  Q  S  N  N  S  Q  F  T  *  N  V  T  Q  Q  K  H  I  D  K  L  Q  I  L  H  N  N  T  L  T  N  Y  I  S  S  T  P  T  L  *  Q  I  I  Y  P  Q  *  Q  :  P  S  Q  :  T  N  Y  I  S  S  T  T  T  L  *  Q  I  T  Y  P  P  Q  *  H  F  N  K  L  Y  I  L  N  N  K  L  S  I  Q  Q  S  Q  V  P  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63435" stop="63567"/>
                    <exon start="65027" stop="65035"/>
                    <exon start="69820" stop="69884"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLTVYIERNSTKTYRQITNPPQQHFNKLHILDTNTLTNYISSITTVTDKLHILHNNTLTNYISSTITL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="77569" PGL_stop="77077"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77569" e_stop="77077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="77569" e_stop="77077" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77569" stop="77077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCAAATTCAGCATGCAATGTTCTCCAAAACATAGAAGTAAACTGCGTACCTCTATCTGATTGATGGATAGTGGAACCCCATGCAACCGAACGATTTCTGAGATATAGATCTTGGCTAACTTCTCTGCATTGTAAGTCACCTTTACCGGAATGAAATGAGCAGATTTAGTTAACCTATCAACAATCACCCAGATAGAATCATACTTACCCATCATCTTTGGAACACCAACCACGAAGTCCATTGCGATTCTCTCCCATTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTAACAGTTTGGTCATTTGGCAATAAAATCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTTCATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTTGATCAAATCATCGATGCGGGGT</gDNA_template>
            <first_frame> T  K  F  S  M  Q  C  S  P  K  H  R  S  K  L  R  T  S  I  *  L  M  D  S  G  T  P  C  N  R  T  I  S  E  I  *  I  L  A  N  F  S  A  L  *  V  T  F  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  I  E  S  Y  L  P  I  I  F  G  T  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  L  A  I  K  S  T  I  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  F  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  F  D  Q  I  I  D  A  G  </first_frame>
            <second_frame>  P  N  S  A  C  N  V  L  Q  N  I  E  V  N  C  V  P  L  S  D  *  W  I  V  E  P  H  A  T  E  R  F  L  R  Y  R  S  W  L  T  S  L  H  C  K  S  P  L  P  E  *  N  E  Q  I  *  L  T  Y  Q  Q  S  P  R  *  N  H  T  Y  P  S  S  L  E  H  Q  P  R  S  P  L  R  F  S  P  I  S  I  Q  E  W  A  F  S  E  V  F  L  R  A  F  G  V  H  T  L  L  V  N  S  L  V  I  W  Q  *  N  Q  Q  Y  H  A  S  F  Y  S  T  K  S  V  A  L  G  H  G  S  S  W  L  H  P  D  V  S  N  T  L  N  Y  E  P  L  S  E  *  C  L  I  K  S  S  M  R  G </second_frame>
            <third_frame>   Q  I  Q  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  D  G  *  W  N  P  M  Q  P  N  D  F  *  D  I  D  L  G  *  L  L  C  I  V  S  H  L  Y  R  N  E  M  S  R  F  S  *  P  I  N  N  H  P  D  R  I  I  L  T  H  H  L  W  N  T  N  H  E  V  H  C  D  S  L  P  F  P  F  R  N  G  H  S  L  K  C  S  S  G  P  L  V  F  I  L  Y  L  L  T  V  W  S  F  G  N  K  I  N  N  I  T  L  H  S  T  P  P  K  V  L  L  *  V  T  V  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  Q  N  S  V  *  S  N  H  R  C  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77396" stop="77172"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNHPDRIILTHHLWNTNHEVHCDSLPFPFRNGHSLKCSSGPLVFILYLLTVWSFGNKINNITLHSTPPKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="146750" PGL_stop="147075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146750" e_stop="147075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="146750" e_stop="147075" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146750" stop="147075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGATCTGTCCCAGGTTTGGTTAACGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAACCAATTCATACCCAGAATTACATCGAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCAAAAACGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACTGGAGTAGAAACACAAATAGGCATGCCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAAGAAGATACATATGAAAATGTGGATCAAGGATCAAATAATACGGAAGCCATGCAATCGC</gDNA_template>
            <first_frame> R  I  C  P  R  F  G  *  R  H  S  F  S  I  T  I  *  D  C  K  V  W  R  K  P  I  H  T  Q  N  Y  I  E  I  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  Q  K  R  Y  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  W  S  R  N  T  N  R  H  A  K  Q  F  T  M  *  I  K  T  S  S  K  *  R  R  Y  I  *  K  C  G  S  R  I  K  *  Y  G  S  H  A  I   </first_frame>
            <second_frame>  G  S  V  P  G  L  V  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  N  Q  F  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  K  N  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  Q  I  G  M  P  S  N  S  Q  C  K  L  R  P  V  A  N  E  E  D  T  Y  E  N  V  D  Q  G  S  N  N  T  E  A  M  Q  S  </second_frame>
            <third_frame>   D  L  S  Q  V  W  L  T  S  Q  F  *  H  Y  N  L  R  L  Q  S  L  E  K  T  N  S  Y  P  E  L  H  R  N  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  K  T  L  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  L  E  *  K  H  K  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  Q  M  K  K  I  H  M  K  M  W  I  K  D  Q  I  I  R  K  P  C  N  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0133O02.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146883" stop="147074"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPKNVTRQDLYTFSTITDSPTGVETQIGMPSNSQCKLRPVANEEDTYENVDQGSNNTEAMQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 135 chains have been computed
$ 
$ memory statistics:
$ 304376 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 14494 bytes was the average size of a spliced alignment
$ 24632 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1448 bytes was the average size of a predicted gene location
$ 9 megabytes was the average size of the backtrace matrix
$ 174 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:27:16
-->
