<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 13:46:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291117" ref_strand="+" ref_description="SGN-E291117 [cLET-8-B17]">
      <seq>ctattaatcacaagacgacgtgctaagtatcaaaacatcttgtcaagaaaacgtttgtcttctagcctctctataaaagtagatggcgttaaaagtttcaccttcagagaaatggcttcggccactaacaactttgatacctcaactcaagttggtgaaggaggatatggttccgtctttaggggaatcttagctgacaaaacaattgttgctatcaagcgagcaaaagtaggatccctgcaggggcagaaggaattcttgactgaaatagaactattatcaacgttacatcaccgtaatctagttgtgttgcttggatactgtgacgaagaacgtgagcagatgctgatttatgagttcatgcccaacggaactttgcgtgactggctttctgccgaatgtcaaaaaaaattgaagtttggagcaaggttggggattgcactgggggcatctaagggcatcctttacctccatactgaagctgatccacccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0012M01.2" temp_strand="+" temp_description="C00HBa0012M01.2  CU915724.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0012M01 sequenced_by:sanger upload_account_name:uk">
        <position start="32835" stop="34688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33135" g_stop="33192" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33193" i_stop="33290" i_length="98">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33291" g_stop="33574" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="342" r_length="284" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33575" i_stop="33824" i_length="250">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33825" g_stop="33876" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="394" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33877" i_stop="34286" i_length="410">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34287" g_stop="34388" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="496" r_length="102" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0012M01.2" gen_strand="+" ref_id="SGN-E291117" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0012M01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33135" e_stop="33192"/>
          <exon e_start="33291" e_stop="33574"/>
          <exon e_start="33825" e_stop="33876"/>
          <exon e_start="34287" e_stop="34388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTAATCACAAGACGACGTGCTAAGTATCAAAACATCTTGTCAAGAAAACGTTTGTGTAAGTTCTCTTATTAAATTAGCTACAATTTTACTTAATAAAGTCTGCTATTTTTAATTCATTCTGCGAAATTGATGAATATGGGTTTTGGTTTGCAGCTTCTAGCCTCTCTATAAAAGTAGATGGCGTTAAAAGTTTCACCTTCAGAGAAATGGCTTCGGCCACTAACAACTTTGATACCTCAACTCAAGTTGGTGAAGGAGGATATGGTTCCGTCTTTAGGGGAATCTTAGCTGACAAAACAATTGTTGCTATCAAGCGAGCAAAAGTAGGATCCCTGCAGGGGCAGAAGGAATTCTTGACTGAAATAGAACTATTATCAAGGTTACATCACCGTAATCTAGTTGTGTTGCTTGGATACTGTGACGAAGAAGGTGAGCAGGTATGATAAGACCTGAAAACCTTTTCAATTACAACTGTTTTTATTAGTTACTAGTAATTCACATTCATCACTTTCATGTTTCTTTAGTGTACCATCATAAACCTTAATGTATTCTTTCTCACTTCAGTTGCTAATGATCAAACTGAATCTCTAGCAGACTAAATGCTTTCTTTAGCTACTGAAGTCTTCTTGTTTCGCACAAAGAGTGATATAGTCAAAGCAATTATGAGTCTTCTGTATACATTTGCAGATGCTGATTTATGAGTTCATGCCCAATGGAACTTTGCGTGACTGGCTTTCTGGTAAGAACTGTTTCCTAGTTGTTTCTAGCTTTCATATGATAAATCCTCCTCAATTTCTTTCTTTTCGTTTAGTAGTGAAGATCCAATGCTGAGTTGCAATATTTATAGATGATCCTTGCACATGTTGTGACATTAGTTCTTCTATGGTGAATTGATAATACACGCTTCAATATTTTATTGTGTTTGTGGAGAAACCATTGTCAAGGTGGTGAACGATCTAAAAAATGCATAATGAAAAAGTTATCGTAGGAAATCTAATAGTCAAAGAAACATAGATTCCATCTTCTTTTTCCTTATCAGAATAAGAAAAGTTGTTAGTTTCTTTATGCGACTGTGATAAACTTAAAATTGACATCGGTCAAGAAACTTTTGTATTGCTATCTAAGTAGGTGATTTCCATCATTTGACAGCCAAATGTAAAAAAAAATTGAAGTTTGGAGCAAGGTTGGGGATCGCACTGGGGGCATCTAAGGGCATCCTTTACCTCCATACTGAAGCTGATCCACCCATAT</genome_strand>
        <mrna_strand>CTATTAATCACAAGACGACGTGCTAAGTATCAAAACATCTTGTCAAGAAAACGTTTGT..................................................................................................CTTCTAGCCTCTCTATAAAAGTAGATGGCGTTAAAAGTTTCACCTTCAGAGAAATGGCTTCGGCCACTAACAACTTTGATACCTCAACTCAAGTTGGTGAAGGAGGATATGGTTCCGTCTTTAGGGGAATCTTAGCTGACAAAACAATTGTTGCTATCAAGCGAGCAAAAGTAGGATCCCTGCAGGGGCAGAAGGAATTCTTGACTGAAATAGAACTATTATCAACGTTACATCACCGTAATCTAGTTGTGTTGCTTGGATACTGTGACGAAGAACGTGAGCAG..........................................................................................................................................................................................................................................................ATGCTGATTTATGAGTTCATGCCCAACGGAACTTTGCGTGACTGGCTTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCGAATGTCAAAAAAAATTGAAGTTTGGAGCAAGGTTGGGGATTGCACTGGGGGCATCTAAGGGCATCCTTTACCTCCATACTGAAGCTGATCCACCCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577366" ref_strand="+" ref_description="SGN-E577366 [35090]">
      <seq>taagaacatgggatcttacccctccgaatgtgcggagaagatggtggagttggccctgaagtgttgccaggacaaaccagaagacagaccctcaatgctggaggtggttaggacgctagaaaccatactccaaatgatgccatataccgacaccgatcctttggataataaagccagtttcagtgaaactacatcatcagcttcattttctaatactagaagtggagacctatttatatcatcatccaatgtatcaggtggtgatcttattagtggtgttactcttaatattacacctcgttaacattagcttgtcttccactgcataaacattggcttgtacactatgactagtaggaagtctatacgacttgtcttttatgttgtatacgagtgtacaataataccatcttactgcttctagatttatgtatattcctcaagaatctgttgtgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0012M01.2" temp_strand="+" temp_description="C00HBa0012M01.2  CU915724.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0012M01 sequenced_by:sanger upload_account_name:uk">
        <position start="34602" stop="35636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34901" g_stop="35334" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0012M01.2" gen_strand="+" ref_id="SGN-E577366" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0012M01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34901" e_stop="35334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGCATGGGATCTTACCCCTCCGAATGTGCAGAGAGGTTGATGGAGTTGGCCCTAAAGTGTTGCCAGGACAAACCAGAAGACAGACCCTCAATGCTGGAGGTGGTTAGGACGCTAGAAACCACAGTCCAAATGATGCCATATACTGATACCGATCCTTTGGATAATAAAGCCAGTTTCAGTGAAAGTACATCATCAGCTTCCTTTTCTAATACTAGAAGCGGAGATCTATTTATGTCATCATCCAATGTATCAGGTGGTGATCTTATTAGTGGTGTTACCCTTAATATTACACCTCGTTAATATTAGCTTATCTTCGACTGCATAAACATTGGCTTGTACACTATGACTAGTAGAGAGTCTATACGATTTGTCTTTTATGTTGTGTACTTGTATACAATAATACCATCTTACTGCTTCTAGATTTATGTAT</genome_strand>
        <mrna_strand>TAAGAACATGGGATCTTACCCCTCCGAATGTGCGGAGAAGATGGTGGAGTTGGCCCTGAAGTGTTGCCAGGACAAACCAGAAGACAGACCCTCAATGCTGGAGGTGGTTAGGACGCTAGAAACCATACTCCAAATGATGCCATATACCGACACCGATCCTTTGGATAATAAAGCCAGTTTCAGTGAAACTACATCATCAGCTTCATTTTCTAATACTAGAAGTGGAGACCTATTTATATCATCATCCAATGTATCAGGTGGTGATCTTATTAGTGGTGTTACTCTTAATATTACACCTCGTTAACATTAGCTTGTCTTCCACTGCATAAACATTGGCTTGTACACTATGACTAGTAGGAAGTCTATACGACTTGTCTTTTATGTTGTATACGAGTGTACAATAATACCATCTTACTGCTTCTAGATTTATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688288" ref_strand="-" ref_description="SGN-E688288 [t3_tus_11_l02]">
      <seq>ggaacgaagaccctcgtcggaccgtgtgcctacgacggtccgtcatacatgccgtcgagggtaatgaagagagcagcaaaagaaattgcataagtatgggacaacggagtccatgacggtctgtcgtgaccacgacgatccgtcgtgaggtccgtcgacccagccgcgttttggcagatttccagcaaatatagtccttgtttaattaggtttttattttctataaatagttctaaaaacatcatttttgaggtaagactctggatcattgttagactccgtattgttagacatcgtataagaaaacattttattgttagacttttgattatcattaattgttggtgattttttgtgataaatcaagaaaactctcagattttactctttctctttgaattaagtacatgaattcttatatgatatatttgaatattgtgattatgactatggttaactaaactccataactaggattgtgggaaccataggagaatattgaggtaaaacctaactaaaataacaattctagaatagtgtcttgcatgtattaataattctttggctcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0012M01.2" temp_strand="-" temp_description="C00HBa0012M01.2  CU915724.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0012M01 sequenced_by:sanger upload_account_name:uk">
        <position start="51375" stop="40551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51075" g_stop="50822" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50821" i_stop="41172" i_length="9650">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41171" g_stop="40851" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="573" r_length="321" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0012M01.2" gen_strand="-" ref_id="SGN-E688288" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0012M01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688288" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51075" e_stop="50822"/>
          <exon e_start="41171" e_stop="40851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACGAAGACCCTCGACAGACCGTTGTGCCTATGACGGTCCGTCAAACTTGCCGTCGAGGGTAATGAAGAAGAGAAGCATAAGAAATTGAACAACTTTGGGACGATGGAGTCCATGACGGTCCGTCATGACCATGACGATCCGTCGCGAGGTCCGTCGACCCAGCCGCATTTTGGCAGACTTCCAGCAAATAGAGTACTTGTTTAATTAGGTTTTTATTTTTTATAAATAGTTCGAAAAACCACGTTTTTGAGGTTCGACTCTTAGACTTTCAGACTCTGGATCATTGTTAGACTCCGTATTATTAGACACCGTATTAGTAAACATTGTATTGTTAGACTTTAGATTATCATTGATTGTTGGTGATTTTCGGTGATTAATCAACCAAACTCTCGAATTTTACTCTTTCTCATTGAATTAAGTACATGAATTTTCTTATTCAATATATTTGAATATTGTGATTATGACTATGAGTAACTAAACTCCATAACTAGGGTTGTGGGAACCATAGGCAAATAATGAGATAAAACCCAACTAAAATAACAATTCTAGAATAGTGTCTTGAATGTATTAATAATTCTTTCGCTTAGAAGTCTTTTTAACGGATGGCCAACGTTAGAAGTCGCCTTAATGCTACTTGCCGGACAAAGGAGGTAGATAATAGGAACCAAATTATTAACATAGATTTAGTGTATACTATCTAATAGGCTAGTAATAATTGGTACGAGGTAATAACTTAGTCAAATATTGAATACGATGCTTAATATGAGGTAAAGATAAGGGTTAGTAAAGCAACACACATAGCCGGACCAAGGTGCGGAGTGAGATTTTCTAGATGCCCGACTAAGGATTTAGAAATACGTAACTTGTCACTTTGTATGCAAGATACTAGGAAAGAATTGTTATAGTTAGAATTATCAAGTTATGAACCTGTAGGGAACACGTAAACCCTAGTTACTTTGATTAATTGATTAAAAATCCAACTTTCAAAGCTGTTAAGTGTCTCTTTTAATTTTGTTAGTTATTTTTACTCATTTAGAAATAGAAACCCCCCTTTTTATTGTTTTACTTTCCAAGGAAGTCATTGACCAAACAATAGTAATAACAGGTTGAAGTTAAGTCTAGACTATTTTCCTCGTGGGAACGATCCCAAACTCACTAGTTGGGTTATTTACTTGACACGACCGCTTTACTTCTTATTTGAGAAGTAAGTTTGAGCGTATCAAATTTTGGCGTCGTTGCCGGGGATTACAACTTTTAGATTAACTTGAACTTATTACTATAGTTTAGTTGATATTTTCTTTATTTTACTTTGTTTTATTGTTTTTGATTTTTTTTAGACTATCCTCCTTGTATGCCAAATACACGGAGAGAAAGAGAACCCATGTTTCCCCACGATCACGAGTTAGAGCGTACACTATGAAATATGAATCGAAACTTGGGAATAAATGATGATGATCTGAACTAGAACATCCCAGCTCCGGTTGATGTTCATGGTCATATGTTACCCGATGCTCCGGGTGAACACCAACAGAGGGGACAAAATCCCATTCCACGGCCCCAAGCATACTACAGAGGCTATGATAACATAGCAGACTCGGATGGGCCACTTGTCTTGCCTCCTCTACCCACAAGACACACCTTTGTGGTAACTAGTAGCCTGATGCAAATGCTCACTGCCAGAGGTTTGTTTTTAGGGCTACCTTCTAAGGATCCACATTACTATATAGCTAAGGTAAGGGCAGTGTGTAAAATCTGTGTAGGGAGGCCTGATTTGGATTTAGATGTAATAGGTCTCAGAGTGTTTCCTCTCTCACTGGCGGGAGAGGCTGCTATGTGGTTCACTGAGCTCCCATACAACTCAATCTTCACTTGTAACCAACTAAGGGATGTCTTCTTAGAACGCTACGATCTGGTCTCAATGAAACTAAACCACAAAGACAGAGTGAATAACTTTGTAGCACTACCGGGAGAGTCGGTTAGTAGTTCTTGGGATAGATTCACCTCATTCTTGAGAAGTTTTCCAAATCACCGTATAGATGATGAGTCACTAAAGGAATACTTCTATCGGGGACAGGATGATAACAATAAAGCGGTGTTGGACACTATAGCAGGTGGATCTTATGGGGAGTGTCCTTATGCTGAGATCACTGAAAAATTAGAGAAAATCTCCCGGAATAACAAAGCTTGGAGTACTAGGAAGTCTGATACAGAGAGAAACACATTCGTAGTGCAGTCCACTCACAACCCAGCAACAGATGAGATTCGTGAAGAAATGGCTCAGATGAGAACCGAGCATGGGTTGGTACTAAAACATGACACTGGGGGTGCAGAAAAGATAAATGCAGTCAACTACTTGGATAAACCACTACCTACTAATGATGAATGCTATTATGCGCTGGACACTTATGCAGTAAACGAGCAGACGGGGGGTTTCCGACCAAGCGCCCAAGGCTCAAATCAGGATAACTGGCGCCAAGGTCGGAACTATGGTAACTACAACTGTGAGGGTCATTATGTCCGAGATGGAAAATACAACCGCGACAACAACTTTAACAGGTGTAACTATGCTAATAAAAACGACAGGAATGGGCCCTATGTCCCTCCTCAAAATCGTGTAGTTACTCCTAGGGATGGTGGAGATAGTATAGAGCGAGTTGAGGATATGTTGCACAAAATGATGAGGAGATTCGATGCTAGTGATGAGCACATTAAAGAGTTGAGGTGTGATTTAGCTAGTATTGGGCAAAAAGTTTATACACATGCAATTTCGATTAAGAAGATCGAGTTGCAAATGGCGCAATTATCTACGACAGTGAACACATGGCAACCGGGCACTCTTCCTAGCAACACTTTCCAAAATCCAAAGAATGATGCGCATTGTATGGAAATCACTACTCGGGGTGGTAAGCAAACCATTGACCCACCTATGACGTCTACTGAGGAAAATGTGAGAAAGGATAATGATAATGTGGTAAAGGGTAGTGGTGAAGCAGAGGAAAGTAATGGAAAAGATGCAGAAGTACCTATGAGGTTAATTCCCATGCCTAGGCCACCACCACCTTTCCCTCAGAGATTAGTGAAAAAGACCGATGATAGTAAATACCGTCATTTCATAACAATGTTGAAGCAGCTTTCAATCAATGTCCCTTTGGTAGAACTCTAGAACAAATGCCCGGTTATGCCAAATTTATGAAAGATCTGGTCACCAAGAAAAGATCGGTCACTTTTGAGGATGATGATAGACTACAACATTGTAGTGCTATTGCTACAAGATCCCTCGTACAAAAGAAAGAAGATCCGGATGCGTTCACTATTCCTTGTACAGTAGGGTCATTACATTTTGTGAAAGCATTATATAATCTGGGGGCAAGCATAAATCTCATGCCCCTCTCAATTTACAAGAAGTTGGGTTTGGGGGATCCAAAACCCACTGCGATGCGGCTACTGATGGCTGATCGGACAGTGAAACGGCCTATAGGGATACTCCATGATGTGCTAGTAAAAGTAGAGTCATTCATCTTTCTGGCTAATTTTGTTATTCTTGATTGTGAGGTCGATTGTGAACTGCCTATTATTCTTGGGAGGACATTCCTTGCTACAGTTAGAGCCTTAGTTGATATGGAGAAGGGGCAGATGAAATTTTGGTTGAACAATGAAGAAGCGACCTTCAACGTTTGTAGGACCATGAGGCAGAGTGGTGAGCTCCAATCGGTATCAGCCATATCCCACAAAGAAAAGATGAAGAAAAAGAATGAAGAAAAAAGTGCAAAACAAGAGTTTATGGCTGGGGATTTGGTGCTTGTAGACAGTTCTGGGGTGCCTTGTCTTCCGAGAAAGCTCAAGTCCAAATGGACTGGCCCTTACTTGATTACCCAAGTATTCCCTCATGGAACAGTTGAGTTAAAAGCCAAGGAGGAAGTGCGGTTTGAGGTTAATAGAGAACGAACAAAACTCTATTTTGGGCATAAAGCATCGGGGAATAAAGTAAAAGAGGCAAACCATCTTGATGAAGGCTGAGTAATCAAGTGTCCCCGGTCGTGCCACGACATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATAGTCTTTTTAGTAATGGTAGCATTTTTCTACTAATGGGTTTTTAAATTTGCAGGCACATCACCAGGAAATTCTGTAGAAAATTACTCTGCAGCAGCCACTGACGGATACATCGACGGACCATTGCGCCTGCGACGGACCGTCGTATGCCTCCTACATACCACGTACATTTTCCTGTTATTTTCAAACTAGGGCACACACGACGGACCCAATGACGGTTCGTCACAACTGAGACGGACCGTCGTCGGGGAGTCATTGAGTCATTAATGAGTCGTACCCGACCCGACCCGGCTAGAGTCTTTTTCAAAATCAGACCGTTTAAACCCCCCCCCCCAACCCCTCAGTTCACCCCATTCCTTCATTTTACCTCCCATTTCCCTCTCTTTTCAACTTCCACATTCTCTCCCTCGATCATTGTTCCCCCAAAATTCTCCAAAGCCCTAGAAGTTATCATTTACTAGTCGTAGTTGCTGCTTTGGGTGTTTTCTTGGTCACCGAGTACTTTCCCATATTGTTTTTCTCCAATTCTAAGGTATGTGTCTCTAATTTATACTCATTTATCTTGCATTTTTGTTTATTAATTAGTATTAGCTTAGTTCTTCGTCATATGTTCGTTTCTTGTATATAAGATTCTGTCTAACCTAGGTTAAAATGTTGGAAATTGCCATGTTTACAACCCTAGACATAGGTGCTTTCACATTACTAGTTTCCTAGGTAGTTGGGTTAGACAAATGTAGGTCCAAAACACTACAAGTCGGGGATGCATGGGGTACCCCCAGCTCTATCACTGATCTACAGAACAAGACCTTGATGAAGGACCGTCTTGCCCACGACGGACCATCATAGGGTCCGTTCCAAAAGCCCTAACACCCCATTGTCCATCTTTTTAGTGTCCTTCAACGGACACATTTGATGGACCGTCATACCCACGACGGTCCATCCTGCACAACCCTTCTGGTTGTCAGAGACCCTGTTTCTAAGGGTCTCTCATTTTTTTTCTAAGTGTCCCCCAACGGACACATGTGACGGAACCGTTCTGGTTGTCAGAGACCCTGTTTCTAAGGGTCTCTCACTTTTTCTAAGTGTCCTTCAATGGACACATGTGACGGACGGTCATGCCCACAACGGTCTGTCCTGCATGACCGTCATGAGGGTCAGTGACCCCTCTCCTAAGGGTCTCCATAATTTTTTCCAAGTGTCCTACGACCGACACCTACGACGGACCGTTGTACCTGTGACGGTCCGTCCTGCACATACCGTCATACTAGTTAGAGACTCTCCTTCAGGGTTCTCCATATATACATAGTCTAAGTAATACACGACGGACCCCATGACGGTCTGTCATAGCCACGACGAGTCGTCACCAGGCTCGTCATGTGTCACTGTTACCATAGAAATGACATACAATTTTAATTTTTTGGGTACTTCTTACTTGTCTTGTTTGCCACTACTCGTACTAATATTGATCCTTTACAGGTACTATCTACTATGAAACCCAAGAAAGATCAAATCTATGCACGCGGGCGATCGAAGTCTGTCGCCCCGTCTACCCACATGGTCATTGGCTTTGATGATGAGCGTGACCCCAAGTATGTGCCCCCAGGCACTTCCACCCCTTCCAGTGCTGCACGTGCTCCCAGAGCCACACCCAAAAAGGTGGCGTCCAGCGTAGTCACTGCCTCCAAGTCTGATGAAGAGCGCACACAGACCGGCACACCCTCTGAGTCAGCAACAAATGAAGAAGGAGTGTCTGCCTTCTTAGGAGTATCTTGGTCGGAGGAAGCCTCCGGCTCTGCTGAGGTTCCCGCACCCGCCACCGCTGCAGCGTCGGCCTCATCTGATGAGGCTGACAGTTTTGAATCCACATCAGGCTCACCAGCTCAGGTCCCCACCCCATCCACTGACCAGCCCAACCGATGGTGTGTCGACGGGCAATTTCAAGTCTATTCCGATGCCAAGTTCCTGATTGATAATGGATTAATGACTCGAACACTCACCTTGGAGCGGCGGGTCCTTACAGGGAGTCTCCCGATGATACCTGAGATCCACAATGTGTTCACCAGACATCGCTTGGAGTGGACAGCATGTGCGTTGGGACGTTACAGTGAATAAATGGTTCGAGACGCATCCTACGTAGCGACTCTCCGATCAAAGATAGATGGCGGGCTGCCCGCGCTAAACAGGCTCCACTGGAGCAGGTCCGAGTACAGGGCGTACAGGTTGACATTTCCCTGCCTGCATCCGCCGGTTTCTATACGGCGAGGGTGTTTATGCTACTCGGACCCCTCTCACTGCCGAGTTTGAATACCGCTGGAAGATAGTGAAAGATGGCCAGTTCCTGCGTGATCCATCACTGAGAGAGACCACCACAAGGTGGATGGCCCTGCACCTGTCAGTTGATGGAGAGGGTGCCGACTGGGTGACTGAGCCAAAGGGGGCCATCAAGAAGGCCAACCTCACTTTCACGGCGAAGTTCTTGTGGTTGCTTGTCCATCATTGCCTTTCCCCCAGAGCTGCTGATAGTATCGTTACATGGGATCGAGCAGTGTTGATGGCGGCGATGATAGCTGGGTTCGAGGTGGACTTCGCGTGGCTTCTACAGAAAGTCATGCACGAGAGGGCATTCAAGGTCACTACTACTTACCCTTTCCCGTGCATGATCTTTGCTCTCTGCAGGTCCGCAGGTGTGCCTTTATGGCACGTAGATCAGCTCAAGACCCCGCAGGGCACTGTTGACGTCGGCCTCATTAGAGATGAGGCCAATGAGTTGGCTCCACGCAGAGGGCCCTGTCCAGAGCTTCCCCCACTTGCTGATGATCTTGATGATACGGTAGCCCAGGCCCGCACGGCTACACAGGCGGCGTCCACTGACACTACCCCGGTCGAGTCTATCCCGGTTAGTAGCCATGATCCGAGCTATTCTCGCACAGCCCCTCTACCAGCACTGGTCCAGCTTTCTAGAGTCCAAAAATTAGAGGCGCAGATGTCTACACTTTTGCATCATATCCAGCCGTGGATGCAAAAGTCTATTACTGAGTCAGAAGAGCGCCTAGAGTGAAAAATGGTCCAGTTTACAGGGCGGAAGATTTCTGAGGTTCACCGGCACTTGGACGCCTTTGAGTTGAGGGTGCTAGCTCGGCCAGCCCCTCTAGTGGATGTGTTGAATCTTCAGGATGCGGTCGATAGCCTTCACACAGATATTGACACGATCTTAGAGGCTAGGGTGCCGGAGTCTGAGGCCCCTTCTGTCGATCCTGCTGAAGACACAGTGTTGGCGGCCCTATTTGCCACTTCAGAGATTCCACCACCTCCCCCTCGAGAGCATGCCAAGAGGCGTAGGGGCCGAGCAGAGGATGAGGCGTGAGCACAGAAGAAGGAGCACCGAGAGATGGAGGCTGCGAGGAGAGCCTCACTTGCTGAGGAGGAGGCGCACCAGATGAGAGCATCAGAGTTAGCGGCTGGGGCATCTAGCTCCCGAACTGTGGAGATAGCAGGAGGCACTACTGATAGTGCGGTTGTGGCTGAGGACAACAGTGAGGGTATCCAGATTGCAGAGGACGTGGGTTCCGGGGAATTGGACTCACCAGCTTGCTGATTGACGGCGCTTTGCGCTACAGGTTTGCTTCACCTACAACTCTAGTATTTAACTTTTTATGCATTGGGGACAATTTCATGTTTTTTGGTTGGGGGTGGGGTAAATGGAAAGTGAGTGTTAGGGTGAAGTCTGAGTAGCCCAATTCACTATCCTCTTTTGGGGTTTTCTTGCCTGTGTTCTTTTTCCCCAAAAGACTGATTACTTTTTCTGTTGAACCGGCATGTTTATATTTTTTGTACATTGTTTAATTCTGGAGCATGATGGTTAAAATGATATAATGATAAACTGGAAAATGATGCATGACTAGGCATAGTAACTTATAATTATGTAGCTCTAAGCGTGACATAGAGTTACACTATTGCATTACCCTAAGTCTTAAATTCGAACTAGGTGTATGATAATCTGGTATAGTGATGAGATGTCAAGTGAGTGTGTGGAAAATTCGAATAAGTCCACTATTGGTACTGAGCTAGAACTTGCCTGGTTAGTCCTGCTAAAAGTAAGCTGTAATAGAAAATTGGGAAAGGATCATAGGCCTTTATTCAATATAGCCCAGCTTTAGCCTAAATAGAAAAAAACCAAATGAAATTTATCCTTCTTTGATCCAAATCATCTGAGCATAAAATAGACCTTTCTTTTTCACCCCCAACTTATCTTTTCTAGGAACAATGTGTTGGCCCTGGTCCCTCCTTAGACATGTGCACCTTAGCTTATGCCAAAAGCATAAGTTGAGGGTGGCTAATGCAGTAAACAACCTTCGTTATGGCCCTGACCCAACTTTGGGTATTGTGTACCTTGACTCATGGCAAAGCCATGAGTTGAGGGTGGCTATTATGAGGAATGCTCTGGAAAGTGGGTTGAAAGAACAAAGAGAGAGAAAGAACAAAAGTAAAGTGACTCAAGAATTAGTTGAAAGAAAAGTAAAGAAAAAGAAAAATATACAAGAAATACAAGCAAGAAAAGAAAAGAGCCACTTACATAAATAAAGAAAGAAGAGAAAATAGCAAGGTGAAAGAATATGAGAAACTGGGCAAGATAAAATGATAGAAAGTGGAAGGTTTAGCCGATATGTCAAGGAGGGAAAAAAGTCACTAAGTATACCTAAATATACCCTACCTGACCCTGAGCCTATGTTACAAGCCAAGAAAGTCCTATCGTGATCCTAAGGATTGTATAGCGAACTTAAGGCAGTGAAAATAAGGGCAAGCTTATGGCAATAGGTATGAATGAGTGTGACTTTGCTCTGAGAGCGAATGTTGAAAAGTAATCCTTATACTCAAATTGAAATCATTGTGTGAAAAATGAGGATTTTGTTTTGAAGTGAGAACACTAGTTGCAATACCGAAATTGTTAGCACCTCAGTGAGAAATTGAAGAGGATAGGTGTTAGTGCATGGTGAGTTTGTGTCATGTTCTGATCCCACATAATTCAAGCCTAATAGTGATAGCATGCATAGATTTGATGAGATTAATCGGGATTCATAGCCAAATGATTGCAAAGGATAAAATATGGATACTATTGTACAAAGATTTTGTATTGAGTCATAGTGCGTCGCTTGAGGACAAACAACGAATTTAAGTTGAGGGTGTTGATATAACGTGGTTTCATGTTATAATTAATACTTTTTCCTTAAGTTTAGTGTGTCCAAAAGCCTTTTTGTGCTAATTTTTATATAAGTTTCTTTTTATTTTGCAGGAAATCTGTCCAAAGCTAAATGCGGAGATTTTGAGCGAAAAATGCAGAAGAGAAAACCTAAGGAGCTTATGACGGTCCGTCGTGGTTGTGACGGTCCGTAGGTGGCAGCGTAGTGCAGCAGCTAAAGGAAGATGAGGAAGTCTGACCAAGTGTGGGGTTACGAAGCTTGTGATGGTCCGTCGTGTCTATGACTGTCCGTCCTGCAGGTTTGTCATGAAGTTCAGAGAAGTAATCCCAGTACCCATATTCCAAGAGTTGAAGTATTTTGGAACGAAGACCCTCGACGGACCGTTGTGTCTATGACGGTCCGTCATACCTTCCGTCGAGGGTAATGAAGAAGAGCAGTAGAAGAAATTGCACGAGTATGGGATGACGGAGTCCATGACGGTCCGTCGTGACCATGACGATCCGTCGATCCAGCCGGGTTTTGGCAGATTTCCAACAAATAGAGTCCTTGTTTAATTAGGTTTTTATTTTTTTATAAATAGTTGGAAATCCCTCGTTTTTGAGGTTAGACAATTAGATTGTTAGACTCTGGATCATTGTTAGACTCCGTATTGTTAGACACCTTATTAGTAAACATTATATTGTTAGACTTTTGATTATCATTGATTGTTGGTGATTTTTTGTGATTAATCAAGCAAACTCTCGGATTTTACTCTTTCTCATTGAAGTAAGTACATGAATTCTTATTTAATATATTTGAATATTATGATTATGACTATGAGTAACTAAACTTCATAACTAGGGTTGTGGGAACCATAGGCTAATAATGAGATAAAACCTAACTAAAATAACAATTCTAGAATAGTGTCTTGCATGTATTAATAATTCTTTCGCTTAGAAG</genome_strand>
        <mrna_strand>GGAACGAAGACCCTCGTCGGACCG-TGTGCCTACGACGGTCCGTCATACATGCCGTCGAGGGTAATGAAG-AGAGCAGCAAAAGAAATTGCATAAGTATGGGACAACGGAGTCCATGACGGTCTGTCGTGACCACGACGATCCGTCGTGAGGTCCGTCGACCCAGCCGCGTTTTGGCAGATTTCCAGCAAATATAGTCCTTGTTTAATTAGGTTTTTATTTTCTATAAATAGTTCTAAAAACATCATTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGACTCTGGATCATTGTTAGACTCCGTATTGTTAGACATCGTATAAGAAAACATTTTATTGTTAGACTTTTGATTATCATTAATTGTTGGTGATTTTTTGTGATAAATCAAGAAAACTCTCAGATTTTACTCTTTCTCTTTGAATTAAGTACATGAATTCTTATATGATATATTTGAATATTGTGATTATGACTATGGTTAACTAAACTCCATAACTAGGATTGTGGGAACCATAGGAGAATATTGAGGTAAAACCTAACTAAAATAACAATTCTAGAATAGTGTCTTGCATGTATTAATAATTCTTTGGCTCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550645" ref_strand="-" ref_description="SGN-E550645 [TUS-11-L2]">
      <seq>ggaacgaagaccctcgtcggaccgttgtgcctacgacggtccgtcatacatgccgtcgagggtaatgaagagagcagcaaaagaaattgcataagtatgggacaacggagtccatgacggtctgtcgtgaccacgacgatccgtcgtgaggtccgtcgacccagccgcgttttggcagatttccagcaaatatagtccttgtttaattaggtttttattttctataaatagttctaaaaacatcatttttgaggtaagactctggatcattgttagactccgtattgttagacatcgtataagaaaacattttattgttagacttttgattatcattaattgttggtgattttttgtgataaatcaagaaaactctcagattttactctttctctttgaattaagtacatgaattcttatatgatatatttgaatattgtgattatgactatggttaactaaactccataactaggattgtgggaaccataggagaatattgaggtaaaacctaactaaaataacaattctagaatagtgtcttgcatgtattaataattctttggctcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0012M01.2" temp_strand="-" temp_description="C00HBa0012M01.2  CU915724.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0012M01 sequenced_by:sanger upload_account_name:uk">
        <position start="51375" stop="40551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51075" g_stop="50822" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50821" i_stop="41172" i_length="9650">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41171" g_stop="40851" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="574" r_length="321" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0012M01.2" gen_strand="-" ref_id="SGN-E550645" ref_strand="-">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0012M01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550645" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51075" e_stop="50822"/>
          <exon e_start="41171" e_stop="40851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACGAAGACCCTCGACAGACCGTTGTGCCTATGACGGTCCGTCAAACTTGCCGTCGAGGGTAATGAAGAAGAGAAGCATAAGAAATTGAACAACTTTGGGACGATGGAGTCCATGACGGTCCGTCATGACCATGACGATCCGTCGCGAGGTCCGTCGACCCAGCCGCATTTTGGCAGACTTCCAGCAAATAGAGTACTTGTTTAATTAGGTTTTTATTTTTTATAAATAGTTCGAAAAACCACGTTTTTGAGGTTCGACTCTTAGACTTTCAGACTCTGGATCATTGTTAGACTCCGTATTATTAGACACCGTATTAGTAAACATTGTATTGTTAGACTTTAGATTATCATTGATTGTTGGTGATTTTCGGTGATTAATCAACCAAACTCTCGAATTTTACTCTTTCTCATTGAATTAAGTACATGAATTTTCTTATTCAATATATTTGAATATTGTGATTATGACTATGAGTAACTAAACTCCATAACTAGGGTTGTGGGAACCATAGGCAAATAATGAGATAAAACCCAACTAAAATAACAATTCTAGAATAGTGTCTTGAATGTATTAATAATTCTTTCGCTTAGAAGTCTTTTTAACGGATGGCCAACGTTAGAAGTCGCCTTAATGCTACTTGCCGGACAAAGGAGGTAGATAATAGGAACCAAATTATTAACATAGATTTAGTGTATACTATCTAATAGGCTAGTAATAATTGGTACGAGGTAATAACTTAGTCAAATATTGAATACGATGCTTAATATGAGGTAAAGATAAGGGTTAGTAAAGCAACACACATAGCCGGACCAAGGTGCGGAGTGAGATTTTCTAGATGCCCGACTAAGGATTTAGAAATACGTAACTTGTCACTTTGTATGCAAGATACTAGGAAAGAATTGTTATAGTTAGAATTATCAAGTTATGAACCTGTAGGGAACACGTAAACCCTAGTTACTTTGATTAATTGATTAAAAATCCAACTTTCAAAGCTGTTAAGTGTCTCTTTTAATTTTGTTAGTTATTTTTACTCATTTAGAAATAGAAACCCCCCTTTTTATTGTTTTACTTTCCAAGGAAGTCATTGACCAAACAATAGTAATAACAGGTTGAAGTTAAGTCTAGACTATTTTCCTCGTGGGAACGATCCCAAACTCACTAGTTGGGTTATTTACTTGACACGACCGCTTTACTTCTTATTTGAGAAGTAAGTTTGAGCGTATCAAATTTTGGCGTCGTTGCCGGGGATTACAACTTTTAGATTAACTTGAACTTATTACTATAGTTTAGTTGATATTTTCTTTATTTTACTTTGTTTTATTGTTTTTGATTTTTTTTAGACTATCCTCCTTGTATGCCAAATACACGGAGAGAAAGAGAACCCATGTTTCCCCACGATCACGAGTTAGAGCGTACACTATGAAATATGAATCGAAACTTGGGAATAAATGATGATGATCTGAACTAGAACATCCCAGCTCCGGTTGATGTTCATGGTCATATGTTACCCGATGCTCCGGGTGAACACCAACAGAGGGGACAAAATCCCATTCCACGGCCCCAAGCATACTACAGAGGCTATGATAACATAGCAGACTCGGATGGGCCACTTGTCTTGCCTCCTCTACCCACAAGACACACCTTTGTGGTAACTAGTAGCCTGATGCAAATGCTCACTGCCAGAGGTTTGTTTTTAGGGCTACCTTCTAAGGATCCACATTACTATATAGCTAAGGTAAGGGCAGTGTGTAAAATCTGTGTAGGGAGGCCTGATTTGGATTTAGATGTAATAGGTCTCAGAGTGTTTCCTCTCTCACTGGCGGGAGAGGCTGCTATGTGGTTCACTGAGCTCCCATACAACTCAATCTTCACTTGTAACCAACTAAGGGATGTCTTCTTAGAACGCTACGATCTGGTCTCAATGAAACTAAACCACAAAGACAGAGTGAATAACTTTGTAGCACTACCGGGAGAGTCGGTTAGTAGTTCTTGGGATAGATTCACCTCATTCTTGAGAAGTTTTCCAAATCACCGTATAGATGATGAGTCACTAAAGGAATACTTCTATCGGGGACAGGATGATAACAATAAAGCGGTGTTGGACACTATAGCAGGTGGATCTTATGGGGAGTGTCCTTATGCTGAGATCACTGAAAAATTAGAGAAAATCTCCCGGAATAACAAAGCTTGGAGTACTAGGAAGTCTGATACAGAGAGAAACACATTCGTAGTGCAGTCCACTCACAACCCAGCAACAGATGAGATTCGTGAAGAAATGGCTCAGATGAGAACCGAGCATGGGTTGGTACTAAAACATGACACTGGGGGTGCAGAAAAGATAAATGCAGTCAACTACTTGGATAAACCACTACCTACTAATGATGAATGCTATTATGCGCTGGACACTTATGCAGTAAACGAGCAGACGGGGGGTTTCCGACCAAGCGCCCAAGGCTCAAATCAGGATAACTGGCGCCAAGGTCGGAACTATGGTAACTACAACTGTGAGGGTCATTATGTCCGAGATGGAAAATACAACCGCGACAACAACTTTAACAGGTGTAACTATGCTAATAAAAACGACAGGAATGGGCCCTATGTCCCTCCTCAAAATCGTGTAGTTACTCCTAGGGATGGTGGAGATAGTATAGAGCGAGTTGAGGATATGTTGCACAAAATGATGAGGAGATTCGATGCTAGTGATGAGCACATTAAAGAGTTGAGGTGTGATTTAGCTAGTATTGGGCAAAAAGTTTATACACATGCAATTTCGATTAAGAAGATCGAGTTGCAAATGGCGCAATTATCTACGACAGTGAACACATGGCAACCGGGCACTCTTCCTAGCAACACTTTCCAAAATCCAAAGAATGATGCGCATTGTATGGAAATCACTACTCGGGGTGGTAAGCAAACCATTGACCCACCTATGACGTCTACTGAGGAAAATGTGAGAAAGGATAATGATAATGTGGTAAAGGGTAGTGGTGAAGCAGAGGAAAGTAATGGAAAAGATGCAGAAGTACCTATGAGGTTAATTCCCATGCCTAGGCCACCACCACCTTTCCCTCAGAGATTAGTGAAAAAGACCGATGATAGTAAATACCGTCATTTCATAACAATGTTGAAGCAGCTTTCAATCAATGTCCCTTTGGTAGAACTCTAGAACAAATGCCCGGTTATGCCAAATTTATGAAAGATCTGGTCACCAAGAAAAGATCGGTCACTTTTGAGGATGATGATAGACTACAACATTGTAGTGCTATTGCTACAAGATCCCTCGTACAAAAGAAAGAAGATCCGGATGCGTTCACTATTCCTTGTACAGTAGGGTCATTACATTTTGTGAAAGCATTATATAATCTGGGGGCAAGCATAAATCTCATGCCCCTCTCAATTTACAAGAAGTTGGGTTTGGGGGATCCAAAACCCACTGCGATGCGGCTACTGATGGCTGATCGGACAGTGAAACGGCCTATAGGGATACTCCATGATGTGCTAGTAAAAGTAGAGTCATTCATCTTTCTGGCTAATTTTGTTATTCTTGATTGTGAGGTCGATTGTGAACTGCCTATTATTCTTGGGAGGACATTCCTTGCTACAGTTAGAGCCTTAGTTGATATGGAGAAGGGGCAGATGAAATTTTGGTTGAACAATGAAGAAGCGACCTTCAACGTTTGTAGGACCATGAGGCAGAGTGGTGAGCTCCAATCGGTATCAGCCATATCCCACAAAGAAAAGATGAAGAAAAAGAATGAAGAAAAAAGTGCAAAACAAGAGTTTATGGCTGGGGATTTGGTGCTTGTAGACAGTTCTGGGGTGCCTTGTCTTCCGAGAAAGCTCAAGTCCAAATGGACTGGCCCTTACTTGATTACCCAAGTATTCCCTCATGGAACAGTTGAGTTAAAAGCCAAGGAGGAAGTGCGGTTTGAGGTTAATAGAGAACGAACAAAACTCTATTTTGGGCATAAAGCATCGGGGAATAAAGTAAAAGAGGCAAACCATCTTGATGAAGGCTGAGTAATCAAGTGTCCCCGGTCGTGCCACGACATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATAGTCTTTTTAGTAATGGTAGCATTTTTCTACTAATGGGTTTTTAAATTTGCAGGCACATCACCAGGAAATTCTGTAGAAAATTACTCTGCAGCAGCCACTGACGGATACATCGACGGACCATTGCGCCTGCGACGGACCGTCGTATGCCTCCTACATACCACGTACATTTTCCTGTTATTTTCAAACTAGGGCACACACGACGGACCCAATGACGGTTCGTCACAACTGAGACGGACCGTCGTCGGGGAGTCATTGAGTCATTAATGAGTCGTACCCGACCCGACCCGGCTAGAGTCTTTTTCAAAATCAGACCGTTTAAACCCCCCCCCCCAACCCCTCAGTTCACCCCATTCCTTCATTTTACCTCCCATTTCCCTCTCTTTTCAACTTCCACATTCTCTCCCTCGATCATTGTTCCCCCAAAATTCTCCAAAGCCCTAGAAGTTATCATTTACTAGTCGTAGTTGCTGCTTTGGGTGTTTTCTTGGTCACCGAGTACTTTCCCATATTGTTTTTCTCCAATTCTAAGGTATGTGTCTCTAATTTATACTCATTTATCTTGCATTTTTGTTTATTAATTAGTATTAGCTTAGTTCTTCGTCATATGTTCGTTTCTTGTATATAAGATTCTGTCTAACCTAGGTTAAAATGTTGGAAATTGCCATGTTTACAACCCTAGACATAGGTGCTTTCACATTACTAGTTTCCTAGGTAGTTGGGTTAGACAAATGTAGGTCCAAAACACTACAAGTCGGGGATGCATGGGGTACCCCCAGCTCTATCACTGATCTACAGAACAAGACCTTGATGAAGGACCGTCTTGCCCACGACGGACCATCATAGGGTCCGTTCCAAAAGCCCTAACACCCCATTGTCCATCTTTTTAGTGTCCTTCAACGGACACATTTGATGGACCGTCATACCCACGACGGTCCATCCTGCACAACCCTTCTGGTTGTCAGAGACCCTGTTTCTAAGGGTCTCTCATTTTTTTTCTAAGTGTCCCCCAACGGACACATGTGACGGAACCGTTCTGGTTGTCAGAGACCCTGTTTCTAAGGGTCTCTCACTTTTTCTAAGTGTCCTTCAATGGACACATGTGACGGACGGTCATGCCCACAACGGTCTGTCCTGCATGACCGTCATGAGGGTCAGTGACCCCTCTCCTAAGGGTCTCCATAATTTTTTCCAAGTGTCCTACGACCGACACCTACGACGGACCGTTGTACCTGTGACGGTCCGTCCTGCACATACCGTCATACTAGTTAGAGACTCTCCTTCAGGGTTCTCCATATATACATAGTCTAAGTAATACACGACGGACCCCATGACGGTCTGTCATAGCCACGACGAGTCGTCACCAGGCTCGTCATGTGTCACTGTTACCATAGAAATGACATACAATTTTAATTTTTTGGGTACTTCTTACTTGTCTTGTTTGCCACTACTCGTACTAATATTGATCCTTTACAGGTACTATCTACTATGAAACCCAAGAAAGATCAAATCTATGCACGCGGGCGATCGAAGTCTGTCGCCCCGTCTACCCACATGGTCATTGGCTTTGATGATGAGCGTGACCCCAAGTATGTGCCCCCAGGCACTTCCACCCCTTCCAGTGCTGCACGTGCTCCCAGAGCCACACCCAAAAAGGTGGCGTCCAGCGTAGTCACTGCCTCCAAGTCTGATGAAGAGCGCACACAGACCGGCACACCCTCTGAGTCAGCAACAAATGAAGAAGGAGTGTCTGCCTTCTTAGGAGTATCTTGGTCGGAGGAAGCCTCCGGCTCTGCTGAGGTTCCCGCACCCGCCACCGCTGCAGCGTCGGCCTCATCTGATGAGGCTGACAGTTTTGAATCCACATCAGGCTCACCAGCTCAGGTCCCCACCCCATCCACTGACCAGCCCAACCGATGGTGTGTCGACGGGCAATTTCAAGTCTATTCCGATGCCAAGTTCCTGATTGATAATGGATTAATGACTCGAACACTCACCTTGGAGCGGCGGGTCCTTACAGGGAGTCTCCCGATGATACCTGAGATCCACAATGTGTTCACCAGACATCGCTTGGAGTGGACAGCATGTGCGTTGGGACGTTACAGTGAATAAATGGTTCGAGACGCATCCTACGTAGCGACTCTCCGATCAAAGATAGATGGCGGGCTGCCCGCGCTAAACAGGCTCCACTGGAGCAGGTCCGAGTACAGGGCGTACAGGTTGACATTTCCCTGCCTGCATCCGCCGGTTTCTATACGGCGAGGGTGTTTATGCTACTCGGACCCCTCTCACTGCCGAGTTTGAATACCGCTGGAAGATAGTGAAAGATGGCCAGTTCCTGCGTGATCCATCACTGAGAGAGACCACCACAAGGTGGATGGCCCTGCACCTGTCAGTTGATGGAGAGGGTGCCGACTGGGTGACTGAGCCAAAGGGGGCCATCAAGAAGGCCAACCTCACTTTCACGGCGAAGTTCTTGTGGTTGCTTGTCCATCATTGCCTTTCCCCCAGAGCTGCTGATAGTATCGTTACATGGGATCGAGCAGTGTTGATGGCGGCGATGATAGCTGGGTTCGAGGTGGACTTCGCGTGGCTTCTACAGAAAGTCATGCACGAGAGGGCATTCAAGGTCACTACTACTTACCCTTTCCCGTGCATGATCTTTGCTCTCTGCAGGTCCGCAGGTGTGCCTTTATGGCACGTAGATCAGCTCAAGACCCCGCAGGGCACTGTTGACGTCGGCCTCATTAGAGATGAGGCCAATGAGTTGGCTCCACGCAGAGGGCCCTGTCCAGAGCTTCCCCCACTTGCTGATGATCTTGATGATACGGTAGCCCAGGCCCGCACGGCTACACAGGCGGCGTCCACTGACACTACCCCGGTCGAGTCTATCCCGGTTAGTAGCCATGATCCGAGCTATTCTCGCACAGCCCCTCTACCAGCACTGGTCCAGCTTTCTAGAGTCCAAAAATTAGAGGCGCAGATGTCTACACTTTTGCATCATATCCAGCCGTGGATGCAAAAGTCTATTACTGAGTCAGAAGAGCGCCTAGAGTGAAAAATGGTCCAGTTTACAGGGCGGAAGATTTCTGAGGTTCACCGGCACTTGGACGCCTTTGAGTTGAGGGTGCTAGCTCGGCCAGCCCCTCTAGTGGATGTGTTGAATCTTCAGGATGCGGTCGATAGCCTTCACACAGATATTGACACGATCTTAGAGGCTAGGGTGCCGGAGTCTGAGGCCCCTTCTGTCGATCCTGCTGAAGACACAGTGTTGGCGGCCCTATTTGCCACTTCAGAGATTCCACCACCTCCCCCTCGAGAGCATGCCAAGAGGCGTAGGGGCCGAGCAGAGGATGAGGCGTGAGCACAGAAGAAGGAGCACCGAGAGATGGAGGCTGCGAGGAGAGCCTCACTTGCTGAGGAGGAGGCGCACCAGATGAGAGCATCAGAGTTAGCGGCTGGGGCATCTAGCTCCCGAACTGTGGAGATAGCAGGAGGCACTACTGATAGTGCGGTTGTGGCTGAGGACAACAGTGAGGGTATCCAGATTGCAGAGGACGTGGGTTCCGGGGAATTGGACTCACCAGCTTGCTGATTGACGGCGCTTTGCGCTACAGGTTTGCTTCACCTACAACTCTAGTATTTAACTTTTTATGCATTGGGGACAATTTCATGTTTTTTGGTTGGGGGTGGGGTAAATGGAAAGTGAGTGTTAGGGTGAAGTCTGAGTAGCCCAATTCACTATCCTCTTTTGGGGTTTTCTTGCCTGTGTTCTTTTTCCCCAAAAGACTGATTACTTTTTCTGTTGAACCGGCATGTTTATATTTTTTGTACATTGTTTAATTCTGGAGCATGATGGTTAAAATGATATAATGATAAACTGGAAAATGATGCATGACTAGGCATAGTAACTTATAATTATGTAGCTCTAAGCGTGACATAGAGTTACACTATTGCATTACCCTAAGTCTTAAATTCGAACTAGGTGTATGATAATCTGGTATAGTGATGAGATGTCAAGTGAGTGTGTGGAAAATTCGAATAAGTCCACTATTGGTACTGAGCTAGAACTTGCCTGGTTAGTCCTGCTAAAAGTAAGCTGTAATAGAAAATTGGGAAAGGATCATAGGCCTTTATTCAATATAGCCCAGCTTTAGCCTAAATAGAAAAAAACCAAATGAAATTTATCCTTCTTTGATCCAAATCATCTGAGCATAAAATAGACCTTTCTTTTTCACCCCCAACTTATCTTTTCTAGGAACAATGTGTTGGCCCTGGTCCCTCCTTAGACATGTGCACCTTAGCTTATGCCAAAAGCATAAGTTGAGGGTGGCTAATGCAGTAAACAACCTTCGTTATGGCCCTGACCCAACTTTGGGTATTGTGTACCTTGACTCATGGCAAAGCCATGAGTTGAGGGTGGCTATTATGAGGAATGCTCTGGAAAGTGGGTTGAAAGAACAAAGAGAGAGAAAGAACAAAAGTAAAGTGACTCAAGAATTAGTTGAAAGAAAAGTAAAGAAAAAGAAAAATATACAAGAAATACAAGCAAGAAAAGAAAAGAGCCACTTACATAAATAAAGAAAGAAGAGAAAATAGCAAGGTGAAAGAATATGAGAAACTGGGCAAGATAAAATGATAGAAAGTGGAAGGTTTAGCCGATATGTCAAGGAGGGAAAAAAGTCACTAAGTATACCTAAATATACCCTACCTGACCCTGAGCCTATGTTACAAGCCAAGAAAGTCCTATCGTGATCCTAAGGATTGTATAGCGAACTTAAGGCAGTGAAAATAAGGGCAAGCTTATGGCAATAGGTATGAATGAGTGTGACTTTGCTCTGAGAGCGAATGTTGAAAAGTAATCCTTATACTCAAATTGAAATCATTGTGTGAAAAATGAGGATTTTGTTTTGAAGTGAGAACACTAGTTGCAATACCGAAATTGTTAGCACCTCAGTGAGAAATTGAAGAGGATAGGTGTTAGTGCATGGTGAGTTTGTGTCATGTTCTGATCCCACATAATTCAAGCCTAATAGTGATAGCATGCATAGATTTGATGAGATTAATCGGGATTCATAGCCAAATGATTGCAAAGGATAAAATATGGATACTATTGTACAAAGATTTTGTATTGAGTCATAGTGCGTCGCTTGAGGACAAACAACGAATTTAAGTTGAGGGTGTTGATATAACGTGGTTTCATGTTATAATTAATACTTTTTCCTTAAGTTTAGTGTGTCCAAAAGCCTTTTTGTGCTAATTTTTATATAAGTTTCTTTTTATTTTGCAGGAAATCTGTCCAAAGCTAAATGCGGAGATTTTGAGCGAAAAATGCAGAAGAGAAAACCTAAGGAGCTTATGACGGTCCGTCGTGGTTGTGACGGTCCGTAGGTGGCAGCGTAGTGCAGCAGCTAAAGGAAGATGAGGAAGTCTGACCAAGTGTGGGGTTACGAAGCTTGTGATGGTCCGTCGTGTCTATGACTGTCCGTCCTGCAGGTTTGTCATGAAGTTCAGAGAAGTAATCCCAGTACCCATATTCCAAGAGTTGAAGTATTTTGGAACGAAGACCCTCGACGGACCGTTGTGTCTATGACGGTCCGTCATACCTTCCGTCGAGGGTAATGAAGAAGAGCAGTAGAAGAAATTGCACGAGTATGGGATGACGGAGTCCATGACGGTCCGTCGTGACCATGACGATCCGTCGATCCAGCCGGGTTTTGGCAGATTTCCAACAAATAGAGTCCTTGTTTAATTAGGTTTTTATTTTTTTATAAATAGTTGGAAATCCCTCGTTTTTGAGGTTAGACAATTAGATTGTTAGACTCTGGATCATTGTTAGACTCCGTATTGTTAGACACCTTATTAGTAAACATTATATTGTTAGACTTTTGATTATCATTGATTGTTGGTGATTTTTTGTGATTAATCAAGCAAACTCTCGGATTTTACTCTTTCTCATTGAAGTAAGTACATGAATTCTTATTTAATATATTTGAATATTATGATTATGACTATGAGTAACTAAACTTCATAACTAGGGTTGTGGGAACCATAGGCTAATAATGAGATAAAACCTAACTAAAATAACAATTCTAGAATAGTGTCTTGCATGTATTAATAATTCTTTCGCTTAGAAG</genome_strand>
        <mrna_strand>GGAACGAAGACCCTCGTCGGACCGTTGTGCCTACGACGGTCCGTCATACATGCCGTCGAGGGTAATGAAG-AGAGCAGCAAAAGAAATTGCATAAGTATGGGACAACGGAGTCCATGACGGTCTGTCGTGACCACGACGATCCGTCGTGAGGTCCGTCGACCCAGCCGCGTTTTGGCAGATTTCCAGCAAATATAGTCCTTGTTTAATTAGGTTTTTATTTTCTATAAATAGTTCTAAAAACATCATTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGACTCTGGATCATTGTTAGACTCCGTATTGTTAGACATCGTATAAGAAAACATTTTATTGTTAGACTTTTGATTATCATTAATTGTTGGTGATTTTTTGTGATAAATCAAGAAAACTCTCAGATTTTACTCTTTCTCTTTGAATTAAGTACATGAATTCTTATATGATATATTTGAATATTGTGATTATGACTATGGTTAACTAAACTCCATAACTAGGATTGTGGGAACCATAGGAGAATATTGAGGTAAAACCTAACTAAAATAACAATTCTAGAATAGTGTCTTGCATGTATTAATAATTCTTTGGCTCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550629" ref_strand="-" ref_description="SGN-E550629 [TUS-11-J2]">
      <seq>ggaacgaagaccctcgacggaccgttgtgcctacgacggtccgtcatacatgccgtcgagggtaatgaagagagcagcaaaagaaattgcataagtatgggacaacggagtccatgacggtctgtcgtgaccacgacgatccgtcgtgaggtccgtcgacccagccgcgttttggcagatttccagcaaatatagtccttgtttaattaggtttttattttctataaatagttctaaaaacatcatttttgaggtaagactctggatcattgttagactccgtattgttagacatcgtataagaaaacattttattgttagacttttgattatcattaattgttggtgattttttgtgataaatcaagaaaactctcagattttactctttctctttgaattaagtacatgaattcttatatgatatatttgaatattgtgattatgactatggttaactaaactccataactaggattgtgggaaccataggagaatattgaggtaaaacctaactaaaataacaattctagaatagtgtcttgcatgtattaataattctttggctcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0012M01.2" temp_strand="-" temp_description="C00HBa0012M01.2  CU915724.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0012M01 sequenced_by:sanger upload_account_name:uk">
        <position start="51375" stop="40551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51075" g_stop="50822" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50821" i_stop="41172" i_length="9650">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41171" g_stop="40851" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="574" r_length="321" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0012M01.2" gen_strand="-" ref_id="SGN-E550629" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0012M01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550629" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51075" e_stop="50822"/>
          <exon e_start="41171" e_stop="40851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACGAAGACCCTCGACAGACCGTTGTGCCTATGACGGTCCGTCAAACTTGCCGTCGAGGGTAATGAAGAAGAGAAGCATAAGAAATTGAACAACTTTGGGACGATGGAGTCCATGACGGTCCGTCATGACCATGACGATCCGTCGCGAGGTCCGTCGACCCAGCCGCATTTTGGCAGACTTCCAGCAAATAGAGTACTTGTTTAATTAGGTTTTTATTTTTTATAAATAGTTCGAAAAACCACGTTTTTGAGGTTCGACTCTTAGACTTTCAGACTCTGGATCATTGTTAGACTCCGTATTATTAGACACCGTATTAGTAAACATTGTATTGTTAGACTTTAGATTATCATTGATTGTTGGTGATTTTCGGTGATTAATCAACCAAACTCTCGAATTTTACTCTTTCTCATTGAATTAAGTACATGAATTTTCTTATTCAATATATTTGAATATTGTGATTATGACTATGAGTAACTAAACTCCATAACTAGGGTTGTGGGAACCATAGGCAAATAATGAGATAAAACCCAACTAAAATAACAATTCTAGAATAGTGTCTTGAATGTATTAATAATTCTTTCGCTTAGAAGTCTTTTTAACGGATGGCCAACGTTAGAAGTCGCCTTAATGCTACTTGCCGGACAAAGGAGGTAGATAATAGGAACCAAATTATTAACATAGATTTAGTGTATACTATCTAATAGGCTAGTAATAATTGGTACGAGGTAATAACTTAGTCAAATATTGAATACGATGCTTAATATGAGGTAAAGATAAGGGTTAGTAAAGCAACACACATAGCCGGACCAAGGTGCGGAGTGAGATTTTCTAGATGCCCGACTAAGGATTTAGAAATACGTAACTTGTCACTTTGTATGCAAGATACTAGGAAAGAATTGTTATAGTTAGAATTATCAAGTTATGAACCTGTAGGGAACACGTAAACCCTAGTTACTTTGATTAATTGATTAAAAATCCAACTTTCAAAGCTGTTAAGTGTCTCTTTTAATTTTGTTAGTTATTTTTACTCATTTAGAAATAGAAACCCCCCTTTTTATTGTTTTACTTTCCAAGGAAGTCATTGACCAAACAATAGTAATAACAGGTTGAAGTTAAGTCTAGACTATTTTCCTCGTGGGAACGATCCCAAACTCACTAGTTGGGTTATTTACTTGACACGACCGCTTTACTTCTTATTTGAGAAGTAAGTTTGAGCGTATCAAATTTTGGCGTCGTTGCCGGGGATTACAACTTTTAGATTAACTTGAACTTATTACTATAGTTTAGTTGATATTTTCTTTATTTTACTTTGTTTTATTGTTTTTGATTTTTTTTAGACTATCCTCCTTGTATGCCAAATACACGGAGAGAAAGAGAACCCATGTTTCCCCACGATCACGAGTTAGAGCGTACACTATGAAATATGAATCGAAACTTGGGAATAAATGATGATGATCTGAACTAGAACATCCCAGCTCCGGTTGATGTTCATGGTCATATGTTACCCGATGCTCCGGGTGAACACCAACAGAGGGGACAAAATCCCATTCCACGGCCCCAAGCATACTACAGAGGCTATGATAACATAGCAGACTCGGATGGGCCACTTGTCTTGCCTCCTCTACCCACAAGACACACCTTTGTGGTAACTAGTAGCCTGATGCAAATGCTCACTGCCAGAGGTTTGTTTTTAGGGCTACCTTCTAAGGATCCACATTACTATATAGCTAAGGTAAGGGCAGTGTGTAAAATCTGTGTAGGGAGGCCTGATTTGGATTTAGATGTAATAGGTCTCAGAGTGTTTCCTCTCTCACTGGCGGGAGAGGCTGCTATGTGGTTCACTGAGCTCCCATACAACTCAATCTTCACTTGTAACCAACTAAGGGATGTCTTCTTAGAACGCTACGATCTGGTCTCAATGAAACTAAACCACAAAGACAGAGTGAATAACTTTGTAGCACTACCGGGAGAGTCGGTTAGTAGTTCTTGGGATAGATTCACCTCATTCTTGAGAAGTTTTCCAAATCACCGTATAGATGATGAGTCACTAAAGGAATACTTCTATCGGGGACAGGATGATAACAATAAAGCGGTGTTGGACACTATAGCAGGTGGATCTTATGGGGAGTGTCCTTATGCTGAGATCACTGAAAAATTAGAGAAAATCTCCCGGAATAACAAAGCTTGGAGTACTAGGAAGTCTGATACAGAGAGAAACACATTCGTAGTGCAGTCCACTCACAACCCAGCAACAGATGAGATTCGTGAAGAAATGGCTCAGATGAGAACCGAGCATGGGTTGGTACTAAAACATGACACTGGGGGTGCAGAAAAGATAAATGCAGTCAACTACTTGGATAAACCACTACCTACTAATGATGAATGCTATTATGCGCTGGACACTTATGCAGTAAACGAGCAGACGGGGGGTTTCCGACCAAGCGCCCAAGGCTCAAATCAGGATAACTGGCGCCAAGGTCGGAACTATGGTAACTACAACTGTGAGGGTCATTATGTCCGAGATGGAAAATACAACCGCGACAACAACTTTAACAGGTGTAACTATGCTAATAAAAACGACAGGAATGGGCCCTATGTCCCTCCTCAAAATCGTGTAGTTACTCCTAGGGATGGTGGAGATAGTATAGAGCGAGTTGAGGATATGTTGCACAAAATGATGAGGAGATTCGATGCTAGTGATGAGCACATTAAAGAGTTGAGGTGTGATTTAGCTAGTATTGGGCAAAAAGTTTATACACATGCAATTTCGATTAAGAAGATCGAGTTGCAAATGGCGCAATTATCTACGACAGTGAACACATGGCAACCGGGCACTCTTCCTAGCAACACTTTCCAAAATCCAAAGAATGATGCGCATTGTATGGAAATCACTACTCGGGGTGGTAAGCAAACCATTGACCCACCTATGACGTCTACTGAGGAAAATGTGAGAAAGGATAATGATAATGTGGTAAAGGGTAGTGGTGAAGCAGAGGAAAGTAATGGAAAAGATGCAGAAGTACCTATGAGGTTAATTCCCATGCCTAGGCCACCACCACCTTTCCCTCAGAGATTAGTGAAAAAGACCGATGATAGTAAATACCGTCATTTCATAACAATGTTGAAGCAGCTTTCAATCAATGTCCCTTTGGTAGAACTCTAGAACAAATGCCCGGTTATGCCAAATTTATGAAAGATCTGGTCACCAAGAAAAGATCGGTCACTTTTGAGGATGATGATAGACTACAACATTGTAGTGCTATTGCTACAAGATCCCTCGTACAAAAGAAAGAAGATCCGGATGCGTTCACTATTCCTTGTACAGTAGGGTCATTACATTTTGTGAAAGCATTATATAATCTGGGGGCAAGCATAAATCTCATGCCCCTCTCAATTTACAAGAAGTTGGGTTTGGGGGATCCAAAACCCACTGCGATGCGGCTACTGATGGCTGATCGGACAGTGAAACGGCCTATAGGGATACTCCATGATGTGCTAGTAAAAGTAGAGTCATTCATCTTTCTGGCTAATTTTGTTATTCTTGATTGTGAGGTCGATTGTGAACTGCCTATTATTCTTGGGAGGACATTCCTTGCTACAGTTAGAGCCTTAGTTGATATGGAGAAGGGGCAGATGAAATTTTGGTTGAACAATGAAGAAGCGACCTTCAACGTTTGTAGGACCATGAGGCAGAGTGGTGAGCTCCAATCGGTATCAGCCATATCCCACAAAGAAAAGATGAAGAAAAAGAATGAAGAAAAAAGTGCAAAACAAGAGTTTATGGCTGGGGATTTGGTGCTTGTAGACAGTTCTGGGGTGCCTTGTCTTCCGAGAAAGCTCAAGTCCAAATGGACTGGCCCTTACTTGATTACCCAAGTATTCCCTCATGGAACAGTTGAGTTAAAAGCCAAGGAGGAAGTGCGGTTTGAGGTTAATAGAGAACGAACAAAACTCTATTTTGGGCATAAAGCATCGGGGAATAAAGTAAAAGAGGCAAACCATCTTGATGAAGGCTGAGTAATCAAGTGTCCCCGGTCGTGCCACGACATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATAGTCTTTTTAGTAATGGTAGCATTTTTCTACTAATGGGTTTTTAAATTTGCAGGCACATCACCAGGAAATTCTGTAGAAAATTACTCTGCAGCAGCCACTGACGGATACATCGACGGACCATTGCGCCTGCGACGGACCGTCGTATGCCTCCTACATACCACGTACATTTTCCTGTTATTTTCAAACTAGGGCACACACGACGGACCCAATGACGGTTCGTCACAACTGAGACGGACCGTCGTCGGGGAGTCATTGAGTCATTAATGAGTCGTACCCGACCCGACCCGGCTAGAGTCTTTTTCAAAATCAGACCGTTTAAACCCCCCCCCCCAACCCCTCAGTTCACCCCATTCCTTCATTTTACCTCCCATTTCCCTCTCTTTTCAACTTCCACATTCTCTCCCTCGATCATTGTTCCCCCAAAATTCTCCAAAGCCCTAGAAGTTATCATTTACTAGTCGTAGTTGCTGCTTTGGGTGTTTTCTTGGTCACCGAGTACTTTCCCATATTGTTTTTCTCCAATTCTAAGGTATGTGTCTCTAATTTATACTCATTTATCTTGCATTTTTGTTTATTAATTAGTATTAGCTTAGTTCTTCGTCATATGTTCGTTTCTTGTATATAAGATTCTGTCTAACCTAGGTTAAAATGTTGGAAATTGCCATGTTTACAACCCTAGACATAGGTGCTTTCACATTACTAGTTTCCTAGGTAGTTGGGTTAGACAAATGTAGGTCCAAAACACTACAAGTCGGGGATGCATGGGGTACCCCCAGCTCTATCACTGATCTACAGAACAAGACCTTGATGAAGGACCGTCTTGCCCACGACGGACCATCATAGGGTCCGTTCCAAAAGCCCTAACACCCCATTGTCCATCTTTTTAGTGTCCTTCAACGGACACATTTGATGGACCGTCATACCCACGACGGTCCATCCTGCACAACCCTTCTGGTTGTCAGAGACCCTGTTTCTAAGGGTCTCTCATTTTTTTTCTAAGTGTCCCCCAACGGACACATGTGACGGAACCGTTCTGGTTGTCAGAGACCCTGTTTCTAAGGGTCTCTCACTTTTTCTAAGTGTCCTTCAATGGACACATGTGACGGACGGTCATGCCCACAACGGTCTGTCCTGCATGACCGTCATGAGGGTCAGTGACCCCTCTCCTAAGGGTCTCCATAATTTTTTCCAAGTGTCCTACGACCGACACCTACGACGGACCGTTGTACCTGTGACGGTCCGTCCTGCACATACCGTCATACTAGTTAGAGACTCTCCTTCAGGGTTCTCCATATATACATAGTCTAAGTAATACACGACGGACCCCATGACGGTCTGTCATAGCCACGACGAGTCGTCACCAGGCTCGTCATGTGTCACTGTTACCATAGAAATGACATACAATTTTAATTTTTTGGGTACTTCTTACTTGTCTTGTTTGCCACTACTCGTACTAATATTGATCCTTTACAGGTACTATCTACTATGAAACCCAAGAAAGATCAAATCTATGCACGCGGGCGATCGAAGTCTGTCGCCCCGTCTACCCACATGGTCATTGGCTTTGATGATGAGCGTGACCCCAAGTATGTGCCCCCAGGCACTTCCACCCCTTCCAGTGCTGCACGTGCTCCCAGAGCCACACCCAAAAAGGTGGCGTCCAGCGTAGTCACTGCCTCCAAGTCTGATGAAGAGCGCACACAGACCGGCACACCCTCTGAGTCAGCAACAAATGAAGAAGGAGTGTCTGCCTTCTTAGGAGTATCTTGGTCGGAGGAAGCCTCCGGCTCTGCTGAGGTTCCCGCACCCGCCACCGCTGCAGCGTCGGCCTCATCTGATGAGGCTGACAGTTTTGAATCCACATCAGGCTCACCAGCTCAGGTCCCCACCCCATCCACTGACCAGCCCAACCGATGGTGTGTCGACGGGCAATTTCAAGTCTATTCCGATGCCAAGTTCCTGATTGATAATGGATTAATGACTCGAACACTCACCTTGGAGCGGCGGGTCCTTACAGGGAGTCTCCCGATGATACCTGAGATCCACAATGTGTTCACCAGACATCGCTTGGAGTGGACAGCATGTGCGTTGGGACGTTACAGTGAATAAATGGTTCGAGACGCATCCTACGTAGCGACTCTCCGATCAAAGATAGATGGCGGGCTGCCCGCGCTAAACAGGCTCCACTGGAGCAGGTCCGAGTACAGGGCGTACAGGTTGACATTTCCCTGCCTGCATCCGCCGGTTTCTATACGGCGAGGGTGTTTATGCTACTCGGACCCCTCTCACTGCCGAGTTTGAATACCGCTGGAAGATAGTGAAAGATGGCCAGTTCCTGCGTGATCCATCACTGAGAGAGACCACCACAAGGTGGATGGCCCTGCACCTGTCAGTTGATGGAGAGGGTGCCGACTGGGTGACTGAGCCAAAGGGGGCCATCAAGAAGGCCAACCTCACTTTCACGGCGAAGTTCTTGTGGTTGCTTGTCCATCATTGCCTTTCCCCCAGAGCTGCTGATAGTATCGTTACATGGGATCGAGCAGTGTTGATGGCGGCGATGATAGCTGGGTTCGAGGTGGACTTCGCGTGGCTTCTACAGAAAGTCATGCACGAGAGGGCATTCAAGGTCACTACTACTTACCCTTTCCCGTGCATGATCTTTGCTCTCTGCAGGTCCGCAGGTGTGCCTTTATGGCACGTAGATCAGCTCAAGACCCCGCAGGGCACTGTTGACGTCGGCCTCATTAGAGATGAGGCCAATGAGTTGGCTCCACGCAGAGGGCCCTGTCCAGAGCTTCCCCCACTTGCTGATGATCTTGATGATACGGTAGCCCAGGCCCGCACGGCTACACAGGCGGCGTCCACTGACACTACCCCGGTCGAGTCTATCCCGGTTAGTAGCCATGATCCGAGCTATTCTCGCACAGCCCCTCTACCAGCACTGGTCCAGCTTTCTAGAGTCCAAAAATTAGAGGCGCAGATGTCTACACTTTTGCATCATATCCAGCCGTGGATGCAAAAGTCTATTACTGAGTCAGAAGAGCGCCTAGAGTGAAAAATGGTCCAGTTTACAGGGCGGAAGATTTCTGAGGTTCACCGGCACTTGGACGCCTTTGAGTTGAGGGTGCTAGCTCGGCCAGCCCCTCTAGTGGATGTGTTGAATCTTCAGGATGCGGTCGATAGCCTTCACACAGATATTGACACGATCTTAGAGGCTAGGGTGCCGGAGTCTGAGGCCCCTTCTGTCGATCCTGCTGAAGACACAGTGTTGGCGGCCCTATTTGCCACTTCAGAGATTCCACCACCTCCCCCTCGAGAGCATGCCAAGAGGCGTAGGGGCCGAGCAGAGGATGAGGCGTGAGCACAGAAGAAGGAGCACCGAGAGATGGAGGCTGCGAGGAGAGCCTCACTTGCTGAGGAGGAGGCGCACCAGATGAGAGCATCAGAGTTAGCGGCTGGGGCATCTAGCTCCCGAACTGTGGAGATAGCAGGAGGCACTACTGATAGTGCGGTTGTGGCTGAGGACAACAGTGAGGGTATCCAGATTGCAGAGGACGTGGGTTCCGGGGAATTGGACTCACCAGCTTGCTGATTGACGGCGCTTTGCGCTACAGGTTTGCTTCACCTACAACTCTAGTATTTAACTTTTTATGCATTGGGGACAATTTCATGTTTTTTGGTTGGGGGTGGGGTAAATGGAAAGTGAGTGTTAGGGTGAAGTCTGAGTAGCCCAATTCACTATCCTCTTTTGGGGTTTTCTTGCCTGTGTTCTTTTTCCCCAAAAGACTGATTACTTTTTCTGTTGAACCGGCATGTTTATATTTTTTGTACATTGTTTAATTCTGGAGCATGATGGTTAAAATGATATAATGATAAACTGGAAAATGATGCATGACTAGGCATAGTAACTTATAATTATGTAGCTCTAAGCGTGACATAGAGTTACACTATTGCATTACCCTAAGTCTTAAATTCGAACTAGGTGTATGATAATCTGGTATAGTGATGAGATGTCAAGTGAGTGTGTGGAAAATTCGAATAAGTCCACTATTGGTACTGAGCTAGAACTTGCCTGGTTAGTCCTGCTAAAAGTAAGCTGTAATAGAAAATTGGGAAAGGATCATAGGCCTTTATTCAATATAGCCCAGCTTTAGCCTAAATAGAAAAAAACCAAATGAAATTTATCCTTCTTTGATCCAAATCATCTGAGCATAAAATAGACCTTTCTTTTTCACCCCCAACTTATCTTTTCTAGGAACAATGTGTTGGCCCTGGTCCCTCCTTAGACATGTGCACCTTAGCTTATGCCAAAAGCATAAGTTGAGGGTGGCTAATGCAGTAAACAACCTTCGTTATGGCCCTGACCCAACTTTGGGTATTGTGTACCTTGACTCATGGCAAAGCCATGAGTTGAGGGTGGCTATTATGAGGAATGCTCTGGAAAGTGGGTTGAAAGAACAAAGAGAGAGAAAGAACAAAAGTAAAGTGACTCAAGAATTAGTTGAAAGAAAAGTAAAGAAAAAGAAAAATATACAAGAAATACAAGCAAGAAAAGAAAAGAGCCACTTACATAAATAAAGAAAGAAGAGAAAATAGCAAGGTGAAAGAATATGAGAAACTGGGCAAGATAAAATGATAGAAAGTGGAAGGTTTAGCCGATATGTCAAGGAGGGAAAAAAGTCACTAAGTATACCTAAATATACCCTACCTGACCCTGAGCCTATGTTACAAGCCAAGAAAGTCCTATCGTGATCCTAAGGATTGTATAGCGAACTTAAGGCAGTGAAAATAAGGGCAAGCTTATGGCAATAGGTATGAATGAGTGTGACTTTGCTCTGAGAGCGAATGTTGAAAAGTAATCCTTATACTCAAATTGAAATCATTGTGTGAAAAATGAGGATTTTGTTTTGAAGTGAGAACACTAGTTGCAATACCGAAATTGTTAGCACCTCAGTGAGAAATTGAAGAGGATAGGTGTTAGTGCATGGTGAGTTTGTGTCATGTTCTGATCCCACATAATTCAAGCCTAATAGTGATAGCATGCATAGATTTGATGAGATTAATCGGGATTCATAGCCAAATGATTGCAAAGGATAAAATATGGATACTATTGTACAAAGATTTTGTATTGAGTCATAGTGCGTCGCTTGAGGACAAACAACGAATTTAAGTTGAGGGTGTTGATATAACGTGGTTTCATGTTATAATTAATACTTTTTCCTTAAGTTTAGTGTGTCCAAAAGCCTTTTTGTGCTAATTTTTATATAAGTTTCTTTTTATTTTGCAGGAAATCTGTCCAAAGCTAAATGCGGAGATTTTGAGCGAAAAATGCAGAAGAGAAAACCTAAGGAGCTTATGACGGTCCGTCGTGGTTGTGACGGTCCGTAGGTGGCAGCGTAGTGCAGCAGCTAAAGGAAGATGAGGAAGTCTGACCAAGTGTGGGGTTACGAAGCTTGTGATGGTCCGTCGTGTCTATGACTGTCCGTCCTGCAGGTTTGTCATGAAGTTCAGAGAAGTAATCCCAGTACCCATATTCCAAGAGTTGAAGTATTTTGGAACGAAGACCCTCGACGGACCGTTGTGTCTATGACGGTCCGTCATACCTTCCGTCGAGGGTAATGAAGAAGAGCAGTAGAAGAAATTGCACGAGTATGGGATGACGGAGTCCATGACGGTCCGTCGTGACCATGACGATCCGTCGATCCAGCCGGGTTTTGGCAGATTTCCAACAAATAGAGTCCTTGTTTAATTAGGTTTTTATTTTTTTATAAATAGTTGGAAATCCCTCGTTTTTGAGGTTAGACAATTAGATTGTTAGACTCTGGATCATTGTTAGACTCCGTATTGTTAGACACCTTATTAGTAAACATTATATTGTTAGACTTTTGATTATCATTGATTGTTGGTGATTTTTTGTGATTAATCAAGCAAACTCTCGGATTTTACTCTTTCTCATTGAAGTAAGTACATGAATTCTTATTTAATATATTTGAATATTATGATTATGACTATGAGTAACTAAACTTCATAACTAGGGTTGTGGGAACCATAGGCTAATAATGAGATAAAACCTAACTAAAATAACAATTCTAGAATAGTGTCTTGCATGTATTAATAATTCTTTCGCTTAGAAG</genome_strand>
        <mrna_strand>GGAACGAAGACCCTCGACGGACCGTTGTGCCTACGACGGTCCGTCATACATGCCGTCGAGGGTAATGAAG-AGAGCAGCAAAAGAAATTGCATAAGTATGGGACAACGGAGTCCATGACGGTCTGTCGTGACCACGACGATCCGTCGTGAGGTCCGTCGACCCAGCCGCGTTTTGGCAGATTTCCAGCAAATATAGTCCTTGTTTAATTAGGTTTTTATTTTCTATAAATAGTTCTAAAAACATCATTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGACTCTGGATCATTGTTAGACTCCGTATTGTTAGACATCGTATAAGAAAACATTTTATTGTTAGACTTTTGATTATCATTAATTGTTGGTGATTTTTTGTGATAAATCAAGAAAACTCTCAGATTTTACTCTTTCTCTTTGAATTAAGTACATGAATTCTTATATGATATATTTGAATATTGTGATTATGACTATGGTTAACTAAACTCCATAACTAGGATTGTGGGAACCATAGGAGAATATTGAGGTAAAACCTAACTAAAATAACAATTCTAGAATAGTGTCTTGCATGTATTAATAATTCTTTGGCTCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688267" ref_strand="-" ref_description="SGN-E688267 [t3_tus_11_j02]">
      <seq>ggaacgaagaccctcgacggaccgttgtgcctacgacggtccgtcatacatgccgtcgagggtaatgaagagagcagcaaaagaaattgcataagtatgggacaacggagtccatgacggtctgtcgtgaccacgacgatccgtcgtgaggtccgtcgacccagccgcgttttggcagatttccagcaaatatagtccttgtttaattaggtttttattttctataaatagttctaaaaacatcatttttgaggtaagactctggatcattgttagactccgtattgttagacatcgtataagaaaacattttattgttagacttttgattatcattaattgttggtgattttttgtgataaatcaagaaaactctcagattttactctttctctttgaattaagtacatgaattcttatatgatatatttgaatattgtgattatgactatggttaactaaactccataactaggattgtgggaaccataggagaatattgaggtaaaacctaactaaaataacaattctagaatagtgtcttgcatgtattaataattctttggctcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0012M01.2" temp_strand="-" temp_description="C00HBa0012M01.2  CU915724.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0012M01 sequenced_by:sanger upload_account_name:uk">
        <position start="51375" stop="40551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51075" g_stop="50822" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50821" i_stop="41172" i_length="9650">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41171" g_stop="40851" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="574" r_length="321" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0012M01.2" gen_strand="-" ref_id="SGN-E688267" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0012M01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688267" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51075" e_stop="50822"/>
          <exon e_start="41171" e_stop="40851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACGAAGACCCTCGACAGACCGTTGTGCCTATGACGGTCCGTCAAACTTGCCGTCGAGGGTAATGAAGAAGAGAAGCATAAGAAATTGAACAACTTTGGGACGATGGAGTCCATGACGGTCCGTCATGACCATGACGATCCGTCGCGAGGTCCGTCGACCCAGCCGCATTTTGGCAGACTTCCAGCAAATAGAGTACTTGTTTAATTAGGTTTTTATTTTTTATAAATAGTTCGAAAAACCACGTTTTTGAGGTTCGACTCTTAGACTTTCAGACTCTGGATCATTGTTAGACTCCGTATTATTAGACACCGTATTAGTAAACATTGTATTGTTAGACTTTAGATTATCATTGATTGTTGGTGATTTTCGGTGATTAATCAACCAAACTCTCGAATTTTACTCTTTCTCATTGAATTAAGTACATGAATTTTCTTATTCAATATATTTGAATATTGTGATTATGACTATGAGTAACTAAACTCCATAACTAGGGTTGTGGGAACCATAGGCAAATAATGAGATAAAACCCAACTAAAATAACAATTCTAGAATAGTGTCTTGAATGTATTAATAATTCTTTCGCTTAGAAGTCTTTTTAACGGATGGCCAACGTTAGAAGTCGCCTTAATGCTACTTGCCGGACAAAGGAGGTAGATAATAGGAACCAAATTATTAACATAGATTTAGTGTATACTATCTAATAGGCTAGTAATAATTGGTACGAGGTAATAACTTAGTCAAATATTGAATACGATGCTTAATATGAGGTAAAGATAAGGGTTAGTAAAGCAACACACATAGCCGGACCAAGGTGCGGAGTGAGATTTTCTAGATGCCCGACTAAGGATTTAGAAATACGTAACTTGTCACTTTGTATGCAAGATACTAGGAAAGAATTGTTATAGTTAGAATTATCAAGTTATGAACCTGTAGGGAACACGTAAACCCTAGTTACTTTGATTAATTGATTAAAAATCCAACTTTCAAAGCTGTTAAGTGTCTCTTTTAATTTTGTTAGTTATTTTTACTCATTTAGAAATAGAAACCCCCCTTTTTATTGTTTTACTTTCCAAGGAAGTCATTGACCAAACAATAGTAATAACAGGTTGAAGTTAAGTCTAGACTATTTTCCTCGTGGGAACGATCCCAAACTCACTAGTTGGGTTATTTACTTGACACGACCGCTTTACTTCTTATTTGAGAAGTAAGTTTGAGCGTATCAAATTTTGGCGTCGTTGCCGGGGATTACAACTTTTAGATTAACTTGAACTTATTACTATAGTTTAGTTGATATTTTCTTTATTTTACTTTGTTTTATTGTTTTTGATTTTTTTTAGACTATCCTCCTTGTATGCCAAATACACGGAGAGAAAGAGAACCCATGTTTCCCCACGATCACGAGTTAGAGCGTACACTATGAAATATGAATCGAAACTTGGGAATAAATGATGATGATCTGAACTAGAACATCCCAGCTCCGGTTGATGTTCATGGTCATATGTTACCCGATGCTCCGGGTGAACACCAACAGAGGGGACAAAATCCCATTCCACGGCCCCAAGCATACTACAGAGGCTATGATAACATAGCAGACTCGGATGGGCCACTTGTCTTGCCTCCTCTACCCACAAGACACACCTTTGTGGTAACTAGTAGCCTGATGCAAATGCTCACTGCCAGAGGTTTGTTTTTAGGGCTACCTTCTAAGGATCCACATTACTATATAGCTAAGGTAAGGGCAGTGTGTAAAATCTGTGTAGGGAGGCCTGATTTGGATTTAGATGTAATAGGTCTCAGAGTGTTTCCTCTCTCACTGGCGGGAGAGGCTGCTATGTGGTTCACTGAGCTCCCATACAACTCAATCTTCACTTGTAACCAACTAAGGGATGTCTTCTTAGAACGCTACGATCTGGTCTCAATGAAACTAAACCACAAAGACAGAGTGAATAACTTTGTAGCACTACCGGGAGAGTCGGTTAGTAGTTCTTGGGATAGATTCACCTCATTCTTGAGAAGTTTTCCAAATCACCGTATAGATGATGAGTCACTAAAGGAATACTTCTATCGGGGACAGGATGATAACAATAAAGCGGTGTTGGACACTATAGCAGGTGGATCTTATGGGGAGTGTCCTTATGCTGAGATCACTGAAAAATTAGAGAAAATCTCCCGGAATAACAAAGCTTGGAGTACTAGGAAGTCTGATACAGAGAGAAACACATTCGTAGTGCAGTCCACTCACAACCCAGCAACAGATGAGATTCGTGAAGAAATGGCTCAGATGAGAACCGAGCATGGGTTGGTACTAAAACATGACACTGGGGGTGCAGAAAAGATAAATGCAGTCAACTACTTGGATAAACCACTACCTACTAATGATGAATGCTATTATGCGCTGGACACTTATGCAGTAAACGAGCAGACGGGGGGTTTCCGACCAAGCGCCCAAGGCTCAAATCAGGATAACTGGCGCCAAGGTCGGAACTATGGTAACTACAACTGTGAGGGTCATTATGTCCGAGATGGAAAATACAACCGCGACAACAACTTTAACAGGTGTAACTATGCTAATAAAAACGACAGGAATGGGCCCTATGTCCCTCCTCAAAATCGTGTAGTTACTCCTAGGGATGGTGGAGATAGTATAGAGCGAGTTGAGGATATGTTGCACAAAATGATGAGGAGATTCGATGCTAGTGATGAGCACATTAAAGAGTTGAGGTGTGATTTAGCTAGTATTGGGCAAAAAGTTTATACACATGCAATTTCGATTAAGAAGATCGAGTTGCAAATGGCGCAATTATCTACGACAGTGAACACATGGCAACCGGGCACTCTTCCTAGCAACACTTTCCAAAATCCAAAGAATGATGCGCATTGTATGGAAATCACTACTCGGGGTGGTAAGCAAACCATTGACCCACCTATGACGTCTACTGAGGAAAATGTGAGAAAGGATAATGATAATGTGGTAAAGGGTAGTGGTGAAGCAGAGGAAAGTAATGGAAAAGATGCAGAAGTACCTATGAGGTTAATTCCCATGCCTAGGCCACCACCACCTTTCCCTCAGAGATTAGTGAAAAAGACCGATGATAGTAAATACCGTCATTTCATAACAATGTTGAAGCAGCTTTCAATCAATGTCCCTTTGGTAGAACTCTAGAACAAATGCCCGGTTATGCCAAATTTATGAAAGATCTGGTCACCAAGAAAAGATCGGTCACTTTTGAGGATGATGATAGACTACAACATTGTAGTGCTATTGCTACAAGATCCCTCGTACAAAAGAAAGAAGATCCGGATGCGTTCACTATTCCTTGTACAGTAGGGTCATTACATTTTGTGAAAGCATTATATAATCTGGGGGCAAGCATAAATCTCATGCCCCTCTCAATTTACAAGAAGTTGGGTTTGGGGGATCCAAAACCCACTGCGATGCGGCTACTGATGGCTGATCGGACAGTGAAACGGCCTATAGGGATACTCCATGATGTGCTAGTAAAAGTAGAGTCATTCATCTTTCTGGCTAATTTTGTTATTCTTGATTGTGAGGTCGATTGTGAACTGCCTATTATTCTTGGGAGGACATTCCTTGCTACAGTTAGAGCCTTAGTTGATATGGAGAAGGGGCAGATGAAATTTTGGTTGAACAATGAAGAAGCGACCTTCAACGTTTGTAGGACCATGAGGCAGAGTGGTGAGCTCCAATCGGTATCAGCCATATCCCACAAAGAAAAGATGAAGAAAAAGAATGAAGAAAAAAGTGCAAAACAAGAGTTTATGGCTGGGGATTTGGTGCTTGTAGACAGTTCTGGGGTGCCTTGTCTTCCGAGAAAGCTCAAGTCCAAATGGACTGGCCCTTACTTGATTACCCAAGTATTCCCTCATGGAACAGTTGAGTTAAAAGCCAAGGAGGAAGTGCGGTTTGAGGTTAATAGAGAACGAACAAAACTCTATTTTGGGCATAAAGCATCGGGGAATAAAGTAAAAGAGGCAAACCATCTTGATGAAGGCTGAGTAATCAAGTGTCCCCGGTCGTGCCACGACATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATAGTCTTTTTAGTAATGGTAGCATTTTTCTACTAATGGGTTTTTAAATTTGCAGGCACATCACCAGGAAATTCTGTAGAAAATTACTCTGCAGCAGCCACTGACGGATACATCGACGGACCATTGCGCCTGCGACGGACCGTCGTATGCCTCCTACATACCACGTACATTTTCCTGTTATTTTCAAACTAGGGCACACACGACGGACCCAATGACGGTTCGTCACAACTGAGACGGACCGTCGTCGGGGAGTCATTGAGTCATTAATGAGTCGTACCCGACCCGACCCGGCTAGAGTCTTTTTCAAAATCAGACCGTTTAAACCCCCCCCCCCAACCCCTCAGTTCACCCCATTCCTTCATTTTACCTCCCATTTCCCTCTCTTTTCAACTTCCACATTCTCTCCCTCGATCATTGTTCCCCCAAAATTCTCCAAAGCCCTAGAAGTTATCATTTACTAGTCGTAGTTGCTGCTTTGGGTGTTTTCTTGGTCACCGAGTACTTTCCCATATTGTTTTTCTCCAATTCTAAGGTATGTGTCTCTAATTTATACTCATTTATCTTGCATTTTTGTTTATTAATTAGTATTAGCTTAGTTCTTCGTCATATGTTCGTTTCTTGTATATAAGATTCTGTCTAACCTAGGTTAAAATGTTGGAAATTGCCATGTTTACAACCCTAGACATAGGTGCTTTCACATTACTAGTTTCCTAGGTAGTTGGGTTAGACAAATGTAGGTCCAAAACACTACAAGTCGGGGATGCATGGGGTACCCCCAGCTCTATCACTGATCTACAGAACAAGACCTTGATGAAGGACCGTCTTGCCCACGACGGACCATCATAGGGTCCGTTCCAAAAGCCCTAACACCCCATTGTCCATCTTTTTAGTGTCCTTCAACGGACACATTTGATGGACCGTCATACCCACGACGGTCCATCCTGCACAACCCTTCTGGTTGTCAGAGACCCTGTTTCTAAGGGTCTCTCATTTTTTTTCTAAGTGTCCCCCAACGGACACATGTGACGGAACCGTTCTGGTTGTCAGAGACCCTGTTTCTAAGGGTCTCTCACTTTTTCTAAGTGTCCTTCAATGGACACATGTGACGGACGGTCATGCCCACAACGGTCTGTCCTGCATGACCGTCATGAGGGTCAGTGACCCCTCTCCTAAGGGTCTCCATAATTTTTTCCAAGTGTCCTACGACCGACACCTACGACGGACCGTTGTACCTGTGACGGTCCGTCCTGCACATACCGTCATACTAGTTAGAGACTCTCCTTCAGGGTTCTCCATATATACATAGTCTAAGTAATACACGACGGACCCCATGACGGTCTGTCATAGCCACGACGAGTCGTCACCAGGCTCGTCATGTGTCACTGTTACCATAGAAATGACATACAATTTTAATTTTTTGGGTACTTCTTACTTGTCTTGTTTGCCACTACTCGTACTAATATTGATCCTTTACAGGTACTATCTACTATGAAACCCAAGAAAGATCAAATCTATGCACGCGGGCGATCGAAGTCTGTCGCCCCGTCTACCCACATGGTCATTGGCTTTGATGATGAGCGTGACCCCAAGTATGTGCCCCCAGGCACTTCCACCCCTTCCAGTGCTGCACGTGCTCCCAGAGCCACACCCAAAAAGGTGGCGTCCAGCGTAGTCACTGCCTCCAAGTCTGATGAAGAGCGCACACAGACCGGCACACCCTCTGAGTCAGCAACAAATGAAGAAGGAGTGTCTGCCTTCTTAGGAGTATCTTGGTCGGAGGAAGCCTCCGGCTCTGCTGAGGTTCCCGCACCCGCCACCGCTGCAGCGTCGGCCTCATCTGATGAGGCTGACAGTTTTGAATCCACATCAGGCTCACCAGCTCAGGTCCCCACCCCATCCACTGACCAGCCCAACCGATGGTGTGTCGACGGGCAATTTCAAGTCTATTCCGATGCCAAGTTCCTGATTGATAATGGATTAATGACTCGAACACTCACCTTGGAGCGGCGGGTCCTTACAGGGAGTCTCCCGATGATACCTGAGATCCACAATGTGTTCACCAGACATCGCTTGGAGTGGACAGCATGTGCGTTGGGACGTTACAGTGAATAAATGGTTCGAGACGCATCCTACGTAGCGACTCTCCGATCAAAGATAGATGGCGGGCTGCCCGCGCTAAACAGGCTCCACTGGAGCAGGTCCGAGTACAGGGCGTACAGGTTGACATTTCCCTGCCTGCATCCGCCGGTTTCTATACGGCGAGGGTGTTTATGCTACTCGGACCCCTCTCACTGCCGAGTTTGAATACCGCTGGAAGATAGTGAAAGATGGCCAGTTCCTGCGTGATCCATCACTGAGAGAGACCACCACAAGGTGGATGGCCCTGCACCTGTCAGTTGATGGAGAGGGTGCCGACTGGGTGACTGAGCCAAAGGGGGCCATCAAGAAGGCCAACCTCACTTTCACGGCGAAGTTCTTGTGGTTGCTTGTCCATCATTGCCTTTCCCCCAGAGCTGCTGATAGTATCGTTACATGGGATCGAGCAGTGTTGATGGCGGCGATGATAGCTGGGTTCGAGGTGGACTTCGCGTGGCTTCTACAGAAAGTCATGCACGAGAGGGCATTCAAGGTCACTACTACTTACCCTTTCCCGTGCATGATCTTTGCTCTCTGCAGGTCCGCAGGTGTGCCTTTATGGCACGTAGATCAGCTCAAGACCCCGCAGGGCACTGTTGACGTCGGCCTCATTAGAGATGAGGCCAATGAGTTGGCTCCACGCAGAGGGCCCTGTCCAGAGCTTCCCCCACTTGCTGATGATCTTGATGATACGGTAGCCCAGGCCCGCACGGCTACACAGGCGGCGTCCACTGACACTACCCCGGTCGAGTCTATCCCGGTTAGTAGCCATGATCCGAGCTATTCTCGCACAGCCCCTCTACCAGCACTGGTCCAGCTTTCTAGAGTCCAAAAATTAGAGGCGCAGATGTCTACACTTTTGCATCATATCCAGCCGTGGATGCAAAAGTCTATTACTGAGTCAGAAGAGCGCCTAGAGTGAAAAATGGTCCAGTTTACAGGGCGGAAGATTTCTGAGGTTCACCGGCACTTGGACGCCTTTGAGTTGAGGGTGCTAGCTCGGCCAGCCCCTCTAGTGGATGTGTTGAATCTTCAGGATGCGGTCGATAGCCTTCACACAGATATTGACACGATCTTAGAGGCTAGGGTGCCGGAGTCTGAGGCCCCTTCTGTCGATCCTGCTGAAGACACAGTGTTGGCGGCCCTATTTGCCACTTCAGAGATTCCACCACCTCCCCCTCGAGAGCATGCCAAGAGGCGTAGGGGCCGAGCAGAGGATGAGGCGTGAGCACAGAAGAAGGAGCACCGAGAGATGGAGGCTGCGAGGAGAGCCTCACTTGCTGAGGAGGAGGCGCACCAGATGAGAGCATCAGAGTTAGCGGCTGGGGCATCTAGCTCCCGAACTGTGGAGATAGCAGGAGGCACTACTGATAGTGCGGTTGTGGCTGAGGACAACAGTGAGGGTATCCAGATTGCAGAGGACGTGGGTTCCGGGGAATTGGACTCACCAGCTTGCTGATTGACGGCGCTTTGCGCTACAGGTTTGCTTCACCTACAACTCTAGTATTTAACTTTTTATGCATTGGGGACAATTTCATGTTTTTTGGTTGGGGGTGGGGTAAATGGAAAGTGAGTGTTAGGGTGAAGTCTGAGTAGCCCAATTCACTATCCTCTTTTGGGGTTTTCTTGCCTGTGTTCTTTTTCCCCAAAAGACTGATTACTTTTTCTGTTGAACCGGCATGTTTATATTTTTTGTACATTGTTTAATTCTGGAGCATGATGGTTAAAATGATATAATGATAAACTGGAAAATGATGCATGACTAGGCATAGTAACTTATAATTATGTAGCTCTAAGCGTGACATAGAGTTACACTATTGCATTACCCTAAGTCTTAAATTCGAACTAGGTGTATGATAATCTGGTATAGTGATGAGATGTCAAGTGAGTGTGTGGAAAATTCGAATAAGTCCACTATTGGTACTGAGCTAGAACTTGCCTGGTTAGTCCTGCTAAAAGTAAGCTGTAATAGAAAATTGGGAAAGGATCATAGGCCTTTATTCAATATAGCCCAGCTTTAGCCTAAATAGAAAAAAACCAAATGAAATTTATCCTTCTTTGATCCAAATCATCTGAGCATAAAATAGACCTTTCTTTTTCACCCCCAACTTATCTTTTCTAGGAACAATGTGTTGGCCCTGGTCCCTCCTTAGACATGTGCACCTTAGCTTATGCCAAAAGCATAAGTTGAGGGTGGCTAATGCAGTAAACAACCTTCGTTATGGCCCTGACCCAACTTTGGGTATTGTGTACCTTGACTCATGGCAAAGCCATGAGTTGAGGGTGGCTATTATGAGGAATGCTCTGGAAAGTGGGTTGAAAGAACAAAGAGAGAGAAAGAACAAAAGTAAAGTGACTCAAGAATTAGTTGAAAGAAAAGTAAAGAAAAAGAAAAATATACAAGAAATACAAGCAAGAAAAGAAAAGAGCCACTTACATAAATAAAGAAAGAAGAGAAAATAGCAAGGTGAAAGAATATGAGAAACTGGGCAAGATAAAATGATAGAAAGTGGAAGGTTTAGCCGATATGTCAAGGAGGGAAAAAAGTCACTAAGTATACCTAAATATACCCTACCTGACCCTGAGCCTATGTTACAAGCCAAGAAAGTCCTATCGTGATCCTAAGGATTGTATAGCGAACTTAAGGCAGTGAAAATAAGGGCAAGCTTATGGCAATAGGTATGAATGAGTGTGACTTTGCTCTGAGAGCGAATGTTGAAAAGTAATCCTTATACTCAAATTGAAATCATTGTGTGAAAAATGAGGATTTTGTTTTGAAGTGAGAACACTAGTTGCAATACCGAAATTGTTAGCACCTCAGTGAGAAATTGAAGAGGATAGGTGTTAGTGCATGGTGAGTTTGTGTCATGTTCTGATCCCACATAATTCAAGCCTAATAGTGATAGCATGCATAGATTTGATGAGATTAATCGGGATTCATAGCCAAATGATTGCAAAGGATAAAATATGGATACTATTGTACAAAGATTTTGTATTGAGTCATAGTGCGTCGCTTGAGGACAAACAACGAATTTAAGTTGAGGGTGTTGATATAACGTGGTTTCATGTTATAATTAATACTTTTTCCTTAAGTTTAGTGTGTCCAAAAGCCTTTTTGTGCTAATTTTTATATAAGTTTCTTTTTATTTTGCAGGAAATCTGTCCAAAGCTAAATGCGGAGATTTTGAGCGAAAAATGCAGAAGAGAAAACCTAAGGAGCTTATGACGGTCCGTCGTGGTTGTGACGGTCCGTAGGTGGCAGCGTAGTGCAGCAGCTAAAGGAAGATGAGGAAGTCTGACCAAGTGTGGGGTTACGAAGCTTGTGATGGTCCGTCGTGTCTATGACTGTCCGTCCTGCAGGTTTGTCATGAAGTTCAGAGAAGTAATCCCAGTACCCATATTCCAAGAGTTGAAGTATTTTGGAACGAAGACCCTCGACGGACCGTTGTGTCTATGACGGTCCGTCATACCTTCCGTCGAGGGTAATGAAGAAGAGCAGTAGAAGAAATTGCACGAGTATGGGATGACGGAGTCCATGACGGTCCGTCGTGACCATGACGATCCGTCGATCCAGCCGGGTTTTGGCAGATTTCCAACAAATAGAGTCCTTGTTTAATTAGGTTTTTATTTTTTTATAAATAGTTGGAAATCCCTCGTTTTTGAGGTTAGACAATTAGATTGTTAGACTCTGGATCATTGTTAGACTCCGTATTGTTAGACACCTTATTAGTAAACATTATATTGTTAGACTTTTGATTATCATTGATTGTTGGTGATTTTTTGTGATTAATCAAGCAAACTCTCGGATTTTACTCTTTCTCATTGAAGTAAGTACATGAATTCTTATTTAATATATTTGAATATTATGATTATGACTATGAGTAACTAAACTTCATAACTAGGGTTGTGGGAACCATAGGCTAATAATGAGATAAAACCTAACTAAAATAACAATTCTAGAATAGTGTCTTGCATGTATTAATAATTCTTTCGCTTAGAAG</genome_strand>
        <mrna_strand>GGAACGAAGACCCTCGACGGACCGTTGTGCCTACGACGGTCCGTCATACATGCCGTCGAGGGTAATGAAG-AGAGCAGCAAAAGAAATTGCATAAGTATGGGACAACGGAGTCCATGACGGTCTGTCGTGACCACGACGATCCGTCGTGAGGTCCGTCGACCCAGCCGCGTTTTGGCAGATTTCCAGCAAATATAGTCCTTGTTTAATTAGGTTTTTATTTTCTATAAATAGTTCTAAAAACATCATTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGACTCTGGATCATTGTTAGACTCCGTATTGTTAGACATCGTATAAGAAAACATTTTATTGTTAGACTTTTGATTATCATTAATTGTTGGTGATTTTTTGTGATAAATCAAGAAAACTCTCAGATTTTACTCTTTCTCTTTGAATTAAGTACATGAATTCTTATATGATATATTTGAATATTGTGATTATGACTATGGTTAACTAAACTCCATAACTAGGATTGTGGGAACCATAGGAGAATATTGAGGTAAAACCTAACTAAAATAACAATTCTAGAATAGTGTCTTGCATGTATTAATAATTCTTTGGCTCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273427" ref_strand="+" ref_description="SGN-E273427 [cLEN-3-M4]">
      <seq>ttttgagccaaagaattattaatacatgcaagacactattctagaattgttattttagttaggttttacctcaatattctcctatggttcccacaatcctagttatggagtttagttaaccatagtcataatcacaatattcaaatatatcatataagaattcatgtacttaattcaaagagaaagagtaaaatctgagagttttcttgatttatcacaaaaaatcaccaacaattaatgataatcaaaagtctaacaataaaatgttttcttatacgatgtctaacaatacggagtctaacaatgatccagagtcttacctcaaaaatgatgtttttagaactatttatagaaaataaaaacctaattaaacaaggactatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0012M01.2" temp_strand="+" temp_description="C00HBa0012M01.2  CU915724.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0012M01 sequenced_by:sanger upload_account_name:uk">
        <position start="40552" stop="51186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40852" g_stop="41180" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41181" i_stop="50830" i_length="9650">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50831" g_stop="50886" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="385" r_length="56" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0012M01.2" gen_strand="+" ref_id="SGN-E273427" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0012M01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40852" e_stop="41180"/>
          <exon e_start="50831" e_stop="50886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGCGAAAGAATTATTAATACATGCAAGACACTATTCTAGAATTGTTATTTTAGTTAGGTTTTATCTCATTATTAGCCTATGGTTCCCACAACCCTAGTTATGAAGTTTAGTTACTCATAGTCATAATCATAATATTCAAATATATTAAATAAGAATTCATGTACTTACTTCAATGAGAAAGAGTAAAATCCGAGAGTTTGCTTGATTAATCACAAAAAATCACCAACAATCAATGATAATCAAAAGTCTAACAATATAATGTTTACTAATAAGGTGTCTAACAATACGGAGTCTAACAATGATCCAGAGTCTAACAATCTAATTGTCTAACCTCAAAAACGAGGGATTTCCAACTATTTATAAAAAAATAAAAACCTAATTAAACAAGGACTCTATTTGTTGGAAATCTGCCAAAACCCGGCTGGATCGACGGATCGTCATGGTCACGACGGACCGTCATGGACTCCGTCATCCCATACTCGTGCAATTTCTTCTACTGCTCTTCTTCATTACCCTCGACGGAAGGTATGACGGACCGTCATAGACACAACGGTCCGTCGAGGGTCTTCGTTCCAAAATACTTCAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACAAACCTGCAGGACGGACAGTCATAGACACGACGGACCATCACAAGCTTCGTAACCCCACACTTGGTCAGACTTCCTCATCTTCCTTTAGCTGCTGCACTACGCTGCCACCTACGGACCGTCACAACCACGACGGACCGTCATAAGCTCCTTAGGTTTTCTCTTCTGCATTTTTCGCTCAAAATCTCCGCATTTAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATTATAACATGAAACCACGTTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCAATACAAAATCTTTGTACAATAGTATCCATATTTTATCCTTTGCAATCATTTGGCTATGAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTATGTGGGATCAGAACATGACACAAACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACTGAGGTGCTAACAATTTCGGTATTGCAACTAGTGTTCTCACTTCAAAACAAAATCCTCATTTTTCACACAATGATTTCAATTTGAGTATAAGGATTACTTTTCAACATTCGCTCTCAGAGCAAAGTCACACTCATTCATACCTATTGCCATAAGCTTGCCCTTATTTTCACTGCCTTAAGTTCGCTATACAATCCTTAGGATCACGATAGGACTTTCTTGGCTTGTAACATAGGCTCAGGGTCAGGTAGGGTATATTTAGGTATACTTAGTGACTTTTTTCCCTCCTTGACATATCGGCTAAACCTTCCACTTTCTATCATTTTATCTTGCCCAGTTTCTCATATTCTTTCACCTTGCTATTTTCTCTTCTTTCTTTATTTATGTAAGTGGCTCTTTTCTTTTCTTGCTTGTATTTCTTGTATATTTTTCTTTTTCTTTACTTTTCTTTCAACTAATTCTTGAGTCACTTTACTTTTGTTCTTTCTCTCTCTTTGTTCTTTCAACCCACTTTCCAGAGCATTCCTCATAATAGCCACCCTCAACTCATGGCTTTGCCATGAGTCAAGGTACACAATACCCAAAGTTGGGTCAGGGCCATAACGAAGGTTGTTTACTGCATTAGCCACCCTCAACTTATGCTTTTGGCATAAGCTAAGGTGCACATGTCTAAGGAGGGACCAGGGCCAACACATTGTTCCTAGAAAAGATAAGTTGGGGGTGAAAAAGAAAGGTCTATTTTATGCTCAGATGATTTGGATCAAAGAAGGATAAATTTCATTTGGTTTTTTTCTATTTAGGCTAAAGCTGGGCTATATTGAATAAAGGCCTATGATCCTTTCCCAATTTTCTATTACAGCTTACTTTTAGCAGGACTAACCAGGCAAGTTCTAGCTCAGTACCAATAGTGGACTTATTCGAATTTTCCACACACTCACTTGACATCTCATCACTATACCAGATTATCATACACCTAGTTCGAATTTAAGACTTAGGGTAATGCAATAGTGTAACTCTATGTCACGCTTAGAGCTACATAATTATAAGTTACTATGCCTAGTCATGCATCATTTTCCAGTTTATCATTATATCATTTTAACCATCATGCTCCAGAATTAAACAATGTACAAAAAATATAAACATGCCGGTTCAACAGAAAAAGTAATCAGTCTTTTGGGGAAAAAGAACACAGGCAAGAAAACCCCAAAAGAGGATAGTGAATTGGGCTACTCAGACTTCACCCTAACACTCACTTTCCATTTACCCCACCCCCAACCAAAAAACATGAAATTGTCCCCAATGCATAAAAAGTTAAATACTAGAGTTGTAGGTGAAGCAAACCTGTAGCGCAAAGCGCCGTCAATCAGCAAGCTGGTGAGTCCAATTCCCCGGAACCCACGTCCTCTGCAATCTGGATACCCTCACTGTTGTCCTCAGCCACAACCGCACTATCAGTAGTGCCTCCTGCTATCTCCACAGTTCGGGAGCTAGATGCCCCAGCCGCTAACTCTGATGCTCTCATCTGGTGCGCCTCCTCCTCAGCAAGTGAGGCTCTCCTCGCAGCCTCCATCTCTCGGTGCTCCTTCTTCTGTGCTCACGCCTCATCCTCTGCTCGGCCCCTACGCCTCTTGGCATGCTCTCGAGGGGGAGGTGGTGGAATCTCTGAAGTGGCAAATAGGGCCGCCAACACTGTGTCTTCAGCAGGATCGACAGAAGGGGCCTCAGACTCCGGCACCCTAGCCTCTAAGATCGTGTCAATATCTGTGTGAAGGCTATCGACCGCATCCTGAAGATTCAACACATCCACTAGAGGGGCTGGCCGAGCTAGCACCCTCAACTCAAAGGCGTCCAAGTGCCGGTGAACCTCAGAAATCTTCCGCCCTGTAAACTGGACCATTTTTCACTCTAGGCGCTCTTCTGACTCAGTAATAGACTTTTGCATCCACGGCTGGATATGATGCAAAAGTGTAGACATCTGCGCCTCTAATTTTTGGACTCTAGAAAGCTGGACCAGTGCTGGTAGAGGGGCTGTGCGAGAATAGCTCGGATCATGGCTACTAACCGGGATAGACTCGACCGGGGTAGTGTCAGTGGACGCCGCCTGTGTAGCCGTGCGGGCCTGGGCTACCGTATCATCAAGATCATCAGCAAGTGGGGGAAGCTCTGGACAGGGCCCTCTGCGTGGAGCCAACTCATTGGCCTCATCTCTAATGAGGCCGACGTCAACAGTGCCCTGCGGGGTCTTGAGCTGATCTACGTGCCATAAAGGCACACCTGCGGACCTGCAGAGAGCAAAGATCATGCACGGGAAAGGGTAAGTAGTAGTGACCTTGAATGCCCTCTCGTGCATGACTTTCTGTAGAAGCCACGCGAAGTCCACCTCGAACCCAGCTATCATCGCCGCCATCAACACTGCTCGATCCCATGTAACGATACTATCAGCAGCTCTGGGGGAAAGGCAATGATGGACAAGCAACCACAAGAACTTCGCCGTGAAAGTGAGGTTGGCCTTCTTGATGGCCCCCTTTGGCTCAGTCACCCAGTCGGCACCCTCTCCATCAACTGACAGGTGCAGGGCCATCCACCTTGTGGTGGTCTCTCTCAGTGATGGATCACGCAGGAACTGGCCATCTTTCACTATCTTCCAGCGGTATTCAAACTCGGCAGTGAGAGGGGTCCGAGTAGCATAAACACCCTCGCCGTATAGAAACCGGCGGATGCAGGCAGGGAAATGTCAACCTGTACGCCCTGTACTCGGACCTGCTCCAGTGGAGCCTGTTTAGCGCGGGCAGCCCGCCATCTATCTTTGATCGGAGAGTCGCTACGTAGGATGCGTCTCGAACCATTTATTCACTGTAACGTCCCAACGCACATGCTGTCCACTCCAAGCGATGTCTGGTGAACACATTGTGGATCTCAGGTATCATCGGGAGACTCCCTGTAAGGACCCGCCGCTCCAAGGTGAGTGTTCGAGTCATTAATCCATTATCAATCAGGAACTTGGCATCGGAATAGACTTGAAATTGCCCGTCGACACACCATCGGTTGGGCTGGTCAGTGGATGGGGTGGGGACCTGAGCTGGTGAGCCTGATGTGGATTCAAAACTGTCAGCCTCATCAGATGAGGCCGACGCTGCAGCGGTGGCGGGTGCGGGAACCTCAGCAGAGCCGGAGGCTTCCTCCGACCAAGATACTCCTAAGAAGGCAGACACTCCTTCTTCATTTGTTGCTGACTCAGAGGGTGTGCCGGTCTGTGTGCGCTCTTCATCAGACTTGGAGGCAGTGACTACGCTGGACGCCACCTTTTTGGGTGTGGCTCTGGGAGCACGTGCAGCACTGGAAGGGGTGGAAGTGCCTGGGGGCACATACTTGGGGTCACGCTCATCATCAAAGCCAATGACCATGTGGGTAGACGGGGCGACAGACTTCGATCGCCCGCGTGCATAGATTTGATCTTTCTTGGGTTTCATAGTAGATAGTACCTGTAAAGGATCAATATTAGTACGAGTAGTGGCAAACAAGACAAGTAAGAAGTACCCAAAAAATTAAAATTGTATGTCATTTCTATGGTAACAGTGACACATGACGAGCCTGGTGACGACTCGTCGTGGCTATGACAGACCGTCATGGGGTCCGTCGTGTATTACTTAGACTATGTATATATGGAGAACCCTGAAGGAGAGTCTCTAACTAGTATGACGGTATGTGCAGGACGGACCGTCACAGGTACAACGGTCCGTCGTAGGTGTCGGTCGTAGGACACTTGGAAAAAATTATGGAGACCCTTAGGAGAGGGGTCACTGACCCTCATGACGGTCATGCAGGACAGACCGTTGTGGGCATGACCGTCCGTCACATGTGTCCATTGAAGGACACTTAGAAAAAGTGAGAGACCCTTAGAAACAGGGTCTCTGACAACCAGAACGGTTCCGTCACATGTGTCCGTTGGGGGACACTTAGAAAAAAAATGAGAGACCCTTAGAAACAGGGTCTCTGACAACCAGAAGGGTTGTGCAGGATGGACCGTCGTGGGTATGACGGTCCATCAAATGTGTCCGTTGAAGGACACTAAAAAGATGGACAATGGGGTGTTAGGGCTTTTGGAACGGACCCTATGATGGTCCGTCGTGGGCAAGACGGTCCTTCATCAAGGTCTTGTTCTGTAGATCAGTGATAGAGCTGGGGGTACCCCATGCATCCCCGACTTGTAGTGTTTTGGACCTACATTTGTCTAACCCAACTACCTAGGAAACTAGTAATGTGAAAGCACCTATGTCTAGGGTTGTAAACATGGCAATTTCCAACATTTTAACCTAGGTTAGACAGAATCTTATATACAAGAAACGAACATATGACGAAGAACTAAGCTAATACTAATTAATAAACAAAAATGCAAGATAAATGAGTATAAATTAGAGACACATACCTTAGAATTGGAGAAAAACAATATGGGAAAGTACTCGGTGACCAAGAAAACACCCAAAGCAGCAACTACGACTAGTAAATGATAACTTCTAGGGCTTTGGAGAATTTTGGGGGAACAATGATCGAGGGAGAGAATGTGGAAGTTGAAAAGAGAGGGAAATGGGAGGTAAAATGAAGGAATGGGGTGAACTGAGGGGTTGGGGGGGGGGGTTTAAACGGTCTGATTTTGAAAAAGACTCTAGCCGGGTCGGGTCGGGTACGACTCATTAATGACTCAATGACTCCCCGACGACGGTCCGTCTCAGTTGTGACGAACCGTCATTGGGTCCGTCGTGTGTGCCCTAGTTTGAAAATAACAGGAAAATGTACGTGGTATGTAGGAGGCATACGACGGTCCGTCGCAGGCGCAATGGTCCGTCGATGTATCCGTCAGTGGCTGCTGCAGAGTAATTTTCTACAGAATTTCCTGGTGATGTGCCTGCAAATTTAAAAACCCATTAGTAGAAAAATGCTACCATTACTAAAAAGACTATAAGTATTGGGTTGCCTCCCAACAAGCGCCTGATTTAATGTCGTGGCACGACCGGGGACACTTGATTACTCAGCCTTCATCAAGATGGTTTGCCTCTTTTACTTTATTCCCCGATGCTTTATGCCCAAAATAGAGTTTTGTTCGTTCTCTATTAACCTCAAACCGCACTTCCTCCTTGGCTTTTAACTCAACTGTTCCATGAGGGAATACTTGGGTAATCAAGTAAGGGCCAGTCCATTTGGACTTGAGCTTTCTCGGAAGACAAGGCACCCCAGAACTGTCTACAAGCACCAAATCCCCAGCCATAAACTCTTGTTTTGCACTTTTTTCTTCATTCTTTTTCTTCATCTTTTCTTTGTGGGATATGGCTGATACCGATTGGAGCTCACCACTCTGCCTCATGGTCCTACAAACGTTGAAGGTCGCTTCTTCATTGTTCAACCAAAATTTCATCTGCCCCTTCTCCATATCAACTAAGGCTCTAACTGTAGCAAGGAATGTCCTCCCAAGAATAATAGGCAGTTCACAATCGACCTCACAATCAAGAATAACAAAATTAGCCAGAAAGATGAATGACTCTACTTTTACTAGCACATCATGGAGTATCCCTATAGGCCGTTTCACTGTCCGATCAGCCATCAGTAGCCGCATCGCAGTGGGTTTTGGATCCCCCAAACCCAACTTCTTGTAAATTGAGAGGGGCATGAGATTTATGCTTGCCCCCAGATTATATAATGCTTTCACAAAATGTAATGACCCTACTGTACAAGGAATAGTGAACGCATCCGGATCTTCTTTCTTTTGTACGAGGGATCTTGTAGCAATAGCACTACAATGTTGTAGTCTATCATCATCCTCAAAAGTGACCGATCTTTTCTTGGTGACCAGATCTTTCATAAATTTGGCATAACCGGGCATTTGTTCTAGAGTTCTACCAAAGGGACATTGATTGAAAGCTGCTTCAACATTGTTATGAAATGACGGTATTTACTATCATCGGTCTTTTTCACTAATCTCTGAGGGAAAGGTGGTGGTGGCCTAGGCATGGGAATTAACCTCATAGGTACTTCTGCATCTTTTCCATTACTTTCCTCTGCTTCACCACTACCCTTTACCACATTATCATTATCCTTTCTCACATTTTCCTCAGTAGACGTCATAGGTGGGTCAATGGTTTGCTTACCACCCCGAGTAGTGATTTCCATACAATGCGCATCATTCTTTGGATTTTGGAAAGTGTTGCTAGGAAGAGTGCCCGGTTGCCATGTGTTCACTGTCGTAGATAATTGCGCCATTTGCAACTCGATCTTCTTAATCGAAATTGCATGTGTATAAACTTTTTGCCCAATACTAGCTAAATCACACCTCAACTCTTTAATGTGCTCATCACTAGCATCGAATCTCCTCATCATTTTGTGCAACATATCCTCAACTCGCTCTATACTATCTCCACCATCCCTAGGAGTAACTACACGATTTTGAGGAGGGACATAGGGCCCATTCCTGTCGTTTTTATTAGCATAGTTACACCTGTTAAAGTTGTTGTCGCGGTTGTATTTTCCATCTCGGACATAATGACCCTCACAGTTGTAGTTACCATAGTTCCGACCTTGGCGCCAGTTATCCTGATTTGAGCCTTGGGCGCTTGGTCGGAAACCCCCCGTCTGCTCGTTTACTGCATAAGTGTCCAGCGCATAATAGCATTCATCATTAGTAGGTAGTGGTTTATCCAAGTAGTTGACTGCATTTATCTTTTCTGCACCCCCAGTGTCATGTTTTAGTACCAACCCATGCTCGGTTCTCATCTGAGCCATTTCTTCACGAATCTCATCTGTTGCTGGGTTGTGAGTGGACTGCACTACGAATGTGTTTCTCTCTGTATCAGACTTCCTAGTACTCCAAGCTTTGTTATTCCGGGAGATTTTCTCTAATTTTTCAGTGATCTCAGCATAAGGACACTCCCCATAAGATCCACCTGCTATAGTGTCCAACACCGCTTTATTGTTATCATCCTGTCCCCGATAGAAGTATTCCTTTAGTGACTCATCATCTATACGGTGATTTGGAAAACTTCTCAAGAATGAGGTGAATCTATCCCAAGAACTACTAACCGACTCTCCCGGTAGTGCTACAAAGTTATTCACTCTGTCTTTGTGGTTTAGTTTCATTGAGACCAGATCGTAGCGTTCTAAGAAGACATCCCTTAGTTGGTTACAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCACATAGCAGCCTCTCCCGCCAGTGAGAGAGGAAACACTCTGAGACCTATTACATCTAAATCCAAATCAGGCCTCCCTACACAGATTTTACACACTGCCCTTACCTTAGCTATATAGTAATGTGGATCCTTAGAAGGTAGCCCTAAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAAGGTGTGTCTTGTGGGTAGAGGAGGCAAGACAAGTGGCCCATCCGAGTCTGCTATGTTATCATAGCCTCTGTAGTATGCTTGGGGCCGTGGAATGGGATTTTGTCCCCTCTGTTGGTGTTCACCCGGAGCATCGGGTAACATATGACCATGAACATCAACCGGAGCTGGGATGTTCTAGTTCAGATCATCATCATTTATTCCCAAGTTTCGATTCATATTTCATAGTGTACGCTCTAACTCGTGATCGTGGGGAAACATGGGTTCTCTTTCTCTCCGTGTATTTGGCATACAAGGAGGATAGTCTAAAAAAAATCAAAAACAATAAAACAAAGTAAAATAAAGAAAATATCAACTAAACTATAGTAATAAGTTCAAGTTAATCTAAAAGTTGTAATCCCCGGCAACGACGCCAAAATTTGATACGCTCAAACTTACTTCTCAAATAAGAAGTAAAGCGGTCGTGTCAAGTAAATAACCCAACTAGTGAGTTTGGGATCGTTCCCACGAGGAAAATAGTCTAGACTTAACTTCAACCTGTTATTACTATTGTTTGGTCAATGACTTCCTTGGAAAGTAAAACAATAAAAAGGGGGGTTTCTATTTCTAAATGAGTAAAAATAACTAACAAAATTAAAAGAGACACTTAACAGCTTTGAAAGTTGGATTTTTAATCAATTAATCAAAGTAACTAGGGTTTACGTGTTCCCTACAGGTTCATAACTTGATAATTCTAACTATAACAATTCTTTCCTAGTATCTTGCATACAAAGTGACAAGTTACGTATTTCTAAATCCTTAGTCGGGCATCTAGAAAATCTCACTCCGCACCTTGGTCCGGCTATGTGTGTTGCTTTACTAACCCTTATCTTTACCTCATATTAAGCATCGTATTCAATATTTGACTAAGTTATTACCTCGTACCAATTATTACTAGCCTATTAGATAGTATACACTAAATCTATGTTAATAATTTGGTTCCTATTATCTACCTCCTTTGTCCGGCAAGTAGCATTAAGGCGACTTCTAACGTTGGCCATCCGTTAAAAAGACTTCTAAGCGAAAGAATTATTAATACATTCAAGACACTATTCTAGAATTGTTATTTTAGTTGGGTTTTATCTCATTATTTGCCTATGGTTCCCACAACCCTAGTTATGGAGTTTAGTTACTCATAGTCATAATCACAATATTCAAATATATTGAATAAGAAAATTCATGTACTTAATTCAATGAGAAAGAGTAAAATTCGAGAGTTTGGTTGATTAATCACCGAAAATCACCAACAATCAATGATAATCTAAAGTCTAACAATACAATGTTTACTAATACGGTGTCTAATAATACGGAGTCTAACAATGATCCAGAGTCTGAAAGTCTAAGAGTCGAACCTCAAAAACGTGGTTTTTCGAACTATTTATAAAAAATAAAAACCTAATTAAACAAGTACTCTATT</genome_strand>
        <mrna_strand>TTTTGAGCCAAAGAATTATTAATACATGCAAGACACTATTCTAGAATTGTTATTTTAGTTAGGTTTTACCTCAATATTCTCCTATGGTTCCCACAATCCTAGTTATGGAGTTTAGTTAACCATAGTCATAATCACAATATTCAAATATATCATATAAGAATTCATGTACTTAATTCAAAGAGAAAGAGTAAAATCTGAGAGTTTTCTTGATTTATCACAAAAAATCACCAACAATTAATGATAATCAAAAGTCTAACAATAAAATGTTTTCTTATACGATGTCTAACAATACGGAGTCTAACAATGATCCAGAGTCTTACCTCAAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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TAGAACTATTTATAGAAAATAAAAACCTAATTAAACAAGGACTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0012M01.2" temp_strand="+" temp_description="C00HBa0012M01.2  CU915724.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0012M01 sequenced_by:sanger upload_account_name:uk">
        <position start="41115" stop="42429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41415" g_stop="42129" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0012M01.2" gen_strand="+" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0012M01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41415" e_stop="42129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTCTTCGTTCCAAAATACTTCAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACAAACCTGCAGGACGGACAGTCATAGACACGACGGACCATCACAAGCTTCGTAACCCCACACTTGGTCAGACTTCCTCATCTTCCTTTAGCTGCTGCACTACGCTGCCACCTACGGACCGTCACAACCACGACGGACCGTCATAAGCTCCTTAGGTTTTCTCTTCTGCATTT-TTCGCTCAAAATCTCCGCATTTAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATTATAACATGAAACCACGTTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCAATACAAAATCTTTGTACAATAGTATCCATATTTTATCCTTTGCAATCATTTGGCTATGAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTATGTGGGATCAGAACATGACACAAACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACTGAGGTGCTAACAATTTCGGTATTGCAACTAGTGTTCTCACTTCAAAACAAAATCCTCATTTTTCACACAATGATTTCAATTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286708" ref_strand="+" ref_description="SGN-E286708 [cLES-14-D9]">
      <seq>tcgcgaggtccgtcatggtcacgacggaccgtcatggactccgtcgtcccatacttatgcaatttcttttgttgctcttcttcattaccctcaacggcaagtatggcggaccgtcataggcacaacggtccgtcgagggccttcgttccaaaacactttaactcttggaatatgggtactgggattacttctctgaacttcatgacgaacctgtaggacggaccgtcatagacacgatggaccgtcacaagcttcgtaaccccatacttggtcagacttccccatcttccttcagcagctgcactacgctgacacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaataaaaagaaactaatatagaaattagcacaaaaaggattttagacacactaaacttaaggaaaaagtattaataataccatgaaaccacggtatatcacttggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0012M01-P7HKq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0012M01.2" temp_strand="+" temp_description="C00HBa0012M01.2  CU915724.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0012M01 sequenced_by:sanger upload_account_name:uk">
        <position start="50626" stop="51752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50926" g_stop="51450" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0012M01.2" gen_strand="+" ref_id="SGN-E286708" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0012M01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50926" e_stop="51450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGACGGATCGTCATGGTCATGACGGACCGTCATGGACTCCATCGTCCCAAAGTTGTTCAATTTCTTATGCTTCTCTTCTTCATTACCCTCGACGGCAAGTTTGACGGACCGTCATAGGCACAACGGTCTGTCGAGGGTCTTCGTTCCAAAACACTTCAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGCAGGACGGACCATCATAGAAACGATGGACCGTCACAAGCTTCGTAACACCACACTTGTTCAGACTTCCCCATCTTCCTTCAGCAACTGCACTACGCTGCCACATACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTCGCTCAAAATCTCCGCATTAAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTTATATAAAAATTACCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAC</genome_strand>
        <mrna_strand>TCGCGA-GGTCCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTTTGTTGCTCTTCTTCATTACCCTCAACGGCAAGTATGGCGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTCCAAAACACTTTAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGTAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAACCCCATACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTAATATAGAAATTAGCACAAAAAGGATTTTAGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACGGTATATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="33135" PGL_stop="34388"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33135" e_stop="33192"/>
            <exon e_start="33291" e_stop="33574"/>
            <exon e_start="33825" e_stop="33876"/>
            <exon e_start="34287" e_stop="34388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.929" e_score="0.993"/>
          <exon-intron don_prob="0.986" acc_prob="0.877" e_score="0.981"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33135" e_stop="33192" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.983">
            <gDNA_intron_boundary i_start="33193" i_stop="33290" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="33291" e_stop="33574" e_length="284"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.929">
            <gDNA_intron_boundary i_start="33575" i_stop="33824" i_length="250"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="33825" e_stop="33876" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.877">
            <gDNA_intron_boundary i_start="33877" i_stop="34286" i_length="410"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="34287" e_stop="34388" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33135" stop="33192"/>
              <exon start="33291" stop="33574"/>
              <exon start="33825" stop="33876"/>
              <exon start="34287" stop="34388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATTAATCACAAGACGACGTGCTAAGTATCAAAACATCTTGTCAAGAAAACGTTTGT : CTTCTAGCCTCTCTATAAAAGTAGATGGCGTTAAAAGTTTCACCTTCAGAGAAATGGCTTCGGCCACTAACAACTTTGATACCTCAACTCAAGTTGGTGAAGGAGGATATGGTTCCGTCTTTAGGGGAATCTTAGCTGACAAAACAATTGTTGCTATCAAGCGAGCAAAAGTAGGATCCCTGCAGGGGCAGAAGGAATTCTTGACTGAAATAGAACTATTATCAAGGTTACATCACCGTAATCTAGTTGTGTTGCTTGGATACTGTGACGAAGAAGGTGAGCAG : ATGCTGATTTATGAGTTCATGCCCAATGGAACTTTGCGTGACTGGCTTTCTG : CCAAATGTAAAAAAAAATTGAAGTTTGGAGCAAGGTTGGGGATCGCACTGGGGGCATCTAAGGGCATCCTTTACCTCCATACTGAAGCTGATCCACCCATAT</gDNA_template>
            <first_frame> L  L  I  T  R  R  R  A  K  Y  Q  N  I  L  S  R  K  R  L   : S  S  S  L  S  I  K  V  D  G  V  K  S  F  T  F  R  E  M  A  S  A  T  N  N  F  D  T  S  T  Q  V  G  E  G  G  Y  G  S  V  F  R  G  I  L  A  D  K  T  I  V  A  I  K  R  A  K  V  G  S  L  Q  G  Q  K  E  F  L  T  E  I  E  L  L  S  R  L  H  H  R  N  L  V  V  L  L  G  Y  C  D  E  E  G  E  Q  :  M  L  I  Y  E  F  M  P  N  G  T  L  R  D  W  L  S   : A  K  C  K  K  K  L  K  F  G  A  R  L  G  I  A  L  G  A  S  K  G  I  L  Y  L  H  T  E  A  D  P  P  I  </first_frame>
            <second_frame>  Y  *  S  Q  D  D  V  L  S  I  K  T  S  C  Q  E  N  V  C  :  L  L  A  S  L  *  K  *  M  A  L  K  V  S  P  S  E  K  W  L  R  P  L  T  T  L  I  P  Q  L  K  L  V  K  E  D  M  V  P  S  L  G  E  S  *  L  T  K  Q  L  L  L  S  S  E  Q  K  *  D  P  C  R  G  R  R  N  S  *  L  K  *  N  Y  Y  Q  G  Y  I  T  V  I  *  L  C  C  L  D  T  V  T  K  K  V  S  R :   C  *  F  M  S  S  C  P  M  E  L  C  V  T  G  F  L  :  P  N  V  K  K  N  *  S  L  E  Q  G  W  G  S  H  W  G  H  L  R  A  S  F  T  S  I  L  K  L  I  H  P  Y </second_frame>
            <third_frame>   I  N  H  K  T  T  C  *  V  S  K  H  L  V  K  K  T  F  V :   F  *  P  L  Y  K  S  R  W  R  *  K  F  H  L  Q  R  N  G  F  G  H  *  Q  L  *  Y  L  N  S  S  W  *  R  R  I  W  F  R  L  *  G  N  L  S  *  Q  N  N  C  C  Y  Q  A  S  K  S  R  I  P  A  G  A  E  G  I  L  D  *  N  R  T  I  I  K  V  T  S  P  *  S  S  C  V  A  W  I  L  *  R  R  R  *  A   : D  A  D  L  *  V  H  A  Q  W  N  F  A  *  L  A  F  C :   Q  M  *  K  K  I  E  V  W  S  K  V  G  D  R  T  G  G  I  *  G  H  P  L  P  P  Y  *  S  *  S  T  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0012M01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33135" stop="33192"/>
                    <exon start="33291" stop="33574"/>
                    <exon start="33825" stop="33876"/>
                    <exon start="34287" stop="34387"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLITRRRAKYQNILSRKRLSSSLSIKVDGVKSFTFREMASATNNFDTSTQVGEGGYGSVFRGILADKTIVAIKRAKVGSLQGQKEFLTEIELLSRLHHRNLVVLLGYCDEEGEQMLIYEFMPNGTLRDWLSAKCKKKLKFGARLGIALGASKGILYLHTEADPPI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="34901" PGL_stop="35334"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34901" e_stop="35334"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="34901" e_stop="35334" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34901" stop="35334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGAGCATGGGATCTTACCCCTCCGAATGTGCAGAGAGGTTGATGGAGTTGGCCCTAAAGTGTTGCCAGGACAAACCAGAAGACAGACCCTCAATGCTGGAGGTGGTTAGGACGCTAGAAACCACAGTCCAAATGATGCCATATACTGATACCGATCCTTTGGATAATAAAGCCAGTTTCAGTGAAAGTACATCATCAGCTTCCTTTTCTAATACTAGAAGCGGAGATCTATTTATGTCATCATCCAATGTATCAGGTGGTGATCTTATTAGTGGTGTTACCCTTAATATTACACCTCGTTAATATTAGCTTATCTTCGACTGCATAAACATTGGCTTGTACACTATGACTAGTAGAGAGTCTATACGATTTGTCTTTTATGTTGTGTACTTGTATACAATAATACCATCTTACTGCTTCTAGATTTATGTAT</gDNA_template>
            <first_frame> Q  E  H  G  I  L  P  L  R  M  C  R  E  V  D  G  V  G  P  K  V  L  P  G  Q  T  R  R  Q  T  L  N  A  G  G  G  *  D  A  R  N  H  S  P  N  D  A  I  Y  *  Y  R  S  F  G  *  *  S  Q  F  Q  *  K  Y  I  I  S  F  L  F  *  Y  *  K  R  R  S  I  Y  V  I  I  Q  C  I  R  W  *  S  Y  *  W  C  Y  P  *  Y  Y  T  S  L  I  L  A  Y  L  R  L  H  K  H  W  L  V  H  Y  D  *  *  R  V  Y  T  I  C  L  L  C  C  V  L  V  Y  N  N  T  I  L  L  L  L  D  L  C   </first_frame>
            <second_frame>  K  S  M  G  S  Y  P  S  E  C  A  E  R  L  M  E  L  A  L  K  C  C  Q  D  K  P  E  D  R  P  S  M  L  E  V  V  R  T  L  E  T  T  V  Q  M  M  P  Y  T  D  T  D  P  L  D  N  K  A  S  F  S  E  S  T  S  S  A  S  F  S  N  T  R  S  G  D  L  F  M  S  S  S  N  V  S  G  G  D  L  I  S  G  V  T  L  N  I  T  P  R  *  Y  *  L  I  F  D  C  I  N  I  G  L  Y  T  M  T  S  R  E  S  I  R  F  V  F  Y  V  V  Y  L  Y  T  I  I  P  S  Y  C  F  *  I  Y  V  </second_frame>
            <third_frame>   R  A  W  D  L  T  P  P  N  V  Q  R  G  *  W  S  W  P  *  S  V  A  R  T  N  Q  K  T  D  P  Q  C  W  R  W  L  G  R  *  K  P  Q  S  K  *  C  H  I  L  I  P  I  L  W  I  I  K  P  V  S  V  K  V  H  H  Q  L  P  F  L  I  L  E  A  E  I  Y  L  C  H  H  P  M  Y  Q  V  V  I  L  L  V  V  L  P  L  I  L  H  L  V  N  I  S  L  S  S  T  A  *  T  L  A  C  T  L  *  L  V  E  S  L  Y  D  L  S  F  M  L  C  T  C  I  Q  *  Y  H  L  T  A  S  R  F  M  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0012M01.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34902" stop="35204"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSMGSYPSECAERLMELALKCCQDKPEDRPSMLEVVRTLETTVQMMPYTDTDPLDNKASFSESTSSASFSNTRSGDLFMSSSNVSGGDLISGVTLNITPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="51075" PGL_stop="40851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51075" e_stop="50822"/>
            <exon e_start="41171" e_stop="40851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.890"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.890">
            <gDNA_exon_boundary e_start="51075" e_stop="50822" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50821" i_stop="41172" i_length="9650"/>
          </intron>
          <exon e_serial="2" e_score="0.919">
            <gDNA_exon_boundary e_start="41171" e_stop="40851" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51075" stop="50822"/>
              <exon start="41171" stop="40851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688288" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51075" stop="50822"/>
              <exon start="41171" stop="40851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550645" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51075" stop="50822"/>
              <exon start="41171" stop="40851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550629" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51075" stop="50822"/>
              <exon start="41171" stop="40851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688267" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAACGAAGACCCTCGACAGACCGTTGTGCCTATGACGGTCCGTCAAACTTGCCGTCGAGGGTAATGAAGAAGAGAAGCATAAGAAATTGAACAACTTTGGGACGATGGAGTCCATGACGGTCCGTCATGACCATGACGATCCGTCGCGAGGTCCGTCGACCCAGCCGCATTTTGGCAGACTTCCAGCAAATAGAGTACTTGTTTAATTAGGTTTTTATTTTTTATAAATAGTTCGAAAAACCACGTTTTTGAG : GTTAGACTCTGGATCATTGTTAGACTCCGTATTGTTAGACACCTTATTAGTAAACATTATATTGTTAGACTTTTGATTATCATTGATTGTTGGTGATTTTTTGTGATTAATCAAGCAAACTCTCGGATTTTACTCTTTCTCATTGAAGTAAGTACATGAATTCTTATTTAATATATTTGAATATTATGATTATGACTATGAGTAACTAAACTTCATAACTAGGGTTGTGGGAACCATAGGCTAATAATGAGATAAAACCTAACTAAAATAACAATTCTAGAATAGTGTCTTGCATGTATTAATAATTCTTTCGCTTAGAAG</gDNA_template>
            <first_frame> G  T  K  T  L  D  R  P  L  C  L  *  R  S  V  K  L  A  V  E  G  N  E  E  E  K  H  K  K  L  N  N  F  G  T  M  E  S  M  T  V  R  H  D  H  D  D  P  S  R  G  P  S  T  Q  P  H  F  G  R  L  P  A  N  R  V  L  V  *  L  G  F  Y  F  L  *  I  V  R  K  T  T  F  L  R :   L  D  S  G  S  L  L  D  S  V  L  L  D  T  L  L  V  N  I  I  L  L  D  F  *  L  S  L  I  V  G  D  F  L  *  L  I  K  Q  T  L  G  F  Y  S  F  S  L  K  *  V  H  E  F  L  F  N  I  F  E  Y  Y  D  Y  D  Y  E  *  L  N  F  I  T  R  V  V  G  T  I  G  *  *  *  D  K  T  *  L  K  *  Q  F  *  N  S  V  L  H  V  L  I  I  L  S  L  R   </first_frame>
            <second_frame>  E  R  R  P  S  T  D  R  C  A  Y  D  G  P  S  N  L  P  S  R  V  M  K  K  R  S  I  R  N  *  T  T  L  G  R  W  S  P  *  R  S  V  M  T  M  T  I  R  R  E  V  R  R  P  S  R  I  L  A  D  F  Q  Q  I  E  Y  L  F  N  *  V  F  I  F  Y  K  *  F  E  K  P  R  F  *   : G  *  T  L  D  H  C  *  T  P  Y  C  *  T  P  Y  *  *  T  L  Y  C  *  T  F  D  Y  H  *  L  L  V  I  F  C  D  *  S  S  K  L  S  D  F  T  L  S  H  *  S  K  Y  M  N  S  Y  L  I  Y  L  N  I  M  I  M  T  M  S  N  *  T  S  *  L  G  L  W  E  P  *  A  N  N  E  I  K  P  N  *  N  N  N  S  R  I  V  S  C  M  Y  *  *  F  F  R  L  E  </second_frame>
            <third_frame>   N  E  D  P  R  Q  T  V  V  P  M  T  V  R  Q  T  C  R  R  G  *  *  R  R  E  A  *  E  I  E  Q  L  W  D  D  G  V  H  D  G  P  S  *  P  *  R  S  V  A  R  S  V  D  P  A  A  F  W  Q  T  S  S  K  *  S  T  C  L  I  R  F  L  F  F  I  N  S  S  K  N  H  V  F  E  :  V  R  L  W  I  I  V  R  L  R  I  V  R  H  L  I  S  K  H  Y  I  V  R  L  L  I  I  I  D  C  W  *  F  F  V  I  N  Q  A  N  S  R  I  L  L  F  L  I  E  V  S  T  *  I  L  I  *  Y  I  *  I  L  *  L  *  L  *  V  T  K  L  H  N  *  G  C  G  N  H  R  L  I  M  R  *  N  L  T  K  I  T  I  L  E  *  C  L  A  C  I  N  N  S  F  A  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0012M01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="40852" PGL_stop="50886"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40852" e_stop="41180"/>
            <exon e_start="50831" e_stop="50886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.903"/>
          <exon-only e_score="0.893"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="40852" e_stop="41180" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41181" i_stop="50830" i_length="9650"/>
          </intron>
          <exon e_serial="2" e_score="0.893">
            <gDNA_exon_boundary e_start="50831" e_stop="50886" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40852" stop="41180"/>
              <exon start="50831" stop="50886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273427" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTAAGCGAAAGAATTATTAATACATGCAAGACACTATTCTAGAATTGTTATTTTAGTTAGGTTTTATCTCATTATTAGCCTATGGTTCCCACAACCCTAGTTATGAAGTTTAGTTACTCATAGTCATAATCATAATATTCAAATATATTAAATAAGAATTCATGTACTTACTTCAATGAGAAAGAGTAAAATCCGAGAGTTTGCTTGATTAATCACAAAAAATCACCAACAATCAATGATAATCAAAAGTCTAACAATATAATGTTTACTAATAAGGTGTCTAACAATACGGAGTCTAACAATGATCCAGAGTCTAACAATCTAATT : GTGGTTTTTCGAACTATTTATAAAAAATAAAAACCTAATTAAACAAGTACTCTATT</gDNA_template>
            <first_frame> F  *  A  K  E  L  L  I  H  A  R  H  Y  S  R  I  V  I  L  V  R  F  Y  L  I  I  S  L  W  F  P  Q  P  *  L  *  S  L  V  T  H  S  H  N  H  N  I  Q  I  Y  *  I  R  I  H  V  L  T  S  M  R  K  S  K  I  R  E  F  A  *  L  I  T  K  N  H  Q  Q  S  M  I  I  K  S  L  T  I  *  C  L  L  I  R  C  L  T  I  R  S  L  T  M  I  Q  S  L  T  I  *  L :   W  F  F  E  L  F  I  K  N  K  N  L  I  K  Q  V  L  Y  </first_frame>
            <second_frame>  S  K  R  K  N  Y  *  Y  M  Q  D  T  I  L  E  L  L  F  *  L  G  F  I  S  L  L  A  Y  G  S  H  N  P  S  Y  E  V  *  L  L  I  V  I  I  I  I  F  K  Y  I  K  *  E  F  M  Y  L  L  Q  *  E  R  V  K  S  E  S  L  L  D  *  S  Q  K  I  T  N  N  Q  *  *  S  K  V  *  Q  Y  N  V  Y  *  *  G  V  *  Q  Y  G  V  *  Q  *  S  R  V  *  Q  S  N   : C  G  F  S  N  Y  L  *  K  I  K  T  *  L  N  K  Y  S  I </second_frame>
            <third_frame>   L  S  E  R  I  I  N  T  C  K  T  L  F  *  N  C  Y  F  S  *  V  L  S  H  Y  *  P  M  V  P  T  T  L  V  M  K  F  S  Y  S  *  S  *  S  *  Y  S  N  I  L  N  K  N  S  C  T  Y  F  N  E  K  E  *  N  P  R  V  C  L  I  N  H  K  K  S  P  T  I  N  D  N  Q  K  S  N  N  I  M  F  T  N  K  V  S  N  N  T  E  S  N  N  D  P  E  S  N  N  L  I  :  V  V  F  R  T  I  Y  K  K  *  K  P  N  *  T  S  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0012M01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41415" e_stop="42129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="41415" e_stop="42129" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41415" stop="42129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGGGTCTTCGTTCCAAAATACTTCAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACAAACCTGCAGGACGGACAGTCATAGACACGACGGACCATCACAAGCTTCGTAACCCCACACTTGGTCAGACTTCCTCATCTTCCTTTAGCTGCTGCACTACGCTGCCACCTACGGACCGTCACAACCACGACGGACCGTCATAAGCTCCTTAGGTTTTCTCTTCTGCATTTTTCGCTCAAAATCTCCGCATTTAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATTATAACATGAAACCACGTTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCAATACAAAATCTTTGTACAATAGTATCCATATTTTATCCTTTGCAATCATTTGGCTATGAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTATGTGGGATCAGAACATGACACAAACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACTGAGGTGCTAACAATTTCGGTATTGCAACTAGTGTTCTCACTTCAAAACAAAATCCTCATTTTTCACACAATGATTTCAATTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> R  G  S  S  F  Q  N  T  S  T  L  G  I  W  V  L  G  L  L  L  *  T  S  *  Q  T  C  R  T  D  S  H  R  H  D  G  P  S  Q  A  S  *  P  H  T  W  S  D  F  L  I  F  L  *  L  L  H  Y  A  A  T  Y  G  P  S  Q  P  R  R  T  V  I  S  S  L  G  F  L  F  C  I  F  R  S  K  S  P  H  L  A  L  D  R  F  P  A  K  *  K  E  T  Y  I  K  I  S  T  K  R  L  L  D  T  L  N  L  R  K  K  Y  *  L  *  H  E  T  T  L  Y  Q  H  P  Q  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  I  Q  N  L  C  T  I  V  S  I  F  Y  P  L  Q  S  F  G  Y  E  S  R  L  I  S  S  N  L  C  M  L  S  L  L  G  L  N  Y  V  G  S  E  H  D  T  N  S  P  C  T  N  T  Y  P  L  Q  F  L  T  E  V  L  T  I  S  V  L  Q  L  V  F  S  L  Q  N  K  I  L  I  F  H  T  M  I  S  I  *  V  *  G  L  </first_frame>
            <second_frame>  E  G  L  R  S  K  I  L  Q  L  L  E  Y  G  Y  W  D  Y  F  S  E  L  H  D  K  P  A  G  R  T  V  I  D  T  T  D  H  H  K  L  R  N  P  T  L  G  Q  T  S  S  S  S  F  S  C  C  T  T  L  P  P  T  D  R  H  N  H  D  G  P  S  *  A  P  *  V  F  S  S  A  F  F  A  Q  N  L  R  I  *  L  W  T  D  F  L  Q  N  K  K  K  L  I  *  K  L  A  Q  K  G  F  W  T  H  *  T  *  G  K  S  I  N  Y  N  M  K  P  R  Y  I  N  T  L  N  L  N  S  L  F  V  L  K  R  R  T  M  T  Q  Y  K  I  F  V  Q  *  Y  P  Y  F  I  L  C  N  H  L  A  M  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  I  M  W  D  Q  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  L  R  C  *  Q  F  R  Y  C  N  *  C  S  H  F  K  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </second_frame>
            <third_frame>   R  V  F  V  P  K  Y  F  N  S  W  N  M  G  T  G  I  T  S  L  N  F  M  T  N  L  Q  D  G  Q  S  *  T  R  R  T  I  T  S  F  V  T  P  H  L  V  R  L  P  H  L  P  L  A  A  A  L  R  C  H  L  R  T  V  T  T  T  T  D  R  H  K  L  L  R  F  S  L  L  H  F  S  L  K  I  S  A  F  S  F  G  Q  I  S  C  K  I  K  R  N  L  Y  K  N  *  H  K  K  A  F  G  H  T  K  L  K  E  K  V  L  I  I  T  *  N  H  V  I  S  T  P  S  T  *  I  R  C  L  S  S  S  D  A  L  *  L  N  T  K  S  L  Y  N  S  I  H  I  L  S  F  A  I  I  W  L  *  I  P  I  N  L  I  K  S  M  H  A  I  T  I  R  L  E  L  C  G  I  R  T  *  H  K  L  T  M  H  *  H  L  S  S  S  I  S  H  *  G  A  N  N  F  G  I  A  T  S  V  L  T  S  K  Q  N  P  H  F  S  H  N  D  F  N  L  S  I  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0012M01.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41784" stop="42116"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HETTLYQHPQLKFVVCPQATHYDSIQNLCTIVSIFYPLQSFGYESRLISSNLCMLSLLGLNYVGSEHDTNSPCTNTYPLQFLTEVLTISVLQLVFSLQNKILIFHTMISI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0012M01.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41513" stop="41731"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRTITSFVTPHLVRLPHLPLAAALRCHLRTVTTTTDRHKLLRFSLLHFSLKISAFSFGQISCKIKRNLYKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="50926" PGL_stop="51450"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50926" e_stop="51450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="50926" e_stop="51450" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50926" stop="51450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGCGACGGATCGTCATGGTCATGACGGACCGTCATGGACTCCATCGTCCCAAAGTTGTTCAATTTCTTATGCTTCTCTTCTTCATTACCCTCGACGGCAAGTTTGACGGACCGTCATAGGCACAACGGTCTGTCGAGGGTCTTCGTTCCAAAACACTTCAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGCAGGACGGACCATCATAGAAACGATGGACCGTCACAAGCTTCGTAACACCACACTTGTTCAGACTTCCCCATCTTCCTTCAGCAACTGCACTACGCTGCCACATACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTCGCTCAAAATCTCCGCATTAAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTTATATAAAAATTACCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAC</gDNA_template>
            <first_frame> S  R  R  I  V  M  V  M  T  D  R  H  G  L  H  R  P  K  V  V  Q  F  L  M  L  L  F  F  I  T  L  D  G  K  F  D  G  P  S  *  A  Q  R  S  V  E  G  L  R  S  K  T  L  Q  L  L  E  Y  G  Y  W  D  Y  F  S  E  L  H  D  E  P  A  G  R  T  I  I  E  T  M  D  R  H  K  L  R  N  T  T  L  V  Q  T  S  P  S  S  F  S  N  C  T  T  L  P  H  T  D  R  H  K  H  D  G  P  S  *  A  P  *  V  V  S  S  A  F  F  R  S  K  S  P  H  *  A  L  D  R  F  P  A  K  *  K  E  T  Y  I  K  I  T  T  K  R  L  L  D  T  L  N  L  R  K  K  Y  *  *  Y  R  E  T  T  V  Y  H </first_frame>
            <second_frame>  R  D  G  S  S  W  S  *  R  T  V  M  D  S  I  V  P  K  L  F  N  F  L  C  F  S  S  S  L  P  S  T  A  S  L  T  D  R  H  R  H  N  G  L  S  R  V  F  V  P  K  H  F  N  S  W  N  M  G  T  G  I  T  S  L  N  F  M  T  N  L  Q  D  G  P  S  *  K  R  W  T  V  T  S  F  V  T  P  H  L  F  R  L  P  H  L  P  S  A  T  A  L  R  C  H  I  R  T  V  T  S  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  F  A  Q  N  L  R  I  K  L  W  T  D  F  L  Q  N  K  K  K  L  I  *  K  L  P  Q  K  G  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  R  Y  I   </second_frame>
            <third_frame>   A  T  D  R  H  G  H  D  G  P  S  W  T  P  S  S  Q  S  C  S  I  S  Y  A  S  L  L  H  Y  P  R  R  Q  V  *  R  T  V  I  G  T  T  V  C  R  G  S  S  F  Q  N  T  S  T  L  G  I  W  V  L  G  L  L  L  *  T  S  *  R  T  C  R  T  D  H  H  R  N  D  G  P  S  Q  A  S  *  H  H  T  C  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  Q  A  R  R  T  V  I  S  S  V  G  G  L  F  C  I  F  S  L  K  I  S  A  L  S  F  G  Q  I  S  C  K  I  K  R  N  L  Y  K  N  Y  H  K  K  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0012M01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51186" stop="51434"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HHTCSDFPIFLQQLHYAATYGPSQARRTVISSVGGLFCIFSLKISALSFGQISCKIKRNLYKNYHKKAFGHTKLKEKVLIIP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0012M01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51046" stop="51276"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQRSVEGLRSKTLQLLEYGYWDYFSELHDEPAGRTIIETMDRHKLRNTTLVQTSPSSFSNCTTLPHTDRHKHDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0012M01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51158" stop="51370"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRWTVTSFVTPHLFRLPHLPSATALRCHIRTVTSTTDRHKLRRWSLLHFFAQNLRIKLWTDFLQNKKKLI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0012M01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50951" stop="51157"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTVMDSIVPKLFNFLCFSSSLPSTASLTDRHRHNGLSRVFVPKHFNSWNMGTGITSLNFMTNLQDGPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 121 chains have been computed
$ 
$ memory statistics:
$ 20312 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2256 bytes was the average size of a spliced alignment
$ 10480 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2096 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 144 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 13:49:20
-->
