<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 13:52:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0032K07-IYm47/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0032K07-IYm47/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0032K07-IYm47/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g16250" ref_strand="+" ref_description="C2_At1g16250">
      <seq>caaattgttaaagccctctttcactttctataatttccacaagaaaatcggcccgtcgttcttcttggagtcgccagaagttttacttggatgcagcatcacttcaacaatccattggactagctgaatttcatgaccgattcccagtatctggaaatttcgagctcttagagagtgaccttaacaatggagacaattgatcaaccgctaatacctggactaccagatgatttggcattgagatgtctagcaatgatatcacatggatatcatggtattcttgaaacagtaagtagacaatggaggaagctattccatagtgcagaatattccaattataaagctagagaaggatggtctggaaactggttatttgttctgactggagcatctgagaatcaatgggttgcttatgaccctgaagctgataggtggcaccctctgcctaggatacccacgagccaccctgaccaagagcaccttggtttctcatgtgcctgtgtcttgaataaatttcttctgattggcggcacatatggagcacgtgagcaagtaattccccatcaaacggccctgacaacaaatgaagttttccaatttgatcctttcagaaaagagtggagaaatgttgcaagtatgagaacagcacgttctcacttcgcctgcagtgttgtctctggtaaggtttatgtagctggagggcgcaacacatcatcgggaggagggcttgctcttgctgaagtatataatccactgacagacaagtgggaagacctaccacctctgccaagtccccagatggattgcataggcctaccatacgatggtaaatnntatgttctaacggaccttngtgggctgctagagcatgagacatctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0032K07-IYm47/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C00HBa0032K07.2" temp_strand="+" temp_description="C00HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="37033" stop="45341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37333" g_stop="37517" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37518" i_stop="38597" i_length="1080">
            <donor d_prob="0.964" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38598" g_stop="39173" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="764" r_length="576" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39174" i_stop="44922" i_length="5749">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44923" g_stop="45041" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="883" r_length="119" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0032K07.2" gen_strand="+" ref_id="C2_At1g16250" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="C2_At1g16250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37333" e_stop="37517"/>
          <exon e_start="38598" e_stop="39173"/>
          <exon e_start="44923" e_stop="45041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTGTT-AAGCCCTCTTTCACTTTCTATAATTTCCACAAGAAAATCGG-CCGTCGTTC-TCTTGGAGTCGCCAGAAGTTTTACTCGGATGCAGCATCACTTCAACAATCCTTTGGACTAGCTGAATTTCATGACCGATTCCCTGTATCTGGAATTTTCAAGCTCTTAGAGAGTGACCTTATTAATGTAAGCAAGTCTCCATTTCATCACTTTGTGTTTGATTTTTGGCTTTGATTATTTCCATTACAATAAAGGGTAGTCTTGCGAAGATTGTTAGAATGGGTTTACACCAATTGGGTCAAAAAACGAGATATCTATAATTCATTTTATTGATGGATTGTCATTTTATGTTTGTGGTGTTGTCTTGGTCAGAGAGGAATTTAGGATTTGTATCAACATTGATGCACAACTAAAACAACAAAAGAAAATAGTTTGAAGTGGGAATTGATTGCTAGTTTTTTATGTAAATAACTCAACATTTAACCACGATCGCCATTTTTCCTTCGTGTAGGATGGGTGTATAATTATTTACCAATTCTAGAAATATATACATAAAATACCTAGTTTAGGAGAGACCATGGGTGCACTTGCCCCAATTTTAGTGCATACACTCACCCCTGGTCTTGGTGCATGATCATGAAAACTAGGTGCTTTATTATCTGAGTTTTATGTTTTGGATTCTCTCTTGAAGGGAAATCTGGTATCTGTTTTAATCCCCTTGATGACATTGAGGTACATGAACTAGGGTTTGCTCAAAACATATGTTTTTGGGGAACAGTAGAGGTCATAGAAAAGAAAGCAAAGCTGGGATATTGTCAAAATCAGCAATTGCTTGTTTAAGACAAATTGTTGGCTCGAAGTAGCTCAAATCCTGGAGCTCCTTTTTGCTATAACCCATCTTTCTATTCTTATCCGTTCTTTTCTTCTACTTTTTTGTGTGTATTATTCAGTCACTTCCTTTTCTCTTCTTCCATTATTTCAGTTGAGGAGAAATTGCTGTCTGTAGTACTTTGGAATGCAGTACTTTATTGCCGTGCTATTTCTTCCATTGTGCCCCTTGTTATGGGTTCTTAAGCCCAAAAATCATTCCTTCCCCTGTTAAATTTCTTGTACTTACACGGGGCCAAGTGCTAATGAACTACATATACTAAAAACTTCCATACATCTCTTGTTGTGACATTCCAAATCCTGAACTCTGCATCTGCATTCTTTTTCATCCACCTGTATTTCATACTGTTAAGTCATTTACAAAGTAATTTTCTGCAGGGAGACGATTGATCAACCACTAATACCTGGACTACCAGATGATTTGGCATTGAGATGTCTAGCAATGATATCACACGGATATCATGGCATTCTTGAAACAGTAAGTAGGCGATGGAGGAAGCTATTCCATAGTGCAGAATATTCCAATTATAAAGCTAGAGAAGGTTGGTCTGGTAACTGGTTATTTGTTCTGACTGGAGGATCTGAGAATCAATGGGTTGCTTATGATCCTGAAGCTGATAGGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAGCACCTTGGTTTCTCATGTGCCTGTGTCTTGAATAAATTTCTTCTGATTGGCGGCACATATGGAGCACGTGATCAAGTAATTCCCCATCAAACAGCCCTGACGACAAATGAAGTTTTCCAATTTGATCCTTTCAGAAAAGAGTGGAGAAATGTTGCAAGTATGAGAACAGCACGTTCTAACTTTGCCTGCAGTGTTGTCTCTGGTAAGGTTTATGTAGCTGGAGGGCGCAACACATCATCGGGAGGAGGACTTGTTCTTGCTGAAGTTTATAATCCACTGACAGACAAGTATGTTTTTAGAAAATTATGGTATATTTTTTTGAGCAAGCATTACTTTATGAATTTTAAGTATAAAAGGAAATATGGCTTTTTGGATACAAAACTGATCTTAGATTGGGGTATATAAGTAGTTTATCATGCTATTATTTGGATCACAAGTTATCCAATTGTTGTCGAGATTGTTAAATTTATCTTAGGGACTTGGATATGAAATATAGCAGAATATACGAAGTATGGGAATGCCATGTGAATGTTTATCTAGATGTGTGCTGCTTCTAAGTAAATACCTGTTTGTGTTGAGTGTTGACAGAGCTGTTAAAATACGATCCTTTTATTCTTGAGCTGAGTACTGTGTCTTCAAGCAATGAATCTTAGATCTCAAAATGGAATTGCAAGCATACTAACAATGATTTCTGAACCAGACTATTTATCTTCTTATTCTCTTGTTTCTGCGTGTTTTTAGTTTTTCATATCAACATATATCATTTTTTTAATTGTTTAAGGTAGTACATATTAGAATCAGCGACAAGTTCGTCTTGTGAAGTAATTGCAAAGGTGTTGCCATACGAAAAGTGTAGTGACCCCAAAGAGTCAACGATGGCATCAGTGTTGTTTGCAATAGCTATGTTGCACCAATAATAAAGTAAAAGATGTATATTTTTATTTAATACTAATTACAGATTCCGATTTGCTCTCGAAAATTCTACCATTAGGTTCATTCCTTTCTTCCCATATAATCCACCATGTATATTCTAAGTTTTCCTTGCCCCCCAAAATACTAAATAAGAAGCTCCAGATTTGAGACGTGAATCGTCTGGGAAGAATAAGGTGATTCACATCTTCATAATGCTTATGACATAGAACACACCTATTATGAACGTTGACTCCCCTTTTTGAAGGTTTTCATGTGTAAGACAGGCCCTTCTAGCAACTAACCAAGTAAACAGTTGACTTTCATGGTAGCTTTGTTCTGTTGAATGAGAAGGGGACAGGGAGATTGTGCCAGGTAATGGGAGCAATATGAGAGATGTTGTGATTTTGGGTACTGTGGGTGTATAAAGATTAATGAGGTTAAGCTATTCCTAGGATGAACATGGGAAGAATGATTGGGGAAACGAGATTCCGGTGGAGTTCTTGAAGAACACAGGTAAGACAAGAAGGTTTGGAATGGCTGATGGGGGGCTGTTCATATCATTTTAAGACTACAAAATGCTTGAAAAGTGGGGGTGGAGTACAATGATCCTGTTGTACTGAAACAAGGGTGAGATTCATAACTACAAGTTGATATTCATGGGGTATTAAGCTGCTTAGCCACACTATGAAAGTCTTGGAAAGGGTGATGGAGATGAAGATGAGGAGGGGTGTGTCTTTTTTTGAGAACCGGTTCGGATTCATATTGGATGATCGACTATAGAAAGCATTCATGTTGTGAGGAGACTGGGGGAGAGTAAATGGAGAGAAAAAGGGACTTATATATGATATTCATTGACCTAGAAAATGTATATGATAAAGTCGGGGAGGTCCTATGGAGATGCCTTAAGGCTGGAGGTGTATCAATGGCATACATTGGGGTGATGAAGGACATTATGATAGAGCCAAGCCCCGGGTAAGAGCAATGGAAAGAGACTCAGAGTAACACACAAGGATCTTAATACAAGCACTCCACAAATGCTTCCAGGCATATTTGCAATGACCCTTAATTGAAGGGTCTCTTCTGGACCCAGCCTCTCCCCTCTCTGGTAGACTTCCTCCATCGGAGCAGCCATCTAGAACCCAACTTTTTTCATGGACAACAAAATCCTCTTTCGCCTTGGGGCCAAATCTTATGAATCACAGAATCTAAATCCAAATCAGGGATTTGGTATGATTGGATCAGAAGTGCATGATACTACATGAGCAAACTGATACTCAGCAAGGGAGCCATGTCTTGGATATGCAAAAGGCTCAAGGAGGCATCGGAGAACAAAGGAAAGACCTTCAAGTCTTGGAAATGCAAAGATAACACAACCAACATTTTCTTAACACAAAAGTTCAATCAATATGGAAGATTTGTCTCAGTAATTACTGTTAAAGGAAATGTCAGAGCAGCAATTATCCTGTCAGTTAACACATTCAATGAGGGGTGGAATGTTCTAATAGCAAAATAGAAAATTTCATTGATGGAAGTAGTAGTACAAAATTAATCACAAACAAGCAACCTAGACTCCTTAACCAAATCAGAGGGGGGAAGAGTTACAAAGAAATGTTTTTCAAGAACAAATGGACTAAGAGAGACATAGGAAAAAGGCATGCTGGACAGATGCTTAGTGGGGAGCTTTGCAAGAGCTGAAGACGCTCCAACTCGTAATGACATCAGAAGATGGGCTCAACAAACTTGGAATGGAGCCCAGGGAGTTCAAACATAAAAAAGGAGAATAGAGAGAGTATCTGCTCGCGCCGCACTTTTGGGGTTGAAGTTCCCACGTCTGCTCCTCTCTAGCTTCATGCCATTGAAGCGCATGTCCTTCGCATCACGTCACCGCTTAAAAAGGTGGAGCACCCACTTATCTCAACACTGTTGTTTCCTTCTTCATTCCTTAAAACAAATAATGGAAATCCCCAACCATGCACTAGATCAAAACAATTATTACATGAACCATCACTATTCAACTATCCTCCTATAAAGATTTATTGGTCATTTGGGCCCTATTGGACAAAGTTATTGATATCATCCTAGCATTTAGTTTAAGTTTTCTTATCTATATGTAGCAATAGTAAAATTGTGTCCTCCATCCAAATTGGTTCGTACAAAATACCCTTACCTGGCAATAGTCGAATCTCTTTACTTTGCAACTTTATCCTTATGTCTTGGTTTCACAATGATTTTAGTTTCTATTTAATCCCTCTTGTGTCGTGTTGTTAGGCATTTTCCCTATCCATGTAGTCTCTTGCCTACGACGACTTATTTGAATTTTATGCCTCATGGACTAGTATCTACCCTTTGTAACACCGCTTTAGGGTGCCTATACAACAATAGCAATCAAGTGTTATCAAAAGAAAAAAATCTCTAAAGTTTGTTACGGGAGAAACAAATACAATTATATATGTTTAGTCCTAGACTAATAAGTATAAGCGTGAATGACAAATATAAGAACAAAGAAACTGAAAAAAAAATACGATAAAATGAAATATCAATTGCTTAGTGTCTCCTTTTCACAAGAGGTTCATTGGCAAAGAGAAGTATGTCTTAGAACATTGATGACGAAACTAAAATGTACTTCAAGTGAGGCAAAGCGTTCAACATGTTTTGAGCCTCACTTCGGGCTTAAGCGCGCATTTGACAATACTACAACATACTCAATGTCATCCCCCAAATGGGGTCTGGGAGGGTAGAGTATACGCAAATTTTATTTCTGCCTCGTGGAGGTATAGAGGTTGTTTCCGAAAGACTCTCGGCTCAAGTGCAACAGATTAAAGTATTTATGAAAAAGAATGTGACAGTGAAGAAAACATGCCAATTAATAAGGAAAGCAACACATGGCATTCAATGAAAAGAAAGAGTAACAACAATGAAATGATTCAGTAATTGAAAAGGAAATATATAAGACTAATAATGCAACAAACACGGTTCGATATTGGTTTCTAATATTGGGTTAACCGATAACCCATTTAGAATATAATAAATTACTATTTTAATTTTTAGTCATACATAGATATCAAACAAAAAACAACAATATTAATATAATTAATATATATGGACCTTACACAATTAACATTACTCAACTCTGGCCTCTGAATTTACCTTTTAGGTTGTAGTATTACTTTAGTCTTTATTGTTGCAATTTAGTCTGATTTGCTTGTTTCGATGTATGCCTGTGTGCGTAAAATTATTGGACAAATCATATATTTGTTTTGAAAGTATTTTCTTATCAGTTAAAATCGAAAGCTGATAACAAATATCTTATTGGTTCGCTTTTTGGTTTAACATATTTAAAAATCGATAAACCGAACCGATCATACTTAAAATCGAGCTGAATCAATCGATACACACCCCTAATCCGCGACCTCCACCCGTTTGGGGTGCCAATTTGATGGATCAATTTCTTACTCACACCCGTTAATAAGGTGGGAATCATTGTTTTTACTCCCTTCTTGGAAATGATGTGATGGAAGTTGGAACCAATTGCTTTTAATTATCACCTTCGTGTAGTTCACTAAACAATTTTACATATTAGGATTTCTAGATTTGTTTCAACTTCCTGGTTAGTTGCCAATTTTGAGAATTAATTTTTCCAGTCAAAATGAATCTACATTGTTCCATTACATTTCCTTGTCAAATTATTTTCTATGGGAGTATCTATGTAACTTATAGTTTTGTTCATGGAAATTTAATTTTGCAACTTTTCAAGATCAACATCAACAATAACATATCCAGTGGAATCCCATAGGTGGGAGGACAGATTATACCCCTACCTCTTGGAGGTTAGGAGACTATTTCGGGAGGACCCTCGACCCGAGTATAACATATTAGAATAATGAAAAGGAAGACGACAGTGAAGAAACAAAACAGCTAAAGGAAACAAGAGCAACACAAAATAATGCGATAAGCTGAACGGAATAAACATATGATGATGTAATCAAAAACAGAACAACTACAAGAAAACAGCTAAACCCCTCAAAAATCAAGACAACACTCCACACCTACTAACCTTCTTCCCTAATGTGCAACCTCCACACCCTACAAGGTCATAGTTTATATATGGTAGAATTTTTTTCCTTAATCTGCATTCCAATTTCATATTTATTAGCAAGTACATATGTTTCATTTTATGTAACACTATTTCCTTATTAATCTATCAAAAAAAAAAGAAGGGAAAAGACATCAAGTTGCACCCTAAACTTGTTCTAAAAAGTCACTCACACACTCATACTTTACGGGTGATCTTTTACCCTTCTATACTTGTTTAAAATGTAATTATTACCACCCAAAATGCTGATTTGGCAGGTGCATGTGAATCACCCTGTACCATGGGACAGGCTTTGTATGTTTTACGGCGAAAATAACACCACTTCAAATAAGGATTGGGTGTGGGTGGGTGTGTGTAGGTCACCCGTAAAGTACAAGTGTGTTAGTGACTTTTCCGGACAACTTTAGGGTGCAGCCCGTCTTTCTAAAGTTGGAAAAAATTTAACTTTTAACTTCTCAAATTATCTTTATTCTTTAATGACATCATCTTGTAGCCGTGGAAACCTCATGGCATGTTAAAGAACACAAGTTCCAAAAATCGGTCTTAAATCTCTCAAAAGTAGTCATGTAAATTGAAATGTGCATACTATTTTTGAGAGAAAACAGTACTTCCATTAATCTTTGAAGCAGCAAAAAACTTTATAAGAAAAGCTTTTAAGAGGCATATGCGACATATACTATATTTATGAAATGAAAAACACTTCCCAATTTAAAAGTAAAATAAGAAGAAAAGGTTAATGCAAGTATAAGGGTGATGAAAACATGGACTCAAAATGTGTATCAGTGGAACGTATATCTAGTGGAAATAAATTTTGATGCTTTGACTACATTTGCCGTTGGGTCGTAGTTCTTTAGAAACCTATGTACCTTGTTATTTTATCTTGGAAACGATTCCTTGTTGCTTCTAACTTCTACTCTGTTTTTCTCTTTGAAGCAAAAGGATGGTCGGATATTTAATTTGACAGAATTTTAAGAGAAGAATGTTTATGTTTTATCCTATACTGTTTTTCTTAATATTTTAAAATGTTGCAGGTGGGAAGACCTACCACCTCTGCCAAGTCCCCAAATGGATTGCATAGGCCTACCATACAATGGTAAATTTTATGTTTTAACGGACCTTGTTGGGCTGTTAGAGCAGGAGACATCTGTTG</genome_strand>
        <mrna_strand>CAAATTGTTAAAGCCCTCTTTCACTTTCTATAATTTCCACAAGAAAATCGGCCCGTCGTTCTTCTTGGAGTCGCCAGAAGTTTTACTTGGATGCAGCATCACTTCAACAATCCATTGGACTAGCTGAATTTCATGACCGATTCCCAGTATCTGGAAATTTCGAGCTCTTAGAGAGTGACCTTAACAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACAATTGATCAACCGCTAATACCTGGACTACCAGATGATTTGGCATTGAGATGTCTAGCAATGATATCACATGGATATCATGGTATTCTTGAAACAGTAAGTAGACAATGGAGGAAGCTATTCCATAGTGCAGAATATTCCAATTATAAAGCTAGAGAAGGATGGTCTGGAAACTGGTTATTTGTTCTGACTGGAGCATCTGAGAATCAATGGGTTGCTTATGACCCTGAAGCTGATAGGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAGCACCTTGGTTTCTCATGTGCCTGTGTCTTGAATAAATTTCTTCTGATTGGCGGCACATATGGAGCACGTGAGCAAGTAATTCCCCATCAAACGGCCCTGACAACAAATGAAGTTTTCCAATTTGATCCTTTCAGAAAAGAGTGGAGAAATGTTGCAAGTATGAGAACAGCACGTTCTCACTTCGCCTGCAGTGTTGTCTCTGGTAAGGTTTATGTAGCTGGAGGGCGCAACACATCATCGGGAGGAGGGCTTGCTCTTGCTGAAGTATATAATCCACTGACAGACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAAGACCTACCACCTCTGCCAAGTCCCCAGATGGATTGCATAGGCCTACCATACGATGGTAAATNNTATGTTCTAACGGACCTTNGTGGGCTGCTAGAGCATGAGACATCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="37333" PGL_stop="45041"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37333" e_stop="37517"/>
            <exon e_start="38598" e_stop="39173"/>
            <exon e_start="44923" e_stop="45041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.999" e_score="0.930"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="0.969"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="37333" e_stop="37517" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37518" i_stop="38597" i_length="1080"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="38598" e_stop="39173" e_length="576"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39174" i_stop="44922" i_length="5749"/>
          </intron>
          <exon e_serial="3" e_score="0.924">
            <gDNA_exon_boundary e_start="44923" e_stop="45041" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37333" stop="37517"/>
              <exon start="38598" stop="39173"/>
              <exon start="44923" stop="45041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g16250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTGTTAAGCCCTCTTTCACTTTCTATAATTTCCACAAGAAAATCGGCCGTCGTTCTCTTGGAGTCGCCAGAAGTTTTACTCGGATGCAGCATCACTTCAACAATCCTTTGGACTAGCTGAATTTCATGACCGATTCCCTGTATCTGGAATTTTCAAGCTCTTAGAGAGTGACCTTATTAAT : GGAGACGATTGATCAACCACTAATACCTGGACTACCAGATGATTTGGCATTGAGATGTCTAGCAATGATATCACACGGATATCATGGCATTCTTGAAACAGTAAGTAGGCGATGGAGGAAGCTATTCCATAGTGCAGAATATTCCAATTATAAAGCTAGAGAAGGTTGGTCTGGTAACTGGTTATTTGTTCTGACTGGAGGATCTGAGAATCAATGGGTTGCTTATGATCCTGAAGCTGATAGGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAGCACCTTGGTTTCTCATGTGCCTGTGTCTTGAATAAATTTCTTCTGATTGGCGGCACATATGGAGCACGTGATCAAGTAATTCCCCATCAAACAGCCCTGACGACAAATGAAGTTTTCCAATTTGATCCTTTCAGAAAAGAGTGGAGAAATGTTGCAAGTATGAGAACAGCACGTTCTAACTTTGCCTGCAGTGTTGTCTCTGGTAAGGTTTATGTAGCTGGAGGGCGCAACACATCATCGGGAGGAGGACTTGTTCTTGCTGAAGTTTATAATCCACTGACAGACAA : GTGGGAAGACCTACCACCTCTGCCAAGTCCCCAAATGGATTGCATAGGCCTACCATACAATGGTAAATTTTATGTTTTAACGGACCTTGTTGGGCTGTTAGAGCAGGAGACATCTGTTG</gDNA_template>
            <first_frame> Q  I  V  K  P  S  F  T  F  Y  N  F  H  K  K  I  G  R  R  S  L  G  V  A  R  S  F  T  R  M  Q  H  H  F  N  N  P  L  D  *  L  N  F  M  T  D  S  L  Y  L  E  F  S  S  S  *  R  V  T  L  L  M :   E  T  I  D  Q  P  L  I  P  G  L  P  D  D  L  A  L  R  C  L  A  M  I  S  H  G  Y  H  G  I  L  E  T  V  S  R  R  W  R  K  L  F  H  S  A  E  Y  S  N  Y  K  A  R  E  G  W  S  G  N  W  L  F  V  L  T  G  G  S  E  N  Q  W  V  A  Y  D  P  E  A  D  R  W  H  P  L  P  R  I  P  T  S  H  P  D  Q  E  H  L  G  F  S  C  A  C  V  L  N  K  F  L  L  I  G  G  T  Y  G  A  R  D  Q  V  I  P  H  Q  T  A  L  T  T  N  E  V  F  Q  F  D  P  F  R  K  E  W  R  N  V  A  S  M  R  T  A  R  S  N  F  A  C  S  V  V  S  G  K  V  Y  V  A  G  G  R  N  T  S  S  G  G  G  L  V  L  A  E  V  Y  N  P  L  T  D  K :   W  E  D  L  P  P  L  P  S  P  Q  M  D  C  I  G  L  P  Y  N  G  K  F  Y  V  L  T  D  L  V  G  L  L  E  Q  E  T  S  V  </first_frame>
            <second_frame>  K  L  L  S  P  L  S  L  S  I  I  S  T  R  K  S  A  V  V  L  L  E  S  P  E  V  L  L  G  C  S  I  T  S  T  I  L  W  T  S  *  I  S  *  P  I  P  C  I  W  N  F  Q  A  L  R  E  *  P  Y  *   : W  R  R  L  I  N  H  *  Y  L  D  Y  Q  M  I  W  H  *  D  V  *  Q  *  Y  H  T  D  I  M  A  F  L  K  Q  *  V  G  D  G  G  S  Y  S  I  V  Q  N  I  P  I  I  K  L  E  K  V  G  L  V  T  G  Y  L  F  *  L  E  D  L  R  I  N  G  L  L  M  I  L  K  L  I  G  G  T  L  C  L  G  Y  P  R  A  T  L  T  K  S  T  L  V  S  H  V  P  V  S  *  I  N  F  F  *  L  A  A  H  M  E  H  V  I  K  *  F  P  I  K  Q  P  *  R  Q  M  K  F  S  N  L  I  L  S  E  K  S  G  E  M  L  Q  V  *  E  Q  H  V  L  T  L  P  A  V  L  S  L  V  R  F  M  *  L  E  G  A  T  H  H  R  E  E  D  L  F  L  L  K  F  I  I  H  *  Q  T   : S  G  K  T  Y  H  L  C  Q  V  P  K  W  I  A  *  A  Y  H  T  M  V  N  F  M  F  *  R  T  L  L  G  C  *  S  R  R  H  L  L </second_frame>
            <third_frame>   N  C  *  A  L  F  H  F  L  *  F  P  Q  E  N  R  P  S  F  S  W  S  R  Q  K  F  Y  S  D  A  A  S  L  Q  Q  S  F  G  L  A  E  F  H  D  R  F  P  V  S  G  I  F  K  L  L  E  S  D  L  I  N  :  G  D  D  *  S  T  T  N  T  W  T  T  R  *  F  G  I  E  M  S  S  N  D  I  T  R  I  S  W  H  S  *  N  S  K  *  A  M  E  E  A  I  P  *  C  R  I  F  Q  L  *  S  *  R  R  L  V  W  *  L  V  I  C  S  D  W  R  I  *  E  S  M  G  C  L  *  S  *  S  *  *  V  A  P  S  A  *  D  T  H  E  P  P  *  P  R  A  P  W  F  L  M  C  L  C  L  E  *  I  S  S  D  W  R  H  I  W  S  T  *  S  S  N  S  P  S  N  S  P  D  D  K  *  S  F  P  I  *  S  F  Q  K  R  V  E  K  C  C  K  Y  E  N  S  T  F  *  L  C  L  Q  C  C  L  W  *  G  L  C  S  W  R  A  Q  H  I  I  G  R  R  T  C  S  C  *  S  L  *  S  T  D  R  Q  :  V  G  R  P  T  T  S  A  K  S  P  N  G  L  H  R  P  T  I  Q  W  *  I  L  C  F  N  G  P  C  W  A  V  R  A  G  D  I  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0032K07.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37501" stop="37517"/>
                    <exon start="38598" stop="39173"/>
                    <exon start="44923" stop="45040"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVTLLMETIDQPLIPGLPDDLALRCLAMISHGYHGILETVSRRWRKLFHSAEYSNYKAREGWSGNWLFVLTGGSENQWVAYDPEADRWHPLPRIPTSHPDQEHLGFSCACVLNKFLLIGGTYGARDQVIPHQTALTTNEVFQFDPFRKEWRNVASMRTARSNFACSVVSGKVYVAGGRNTSSGGGLVLAEVYNPLTDKWEDLPPLPSPQMDCIGLPYNGKFYVLTDLVGLLEQETSV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 153 chains have been computed
$ 
$ memory statistics:
$ 2536 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2536 bytes was the average size of a spliced alignment
$ 5592 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5592 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 156 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 13:53:24
-->
