<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:40:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599792" ref_strand="+" ref_description="SGN-U599792 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tattgtaanccctactatatgcttaattgtatgtttgcntgantatgattatgtgattgtgataagataaacatgatgaaaatattgaatcccaaatcttgaaaggaaactttaatatacnttattaatgatgatgccttggtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="20282" stop="21027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20581" g_stop="20727" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-U599792" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>147</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20581" e_stop="20727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTAAACCCTACTATATGCTTAATTGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATCAAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATA</genome_strand>
        <mrna_strand>TATTGTAANCCCTACTATATGCTTAATTGTATGTTTGCNTGANTATGATTATGTGATTGTGATAAGATAAACATGATGAAAA-TATTGAATCCCAAATCTTGAAAGGAAACTTTAATATACNTTATTAATGATGATGCCTTGGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578865" ref_strand="+" ref_description="SGN-U578865 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=8e-164) Polyprotein,; (*SWP) sp|Q99315|YG31B_YEAST (e_value=2e-17) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>aagaacagcgacaaggggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcgcctagcccatctgatactagggcagtgactcctccaccgactgaggaagtaataagagaaggggaggatggggaaactgaacaagtgcagaatgagggattgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttatctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatcggaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttgggcctcattctctagcttgtttatggagaagtatatcccccgaactttgagggataggaaaagggatgagttcttgagcctagagcaaggtaggatgtcggtcaatgcatatgaggctaagtttcgtgcattatcccggtatgccacccaactgtgtttcagtccacaagagcgaattcgccggtttgtgaaggggttgaggtcagaattgcagatttcggccttacaaatagcggcaacgacaaaatccttccaagaggtggtagactttgtgatagaagtggaaggagtgaagccagacgacttcatcccgacatcgacatcaaaaaggtttcgaaagggaggtgagtttaatggtgcttacactagaggacagggttagggaagttactcagtccgaccaattcagtcttcactacagactgtagttgggggtccacctccgaccggtcaacacttctctgagagacctatgcatgaacccagagagtgctatggatgtggggagattggacatattaagagatattgtccaaaacagagttacagacctccaaaggttagaggtagaggtggtcatggcagaggccgttattctggaggacgtggcggtcgaggaaatggtggtcaccaaaacggccgaggtgatgggaaaactggagccactacatcacaacaaggtaggggcaacagacagaagaacgatagggcccattgttacgctttccctgggcggtctgaagcggaggaatctgatgctgtcatcacaggtaatcttttggtttgtgattgcatggcttctgtattgtttgatcctggatccacgttttcttatgtatcttcctcatttgctaacggtctaaatttacattgtgaattacttgatatgcctattcgtgtttctactccggtgggtgagtctgtggtagttgaaaaggtatataggtcttgtttggtgaactttgtggggagcaacacttatgtagatttggttatcttagaaatggttgattttgatgtaattctgggtatgacttggctttctccgcaatttgcgatcttggattgtaatgctaaaacggtgacattagccaagcctgggacagatccgttagtgtgggagggtgactacacttccaatccggtgcgcatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggatgacactacccaagtaccttcgattgagtcggtttctatagtctgtgagtttttggatgtgttccctgcagatcttcctggtatgccaccagatagggatattgacttctgtatcgatcttgaaccgggcacacgccccatttctatacccccttatagaatggctcccgtagagttaagagagttaaaggcccaacttcaagagttgttgagcaaaggtttcattagaccaagtgcatctccttggggtgctccgattttgtttgtgaagaagaaggatgggagttttagaatgtgcatagactacagacaactgaacaaggtaactattaagaacaagtatcctcttcctcgcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="21851" stop="24640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22151" g_stop="24341" g_length="2191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2192" r_length="2192" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-U578865" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>2191</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22151" e_stop="24341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGCGGCAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCCCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAACGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCGCCAACACCTCTGGTTTCAGAAGTACAACATGCGGCTACTATGGCTCCACGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCACGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGCGCTGAATCAGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCGTTCTCTAGATTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCAGTTAATGCTTATGAGGCTAAGTTCTGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCAGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACACCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAAGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTATAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAGCACTTCTCCGAGGGGCCTAGGATTGACTCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGA-GACATGGTGGTCGTGGTAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTCTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGACGTGACTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTCCCAATCCGGTCCGCATCGTCTCATTTCTTTGTGCTAGGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCAAATCTCAAGGATGACACTACCCAAGTACCTACGATTGAGTCAGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACAGACAACTGAATAAAGTAACTATTAAGAACAAGTATCCTCTTACTCGCATTGATG</genome_strand>
        <mrna_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAAATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCATCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTAGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAAGGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGCGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACAGACAGAAGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGAATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAACGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGCATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCTATAGTCTGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGTAGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGTTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTAGAATGTGCATAGACTACAGACAACTGAACAAGGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581303" ref_strand="+" ref_description="SGN-U581303 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-69) Polyprotein,; ">
      <seq>cacgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtctgggacaatttctcctaatatgtccaatctccccacatccataacattctctggagtcaatcataggcccctcggagaagtgttgaccggtctgaggtggtcccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctccctttcgaagcctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaagtccgggggatatacttctccataaacaaactagagaatgaggcccaagtcataggtggtgcctctattggttgacactcgatatgtgaccgccaccacattttggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcctgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcactgccctagtatcagatgggctaggtgctcgtcctcttcctctagaggacgtcctcccacgacctctaccacggccccttgccgctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="23957" stop="21852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23657" g_stop="22151" g_length="1507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1508" r_length="1508" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-U581303" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>1507</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23657" e_stop="22151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCACGACCACCATGT-CTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCCTAGGCCCCTCGGAGAAGTGCTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTATAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGGTGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCTGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACAGAACTTAGCCTCATAAGCATTAACTGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAATCTAGAGAACGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCTGATTCAGCGCCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTAAAAAGTTCGTGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGTGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCAGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTT</genome_strand>
        <mrna_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577296" ref_strand="+" ref_description="SGN-U577296 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-54) Polyprotein,; ">
      <seq>aagaacaacggtaagaggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcagtgactcctccaccgactgaggagataataagagaaggggaggatggggaaactgaacaagtgcaaaacgaggaaatgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttgtctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccacatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcagaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtcaaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttggacctcattctctagcttttttatggagaagtatatcccccggactttgagggataggaaaagggatgagttcctgagcctagagcaaggtaggatgtcggttaatgcttatgaagctaagttccgtgcactatccagatatgccacccaactatgtttcagtccacaagagcggattcgccgttttgtgaaggggttgaggtcagagttgtggatttcagccttatagatagcggctactgcaaaatccttccaagaggtggtatatttcgtggtagaggtggaaggagtgaagccagatgacttcaccacgacatcgacatcaaagaggtttcgtaagggaggtgagtttaagggttcttactctagaggacaaggttccggaggttactcagttcgaccatttcaatcttcactacagaccgtagttgggggtccacctcagaccggtcaacacttctccgagagacctatgcttgactccagagagtgttatgggtgtggggagactgggcatattaagagaaattgtccaaaacagagttatagacccccaatggctagaggtagaggtggtcatggtagaggccgtcattctggaggccgtggtggtcgacccacgggtggtcaccaagacggccgaggtgatgggcaaactggagccactacatcacaacatggtaggggcaacagacagacgaacgatatggcccattgttacgctttccctgggcggtttgaagcggaggcatctgatgctgtcatcacaggtaatcttctggtttgtgattgcacggcttctgtattttttgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="21851" stop="23875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22151" g_stop="23575" g_length="1425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1426" r_length="1426" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-U577296" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>1425</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22151" e_stop="23575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGCGGCAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCCCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAACGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCGCCAACACCTCTGGTTTCAGAAGTACAACATGCGGCTACTATGGCTCCACGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCACGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGCGCTGAATCAGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCGTTCTCTAGATTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCAGTTAATGCTTATGAGGCTAAGTTCTGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCAGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACACCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAAGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTATAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAGCACTTCTCCGAGGGGCCTAGGATTGACTCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGA-GACATGGTGGTCGTGGTAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCT</genome_strand>
        <mrna_strand>AAGAACAACGGTAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGATAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAACGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCACATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCAGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGACCTCATTCTCTAGCTTTTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAAGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTATAGATAGCGGCTACTGCAAAATCCTTCCAAGAGGTGGTATATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAGAGGTTTCGTAAGGGAGGTGAGTTTAAGGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCATTTCAATCTTCACTACAGACCGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAAGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGCCGTGGTGGTCGACCCACGGGTGGTCACCAAGACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTTTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCACGGCTTCTGTATTTTTTGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590682" ref_strand="+" ref_description="SGN-U590682 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-28) Polyprotein,; ">
      <seq>ccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcggtgactcctccacctactgaagaagtaataagagaaggggaagatggggagaatgaacaagtgcaaaatgaggaattgccaccccagcctaccccagagatgataaatcaggtgctagcttatctgagtaggttgtctaatcaaggtcaagcacctccagtgtcttctgcaccaacacctccggtttcagaggtacaacatgcagccactatggctcctcgtatggatgcctcattagatataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggttcggtgttgagttcgtgagttatcaatttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcctcattttctagtttgnttatggagaagtatatcccccggactttgaggganaggaaaagggatgagtttttgagcctagagcaaggtannatgtcggtcaatgcatangangctaagtttcgtgcactatccnnatntgccactcaactttgtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="21869" stop="23221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22169" g_stop="22921" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-U590682" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22169" e_stop="22921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCCCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAACGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCGCCAACACCTCTGGTTTCAGAAGTACAACATGCGGCTACTATGGCTCCACGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCACGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGCGCTGAATCAGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCGTTCTCTAGATTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCAGTTAATGCTTATGAGGCTAAGTTCTGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAG</genome_strand>
        <mrna_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCTACTGAAGAAGTAATAAGAGAAGGGGAAGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTAGCTTATCTGAGTAGGTTGTCTAATCAAGGTCAAGCACCTCCAGTGTCTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTTTCTAGTTTGNTTATGGAGAAGTATATCCCCCGGACTTTGAGGGANAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTANNATGTCGGTCAATGCATANGANGCTAAGTTTCGTGCACTATCCNNATNTGCCACTCAACTTTGTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="21882" stop="25031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22181" g_stop="23053" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23054" i_stop="24167" i_length="1114">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24168" g_stop="24731" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1436" r_length="563" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22181" e_stop="23053"/>
          <exon e_start="24168" e_stop="24731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCCCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAACGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCGCCAACACCTCTGGTTTCAGAAGTACAACATGCGGCTACTATGGCTCCACGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCACGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGCGCTGAATCAGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCGTTCTCTAGATTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCAGTTAATGCTTATGAGGCTAAGTTCTGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCAGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACACCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAAGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTATAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAGCACTTCTCCGAGGGGCCTAGGATTGACTCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGACATGGTGGTCGTGGTAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTCTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGACGTGACTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTCCCAATCCGGTCCGCATCGTCTCATTTCTTTGTGCTAGGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCAAATCTCAAGGATGACACTACCCAAGTACCTACGATTGAGTCAGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACAGACAACTGAATAAAGTAACTATTAAGAACAAGTATCCTCTTACTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAATGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTGGTGATGTCCTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAACGAGATTTTTAAGCCATATTTGGACCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCGGTGTCCTTCTTGGGGCACGTGGTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592109" ref_strand="-" ref_description="SGN-U592109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=5e-59) Putative; ">
      <seq>ggaaaagggatgagttcttgancctatagcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="22516" stop="24588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22816" g_stop="23016" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23017" i_stop="23759" i_length="743">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.171" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23760" g_stop="24288" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="723" r_length="522" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-U592109" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22816" e_stop="23016"/>
          <exon e_start="23760" e_stop="24288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCAGTTAATGCTTATGAGGCTAAGTTCTGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCAGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACACCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAAGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTATAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAGCACTTCTCCGAGGGGCCTAGGATTGACTCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGACATGGTGGTCGTGGTAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTCTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGACGTGACTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTCCCAATCCGGTCCGCATCGTCTCATTTCTTTGTGCTAGGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCAAATCTCAAGGATGACACTACCCAAGTACCTACGATTGAGTCAGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACAG</genome_strand>
        <mrna_strand>GGAAAAGGGATGAGTTCTTGANCCTATAGCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="25164" stop="23748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24860" g_stop="24048" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24860" e_stop="24048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACGAATCGACGGTAGTAACTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCATTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGTAAGAGGATACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTG</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="26425" stop="25333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26125" g_stop="25633" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26125" e_stop="25633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAATTTAGAAGTAAACTTCGTACCTCTATCTGATATGATGGATAGTGGAACACCATGCAATCGCACCACTTCCGAGATGTAAAGTTTGGCTAACTTTTCTACATTGTAAGTCACCTTGACTGGAATGAAATGAGCAGATTTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACAAAATCCATTGCAATTCTTTCCCACTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTTTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATGTCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGATACATCTTGGTTGCGCCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCGGAATAGTGTTGATCAAATCATCGACGCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599718" ref_strand="+" ref_description="SGN-U599718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205427|gb|ABI34389.1| (e_value=5e-23) Polyprotein,; ">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="26640" stop="25863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26340" g_stop="26164" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-U599718" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26340" e_stop="26164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATTAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCTGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATTGTCCTTTCAGACTGGCCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575181" ref_strand="+" ref_description="SGN-U575181 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|81076307|gb|ABB55392.1| (e_value=3e-54) putative; (*ATH) AT2G04520.1 (e_value=4e-54)  Symbol: None | eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative, strong similarity to translation initiation factor (eIF-1A) (Beta vulgaris) GI:17977975; contains Pfam profile PF01176: Eukaryotic initiation... ; (*SWP) sp|P56331|IF1A_ONOVI (e_value=1e-52) Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia; ">
      <seq>gttcagataaaaaggaacaagaacgccccctttttccaatttagggtttcttccttctccaatcgaagtttgagagaagcgattcaatcgaacaaccatgccgaagaacaagggtaagggaggtaagaacaggaagagaggaaagaatgaagccgatgatgagaaaagagagcttgttttcaaagaagatggacaggaatatgctcaggtccttcgtatgcttggtaatggacgatgtgaagctatgtgtattgatggaactaagcgtctttgtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctacgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaacacaagacttaatgagggcattgctaatggtcttgatgaagaggatgagggtgctggtgatgattacattgagtttgaggatgaagacattgataaaatctaatctaaactcaaaattgttgttactgaggtctatcatatgccttgctaatatttctgtggcgttctttttccttaaacattgaaaaagtatttttgtgtatcgtttgaagttgtatgattgagttttgtgcatcaaagttctgtctgaaaatttgtgctttcatgaaatgaatgcaatattctggcttgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32774" stop="35243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33073" g_stop="33424" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34943" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="728" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-U575181" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33073" e_stop="33424"/>
          <exon e_start="34568" e_stop="34943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGATAAAAAGGAACAAGAACGCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTGAAAATTTGTGCTTTCATGAAATGAATGCAATATTCTGGCTTGTTTCT</genome_strand>
        <mrna_strand>GTTCAGATAAAAAGGAACAAGAACGCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTGAAAATTTGTGCTTTCATGAAATGAATGCAATATTCTGGCTTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575186" ref_strand="-" ref_description="SGN-U575186 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147807310|emb|CAN73005.1| (e_value=6e-53) hypothetical; (*ATH) AT2G04520.1 (e_value=6e-54)  Symbol: None | eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative, strong similarity to translation initiation factor (eIF-1A) (Beta vulgaris) GI:17977975; contains Pfam profile PF01176: Eukaryotic initiation... ; (*SWP) sp|P56331|IF1A_ONOVI (e_value=4e-52) Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia; ">
      <seq>gaaccccgttttttttctatttagggttgcttccttgtccaatagatgtttgtgagaagcgattccatcgcacagccttgccgaagaacacgggtgagggagggtgagaccaggactagaggaaagaatgaagccgatgttgagaaaagagagtttgttttcaaagaagatggacaggaatatgctcaggtccttcgtatgcttggtaatggacgatgtgaagctatgtgtattgatggaagtaagggtttttgtcccatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctccgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagggtttccagagaacccacgacttaatgagggcattgttcatggttttgatgaagaggatgagggtgctggtgatgattacattgagtttggggatgaagacattgacaaaatttaatttaaactcaaaactgctgttactgaggtttttcatatcccttgctaatatttctggggcgttttttttccataaccattgaaaaagtatttttgtgtatcgtttgaagtaggaggattgagttttgggcatcaaagttctgtcggcaaaaaagggctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32803" stop="35200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33093" g_stop="33424" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34899" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="665" r_length="332" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="711"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-U575186" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575186" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33093" e_stop="33424"/>
          <exon e_start="34568" e_stop="34899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAG-GTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTGAAA</genome_strand>
        <mrna_strand>GAACCCCGTTTTTTTTCTATTTAGGGTTGCTTCCTTGTCCAATAGATGTTTGTGAGAAGCGATTCCATCGCACAGCCTTGCCGAAGAACACGGGTGAGGGAGGGTGAGACCAGGACTAGAGGAAAGAATGAAGCCGATGTTGAGAAAAGAGAGTTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAAGTAAGGGTTTTTGTCCCATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTCCGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGGGTTTCCAGAGAACCCACGACTTAATGAGGGCATTGTTCATGGTTTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGGGGATGAAGACATTGACAAAATTTAATTTAAACTCAAAACTGCTGTTACTGAGGTTTTTCATATCCCTTGCTAATATTTCTGGGGCGTTTTTTTTCCATAACCATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTAGGAGGATTGAGTTTTGGGCATCAAAGTTCTGTCGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567412" ref_strand="-" ref_description="SGN-U567412 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|64165026|gb|AAY41078.1| (e_value=1e-152) lanatoside 15-O-acetylesterase [Digitalis grandiflora]; (*ATH) AT4G01130.1 (e_value=6e-136) | Symbol: None | acetylesterase, putative, similar to lanatoside 15'-O-acetylesterase (Digitalis lanata) GI:3688284; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family | chr4:485857-488007 FORWARD | Aliases: F2N1.17, F2N1_17; (*SWP) sp|Q9FXE5|FUCO3_ARATH (e_value=1e-81) Alpha-L-fucosidase 3 OS=Arabidopsis thaliana GN=FXG1; ">
      <seq>gattttagttattattattataacaacaacttgtaataatttggtggaaagcaaatgtgcatttgaagcaatttttaattttggagattcaaatagtgatactggtggatttaatgctgcatttccatctcaagggcctccttatggaatgacttattttaaaagaccaactggaagggcaagtgatggaagagtcattgtggattttcttgctcaaggattaggtttgccatatttgagtccatatttgcaatcaattggatctgatttcagacatggtgccaactttgcaacatcagcatccacagtgctcatgccacaaacatcattatttgtgtcaggtgttagccctttttatctaggaattcaactccaacagttcaagctatttaagactaaaattgatgaatttcagagtaaaggtaacactaatctgcctccctcagacatatttgggaaatctctttacacattctatataggtcagaatgacttcagtggtgagttgggaagtaaagtaataggtggagtgaaggagtacttacctcaagtagtttcccaaattgctagcactatcaaggaaatctatggattagggggaagaacatttttggtacttaaccttgcaccaattggatgttacccagcatttttggtaaagctccctcatgaaagttctgatattgatgagtatggatgcttgatatcatacaacaatgcagttgtggactataacaatatgcttaaagatgcattggcacaaaccagaaaagatctttcagatgcaaatgttatttatgtggacactcatgctgtcctcttggaacttttccaacaccccacttcacatgggttaaaatatggaaacaaagcatgttgtggacaaggaggtggttcttacaactttaaccaagaagtatactgtggaaataccaaagagataaatggacaaacattgtcagctacagcatgtgaggatccatacaattatgtgagctgggatgggatacatgccactgaagcagcaaacaaaatcacagcaaatgtcattctcaatgaggcttctatttttgatcctccattttcactacataaattctgtgatattcagactgtaggttgatacatgatccacaagatgttataactagaagaaacgaataaatagtggtcatgtgtttaattaaaattgacattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="40822" stop="36017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40523" g_stop="40312" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40311" i_stop="38219" i_length="2093">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38218" g_stop="38009" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="422" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38008" i_stop="37919" i_length="90">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37918" g_stop="37761" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="580" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37760" i_stop="37015" i_length="746">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37014" g_stop="36744" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="851" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36743" i_stop="36666" i_length="78">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36665" g_stop="36317" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="852" r_stop="1200" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-U567412" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1200</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567412" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40523" e_stop="40312"/>
          <exon e_start="38218" e_stop="38009"/>
          <exon e_start="37918" e_stop="37761"/>
          <exon e_start="37014" e_stop="36744"/>
          <exon e_start="36665" e_stop="36317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTAGTTATTATTATTATAACAACAACTTGTAATAATTTGGTGGAAAGCAAATGTGCATTTGAAGCAATTTTTAATTTTGGAGATTCAAATAGTGATACTGGTGGATTTAATGCTGCATTTCCATCTCAAGGGCCTCCTTATGGAATGACTTATTTTAAAAGACCAACTGGAAGGGCAAGTGATGGAAGAGTCATTGTGGATTTTCTTGGTATGGTTTTATCTAATTTTTTATTCATATTTGAATCGAGGGTCTTTCGAAACAAATTCCTTATGTGCATGAGATAGGAGTAAACTCTGCGAACATTATACTTTTCCAGACTCAATTTGTGAAATTTTATAGAGTATGTTGTTGTATTCATTTTGTTCGATTGGATCTTACTATAAGTATTGATTTGATTGTTTATGCTATTTTTTTATTAGATCGTTTAAAATGGAAGGAAAACACTTTTATAGTTGAAAAGTATTTTGGTTTAGACTTTCTATTTTTTCTCTTTGAGAAGTGATTTTTAAAGTATCACAAATTTCAAAAGTTTTATAATTAATGAAATACGATTTTGATATATTTACGATAATAATTATGTTACAAAAACGTTATTTCTTTTGTAAATAGTGTTAAGTACTCAAACCATATTTCATAAAAAAAAAATGTATTTGGTATAAGAAAAGATGTATTTTTTTAAGAGATTTTTTTTTGTGTTTGGTTGATCAAAATATTTTTTTATATCATCTTTATCGATTAGTAGTAACTTATCTTATTTTCGACACTACGAAGTCCACATTTTTTTAAAAAAAGTATACTTACAGATATCCTTTGAGCAATTTGTAGTGTACATTTTTTTAAAAATGATGGGGTATTTAACATAAATTCTTTGTTAAGATTAATTAAAGGGCACAGATGTGCCATTTTGGAAGGATTGCACCCCAAGACTTAAGATGTGATGCAAACAATCTACTTTTTTTAATGTATCAATTTATATAATTTACTTTTTTTTTCATTGAGTTTGAAAATAGATTGATATATTTTTATATTTAGTAATTTTTTAAATTTAAAATGTCTTTTTTATTTTTAATTAAATAATTTCTAATTCTACAAAAAATCTATCATTTATTTTATACCATAAGTTTCCGAAGTTTTTTTTGTTCTTTCTCAAACTCGATATCATGAAGTCAAACTTCAGCATACAAAGTGAGACAAAGGAAGTATAATATAAGGGTTAGTGGTTGCTTGCTCGTTTTCATGACCTATAAATCAGACACAAACAATTCTACAATTGCTATAAGGTTTCCCTTTTTTTAGATGAAATAAAAAGCAGTTCGATGCACAAATCATCATACGTTTATGTTGGGCTAGGAGAAGGTCACAAATGAAGAAAACCATGATATAAATATTAATAATTACTTTCACGATTCAAACTCGTGACACCAATGTCATCTTTTTGTCATTAATCTCTAAATGACAAGAAAACATGTTGGTTCGAAGACAGGAGTTTTATAATTACAAGACTGGGGGAAAAGAAAAACTTAGCTGTAAAAAGCAATGTAGTTGGTCCATGTAAAGGTGTAATTATTTTTTGTTTTGTCCATAGGTTTACCTTTCTTTGTCCTACTAGTAGAAATTACAAATGAGATAAAGTCTGTGACTCTCTTTTGTCTTTTTTCTCGTAACGTTATATATAGGGAAGCAGAAATTTAGACATAAACGTGTTATTTAATTTGATATCAACTGATATTTATTTCTTTTAATTTTAGGTGTGCATAAGTAAACACTTAACCTTTTATAAAATTGAACAATAGCCTCATTCATTCTATGTGAGGTCATACATGACAATTTTATGCCCTATATAGCAGAATTAACATGTATTATGTCACGTAGGACGTATATATCTATTTATTCAATTTTATACAAGTTTCGATATGCCTAATTGTACACACTAAAAATTGAAGGGCATAAATGTCCGTTGAATCCAAGTTAAGGAACATATTTATGTTATTATGTCTTTAGGAAACCATATAAAACTATCTTTATGTAATCTATATGTCATAAGTTCGAGCTGTGAAATCAATTATTGATGTTGTATTAAGTAGGCCGCCTACAGACAATCCTTAATGAAATTTCCGACTTAGTCAATTTACACTCTTGTTACCCTGCTTGAACATGACTTGTGTGCGGTCTTTCCCCAGACTCGCTTGAACATTTCTTATGTACCCTACTTGAATTTGAGTTATATGCGGCCTTTCCTTGAACCCTGCGTAGGTTACTAATATTGCTATAAATTAATATTAGTGTTGTTTGATGTGCAGCTCAAGGATTAGGTTTGCCATATTTGAGTCCATATTTGCAATCAATTGGATCTGATTTCAGACATGGTGCCAACTTTGCAACATCAGCATCCACAGTGCTCATGCCACAAACATCATTATTTGTGTCAGGTGTTAGCCCTTTTTATCTAGGAATTCAACTCCAACAGTTCAAGCTATTTAAGACTAAAATTGATGAATTTCAGAGTAAAGGTATAATAAATAATGTACTATACTTTATTAGTATTCCATTTTTTTGTTTGTTTTTCATAATCTTTTTATATTATTTTTCTTAATTTTCAGGTAACACTAATCTGCCTCCCTCAGACATATTTGGGAAATCTCTTTACACATTCTATATAGGTCAGAATGACTTCACTGGTGAGTTGGGAAGTAAAGGAATAGGTGGAGTGAAGGAGTACTTACCTCAAGTAGTTTCCCAAATTGCTAGCACTATCAAGGTAATAATAACATTAGAATTAATATATGTTTTGCCTCAGTTTATATGACGTAGTTTAGTTCTCTACTGAGTTTTGAAGTTTTTGTCTTGAACATGTTATAATATTTGTGTGTCAATAACAACTTTTTATTAATGGTAAAATGAAAACAACGAAGAAGTAAAGTTAATTAGTTTCAATATAGAAATTGTTGAGTTCCCTACATCATTGGTTACTATTTGGTCTTGGACAATACTCACCTCATGAGAGTTTGATTCAAAGTTCACGGTGTCAAACCTTATAACCAACTCAAATCGTGGTTTACCCGGTGTTTGCCCTAGCTTTCATGCACCCCAATAAATTCTACTAGTAACAGATACCAGGTAACTCTATCCACCAAAGCTAGGATAGATGAGAAGAATCACCTAGTGTTTTTTTTTTTTTTGTCTCTGTTGAATATTGAATAGGAGACCTCAGAATTTTCAACTCACTTCATTGACCGCTATGCTAAGCATGTTGGAGTTGTTTGGTTTCCTACATCTATTATGGATTGGGAACTTGGTTACCTCATGATCTAGCTTTCAAGATTTAATTTGGATCAGGAGTCATTTTTATTTGTTATGAAACGTATTTTACATAAATAAACTAAACCACATGTTGATTTAGTAGGGTCTTAACCTTTTCTAGCATAATTAGTTGTTTTTATAACTAGATAGCTAGTGTGAAATGTCTAAATCACATGTTGATTTAATTGATATTTCTTTCACCAGGAAATCTATGGATTAGGGGGAAGAACATTTTTGGTACTTAACCTTGCACCAATTGGATGTTACCCAGCATTTTTGGTAAAGCTCCCTCATGAAAGTTCTGATATTGATGAGTATGGATGCTTGATATCATACAACAATGCAGTTGTGGACTATAACAATATGCTTAAAGATGCATTGGCACAAACAAGAAAAGATCTTTCAGATGCAAATGTTATTTATGTGGACACTCATGCTGTCCTCTTGGAACTTTTCCAACACCCCACTTCACATGGTACAGCACCTAAACATGTGATTAGATGTTTTCACTAAAATTGTTGACCAACTTCTAATGATCAATGTGTGTTTGTAGGGTTAAAATATGGAAACAAAGCATGTTGTGGACAAGGAGGTGGTTCTTACAACTTTAACCAAGAAGTATACTGTGGAAATACCAAAGAGATAAATGGACAAACATTGTCAGCTACAGCATGTGAGGATCCATACAATTATGTGAGCTGGGATGGGATACATGCCACTGAAGCAGCAAACAAAATCACAGCAAATGTCATTCTCAATGAGGCTTCTATTTTTGATCCTCCATTTTCACTACATAAATTCTGTGATATTCAGACTGTAGGTTGATACATGATCCACAAGATGTTATAACTAGAAGAAACGAATAAATAGTGGTCATGTGTTTAATTAAAATTGACATTGAT</genome_strand>
        <mrna_strand>GATTTTAGTTATTATTATTATAACAACAACTTGTAATAATTTGGTGGAAAGCAAATGTGCATTTGAAGCAATTTTTAATTTTGGAGATTCAAATAGTGATACTGGTGGATTTAATGCTGCATTTCCATCTCAAGGGCCTCCTTATGGAATGACTTATTTTAAAAGACCAACTGGAAGGGCAAGTGATGGAAGAGTCATTGTGGATTTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGGATTAGGTTTGCCATATTTGAGTCCATATTTGCAATCAATTGGATCTGATTTCAGACATGGTGCCAACTTTGCAACATCAGCATCCACAGTGCTCATGCCACAAACATCATTATTTGTGTCAGGTGTTAGCCCTTTTTATCTAGGAATTCAACTCCAACAGTTCAAGCTATTTAAGACTAAAATTGATGAATTTCAGAGTAAAG..........................................................................................GTAACACTAATCTGCCTCCCTCAGACATATTTGGGAAATCTCTTTACACATTCTATATAGGTCAGAATGACTTCAGTGGTGAGTTGGGAAGTAAAGTAATAGGTGGAGTGAAGGAGTACTTACCTCAAGTAGTTTCCCAAATTGCTAGCACTATCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCTATGGATTAGGGGGAAGAACATTTTTGGTACTTAACCTTGCACCAATTGGATGTTACCCAGCATTTTTGGTAAAGCTCCCTCATGAAAGTTCTGATATTGATGAGTATGGATGCTTGATATCATACAACAATGCAGTTGTGGACTATAACAATATGCTTAAAGATGCATTGGCACAAACCAGAAAAGATCTTTCAGATGCAAATGTTATTTATGTGGACACTCATGCTGTCCTCTTGGAACTTTTCCAACACCCCACTTCACATG..............................................................................GGTTAAAATATGGAAACAAAGCATGTTGTGGACAAGGAGGTGGTTCTTACAACTTTAACCAAGAAGTATACTGTGGAAATACCAAAGAGATAAATGGACAAACATTGTCAGCTACAGCATGTGAGGATCCATACAATTATGTGAGCTGGGATGGGATACATGCCACTGAAGCAGCAAACAAAATCACAGCAAATGTCATTCTCAATGAGGCTTCTATTTTTGATCCTCCATTTTCACTACATAAATTCTGTGATATTCAGACTGTAGGTTGATACATGATCCACAAGATGTTATAACTAGAAGAAACGAATAAATAGTGGTCATGTGTTTAATTAAAATTGACATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581187" ref_strand="+" ref_description="SGN-U581187 Tomato 200607#2 [117 ESTs aligned] (*GB) gi|5762457|gb|AAD51109.1|AF176040_1 (e_value=4e-82) ubiquitin-conjugating; (*ATH) AT5G53300.2 (e_value=1e-83) | Symbol: None | ubiquitin-conjugating enzyme 10 (UBC10), E2; identical to gi:297877, SP:P35133 | chr5:21649740-21651389 REVERSE | Aliases: None; (*SWP) sp|P35133|UBC10_ARATH (e_value=1e-82) Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10; ">
      <seq>gaaaaaaaaaagtgatatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaagccttttgtaaattctaccgtgtttattaatacggataactatagttcaacctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63951" stop="68186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64251" g_stop="64337" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="179" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="307" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="412" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67886" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="873" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-U581187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64251" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</genome_strand>
        <mrna_strand>GAAAAAAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592420" ref_strand="+" ref_description="SGN-U592420 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|125555498|gb|EAZ01104.1| (e_value=2e-18) hypothetical; (*ATH) AT4G27960.2 (e_value=4e-20) | Symbol: None | ubiquitin-conjugating enzyme E2-17 kDa 9 (UBC9), E2; identical to gi:297883, SP:P35132; identical to cDNA UBC9 for ubiquitin conjugating enzyme homolog GI:297883 | chr4:13915839-13917426 REVERSE | Aliases: None; (*SWP) sp|Q94F47|UBC28_ARATH (e_value=4e-19) Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28; ">
      <seq>acgaatattgaacgatctgacggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcgggctacaataatggggccctctgatagcccttatgctgggggtgtgtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64166" stop="65967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64466" g_stop="64524" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65585" g_stop="65667" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="142" r_length="83" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-U592420" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>142</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64466" e_stop="64524"/>
          <exon e_start="65585" e_stop="65667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTG</genome_strand>
        <mrna_strand>ACGAATATTGAACGATCTGACGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCGGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586115" ref_strand="+" ref_description="SGN-U586115 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147852634|emb|CAN83798.1| (e_value=5e-33) hypothetical; (*ATH) ATMG00820.1 (e_value=6e-27) | Symbol: ORF170 | hypothetical protein | chrM:228573-229085 REVERSE | Aliases: ORF170; (*SWP) sp|P92520|M820_ARATH (e_value=5e-26) Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820; ">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatattaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatacgaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatgaatgacgagtttaaggctttgactgatcagaaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcagatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcattcctgttattcggcaggaaaccattctcctggtactgtcactcgtcgtgcgtaacattggctcatcaatcagttggatgtttcccatgcttttcttcatggtatgcttgatgaaactatctacatgacgcaaccaccgagctatgntgatcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="88369" stop="89607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88669" g_stop="89308" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-U586115" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U586115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88669" e_stop="89308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATATACCCGCAACCACCACCCACACTCACAGCCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCTGCCCCCGAATTACCATCGCCCGTGCCACCCCCCAATACTCATCCCATCTTAACCCGTGGCAAAGCCGATATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTATTGCCTCAAAAAATGCTTATTGACGTCATTTTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCGTTCACCTGGTACTGTCACTCGTCGTGCGCAACAATTGACTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCG</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATATTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACGACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGAATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCATTCCTGTTATTCGGCAGGAAACCATTCTCCTGGTACTGTCACTCGTCGTGCGTAAC-ATTGGCTCATCAATCAGTTGGATGTTTCCCATGCTTTTCTTCATGGTATGCTTGATGAAACTATCTACATGACGCAACCACCGAGCTATGNTGATCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578561" ref_strand="+" ref_description="SGN-U578561 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|147804664|emb|CAN66637.1| (e_value=5e-131) hypothetical; (*ATH) AT2G10090.1 (e_value=4e-31) | Symbol: None | expressed protein | chr2:3830613-3830972 REVERSE | Aliases: F7B19.23, F7B19_23; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-24) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>cggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttgaagatctcatagtaaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="103493" stop="101138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103193" g_stop="101438" g_length="1756"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="1942" r_length="1758" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-U578561" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>1756</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103193" e_stop="101438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTCTTTAACAGG-TTAATTCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTTTAAATT-TTTTCCGCTTCATCTTGTTTCTGCTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAAAATAACAATCTTAAGAAATTTTA-GCAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTCATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTATTTTTTACTGTTAGTATTTTTAAATACTTAATTTATCTGCCATTTGTGACAG-AAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTACACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGTTGTTCTTCTATATCACTACGTTGGGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATAAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTTCAAGATGATCTGTACAATGTGTACAGCAATGCCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAATAAATTCATTGTGGCAAAATTTCTAGACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGATTGATCGTGGATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGTAAGGAAATGACTGTTGAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTAGATTAAATTTTATTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCAACCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGATAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATCAAGCAAACTCGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACAGCAGGGAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTCATATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAGAATGATATGTATGTAGGAAAAGGTTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTAATATGAATAAAGATTTTGCATCTTCTT</genome_strand>
        <mrna_strand>CTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTA-TTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599605" ref_strand="+" ref_description="SGN-U599605 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|111184721|gb|ABH08430.1| (e_value=5e-19) putative; ">
      <seq>tttgatgtactctggctggaattctgagtagtaccagggacctcatcacatttttcaacctcatcagcctcttcaggtagactatgattttgatcatcacagtcatttttcagttgttgttctgcatcatcttcacttccttcaattttctgcgaattgaataatttgatcacataatcttcatcatttgatccattatttttcaagcttgcatcttcatcaaatacaacatgaatgctttcttcaatgcattgagttcggacgctgaatattttgtaagccttactcgatgaagaatatccaacaaatactccttcatcactcctaagatcaaattttccagatcatccttgccattggtcagcacaaaacacctgcatgcaaattctctaagatagctgagcataggctttctgttgttgatcaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="114782" stop="113751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114482" g_stop="114051" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-U599605" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114482" e_stop="114051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGTACTCT-GATGGAATTCAGAGTAGTACCAGGTACCTCATCACACTTTTCCACTTTATCAGCCTCTTCAGGTAGACTATGATTTTGATCATCAAGGTCATTTTTCAATTGTTGATCTGCATCAGCTTCACTTCTTTCAATTTTCTGTGAATTGAACAGCTTGATCACATCATCTTCATCATTTGATCCATTATTTTTCAAGCTTCCATCTTCATCAAATACAACATGAATGCTTTCTTCAGTGCATTTGAGTTCGTTTGTTGAATATTCTGTAAGCCTTACTCGATGAAGAATATCCAACAAATACTCCTTCATCACTCCTAGGATCAAATTTTCCCAGATCATCCTTTCCATTGTTCAGCACAAAACATCTGCATCCAAATGCTCTAAGATAGCTCCGCATAGGCTTTCTGTTGTTGAGCAACTCA</genome_strand>
        <mrna_strand>TTTGATGTACTCTGGCTGGAATTCTGAGTAGTACCAGGGACCTCATCACATTTTTCAACCTCATCAGCCTCTTCAGGTAGACTATGATTTTGATCATCACAGTCATTTTTCAGTTGTTGTTCTGCATCATCTTCACTTCCTTCAATTTTCTGCGAATTGAATAATTTGATCACATAATCTTCATCATTTGATCCATTATTTTTCAAGCTTGCATCTTCATCAAATACAACATGAATGCTTTCTTCAATGCA-TTGAGTTCGGACGCTGAATATTTTGTAAGCCTTACTCGATGAAGAATATCCAACAAATACTCCTTCATCACTCCTAAGATCAAATTTT-CCAGATCATCCTTGCCATTGGTCAGCACAAAACACCTGCATGCAAATTCTCTAAGATAGCTGAGCATAGGCTTTCTGTTGTTGATCAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583983" ref_strand="+" ref_description="SGN-U583983 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|86212374|gb|ABC87760.1| (e_value=0) jasmonic; (*ATH) AT2G46370.1 (e_value=1e-143) | Symbol: None | auxin-responsive GH3 family protein, similar to auxin-responsive GH3 product (Glycine max) GI:18591; contains Pfam profile PF03321: GH3 auxin-responsive promoter | chr2:19040863-19043732 FORWARD | Aliases: F11C10.6; (*SWP) sp|Q6I581|GH35_ORYSJ (e_value=2e-152) Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5; ">
      <seq>ggtaattcccatttaaaggggaaaaatattctcaaaatttttctgttcacaacactgcatttctgccttaaactataccccaatgatttgaattcgaatttttttatctgattttataattaattttaaatataaatataaatatataaataatatatcaaaattcatatttacaattataataaattttaaattctaaattcgatgattggcccacagtggaacaatgttagctctaaatcatgccatctataaatatatatacattggcttaccattttgctcaattgtttcacaaagttttcttctctcactttatttatagtatatgtgtttttttcacttaaatccaagctgacatatatatttcccttctcttcgattctagctatcatttatcgaggaagaatataaatgaagatggtggaggaaagggagaataagtttgatccacaacaagtgattgatgaatttgagatattaagcaaagatgctgggaaaattcaagaagagaccttacaaaagattcttgaagaaaatggaaggacagaatatttgcaacaatggggtcttaatgggaaaacagatcaagtttctttcaagaattgtgttcctcttgttacacataaggatttggagccttacattcgtagaattgttaatggtgatcttactcctattctcactagaaagcctattactatcatctcgttgagttctggtacaactcaaggaaagccaaaatttgtacctttcaatgaagaattgatggaatccaccatgcaaatattcaagacttcttttgcctttaggaacagagaattcccagttgtaaatgggaaagcattacagttcatttatggaagcaaacagttcaagacgaagggaggtttagcagctggaacagccacaacaaatgtgtatcgaaattcgcaattcaagaagacaatgaaagcaatgcagaccccatgttgtagccctgatgaagtgatattcggccctgatttccatcagtccttgtactgtcatctcttgtgtggtctcattttacgtaacgaagttcaagttgtctcatctacatttgctcatagtattgtccatgcttttagacaattcgaacaagtatggcaagaacttgtttctaacataagggacggagtcctttcaagtcgcgtaaatgtcccttctataagatcagcaatgtcaaaattactcaaacctgatccagaactggctgatactatttataacaagtgcattcggttaagtaattggtacgggttgatacctgaattattccccaacacaaggtacatatatggtatcatgaccggatcaatggaaccttacttgacgaaattgaggcattatgcaggggatttacctctgcttagtgcagattacggatcttctgaaggatggatcggagcaaatgttaatcctgaattgcctcctgagctagttacttatgctgtacttcctaatattggttatttcgaattcattcctctcgtggaaaatgtagatggcgtggaggctacaccagttggtttaactgaagttaaactcgatgaagagtatgaaattgttgtcaccaatttcgctggtatgattttgttcttcccttccttggaaatacttttcatagtattgctcctgtagtttctttgtccttcaatttttattgctttctgttatttgttatacttcgattgtcatatatttactgcttttgttatgctttaacttccgttactccttttttggactgtttgtttcttgagctgagggtctattacaacctctctacctctggataaggtctgcatacactctatgctcctcagatcccatttgggaccttatgttgttattcgttttgacttgattgaatatataccgtgtaagatgcaggtttatatcgatacaggcttggtgatgtggtaaagataaaaggattccacaatcgcactcccgagctccaatttatttgtcgtaggaatctcttactaagcatcaacatcgacaaaaacactgagaaaagatttacaactagccgtggaagcagcagcacagctgctattaaacgagaagttagaagtagtcgatttctctagcaacgtaaacacatcagctgatccagggcactatgtaatcttctgggaactgaatggtgaggcaagtgaggaaattctgaaagaatgttgtaattgtttggacaaatctttcgtcgatgctggctatgttagctctcggaaggtcaaaaccatcggtgcccttgagctacggatagtgaagagagggacatttcataagattttagatcattttgtaggactaggagcagcagttagccagttcaaaactccgagatgtgtcggtacaacgaatctctctgtgctgcaaatattgactagtaatgttgttgagagctattttagtactgcatttagttgaattatatgtatgtttgttcccagaaatgtaagctgattacttttcatatcttaataatacactctgaatttgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="127028" stop="135564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127327" g_stop="127723" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127724" i_stop="129722" i_length="1999">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129723" g_stop="130035" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="716" r_length="313" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130036" i_stop="131747" i_length="1712">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131748" g_stop="131849" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="818" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131850" i_stop="133551" i_length="1702">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="133552" g_stop="135264" g_length="1713"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="2532" r_length="1714" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-U583983" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>2525</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127327" e_stop="127723"/>
          <exon e_start="129723" e_stop="130035"/>
          <exon e_start="131748" e_stop="131849"/>
          <exon e_start="133552" e_stop="135264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTCCCATTTAAAGGGGAAAAATATTCTCAAAATTTTTCTGTTCACAACACTGCATTTCTGCCTTAAACTATACCCCAATGATTTGAATTCGAATTTTTTTATCTGATTTTATAATTAA--TT---T-TAAATATAAATATATAAATAATATATCAAAATTCATATTTACAATTATAATAAATTTTAAATTCTAAATTCGATGATTGGCCCACAGTGGAACAATGTTAGCTCTAAATCATGCCATCTATAAATATATATACATTGGCTTACCATTTTGGTCAATTGTTTCACAAAGTTTTCTTCTCTCACTTTATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATTGAGGTAAGATATATTTATATTTTGTATATTCTGATACAAGGTTTTCAATATTAACGAAGTATTCGTTAATTTCTTAGGGGTTTTTTTTTTCAATATATTTTTCTTTTTGGAAGTTCTTATGTTTAATTTTGTAAAAGGGAAACATCGATATACTTAGTTACTAATTTGACAAAATTCAGTAACTTTAACTTTAAACTTTATATTTGTGTTTTATCTTCATTTGATAAGTGTATTTTATTTACTATTTTATTTTATTTCAATTTTAGGTGACAACTCTTTTGAGAATATCATTTTTTCATTGACTTGTTGAATATTTATAATAAAAAAGTTGTGATTTTGGACTTTGTAGGAGTAATTTATATGTATTTTTCTTTAATTTTTGTTTAAAATTAAAGCAAATAAAATAATTAAAAATTTATAAGGTTGGATTCTCTCTTCCAAAAAAAAAAACAGGTGAAAGGATCTAGTATAGTACTTATAGATTATCACTAGTTGGTAATTACTTTATCTATTATTAGTTGGAATCTAAGTTTATCATGATTAATTTGAGTTGTAATTGAGTTCTTTAGTTTTTAATTTGAGATGTTGGATTTGAATTTTTTTATATAAATTTTTTTAATTTGCTGCGATTGTTACCTTTAAAAATAAATTTTATAATATATAAATTTAAATTTAATCAAAATCTAATCAAAATCGTACTATTACATTGTGCGGCCATTAATTCACTTTTGTTTGGGTTCACTGAAAATCATAAATTTTATGTGTCTTTTCTTTATTTTGTTCTGTCTATTTGTTCACAGCTGTCTGAGTTCCAATGACATATTTGATAGTACTCCTATTAAAAATAAATTTAATCCACTTTTAAACAAAAATAAATTTTTATTTTATTAAAATGGTGCTACTATTTCTTTGCCTTTTTGTCAAAATGTTACCTTTTTTCGTTTTAAAAGAATGAATTTTTTTTAGTCTGTTTAAAAATTTTTTTTTTAATAATATCATAACTTTGACTTTTCACGTGGCATATTTAACACTACAAGATTAAAGTATATTTTGATATATTTAATATAACTTTAATTTTGAATCATAAAATTAAAAAATCTTCTTTATTTTCTTAAATTTCTTTTTAAGTTAAATTAGATCATTCTTTTTTAAACAAAAATTAATAATTGCTAAGCGGCCATGTGACAATGATGTGAAACTTTTAAGAGTTAGATTCAAAGTACTGCTTTTATAATTTGACCTTGGTTCTTTTTTCTATCCAATATTCATACATGGACCTTTTTTTCCCCTACTTTTGCTCTTTATTTTATTAGTAGTAGATTAATCTCCCCGTAATAACTAGTCTTAATCAAGTTGTTTATTTTATTTTTTAAGGGAAAATGACACCAAAATACTACTAAACTATATATTTATACAAAAGTAGTTATGTTGGGGTGTATTAGGTAAAAAATAATATTTAATTAATTTAAAATATTGAAAGATGATTTTTTTAGTGAAAATAAAAAAATAAGTTTCATAAATTACATACAGTACACTTCATCTTTACTATCCTCCTCCACCGGACCCCCTCCCCAACACCTTCCATCCCACTCAAAAGAACAAGTCAAAACAAAAACTTACTTGAAAATAATTTTGATAGAAAATATATTTTTCTTCGTACTGAATACACATATTATCCTTTTGCTTTATGGCTGAAAAAAGTTACCCTTCTTATCAACGAAGTGATGTAGATATGTCAAATAATAAATAAAGAAAATAATTGTGCTATTTTCAATAGTTTAAAGACATATATTCTCTGTATCACTAAATGATAAAGAATAATGTTACTAAATTGCTCTATTTTCAATAATTCAAAAGTATTTTCTATATTTTTTTCTTTTTAAAATTGTGAAATCATATTAGATAGGTAACTAATAAATTTTTCTTTTTATATTTAAAAAAATGTATTAAATAATTATTTATGAATAGAAAATAACTTTAAATCTTGATTCCGTCAATACAGGAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGCTTGATCCACAACAAGTGATTGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAAAATTCAAGAAAAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAAACAGATCAAGTTTCTTTCAAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTTGTAGAATTGTTGATGGTGATCTTACTCCTATTCTCACTAGAAAGCCTATTACTACCATCTCGTTGAGGTAATATTTTACAATTCGCATATAATTATATTCATGTATATGTTATTTTATAGTCTAAATTTATTGGTAGCTTTCTAAAGTTGGTACTAATTTTCACTTAAACATATTAACTAAATTTAATTTATTTTAGATCCCTTATGTTGAGTCTTGCTGTGTCATTTCGACACACTCTACTGACTTGCTTCATTGAGTTGTTGCACTTACTTTAAGCGCGTGAGTGAGGAGTGTTTTTTTTTTAAAAAAAATTTCCCTTCTTCTTCACTCTTCATTCCTACCACTTATTTTACCTTCCATCATGAAAAATCATGATAAATAACCTTATAAAATATGAAATAATAAAATAAAAAAATTATCACACTATTTTTAAAAATATTTACAAGAAAAAAATTTAAAACAATCATCACACTAAATTTGAAAACATTTATTAGAACAAAAGATACTCTTTTTTTCAAAAAAGAAAAATATAAGACCAATGTCATATTTGTTAGAACCTCACCTCACTATCGATAAAATAACTCTCAAAATCAAATTTACAATGAGAAAAGAAAAAAAGAAAGACTAAAATCTAATGATTTTTTTTAAAAAAATGAAAGAATAACCAAAAAATTGATGAGGAGGTTAAGGGAGACAAAAAGGATGGAAGTAAGGCCGATGGAATGGGGTGGGTGATGTAAGGAAGAGATGTGAGTGGTAGAAAATAGTAATGTGATTTAGTTTTTTTTAATAATTTATTCTAAAATTATTATTTTTCCAATAAAATGACACATGTTAACTTTTAATTAGTCATCATGTTATGTCATTAGCAAGTGATTACAAATACTTTGTAATTTTAGTTGATTATTAAAAAAGAATCAAAATGAACATAACAAGAATCCTACTTGAAGTATTTAAAATGAATAAAGCCTACTCAATTTGTTTAAGTAAAAATTAATGTCAATCATCATGAATTTCACTTATTTTATGTATAATAATATAATATATATGCAAATAACATACATTTAAAATATAAAAAGAAATAGAATCGTTCTTTTTCTTTTTTGAATTTTAACAAAAATTAACTCAAATCTTTCATCAAGCCCCCTCGAAATTAATATATAAACTACATTGTTTGTAGTAAACAATCCATCCAAATAAATAACAACTTTCCAAAAGTTAATTTTTGAAATTCTGACTCAAACTTAATTGATAACTAAACATTTTAATTTAAGTTTATTGTTTCCTTCAAAGAGTGTCTTTTAGACATTTAGAATTTTAAAAAATATTAATTACTCCTGCTATTCTAAATTAGTTATCATATTTTTTTAAAAAAAGTCAATTTGACTCACTTTCGAAATTACATTTAGATTAAACAACTCAAATATTTTATATTTACAATTTAGATATGCAATATATATATATTAATCTGATTAGAAAAAAATATTTTACAATACTAATCAGAATTTATACAGATTGATATTTGATAAACGAAATACAACAACTAATATGAGATAGAAGGAATATGTTTGTTCTATCATGACTACTTCAACTTGGGATTGAGGCGTAATTATTTTTCGTCTTCTCTTATATTATGAAGAATAGAAAATTAAAAAAAGAAACATGATTTTTTTTTTCTTCAATTGTTTTTATGGGGCTTAAAAATTGGTATTTATTTTACTACCACTATTTTTAGAAGTTGAAGAACAAAAAGTTTGATGATAATTGTTGAACTGCAGTTCTGGTACAACTCAAGGAAAGCCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAGGTAATATAATATCTTATTTATCTTTCTATGTTTTACACTATACTTTAAAAAAATTATTAATTTTTGGAGGATCGAACATATATCTGTCGGCATTTTGAAGAGTTTAAGCAATATAACTCTTTCTAATATTGGAAAAATGGGAAGTTTTTTATTTTGTTTCTACTTCTTTTTGTTTTTCTCTTAAAGTCATTGCATATCATTTGGTAATTGCCATCTTTTTCAACTCTACAGCCTCTTTTTTTTTTTGGCTAATGGCTTTTGTTTTATTTGTGGAAAAAGTTTAGTCCAATTTAATAACACAAGATGAGTTGTTTAGTTTTTTTTCTATTGGTACCAATAAATGGAAAAACAAAGTTTCTTTTCTTTTAAATAGTCTTTGTTAGAGTTATTGGCTAAAATCATTCCTTAACTATGATTTAAATTTAATTTACATCTTTATATTATCTAACTAAGTAAAAAATATTCTTATACTATACAAAAAAACTGATTGAACCAATAAAAAAATATTAGTTTGGTTTTGTCTTACCACAACGAGAAGATCAAAATTACCTAAAAAGAATAAGGATATGGGTAGAAAATGAATCTTTTTTTATCGGAATTTAAATTTGTTGTGTTGTCAGTTTATATGATTTTTGCATCATCAAGTAAATTGACTTGCAACAATACATAAGTTTTAAAATATTTATACAATAGGTTCCGATGATTAGAAATATTATGTAAAAAAAGTCATTTTAAAAGTATTACGCCCAACTTTTTAGAGATTTTCTTTAATAAAATATTTAGGAGTGTATCTACTATATATACAATGCAATTCATATTTTATACAATGTACGTAAATATTGGAAATTTAGTGAATTTACTTATGAGTTTAGTTAAGAAAATAAAATTAAGAATCACAGTATTTGAAAATTTTTAAGTTAGAGTTGTGTTTGGCCATATTTTTACAAAATTATTTAGAAATTGAATATATTTTGTCTTAATATGATTTAAATCATCAATTTCTTAAAAAAAAAAACTTAGCTTGACTTAACCACGTGTACGTATATTCATTCAACTTGACATATTTTTTGTTGGTGGCTTGAGATTTTTTAAAAAATAGACAGAAGGATGAATCTTGAAACTTTTTGGATAGTTCAGAAATGTTTTTTGTTTACTTATATAACATAAGAATGTATTTTAAGTTTATGTCATACTTCAGGATGATTTCAGTCAAATACTCGTGTTTGTTACTTTTTCTCTTGGTATCAATAAGTTGAACCTTCTAGTACAAGTGTTCAAGTTTCACATGGTGACAAGTGTGGGGACACATCTCACATTCAAACATTCGTTACACTTTACGTGTGTTGTTCAGACTCTTTAGAAATACTTTAAATAAATACATTGTGCTTAGATAATGCGACACTAACCTATTGATATTTTTAAATAGTTCAAGCAACATAACATTTCTATATAAAAAAAAAGACCTTTTGAATCTTTAATATTTTGAGATCCATATAGGCTAAAATCACTAGAAAACTGATTCTTTAACCCCTCTTGCACTCATGTTACGTCCAGCTCCTGGTGGATTAAAAACAGTATGTTGAGAATATAATTAATTAAAAAGATATGCTCTATTCAACAGTTTAAATTTTTAGATGAGATAGTCACACAAACATCAGATAAAGTTATGAAATAAGGGACAATTTATGAATTTAATTTGCAGAGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCCTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTGCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTGGTATGATTTTGTTCTTCCCTTCCTTGGAAATACTTTTCATAGTATTGCTCCTGTAGTTTCTTTGTCCTTCAATTTTTATTGCTTTCTGTTATTTGTTATACTTCGATTGTCATATATTTACTGCTTTTGTTATGCTTTAACTTCCGTTACTCCTTTTTTGGACTGTTTGTTTCTTGAGTTGAGGGTCTATTACAACCTCTCTACCTCTGGATAAGGTCTGCATACACTCTATCCTCCTCAGATCCCATTTGGGACCTTATGTTGTTATTCGTTTTGACTTGATTGAATATATACCGTGTAAGATGCAGGTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAG-AAAGATTTACAACTAGCCGTGGAAGCAGCAGCACAGCTGCTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACAACAGCTGATCCAGGGCACTATGTAATCTTCTGGGAACTGAATGGTGAGGCAAGTGAGGAAATTCTGAAAGAATGTTGTAATTGTTTGGACAAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAATTGTAAGCTGATTACTTTTCATATCTTAATAATACACTCTGAATTTGTAC</genome_strand>
        <mrna_strand>GGTAATTCCCATTTAAAGGGGAAAAATATTCTCAAAATTTTTCTGTTCACAACACTGCATTTCTGCCTTAAACTATACCCCAATGATTTGAATTCGAATTTTTTTATCTGATTTTATAATTAATTTTAAATATAAATATAAATATATAAATAATATATCAAAATTCATATTTACAATTATAATAAATTTTAAATTCTAAATTCGATGATTGGCCCACAGTGGAACAATGTTAGCTCTAAATCATGCCATCTATAAATATATATACATTGGCTTACCATTTTGCTCAATTGTTTCACAAAGTTTTCTTCTCTCACTTTATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCATTTATCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGTTTGATCCACAACAAGTGATTGATGAATTTGAGATATTAAGCAAAGATGCTGGGAAAATTCAAGAAGAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAAACAGATCAAGTTTCTTTCAAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTCGTAGAATTGTTAATGGTGATCTTACTCCTATTCTCACTAGAAAGCCTATTACTATCATCTCGTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGTACAACTCAAGGAAAGCCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCTTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTTCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTGGTATGATTTTGTTCTTCCCTTCCTTGGAAATACTTTTCATAGTATTGCTCCTGTAGTTTCTTTGTCCTTCAATTTTTATTGCTTTCTGTTATTTGTTATACTTCGATTGTCATATATTTACTGCTTTTGTTATGCTTTAACTTCCGTTACTCCTTTTTTGGACTGTTTGTTTCTTGAGCTGAGGGTCTATTACAACCTCTCTACCTCTGGATAAGGTCTGCATACACTCTATGCTCCTCAGATCCCATTTGGGACCTTATGTTGTTATTCGTTTTGACTTGATTGAATATATACCGTGTAAGATGCAGGTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAAGATTTACAACTAGCCGTGGAAGCAGCAGCACAGCTGCTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACATCAGCTGATCCAGGGCACTATGTAATCTTCTGGGAACTGAATGGTGAGGCAAGTGAGGAAATTCTGAAAGAATGTTGTAATTGTTTGGACAAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAAATGTAAGCTGATTACTTTTCATATCTTAATAATACACTCTGAATTTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588102" ref_strand="+" ref_description="SGN-U588102 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|86212374|gb|ABC87760.1| (e_value=2e-94) jasmonic; (*ATH) AT2G46370.1 (e_value=9e-69) | Symbol: None | auxin-responsive GH3 family protein, similar to auxin-responsive GH3 product (Glycine max) GI:18591; contains Pfam profile PF03321: GH3 auxin-responsive promoter | chr2:19040863-19043732 FORWARD | Aliases: F11C10.6; (*SWP) sp|Q6I581|GH35_ORYSJ (e_value=4e-74) Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5; ">
      <seq>aagaattgtgttcctcttgttacacataaggatttggagccttacattcgtagaattgttaatggtgatcttactcctattctcactagaaagcctattactatcatctcgttgagttctggtacaactcaaggaaagccaaaatttgtacctttcaatgaagaattgatggaatccaccatgcaaatattcaagacttcttttgcctttaggaacagttcatttatggaagcaaacagttcaagacgaagggaggtttagcagctggaacagccacaacaaatgtgtatcgaaattcgcaattcaagaagacaatgaaagcaatgcagaccccatgttgtagccctgatgaagtgatattcggccctgatttccatcagtccttgtactgtcatctcttgtgtggtctcattttacgtaacgaagttcaagttgtctcatctacatttgctcatagtattgtccatgcttttagacaattcgaacaagtatggcaagaacttgtttctaacataagggacggagtcctttcaagtcgcgtaaatgtcccttctataanatcagcaatgtcaaaattactcaaacctgatccagaantggctgatactatttataacaagtgcattcggnt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="129620" stop="134298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129920" g_stop="130035" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130036" i_stop="131747" i_length="1712">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131748" g_stop="131849" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="218" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131850" i_stop="133585" i_length="1736">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133586" g_stop="133998" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="631" r_length="413" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-U588102" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129920" e_stop="130035"/>
          <exon e_start="131748" e_stop="131849"/>
          <exon e_start="133586" e_stop="133998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTTGTAGAATTGTTGATGGTGATCTTACTCCTATTCTCACTAGAAAGCCTATTACTACCATCTCGTTGAGGTAATATTTTACAATTCGCATATAATTATATTCATGTATATGTTATTTTATAGTCTAAATTTATTGGTAGCTTTCTAAAGTTGGTACTAATTTTCACTTAAACATATTAACTAAATTTAATTTATTTTAGATCCCTTATGTTGAGTCTTGCTGTGTCATTTCGACACACTCTACTGACTTGCTTCATTGAGTTGTTGCACTTACTTTAAGCGCGTGAGTGAGGAGTGTTTTTTTTTTAAAAAAAATTTCCCTTCTTCTTCACTCTTCATTCCTACCACTTATTTTACCTTCCATCATGAAAAATCATGATAAATAACCTTATAAAATATGAAATAATAAAATAAAAAAATTATCACACTATTTTTAAAAATATTTACAAGAAAAAAATTTAAAACAATCATCACACTAAATTTGAAAACATTTATTAGAACAAAAGATACTCTTTTTTTCAAAAAAGAAAAATATAAGACCAATGTCATATTTGTTAGAACCTCACCTCACTATCGATAAAATAACTCTCAAAATCAAATTTACAATGAGAAAAGAAAAAAAGAAAGACTAAAATCTAATGATTTTTTTTAAAAAAATGAAAGAATAACCAAAAAATTGATGAGGAGGTTAAGGGAGACAAAAAGGATGGAAGTAAGGCCGATGGAATGGGGTGGGTGATGTAAGGAAGAGATGTGAGTGGTAGAAAATAGTAATGTGATTTAGTTTTTTTTAATAATTTATTCTAAAATTATTATTTTTCCAATAAAATGACACATGTTAACTTTTAATTAGTCATCATGTTATGTCATTAGCAAGTGATTACAAATACTTTGTAATTTTAGTTGATTATTAAAAAAGAATCAAAATGAACATAACAAGAATCCTACTTGAAGTATTTAAAATGAATAAAGCCTACTCAATTTGTTTAAGTAAAAATTAATGTCAATCATCATGAATTTCACTTATTTTATGTATAATAATATAATATATATGCAAATAACATACATTTAAAATATAAAAAGAAATAGAATCGTTCTTTTTCTTTTTTGAATTTTAACAAAAATTAACTCAAATCTTTCATCAAGCCCCCTCGAAATTAATATATAAACTACATTGTTTGTAGTAAACAATCCATCCAAATAAATAACAACTTTCCAAAAGTTAATTTTTGAAATTCTGACTCAAACTTAATTGATAACTAAACATTTTAATTTAAGTTTATTGTTTCCTTCAAAGAGTGTCTTTTAGACATTTAGAATTTTAAAAAATATTAATTACTCCTGCTATTCTAAATTAGTTATCATATTTTTTTAAAAAAAGTCAATTTGACTCACTTTCGAAATTACATTTAGATTAAACAACTCAAATATTTTATATTTACAATTTAGATATGCAATATATATATATTAATCTGATTAGAAAAAAATATTTTACAATACTAATCAGAATTTATACAGATTGATATTTGATAAACGAAATACAACAACTAATATGAGATAGAAGGAATATGTTTGTTCTATCATGACTACTTCAACTTGGGATTGAGGCGTAATTATTTTTCGTCTTCTCTTATATTATGAAGAATAGAAAATTAAAAAAAGAAACATGATTTTTTTTTTCTTCAATTGTTTTTATGGGGCTTAAAAATTGGTATTTATTTTACTACCACTATTTTTAGAAGTTGAAGAACAAAAAGTTTGATGATAATTGTTGAACTGCAGTTCTGGTACAACTCAAGGAAAGCCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAGGTAATATAATATCTTATTTATCTTTCTATGTTTTACACTATACTTTAAAAAAATTATTAATTTTTGGAGGATCGAACATATATCTGTCGGCATTTTGAAGAGTTTAAGCAATATAACTCTTTCTAATATTGGAAAAATGGGAAGTTTTTTATTTTGTTTCTACTTCTTTTTGTTTTTCTCTTAAAGTCATTGCATATCATTTGGTAATTGCCATCTTTTTCAACTCTACAGCCTCTTTTTTTTTTTGGCTAATGGCTTTTGTTTTATTTGTGGAAAAAGTTTAGTCCAATTTAATAACACAAGATGAGTTGTTTAGTTTTTTTTCTATTGGTACCAATAAATGGAAAAACAAAGTTTCTTTTCTTTTAAATAGTCTTTGTTAGAGTTATTGGCTAAAATCATTCCTTAACTATGATTTAAATTTAATTTACATCTTTATATTATCTAACTAAGTAAAAAATATTCTTATACTATACAAAAAAACTGATTGAACCAATAAAAAAATATTAGTTTGGTTTTGTCTTACCACAACGAGAAGATCAAAATTACCTAAAAAGAATAAGGATATGGGTAGAAAATGAATCTTTTTTTATCGGAATTTAAATTTGTTGTGTTGTCAGTTTATATGATTTTTGCATCATCAAGTAAATTGACTTGCAACAATACATAAGTTTTAAAATATTTATACAATAGGTTCCGATGATTAGAAATATTATGTAAAAAAAGTCATTTTAAAAGTATTACGCCCAACTTTTTAGAGATTTTCTTTAATAAAATATTTAGGAGTGTATCTACTATATATACAATGCAATTCATATTTTATACAATGTACGTAAATATTGGAAATTTAGTGAATTTACTTATGAGTTTAGTTAAGAAAATAAAATTAAGAATCACAGTATTTGAAAATTTTTAAGTTAGAGTTGTGTTTGGCCATATTTTTACAAAATTATTTAGAAATTGAATATATTTTGTCTTAATATGATTTAAATCATCAATTTCTTAAAAAAAAAAACTTAGCTTGACTTAACCACGTGTACGTATATTCATTCAACTTGACATATTTTTTGTTGGTGGCTTGAGATTTTTTAAAAAATAGACAGAAGGATGAATCTTGAAACTTTTTGGATAGTTCAGAAATGTTTTTTGTTTACTTATATAACATAAGAATGTATTTTAAGTTTATGTCATACTTCAGGATGATTTCAGTCAAATACTCGTGTTTGTTACTTTTTCTCTTGGTATCAATAAGTTGAACCTTCTAGTACAAGTGTTCAAGTTTCACATGGTGACAAGTGTGGGGACACATCTCACATTCAAACATTCGTTACACTTTACGTGTGTTGTTCAGACTCTTTAGAAATACTTTAAATAAATACATTGTGCTTAGATAATGCGACACTAACCTATTGATATTTTTAAATAGTTCAAGCAACATAACATTTCTATATAAAAAAAAAGACCTTTTGAATCTTTAATATTTTGAGATCCATATAGGCTAAAATCACTAGAAAACTGATTCTTTAACCCCTCTTGCACTCATGTTACGTCCAGCTCCTGGTGGATTAAAAACAGTATGTTGAGAATATAATTAATTAAAAAGATATGCTCTATTCAACAGTTTAAATTTTTAGATGAGATAGTCACACAAACATCAGATAAAGTTATGAAATAAGGGACAATTTATGAATTTAATTTGCAGAGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCCTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTGCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTT</genome_strand>
        <mrna_strand>AAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTCGTAGAATTGTTAATGGTGATCTTACTCCTATTCTCACTAGAAAGCCTATTACTATCATCTCGTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGTACAACTCAAGGAAAGCCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCTTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTTCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAANATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAANTGGCTGATACTATTTATAACAAGTGCATTCGGNT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588104" ref_strand="+" ref_description="SGN-U588104 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|86212374|gb|ABC87760.1| (e_value=6e-83) jasmonic; (*ATH) AT2G46370.1 (e_value=1e-68) | Symbol: None | auxin-responsive GH3 family protein, similar to auxin-responsive GH3 product (Glycine max) GI:18591; contains Pfam profile PF03321: GH3 auxin-responsive promoter | chr2:19040863-19043732 FORWARD | Aliases: F11C10.6; (*SWP) sp|Q6I581|GH35_ORYSJ (e_value=2e-66) Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5; ">
      <seq>ggttgatacctgaattattccccaacacaaggtacatatatggtatcatgaccggatcaatggaaccttacttgacgaaattgaggcattatgcaggggatttacctctgcttagtgcagattacggatcttctgaaggatggatcggagcaaatgttaatcctgaattgcctcctgagctagttacttatgctgtacttcctaatattggttatttcgaattcattcctctcgtggaaaatgtagatggcgtggaggctacaccagttggtttaactgaagttaaactcgatgaagagtatgaaattgttgtcaccaatttcgctggtttatatcgatacaggcttggtgatgtggtaaagataaaaggattccacaatcgcactcccgagctccaatttatttgtcgtaggaatctcttactaagcatcaacatcgacaaaaacactgagaaagatttacaactagccgtggaagcagcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="133713" stop="135105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134013" g_stop="134339" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134340" i_stop="134647" i_length="308">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134648" g_stop="134805" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="485" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-U588104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134013" e_stop="134339"/>
          <exon e_start="134648" e_stop="134805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTGGTATGATTTTGTTCTTCCCTTCCTTGGAAATACTTTTCATAGTATTGCTCCTGTAGTTTCTTTGTCCTTCAATTTTTATTGCTTTCTGTTATTTGTTATACTTCGATTGTCATATATTTACTGCTTTTGTTATGCTTTAACTTCCGTTACTCCTTTTTTGGACTGTTTGTTTCTTGAGTTGAGGGTCTATTACAACCTCTCTACCTCTGGATAAGGTCTGCATACACTCTATCCTCCTCAGATCCCATTTGGGACCTTATGTTGTTATTCGTTTTGACTTGATTGAATATATACCGTGTAAGATGCAGGTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCA</genome_strand>
        <mrna_strand>GGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTG....................................................................................................................................................................................................................................................................................................................GTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594026" ref_strand="+" ref_description="SGN-U594026 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gacaaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaagaatagttcaacaaattatatatccgccataacaagctcaatattaatcaatcacaagttctgcagaaaggcaataagaagatcgagaaaatacgatatcaagttcactaatgataagtgtgtaatgcaatggaatgcaatgtcaagtataatgatgcatgtctgacctagtgatatacacccgctgtctctcagtccgggacccttgggggacatatctgtccatgcatctgtcgcggcgcacgacacgatcctcgataatagtaaccatcacggcgcgcgatacgttcctcgaaatatagtatccatcgcggcgcgcgatacgtccctcgaaatggtacatcctcttaagtacccattatttctcaatgcacataacacttgccacaaccaatgcctcagaataatgcagatgacaagttcacacatataatgaggagatgaccattttcataacatcctacagttcacaaccacacaaacatcaagttacatcaacaatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="171080" stop="145383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146284" g_stop="145904" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145903" i_stop="145866" i_length="38">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145865" g_stop="145683" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="562" r_length="183" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-U594026" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146284" e_stop="145904"/>
          <exon e_start="145865" e_stop="145683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAATTACATATCCTCAACAACAACACTTTAACAAATTACATATCCTCAACAACAATACTTCAAAAAATTACATATCCGCAATAACAAACTCAATATTGATCAATCATAAGTTCAACAGAAAGGCAATCAGAAGATCAACAAAACACGATATCAAGTTCACTAATGTTAAGTATGTGCATTACAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACATGACCCTCGATAATAGTAACCATCGCGGCGCGCGATACATCCCTCGAAATATATTATCCATCGCGACGCGCGATACGTCCCTCGAAATATATTTTCCATCGCGGCGCACGATACGTCCCTCGAAATGTTACATCCTCTTAAGTACTCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCATAATAATGCAGATGACAAGTTCACACAAATAATGAGGAGATGACCATTTTCATAACATTGCACAATTCACAACCACACAAACATGAAATCACATCAACAATGATTC</genome_strand>
        <mrna_strand>GACAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATCCTCAACAAGAATAGTTCAACAAATTATATATCCGCCATAACAAGCTCAATATTAATCAATCACAAGTTCTGCAGAAAGGCAATAAGAAGATCGAGAAAATACGATATCAAGTTCACTAATGATAAG--TGTGTAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATATACACCCGCTGTCTCTCAGTCCGGGACCCTTGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGATCCTCGATAATAGTAACCATCACGGCGCGCGATACGTTCCTCGAAATATAGTATCCATCGCGGCGCGCGATAC......................................GTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCCTACAGTTCACAACCACACAAACATCAAGTTACATCAACAATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594021" ref_strand="+" ref_description="SGN-U594021 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gcagaaataaaatataagtaacttaattaaacccccaagacctgggtagtcacgtgtacaagcctctaaagtattacaagattcaaaagaaaaaaactcaagtctcaaatgaacttgtttctagaatagaacaagatcataattatggagaagaaagtctgctgagatggaaacagctacctcacaaatctccatgaagcctcggaaaagaagagactgacaagtacaacaaaaatccaggctcataacctacaaaaatttgtagaagcaaggggtgagtaccaaaccacacggtactcagcaagtaaacctctaaacataagctaaggggatgaaatacgggtactcctaccacccccaaccgaacctccacaaatacaacctgcattaaaatcaacccaacctaacagctcacaatttacatagcacatagctcaacaacaacacttaggcaaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaacaatacttcaacaaattacatatcctcaacaacaatacttcaacaaattacatatccgcaataacaagctcaatattgatcaatcacaagttccgcagaaaagcaatcaaaacatcagcgaaatacgatatcaagttcactaatggtaagtatgtgcaatgcaatggaatgcaatgtcaagtataatgatgcatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="171499" stop="145764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="171182" g_stop="170739" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="492" r_length="444" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="170738" i_stop="146275" i_length="24464">
            <donor d_prob="0.900" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146274" g_stop="146064" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="703" r_length="211" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-U594021" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="171182" e_stop="170739"/>
          <exon e_start="146274" e_stop="146064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACGTGTACAAGCCTCTAAAGTATTACAATTGATTCAAAAG--AAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATAGAACAAGATCATAATTATGGAGAAGAAAGTCTGCCGAGATGGAAACAACTACCTCACAAATCTCCAAGAAACCTCGGAAAAGAAGAGAATGACAAGTACAACAAAAATCCAGGCTCATAACCTACAAAAAAATTGTAGTAGCAA-GGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAATCTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCCAACCGAACCTCCACAACTACAACCTGCATTAAAATCAACCCAACCTAACAGCTCACAATTTACATAACACATAGCTCAATAACAACACTTAGATAAATTACATATCCTCAACAACAACACTTTCACAAATTACATATCCTCAACAACAATACTTCAACAAATTACATATCCGCAATAACAAACTCAATATTGATCAATCACAAGTTCAACAGAAAGGCAATCAGAAGATCAACAAAACACGATATCAAGTTCACTAATGTTAAGTATGTGCATTACAATGGAATGTAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCACTCAGTCCGGGACCCATGGGAGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGACCTTCGATAATAGTAACCATCGCGGCGCGCGATACGTCCCTCGAAATATATTATCCCGGCGCGCGATACGTCCCTCGAAATATATTTTCCATCGCGGCACGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACTCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCATAATAATGCAGATGACAAGTTCACACAAATAATGAGAAGATGACCATTTTCATAACATTGCACAGTTCACAACCACACAAACATGAAATCACATTAACAATGATTCAACAAGCCTTCAACCCTTTCTCAACACATCACACATAAACAATGATTCAACAAGCCTTCAACCCTTTCTCAACACATCACACATAAACAATTAATCACATTGCCTTTTGTTATCCCTTTTTTTTCATCATTAGAATTAATTAATGTGGATAAGTCAATCCATCACCAATCCTGTTACTCCCAAACATATACCACAAGGAAATACACGCATTTCATACAGTTAACAAGAGTTAAGAAATCAACTTACCTCATTTTATCGAACAATCACTTCGGGACTTTAGCCTTCCCCTTTCGTTGAACTTCCAACTCAAGGCAATCTATTCAAATAAATGACCACAATTAGATTCCAACTAACAATACTCATAATACTATATGTTTAACTTTGACCCCAAAAAAATCACCTAAGTTTATAATCAAGTTTTTCAACTCGATGTCAATTAACATGTCAACTCTCATATTTCTCAAATTCAAGCCTAGGGTTAAGTTATAATATCTCCAAGCACTACAACCCTAATAACTTTCATATATTATAATACACTCGATAATTAATTACATATCTCAATGTATTTAAAACTTGAATAATGATATAATATTGTACAATAGAAATTCGACCACGAATGATAAATCTGCAACTAACTTTTATCAGGAACTGTAACTATAGATATTATGCAGAAGTGAAAACCTTTGTAATTAATATCCCACCCATCATTCTCTTCCAATCATTGCCCTATAATCCTAGGAATAATTACGCAATCATCAACAATAGATTATTTCTCCAACTTTTTAATTACATCAACAATAACCAAAAATAGATAAAACGCCAAACCTATATTAGTTCATCGATTGAATATCAATATTTTATTATTTGCCCACTTATTTTTGTCCCCTTAAGACTCAATTCGAATAGAATACACCTAAGTGTTCACTATTTTCCTAGAAATTACGTACAAAACAACAATTATAAAAGCATAGTGAAAATACTTACCTGAAGTTAAAAGCATTCGCTGCTCATGATGTCGCTTAGGGTTTCTCCCTATTCTCTTTATTTTATCTTTTTTTTTTAAAAAAAATAATAATACTTATGTACTAAAAGTTATAAATTTAATTCACTTATTTTATTAAATATAGGCTAAACGGTATAAGGTGTTCAATAAATTATCACTTTAGCTCATTAAATATCGATTAAGTCATGCCCATCAATTAATTAACTCAAGTTAAATGAATAGTTCAAAATATTCAAAAATAAACTACCGGGTCATTACATTATCCACCACTAAAAATCATGTTCGTCCTCGAACATAAAGTAAAAGAAAGTAAAAAATTAAGGGATACCAAGAGCCTAATGTATGACCTTTAGAGTTGTGTTTCTCTCTCTAACTGAACTCATAACTAGGACTATTCCATCAAGATCAACTATCAAGAACTGAAATTTCGAATCAAAGTTTGAAAAATTTAATCAGAAGTGATTTGAATCAAGCCACAGACTAACCCATGGGACTCAACCTAAAGTGAGACTCGTTAGGCCATAGCACAATTATCATGATGAATATTTTCTCACGTAACCAAGGTAACCTTCTATATTAACATCTACTACAACCATAAGTGAACTTAAATCAATCACCACACACTCATAATACATAAATCATCACCAATCGTATCAAGATTTTCTTTTCATAACATAATCTTTTCACGAGCATAAGCTATAAAAATCTGATATTTAGACATCGGGTACTTATCAAGGGAGAATCAAACTTATCTTAACCAAAGAAGAACAACATCAAGTAAAACCCAACAAGCGGTACACTCTAGGATGCAAAACTTTTAACAACACTATTGGATAACTGTAAGTATTCACAGAAGCTCTTCTATAAGTACTCATAAGCAAGATCGTGCATGTAGAATCACTAGTATACTATAACTATCCCAAACAACACCAAATCTTCTATAACTGAATTGAACAAGTTTAACCAAGGAGGCCACCCTACCAAGAGAAAAATCACAGGATCAATACACCCGATCCACCACTAGGAACTCACCCATGGAAGTGAGAACACACATGAACTTAGAAAGTGAATCATACTCTAAACCCTATCAAAAATTAAGTAGGTGGGTCACATAAGAATATATTCAACCCCAAATCAAATAACACAATATACTTCCTCATAGCGCCCATAACAAACTTTTTCATTCATATGACTTCACCTCTTTAATTTTTAGGCACCTACAATCAATTAATCTGATCCTCATTATAGTCTTAGACATACTTGATTTATTAAATCTCAGAGTACTCCATTAAAGATACCAACAAACATCACAACCGCACAATTCATTTACCTTACTCTCAATCCGTCAGTAGTATCAACATATTCTTCGCAAACACATTGTAGCCCTTAAAAATTATCAAATATGGATTCATATCTTTTCATTTAAGCATAACATAACATATATAAGTCACACTCAAGATTGATACCACTAAATCCATATCTAAAAATACTATTCCATCGAAGTACCATAATTGAATCACACTCAATATCAACTTCATGCGATCTTTCACATACCATTTTTCAACTACTTTTCATACTATCATGTACCTCATGCGAAAACTCAAATAAATCATTGGTCTCCAATACTTATGTATACTATCATCTCATAATCTCTACTCACCATCAAATGCCTTGTAAAATATCATAATAGTTTATGTTATCTAAAAATAGTAGTTTCAATCTCCTCAAAATTCTCGATAACCCCGTATAATTGTAAGTGCAAGCCGTTGAACATTCATAAGTAACCCGTCATAATTTGAATAATCTAGCTCAACATAACCACATAGAATCTTTCACACCTAGTTATTGTCACTTAACCAAAACTCAATCTTTAGAAAAAAAAAATCAATTATAACTTCCTCGTAAGTTGGTATCGGAATAGTTCACATATCATAATCATATCTAACATCATAGGCAAATACCAATAAATCCTTTAACTACAAACCAATGGCTTATACAAGAGGTCTTATTGTTCCTTCGCCTTTCTTAAATTCTTTCCATGACAGAAATTTTAATAACTTTAACTCTTCAATACACCAAAAAAATTTCTCATTTTTGCTAACTCACTTACCAGTCTTATATTTTAGGCTGACAACCCATTATATTTGTACCTTATCTTATAAACCATAATATTACGTGAAACCCCCCTAAGATATAACAATAAAAAAATAATCAAATTTACTACTCAAATTATTTTAAGTCCTTCTAATGTTCAATACCCAGTGCAATCAATCATGTCTTACCCTTTAAATTCACACCTTAACAAAACCTATGTTACAAATGTTGACTCGATGAAAAACTCAAATTCTGATTTCAACTATGTAGCTCATTTCCATTATGTATCAACATTAGCTCATACCTTGAAGATTTTTATGAACTCACTTATCTTAGGATATCATTGATCACCTCTTCATCAACCATAACATATCTTTCGCTAAAAATTCTACCATACTCATTATCAAACTCAAAACCACAAATGAACTAAACATCATACTCGAGATGAACATCCATACACTCCTTTCAATTTTTATCCAATAGTTTTTAACCAATATGATGATCCTGTGACATTATATATTACCATAATCAAAGAAAAACATGTGAAATCACGTATTTCTAAATTCAATTCTCAACCCCTCTGAAGATACCTCTTTAACTCTTGCAGTTAAAGAAATTATTCTTATTCTCACCTCTTTTCGAATGCTACGCTATATCCCGCTAATTTATTTATTCAATTTTTCATTATGACTCTAGTCCTTTTAAATTCTACTCGAGCACTGTTCAACACCTCCTATAACTTTTCTTGCAACCCTCTACTCATCAAATAATAACAAATCATAACATTAGATACTCGCAAGTTGTCATTACCATGAAAATACGTTTAACCAACAATCTTTATCATATAGTTCACCTCAATCGTAATCCATCACGAACTCTTATTACCATCATGCTTAGTTAGCTCTAGTCATCACCACAAAGTCAACCTGTCATCGACATGACATCTCAAACCAAACTATATCAATCAAATTCAACAGACTAACTTAACTTTATACACATTTTCTTACTAAAATTTTCAATTTCCTTCACCCAAGTATACTCTTTGGAATTTCCTTTATATATAAGTTTGTCATTCCAATATTAATCCACTCGATTGGAGCTTATGATAAAATGCACATTTAGAATCTTAAGGATACACTTTATAACCTAAACTTTACATTTATATAATACCAAAGATCCACCACTAAAAGCTTCCTTATAAATAATGCTTAACACATCCATCCGTATTAATAAGCTAGTTGGTTTCTCAAATATGAATTTAACATTGAATCTCTTTATATGAGCATGTGATACAACTAATAACTCCTTATGTAGTTAGTATTCACGCTTAACAATTAACATATCTATTTTCATATACCACTAGTACCACATCGTGAAATCTGTTAAAAGTCCACCACTAAAACAGATCATCAGAAAGATCGTACCCAAATAGCCCACACATTTTTACCTACAAAATTATAAAATCATAGTGAAAATACTTACCTGAAGTTAAAAGCACTCGCTGATCATGATGTCGCTTAGGGTTTCTCCCTGTTCTCTTTATTTTATCTTCTTTTTTTTCTAAATTAATAATACTTATGTACTAAAAGTTATAAATTTAATTCACTTATTTTATTAAATATAGGCTAAACGGTATGAGGTCTTCAATAAATTATCACTTTAGCCCATTAACTATCGGTTAAGTCATATTCATCAATTAATTAACTCAAGTTAAATGAATAGTTCAAAATATTCAAAAATAAACTTCACTTTTGAAAATAAAAGAATAAAAAATACCTTCATTAATTCTTCAAATCTAACCTTCACTTTTGAAAAATTAGAGTCTCGTGCTGATAACGTGTTATAAAACTATAGAATAAGAAGAAGAAACTAAAGAGAAAAGAAGAGAAGACTTGTTATTTCTCTGAATGAATCCATTTACAATGAAGAGGAACACTCTATTTATAGGAGAAATCTAACTTGATTCCCAAGTAGAACTCTTTAACCATATCCTAAAAAAGACTCCAGATGATAGACATTCACTATAATACAAATACTTTATAAAAATTTAACTAATTTTTTCGACTATATTGTTATTTATTTGTTGTATTTGAAAAAGCAAATAAGGCATGTAAGATAAATTTTATACCAAAATGAGTGAAAAATAAATATACTCATCAAAATAATAAATAAAAGAATATTTTTGTTAATAATAAATTCAAATTATTTTTCGCTCTTGTTAGAACAAAACGAAATAGTAGCAATAAATTGCATAATTGAGGAATATTTCTATTTTTAAATCATATTCCCATAAATTTATTAAAAGATTAGTAAACTCCACTAAATTAATTATTAAATTGTTTTGAACATTTCAAGAGATTCAAATTAAAGATTTATGAGGTACACAAAATCATATATTTAATGAAAGTGATTGATATACCGTGATTTTACGATATTATTAATACTTTTTCCTCAAGTTTAGTGTGTCCAAAAGCCTTTTTTGTGCTAATTTTTGTGTAAGTTTCTCTTTATTTGCAGGAAATTTGTCTAAAAGAGGAATGCGGAGATTTTTGAGCGAGAAATACAGAAAAGTACCACCTACGGAGCTTGTGACGGTTCATCGTGCCCGTGACGGTCCGTAGGTGGCATCGTAGTACAGCTGCTCAAGGAAGATGGGGAAGTCTGACCAAGTGTGGGGTTACGGAGTGCGTGACGGACCGTCGTAGCCATGACGGTCCGTCCTGCTGGTTCGTCATGAAGTTCAGAAAAGTACTCCCAGTACCCAAATTCCAAGAGTTTAAGTGTTTTGGAACGGAGATCCTCGACGGACCGTTTTGCCTGTGACGATCCGTCATATCTGCCGTCGAGGATAATGAAGAGAGCAGAAGAAAAAATTGCACAAGTATGGGATGACGGAGTCCATGACGGTCCGTCATGACCACGACAATCCGTCGCGAGGTCCATCGAGCCAGTCGCGTTTTGACAGATTTCCAGCAAATAAAGTCCTTATGTAATTAGGTTTTTATTTTTTATAAATAGTTCGAAAAACCTCGTTTTGGAGGTTAGACTCTGGATTATTTGGTTAGGCCTTTGATTATTGTGAGACTCTTGAATATTTTGAGACTCTTGTAATTGATTGTTGGTGATTTTTGTTGATTAATCAAGCAAACTTTCAGATTTTACTCTTTCTCATTGAAGTAAGTACATGAATTCTTATACCATATATTTGAATATTGTGATTATGATTTATGACTATGGGTAACTAAACTCCATAACTAGGGTTGTGGGAACCATAGGCGAATAATGAGGTAAAACCTAACTAAAATAACAATTCTAAAATAGTGTCTTGCATGTATTGATAATTCTTTCGCTTAGAAGTCTTTTTAACGGATGGCCAACGTTAGAACTCGTCTTAATGCTACTTGTCGGACCAAGGAGGTACATAATAGGAAAAGAATTATCAACATAGATTTTGTGTATACTATCTAATCTGCTAGTATTGATTGGTACGAGGTAATAACTTAGTCAAATATCGAATATGATGCTTAATATGAGGTAAAGATAAGGGTTAGTACAGCAACACACGTAGCCGGACCAAGGTGCGGAGTGAAATTTTCTAGATGTCGTACCAAGAATTTAGAAATACATAACTTATCACTTTGCATGCAAGATACTAGGAAAGAATTGTAATAGTTAGAATTATCAAGTTATGAACCTGTGGGGAACATGTAAACCCTAGTTACTTTGACTAATTGATTACACATTCAAAGCTGTTAGTTGTCTCCTTTAATTTCGTAGTTATTTTCATTTATTTAGAAATAGAAAACCCACCTTTTATCATTTTTGCTTTCCAAGGAAGTAACTGATTGAACAATAGTAATAATAGATTGAAGTTAAGTCTAAACTATTTTCCTCGTGGGAACGATTTCAACCTCATTAGTTGGGTTATTTACTTGACATGACCGCTTTACTTCTTATTTTAGAAGTAAGTTTGAGCGTATCAAATTTTGGTGCCGCTGCCGGGGAAAGTAGCTTTTAGATTAACTTAAACTTATTACTATAGTTTAGTTGATATTTTTTTGATTTTACTTTGTTTTATTGTTTTTGATTCGTGCAGAACCACCTTCCTTGTATGCCAAATACACAGAGAGGAAGAGAACCCTTGTTTCCCTACGATCACAAATTAGAGTGTACACTACGCAACATGAATCGAAACTTGAGAATTAATGATGATGATCCAAACCAGAACATCCCAGCTCCGGTTGATGTTCATGGTCAGTTGTAACCCGATGCTCCGGGTGAACACCAACAGAGGGGAAAAAATCCCGCTTCACGGCCCTAAGCATACTACAGAGGCTATGACAACGTAGCAGACTCCGATGGGCCACTTGTCTTGCCTCCTCTACCACCAGGCCACGCCTTTATGGTAACTAGTAGCCTGATGCAAATTCTCACTACCAGAGGTTTGTTTTCAAGGATACCTTCTGAGGATCCACATTCCCATATAGCTAAGGTAAGGACAATGTGTAAAAGCTGTGTAGGGAGGCCTCACTTGTACTTGGATGTAATAGGGCTTAGAGTGTTTCCTCTCTCACTGACGGAAGAGGCTGCTATATGGTTCACTGAGCTCCCTTACAACTCAATTTTCACTTGGAACCAACTAAGGGATGTTTTCTTAGCACGCTACTATCCGGTCTCCAAGAAACTAAACCGCAAAGACAGAGTGAACAACTTTGTGGCACTACCAGGAGAGTCAGTTAGTAGTTCTTGGGATAGATTCACCTCGTTTTGGAGAAGTGTCCCAAATCACCATATATATGATGAGTCACTGAAGGAATACTTCTATCGGGGAAAAGATGATAATAATAAAGCGGTGTTAGACACTATAGCAGGTGGATCTTATGGGAAGTGTCCTTATGCTGAGATTGCTGAAAAATTAGAGAAAATCTCCCGGAATAATAAAGCTTGGAGTACTAGGAAATCAGATACCGGGAGAAATACCTTCACGTTGCAATCCACTCACAACCCAGCCATAGATGAGATTCGTGAAGAAATGGCTCAGATGAGAATTGAGCTTGGGTTGGTACTAAAACATATCACTGGGGGTGCAGAAAAGATAAATGCAGTTAACTACTTGTCTAAACCACCACCAACTAATGATGAATGTTATTATGAGGAGGATTCCTATGAAGTAAATGAGCAGATGGGGGGTTTCCGACCGAGTTCCCAAGGCTCAAATCAGGATAATTGGCGCCAAGGTCAAGGGAACCAAGGTCGGATCTATGGTAACTATAACCGTGAGGACCATTATGTCCGATATGGAAACTACAACCGCAACAACAACTTCAAAAGGGTTAACTACGGTAACAGAAATGATAGGAATGGGCCCTATGTCCCTCCTCAAAATCAAGAAGTTACTCCTAGGGATGGTGGAGGTAGTATGACGCGAGTTGAGGATATGTTGCACAAAATAATAAGGAGGTTCGATGTTAGTGATGAGCACATTAAAGAGTTAAGGTATGATTTAGCAGGTATTCAGCAAAAAGTTGATATATATGCAATAACGATTAAGCAGATCGAGTTTCAAATGGCGCAATTATCTGCGACTGTGAACACACGGCAACCGGGCACCCTTTCTAGCAACACTGTCCAAAATCCGAAAAATGATGCACACTGTATGACAATCACTACTCGGGGTGGTAAGCAAACCATTGACCCACGTATGCCGTCTAATGAGGAAAAAGTGAGAAAGGATGATAATAAGGTTGTAAAGGGTAGTGGTGAAGCAAAAGAGAGCACTGGAAAAGATGCAGAAGTCCCTATGAAGGTAATTCCTATGCCTAGACCACCACCACCCTTCCCTCAGAGATTAGTGAAAAAGACTGAGGATGGTAAATATCGCCGTTTTATAACAATGCTGAAACAGATTTTTATCAATGTCCCTTTGGTAGAAGCTCTAGAACAAATGCCCGGTTATGCCAAGTTTATGAAAGATCTGGTTACAAAGAAAAGATCGGTCACTTTCGAGGATGATGATAGAATGCAGCATTCTAGTGCTATTGCTACAAGATCTCTCGTACAAAAGAAAGAAGATCCGGGTGCGTTCACTATTCCTTGTACAGTCGGGTCATTACATTTTGCGAAAGCATTATGTGATCTGGGGGCAAGCGTAAATCTCATGCCCCTCTCGATTTACAAGAAGTTGGGTTTGGTTGACCGAAACCCCACTGCGATGTGGCTACTGATGGCTGATCGAACAGTGAAAAGGCCTATAGGGATACTCCACGATGTGCTAGTAAAAGTGGAGTCGTTCATATTTCTGGCAGATTTTGTTATTCATGATTGTGTACTCGATTTTGAAGTGCCTATTATTCTTGGGAGGTCATTCCTTGCAACAGGTAGAGCCTTAGTTTATATGGAAAAGAGGCAGATGAAATTTCGATTGAACAATGAAGAAGCGACCTTTAACATTCGTAGATCCATGAGGCAAAGTGGTGAGCTCCAATCGGTATCCTCCATATCACACAAAGAAACGATGAAGAAGGAGAATCAACAAAAAAGTGAAAATCAAGAGTTTATGGTTGGCGATTTGGGGCTTTTAGACAGTTCAAGGTTGCATTGGCTTCCGAGCAAGCTCAATTCCAAACGGACTAGCCCTTACTTGATTACCCAAGTATTCCCTCATGGAGCAGTTGAGTTAAAAACCAAGGAGGGAGTGCGGTTTAAGGTGAATAGAGAACGAATAAAACTCTATTTTGGGCATACTGCATCGGTGAATGAAGTGATATAGGCATACCATCTTGATGAAGGCTGAGTAATCAAGTGTCCTCAGTCGTGCCGCGACGTTAAATCAGGAGCTTGTTGGGAGGCAACCCAATACTTATAGTTTTTCTTTTCTTCTAGTAATGGTAGCATTTTCTACTAATGAGTTTTAAATTTGCAGCACAACACCTGGAAATTCTACAGAAAATCACTCTGCAATAGTCACCAACAGACATATGCGACGGACCGTCCTACACAACCGTTCTGGTTGTTAGAGACCCTATTCTTAAGGGTCTCTTACGTTTTCTAAGTGTCCTCCAACGGACATCTACGACGGACCGTCATACTCTCGATGGTACGACCTGCATAACCGTCATGACGGTTAGAGACCTCTCTCCTAAGGGTCTCCATTTTTTTAAGTGTCCCACGACAAACATCGACGACGGACCGTCATAATCACAATGGTCCGTGCTGATTGAGGCGCTTTGCGCTCCAGGTTTGCTTCACCTACCCCTCTTGTATTTCAATTTTTTTATGCATTGGGGACAATTGCATGTCCTTTAGTTGGGGGTGGGGTAAATGGAAAGTGAGTGCTAGGGTGAAGTCTGAGAAGCCCAATTCACACTATCCTCTTTTGGGGTTTTCTTGCCTGTGTTATTTTTCCCTAAGAGACTGATTACTTTTTCTGTTGAACCGGCTTGTGTTGTGTACATAGTTTAACTCTGAAACATGATGGCTAAACTAATATCCTAATAAAATGGAAAATGATGCATTAATGTGTGGCTCTAAGCATGACATAGAGGTACACCACCGCATGACCCTAAGTCTAAAATTCGAACTAGGCGTCTGATAATCTGGTAGAGTAATGAGATGTCAAGTGAGTGTGAGGAAGATTTGGATAGTCCACTATTTGTACTGAGCTAGAACTTGCCTGGTTAGTCCTGCTAAAAGTAAGTTGTAATAGACAATTAGGAAAGGATCATAGTCCCTTATTTAATATAGCCCATTTTTAGCCTAAATAAAAGAAAACTAAATGAAATTTATCCTTCTTTGATCCAAATGATTTGAGCTTAAACTAGATCTTTCTTTTTCACCCTAACTGATCTTTTCTGAGAATAATGTGTTGTCCCTGGTCCCTCTTTGGACATGTGCACCTCAGCTTATGCCAAAAGCATAAGTTGAGGGTGGCTAATGCAGTAAAAAAACTTTTTTTATGGCTTTGACCCAACTTTGGGTATTATGTACTTTGACTCATGGCAAAGCCATGAGTTGAGGGTGGCTATTATGAGGAATGCTATGGAAAGTGGGGTTGAAAGAACAAAGAGAAAGAAAGAACAAAAGTAAAGTGACTCAAGAATTAGTTGAAAGAAAAGTAAAGAAAAAAAATATACAAGAAATACAAGCAAGAAAAGAAGAGAGTCATTTACACAAATGAAGAAAAAAGGGAAAACAGCAAGGTAAAAGAATATGAGAAACTAGGCAAAATAAAATGATAGAAAATGGTATGTTTAGCCGATATGTCAAGGAGGGCAAAAAGTCACTAAAGTATACCTTAATATACCCTACCTGACCCTGATCCTATGTTACAAGCTAAGAAAGTCCTATCGTGATCCTAAGAGTTGTATAGCGAACTCAAAGCCGTGAAAATAAGGGCAAGCTTATGGCAATACATATGAATGAGTGTGAATTTGTTCTAAGAGTGAGTGTTGAAAAGTAATCCTTATACTCAAACTGGAATCATTGTATGAAAAATGAGGATTTTGTTTTAAAGTAAGGACACTAGTTGCAATACCATAAATATTAGCACCTCGATGAGAAATCGAAGAGGATAGGTGTTAGTGCATGGTGAGTCTGTATTATGGTCTGATTCCACATAATTCAAGCCTAATAGTGATAGCATGCATAAATATGATGAGATTGATCGGGATTGATAGCCAAATGATTGCGAAAGATAAAACATTGATACTATTGTACAAAGATTTTGTATTGAGTCATAGTGCGTCGGTCGATGACAAACAACGAATTTAAGTTGAGGGTGTTGATATACCGTGGTTTCACGGTATTATTAATACTTTTTCCTTAAGTTTAGTGTGTTCAAAAGACTTTTTGTGTTAATTCTTATGTAAGTTTCTCTTTATTTGCAGGAAATCTGTCTAAAAGAGGAATGCAGAGGTTTTTGAGCGAGAAATACAGAAAAGTACCACATACGGAGCTTGTGACAGTTCGTCGTGCATATGACGGTCCGTAGGTGGCATCGTAGTGCAGCTGTTGAAGGAAGATGGGGAAGTCTGACCAAGTGTGGGGTTATGGAGTGCGTGACTGACCGTCGTAGCCATGACGGTCCGTCCTGCTGGTTCATCATGAAGTTCAGAAAAGTATTCCTAGTACCCAAATTCCAAGTGTTTAAGTGTTTTGGAACGGAGATCCTCGACGGACTGTTGTGCCTGTGACGATCTGTCATATCTGTCGTCAAGGATAATGAAGAGAGTAGCAGAAGAAATTGCACAAGTATGAGACGACGGAGTCCATGACGGTCCGTCGTGACCACGACGATCCGTCGCGAGGTCCATCGAGCCAGCCGCGTTTTGACAGATTTCCAGCAAATAGTCTTTATGTAATTAGGTTTTTATTTTTTATAAATAGTTCGAAAAACCTTGTTTTAGAGGTTAGACTCTGGATTATTTGGTTAGGCCTTTGATTATTGTGAGACTCTTGAATATTTTGAGACTCTTGTAATTGATTGTTGGTGATTTTTGTTGATTAATCAAGGAAACTTTCAGAATTCACGGCAAATTATATTACCTGTTCCTAAAGGCAAATGAAGTCTTGAATATTTGCACGGTGGATTCCATCAATTCTTCATTGAACGGTACAAATTTTGGCTTTCCTCGAGTTGTACCAGAACTGCAGTTCAACAATTATCATCAAACTTTTTGTTCTTCAACTTCTAAAAATAGTGGTAGTAAAATAAATACCAATTTTTAAGCCCCATAAAAACAATTGAAGAAAAAATAAAATCATGTTTCTTTTTTTTATTTTCTATTCCTCATAATATAAGAAAAGATGAAAAATAATTACGCCTCAATCCCAAGTTGAAGTAGTCATGATAGAACAAACATATTCCTTTGATCTCATATTGGTTGTTGTATTTCGTTTCTCAAATATCAATTTGTATAAACTCTGATTGGTACTGTAAAATATTTTTTCTAATCAGATTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTGCGTATCTAAATTGTAAATACAAAACATTGAGTTGATCTATATAATGTAACTTCGAAAGTGAGTCAAATTAACTTTCAAAAAGAAAAACATGATAACTAATTCATAATAGCAGGAGTAATTAATATTATTTAAAATTCTAAATGTCTAAAAGGCATTCTTTAAAGGAATCAATAAATTTAAATTGAAATGTTTTGTTATCAATTAAGTTTGAGTCAGAATTTCAAAAATAAACTTTTGGAAAGTTGTTATTTATTTGGATGGAGTATTTACTACAAAAGATGTAGTTTATATATTAATTTCGAGGAGTTTTGATGAAAGATTTGAGTTAATTTTTGTTAGAATTTCATATTAAAATTCAAAAGAGATAAAAGAATGATTCTATTTGTTTTTATATTTTAAGTATATGTTATTTGCATATACAATATATTATTGTACATAAAATAAGTGAAATACATGACGTTCTCTTAAAGTTGACATTAATTTTTACTTAAACAGTTTGAGTAGGTTTTGTTCATTTTAAACACTTTAAGTAGGACTCTTGTTGTGTTATTTTGATTCTTTTTTAACAATTAGCTAAAATTACAAAGTATTTGTAATTCACTAGCTAATTACGTGATGACTAATTAGAAGTTAACATGTGTCATTTTATTATAAAAATAATAATTTTAAAATAAATTCTTTAAAAAAACTAAATGCATTACTATTTTCTACCACTCACACCTCTTCCTTACATCACCCCACCCCCATTCCATCGGCCTTACCACCATCCTTTTTGTCTCCCTTACCCTCCTCATCATTTTTTAAAAAAAAATCATTAAATTTTAGTCTTTCTTTTTTCTTTTCTCATTGTAAATTTGATTTTGAGAGTTATTTTATCGATAGTGAGGTGAGGTTCTAACAAATATGACATTGTTCTTATATTTATTTTATTTTTAAAAAAAAAGTATCTTTTGTTCTAATAAATGTTTTCAAATTTAGTGTGATGATTTTTTAAATTTTTGTTCTTGTAAATATTTTTAAAAATAGTGTAATAATTTTTTTATTTTATTTTTTCATATTTTATAAGGTTATTCATCATGATTTTTCATGATGGAAGGTAAAATAACTGGTAGGAATGAAGAGTGAAGAAGAAGGAAAAAATATTTAAGAATTCAAAAAAAAACACTCCTCACTCACGTGTTCAAAGTGAATGCAACGCACTCAAAGTAGCAAGTCAGTAGAATATGTCGAAATGATACAGCAGGACTCAACATAAGGGATCTAAAATAAACTAAATTTAGTTAATATGTCTAAGTGAAAATTAGTATCAACTTTAGAAAGCTACCAATAAATTTAGCCTATAAAATAACATACACATAAATATAATTATACGGGAATTGTAAAATATAACCTCAACGAGATAGTAGTAATAGGCTTTCTAGTTAGAATAGGAGTAAGATCACCATCAACAATTCTACGAATGTATGACTCCAAATCCTTATGTGTAACAAGAGGAACACAATTCTTGAAAGAAACTTGATCTGTTTTCCCATTAAGACCCCATTGTTGCAAATATTTTGTCCAGACCTCTAGGTTAAAGATGCACGAGTACTTACCACTACATCACAATACTTGTTTAAATTTAAATGCTTTAGTATGATTATTTATTTTTCTAATAAATTTACTAATTGATTGTTAATTTATTGGTAATATATCATTCAAGTTCAATGTTAGCTTAGTAATTGATTGATAATATTTTCAAAATATTATTAACTGAATAATTATTCAATATTTAAAATATTTATTAATTTATTACATCTAAAAATCTAAGAACACGAATATAAATCAAAAAATATTAATCAATTTTATTAGTCATATTTGAATGAAACAATGCAAAATCAATGATAACAAGTTAAATTAATCTCATTATGACACATATAATTATATCAAAAATTTAATTTGAGCACGTTTACAAAAAATATTGACAAAGTATAAATTTTGGCCAAAAGTTAAAGCGCCAAACAACACAAACTTAAAATGGAAGTCTCACAACCTGAAACAATCATCTTGTTAGATATAAAAATGATCTTTCGAATCTAATCAAACTGAAAGAATTTCATCAGAGCACATTTACAACAAATGCTAAGAAAAATTAAATTTTTGCCAAAAGTTAAAAGTTAAATCGCCTAACCGTACAAACTGAATATGAAGACCTCAAAATCCAAATCAGTCATCCTATAAAGAGAAAAGTGATCTTCCATATCCAACCGAGCTGACGAAATTCAAATTTGAGCATGTTTCCCAAAAAAATTGACCTAATTCAAATTTTAGCCAAAAGTTAAAGGTTAAAACGCTTAACAACAAAATTGAAAATAAGTCTCAAATCCCGAACTAACCATCTTATGAGATCAAAATTGAACTTATATGGCTAACTGCAGTGACAAAATTTCAATTCGAGCACGATTACGAAAAATATTGACTAAAGTGAAATTTTGGCCTAAACTTAAAAGCTAAAAGGCCAAACGACATAAACTAAAAATGGAAGCCTCAAAATACAAACCTTCTATCTTATTACATCAAAAATAATTTTTCGCATCTAATGTCTTATGTGAGTACGTTATCATATATATTGACCAAGTTAATTTTTTGCTAAAATTTATATGTTAAACACCTAATGGAACACAGTAAAAATGAAAGCCTCAAAATTCAAATCAACCATCCTACTAGATAAAAAATGACCTTAACCCTAACGAATTCTCATCTGAGCATGTTCACAAAAATATTGACCAAAGTCAAATTTTGGCCTAAACATAAATTTAAAACACATAACGACACAAACAAAAATGAAAGCCTCAAAACATGAATCAACCTTCCCGTCAGATAAGAAATGACCTTTCGAAACTAATGACACTGACGGAGTTATAATTTGAGCACATTTACCAAAAATATTCAACAAAGTAAAGTTTATGTTAAAAGTTAAAACGCCTAATGACAAAAATTAAATATGAAAGCCTTACCCCTAGACGTTGATTTACCAAAAATATTAACTTCAATTGGTAATTTACCAACTATTAAAATATGAGTTAGTAATATATACTTTATCATTAAATTTTATCAGAGTTGGTAATAGTTACTATTCAACCAAACATTCATATGTAATATTACCAACTAATAATTAATATGTTGGTAAATTTTACCAATGGATTAGTGATCGATATATTACAACTATTTTAATGATGTTAGTAATTTACTAACTACGATCTTTATTCATCGGCAAAATTTTCAACTAATTTGATATTGGTTGACAAGTTTACCAACAAATTGCATTTCGTTACTAATTTACAAACACATTTATATTTGGTTGCTAAATTTAGCAACACAATCTTGTCATTGATAAATGTTTGGTTAGTAATTCATTGGTAATATGTTAATAAATTATATAAATAATTTTGTCAAATTTACCAACCGATATATACTTCGTTCATAATATTACCAACAAAAGATGTGCGTTAGTAATATTTCTGTTGGTAATCCATTGATAAAATGTTGCTAAATTTGGCGCCATTTTTTCCCACACCGTATCTACCAACTAAGATACTTAATTAGTAAAATTTATGTTGGTAATCTGTTAGAATTTGTTGTTAAGTTTTATTATATTATTCGGTTAGAAATATGTTGGTAATTTGTTAGTAGAATACTAACCAACTTAAGTTGTTTGTAAAATTTGTTGGAAATAAGAGATTTTTTTGTAGTGATTAATTTTAGAATTCTTATAACAAAATTTGGTGTCAATACATAGATTCAACGTTTTTATCTACGACCATTTTGAACAACTCATACCCATTGACAAGTGAACTGATCCAAGCTTTCTTTATTTTGGTGGTTCAACCATACTTCACTTCTAGTTTGTCCCACATTTCTTCCGCAGTTTCACAGATTGATATTTTATTATATTCTGCTCCACTCATTGCACAATATAACAAACTTATAACTCTAACATTAGTTTGGATTACCTCTTGTTATTCTTTAGTGATGTCAAATGATTCAAGATCATATGACTTTTTGCTGCCATTTTTTCCAATTAATCTAGGAAGAGACTTTGGATCCTTCTTGATGACAATTCATGCTTGATGATTTGTTGAGGACACAAATATTCTAAATATATTTTTTCAATGAGAGTAATGGTATCCATTGAAGTATGGTCGGTGTGAGGAGTGTCCGTCTTGAAGTAACGTGCCAGAAATTTGATTGTTTGTCATTGGATTTTTGAACCTATGTGGTTAAACATTGACTTAGTGAGACCTACTCTGATACCGATTGAAAGTCAAGAGGGGGTGAATTAAAATTTCGCTTTAGTCGACTTTCTTTAATGGTCACTCACCTGCATGTTAGTAGAATTGATAAATAGTAATTATAACTTGCAGTATGTAAATAACATATAGTGTTTTTATACTAGTTCAAATCACCGATGTGGTGCGTAGTCCAATCCCCTTGGGTTACAAGGATTTCCTTAAGAGTTTGTTGAGAACTTAGGTGTTACGGAATGTTACAATTAAGAGCCCATCTGATATGAAAATCATTTCTTCTTTTTCGACACAACCTCTACCTGTATAACCTACACTCAAATCATTCTTTCTTTTTTCTTTTCAATTTTTCAGTCAAGTGAGTACAAAGTTTATGAAAATTAAAAGAAGATTACGATGTAAGTTCACGTGAAGTGTGTACTTCCCATCTAAGTCGGAGAGGGTATATCTATATATGAATAGACTTTTGCTTTTGTAAGGAAAACCTAAGAGAGTTATACTTCAATTAAGGATTTGAGGAACCCCTTGATTAGGCGATTTGCTGATCTATGTCCATATTAGATATGTACAAGGTAAATCTCATTCCTTCCTTCTTGACAGATATGATTCAATTTTGTGCTTTGGCTGAAGGATTGATCTTAAATATTTGGCTTGATATGATTTCCTTTCTTCTTTTGATGGCTTGGCTCTATTCTTGGTTTGATTGGTGATTTCTTGATCTTGTCCTGTTTTATTTGATTGAACTTTAGGTCATCTGTTTATGATTTGTTGGTTCCTTTGATTATACCTTTCCTTAATGTAGTAATTGCAAATATAAAACTATATTGTTTTCCATGTGAGTGTTTGCTTGGATCATTTTCTTACTGGATCTCTATGCCTTTATGTAGTAATTGTAAGGATCATAATATATTGCTTTCCATGTGGGTATTTGCTTGGATAGTTTCCTAATTGGATCTCCACGTCTATTAAAATTATAAGTAGTTTTTTAAGTGTCATCTATCAGAATTTACATAACATTAAAAAACTAACACTATTTTAGTAAAAAAAACAAAAATCAAAATTGTGACTTTCATTGTGTGTGGCCTAATTTTTTGAAAATATAATCATGTGTTTGTGTTGGCACTGATCTCTTTTTGAAGTTTATACTTTACACTCTAGTTCATCTCTAATTTAAAATTCTAAATTCGCCCTTAAACATATCTGATTTCTCTGACTTATGAGGCTAAGGGCCTATCAATTCTATGGTGAAAATAGCAAACTCAATTTTTCTCATCATTACAACAAATAGGTTGAGCGCCCGTTTTGATTGACTTTAAAAAGTAACTTTTAAAAAATACTTTTGAAAGTGCTGAAACTTATTTTTAAAATAAATAATTATGTGTTTGGATAAAAGTGTTGCAGTAACAAAAAAAATTGTTTATGTGTTTGACAAATAAGTGCTAATAAACATTTTTTTAATCAAAATGTCTGAAATACCCTTAAAACTGTTACCACGATAAAAAATTGATTTATTTAAGGTTTTTATCCTTTAAAAAAATTAAAAAAAAATTAATATAAATTTTACATCCATAATTAATAATATTTCCTATCATTCACATATTTTTTATCATCACAAATTAATAATAATAATAATAATAATAATAATAATAGTAATAATAATAATAATAATAATAATATATAACAATAATAATATAATATAATAATAATAACAACAACAACAACAACAACAACAACAACAATAATAATAATAATATAAGAATTAAGGGCAAAAAGGTAATATTATTTGGTCAACATAAAATGACTTTTAAGTTGAAAAAAAACACCTCTCACCGAAATTTAGCTTTTGGCTTAAAATAAGTCATTGACTTAAATAAGTCACTTTGATATTTGCAAAACACTCAAATAAGTCAAAAAGTGATTTTTAAGTAGTTTGACCAACTTTTAAGCTCATCCAAACTCATTTTAGGTGTTTTTAATCCAAAATAGTTAAACAGTTTTAAAGTATTTGAATAAAATTAAAAATTACTTATAATTATTTTAAAGCCCAAAATAACAAAAATTAGTCAAAAATCATAAGTTAGAATCCTAACTAATGATTTTTGACTTATAAGTCATAAGCCTAAGTCAATCTAAAGAGACCCTGAAAATTCCAGACCCATGAACAATGTCAGAGTACCTCACACAACTATGACATGATATGCCTCAACCATCATAAAGTATTTTTATTTTTCTCACACGTGTTTTTATTTTATTTCTTGATTAAACAACTAATTTGAATTTTAAAATTCTTTCTTATAAATCTTGTTACTTATCAGTATTTGAGTTTCTTATTCGTATTTAATTTTTTCTTACATTTTTTATTTAGTGTAAAAATGAGCAAAAAAAATAAAAAGGTATGAATTAAAAATAAATAAGGGAAAAAGTTTTTAACTAATTTTTTCGGCTATATTGTTATTTATTTGTTGTATCTGAAAAAGTAAATGAGGCATGTAAGATAAATTTTATAGCAAAATGAGTGAAAAATAAATAGAATCGTCAAAATAATAAATAAAAACTATTTTTGTAAAAAAATTAAATTATTTTTCGCTCTAGTTAGCCCAAAATGATATATTTATGTCATTTGTGTAATTGTAGGACTATATATAAATTATTTTTTATAATAAGGGCTATGTGAGCTCCAAATTGCGAAATTGAGGAATATTTCTATTTCAAAATCATATTCCCATAAATTTATTGAAAGATCAGTAAACCCCACTAAATTAATTATTATAAACTTTTTTTCTGGACATTTCAAGACATTCAAATTAAAGATTTATGAGATACACAAAATCATATATCTAATGAAAGTGATAGGTTACGAATATTTGTCTTTACCTTGAATTCTCATTGACCTACAAACATGTGTATGGAATTAGTTCCCATAATTTAGAAGTTTTGCTCCAATTTCAGTAAATGGAGATATTAGTTTTTGCTTTTGAGAAAAGATTATAAGTTAGGGCATGTTGTATGTGTTTAAAGTTTCGTTTCTCATATACTGTAAACAGGAATGAATAAATAATAAAAGAATAATATTATTTGTATTTAAATTTATGCAAAGGTTACAATCTTTATAAAATCTTTAATAAAAGATGTAATTTTCTGATTTTTCTCTTCATGGATATGTTGTTGATTTGACGGAATACTTGCAACTCAATACTTGAAGCGAAAACTTCTTTGCATGAGGAAAACAGCTCAACACTTGGAGCAAAGACTTGCGGAAGCCGACTCAACATTTGGAGCAAAAACTTCTTTGTATACAGAAGAAACTACGTATTTTTGTATGTATGTATCTCTGTGTATATCCTCTTTTGGTCAGAAGAAGACCTCTTTATATAGGCTTGAATTAGGACTTCAGGGATATTTTGGTTCGAGCAACTTTGATCCCTAAGCCTGAAGAACACATCTTGTCAACTTAATAGACTTGTTCCCAATGTAATTTGAACTTGATTTAAGTTATATAATTTTGACTTAAATATTAATTCGACTTTATTAACCAGTAATCAACGTATCATAAATTTAAATTTTAATTCAAAATTTAATAGAAATTTATCAATAAAACTTCACAGTGTTATTGATTCTATCATATTTGACAAAATAACTTTTCTTGTACAAATTATTTAATCTTTAATAAGATCAAGCTTTTTTCTAAAAAAAAAGAAGTTATAATTCTCTACAAGCACATCTACTAGATTAAAAAGGGCTATGTACAAAAGTGAGCTTAGCCAAAAGTATTAAATCCCAAAAGCCAATTAGAACTATTAATTAATTGAGAAAACAATAATAAATTTTACTTGATGATAAATGAATATAATTTGATTTGTATGAGTTGAATTATAGGATAGTATTGCATGTATTATGAGTTGATTTATTTATAAAGTATCTTTTAACATTTAATGTATATGTATGTCACAATTTTCAATTATATTATATATACTAGAAAAAAATGAATTGAAATTTTTAAATGAATAATATAAAAAAATTTAAATGGTTTCCCAATTATTCATTTCTCAGAAAATCATTTATTACGGTAAAAAGGTTAAAAAAGAAAATTCTAAAATTGAGTGACTTATTTTCAATTTGATTTAGAAAAATAAGGGAGTCAGAACTGAAAATATGTACTATGAGTATGAGGAGAGAAAGATTATGATTATTATCTCACTATCATACAAATATATATTGTGAAATATAGATAAGATGGAATAGAAACAGACTATCTTGATACACGTAAACAAATGAAGTTTTTCTTTCTCATAATAATTCTCCAACATTTTTTTATTCTTTCATTTATTCCAAATGTATCAAGATAGTCATCATCCTTAATAATAATTTTTTTATGATAGTGGAGAAAATAATCACAATTTTTGTCTCTTCACAACTGTATTTTTATTATAAAACTATTCACTCTTATGCAAAGAGTCAATTTAAAAAGTCTATTATATATGCAAAGCGCCAAAATAAATAGTTATATATGTAAAGAGTCGGTATCTTATTATATAATTTGAGAAAAGTTCTTCTAAGTTAATAAATTGCTATCCATCTATTGTAATGGAATACATTGGTTCTTGTTCTTGAAAAAATTATTGATAGATAATAAATTCTTGGTAATTTAATTTAAAATTCTAAAATATTAAAGAACGTTCTACTATCTTTAACTAAAAAGTTAAGAATTAAAAATAAGGTTTATTGCATAAATATTAATTGTAACATATAATATTTTAGCCAAACTCATAAACAAATTCCTAAGCTTGTTGGGTTTTTTCCCTCAAATACCTCAACTATGTTATTTTCCGATTAAATCATTAAACTACCCATAATTTGTTTCTTTTGAAAATTGTTGGTTGATTTCGATCGACATTTCTATTCTAAATGCCTTCAATTGTGCTCTTATTATAATGATTTTCATTGAAGGAATAAAGACAAATTGTCTTGTTTGTTTTTTAATTTGTTCAAAATGACTTGAAGTAAACACAATTATTCTCGAATATTTTCACTATTAATTGGACTAATGAGTTGGGAACAACATATATATCCTTTCCACCAATACCCTCATAAAATTTGATTCCTCATCAACCAACGGTGTTTAAAATGAACAAATTATGGGTAATTTAATGCTTTAATAGAAAAATAACATAGTTAAACTAGTTGAGTAGAAAAACTCAACAAATTTAGAGATATTTATATATTTGTCCTAATATTTTTCTAGTGATTAAAGAATTTTTTACCGAAGAATTAAAACTAAACTTATAAAAATGAAATAAAGGCTTGATAATGTGGAAAGAAGAGTGCATTCTTATGCCAATATAGAAGAAAAATTATAATTAAAAAATTAGGAATAATATGAGAAACCTTTCTTCAGGTTTCACTTTATAATACTCACTTTCTCTATGATTTACAATATTAAATCTATCTTCTTTAGTTTAATATTTTTAAAGCTACTTTTTTAATTTTATTTAAAAAAATATAAATCAATTATGACCTGACAAATTTGCTCTTCTTTATATTGATTTTTTTTGTATTTTTCCATATTATTTTACATTACTAATTTAAAATAATTAATCAACAAAAATAATAGTATATTATATATACATATACGTTTTTTGCCAAAAAAAAAAAAGATAAACATTTCTTCATGGGTAATTTCTTATTGTTAATGTATTTATTAAATAAGTCACATTTTTTAATAATATGGTTTGATAGGAAGAAATTAATATAAAGAGGAGCAAATTTGTCAAATAGTAATATATTTATATTTATTTTAAATAAGTTTAAAGAATAATTTCACAAAAATTATCTCTCTAAAATTATCTCAAAAACTTATTATTAAAAAACATGGAGATGATATTTAAATATACATAATATTCCACTTGATAGACATTTTATCTGCATAAAAAGAAATAATTCTACATTATTTTCTTTTATGGATTAAATAATTTTTTTGTCACGATCCAAAAATGGACGCGATGGCACTCGTCTTATCCCACCAAGACAAGTCAGCCTAAAACTACAATAAAATACGAAAAATTTATAAGTTACTTAAAAGTACCTCCAAAATCTGGTTGTCAGGTGTACAAGCCTCTAAAGTATTACAATTGATTCAAAAGAAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATTTGACAAGATCATAATTATGGAGAAGAAAGTCTGATGAGATGGAAACAACTGCCTCACAAATCTCCAAGAAGCCTCGGAAAAGAAGAGAATGACAAGTAAAACAAAAATCCAGGCTCATAACCTACAAAAAAATTGTAGTAGCAAGGGTGAGTACCAAACCACACGGTACTCAACAAGTAAATCTCTAAACACAAGCTAAGGGGATGAAATACTGGTACTCCTACCACCCCCAACCAAACCTCCACAACTACAACCTGCATTAAAATCAACCCAACCTAACAGCTCACAGTTTACATAACACGTAGCCCAACAACAACACTTAGACAAATTACATATCCTCAACAACAACACTTTAACAAATTACATATCCTCAACAACAATACTTCAAAAAATTACATATCCGCAATAACAAACTCAATATTGATCAATCATAAGTTCAACAGAAAGGCAATCAGAAGATCAACAAAACACGATATCAAGTTCACTAATGTTAAGTATGTGCATTACAATGGAATGCAATGTCAAGTATAATGATGCATGTCT</genome_strand>
        <mrna_strand>GTCACGTGTACAAGCCTCTAAAGTATTACAA--GATTCAAAAGAAAAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATAGAACAAGATCATAATTATGGAGAAGAAAGTCTGCTGAGATGGAAACAGCTACCTCACAAATCTCCATGAAGCCTCGGAAAAGAAGAGACTGACAAGTACAACAAAAATCCAGGCTCATAACCTAC-AAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAACCTCTAAACATAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCCAACCGAACCTCCACAAATACAACCTGCATTAAAATCAACCCAACCTAACAGCTCACAATTTACATAGCACATAGCTCAACAACAACACTTAGGCAAATTACATATCCTCAACAACAACACTTCAACAAATTAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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ACAAGCTCAATATTGATCAATCACAAGTTCCGCAGAAAAGCAATCAAAACATCAGCGAAATACGATATCAAGTTCACTAATGGTAAGTATGTGCAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="178800" stop="177876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="178501" g_stop="178176" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="178501" e_stop="178176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTCCCAGGCTTGGCTAACGTTACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGAAAGACAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGAAAAGACCTATATACCTTTTCAACTATCACAGACTCACCCACCGGAGTACAAGCACGAATAGGCATGTCAAGCAATTCACAATTTAAATTAAGTCCAGTAACAAATGCGGAAGATACATATGAAAATGTGGAGCCAGGGTCAAATAATACAGAAGCCATACAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592023" ref_strand="+" ref_description="SGN-U592023 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-56) Putative; ">
      <seq>ttacttcggcacgaggatttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="177898" stop="179138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="178198" g_stop="178838" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="654" r_length="638" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-U592023" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="178198" e_stop="178838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGACCCTGGCTCCACATTTTCATATGTATCTTCCGCATTTGTTACTGGACTTAATTTAAATTGTGAATTGCTTGACATGCCTATTCGTGCTTGTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTATATAGGTCTTTTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGTCTTTCTCCAAATTTTGCAATCTTAGATTGTAATGCTAAAACTGTAACGTTAGCCAAGCCTGGGACAGATCCGTTAGTATGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTCCTTCGTGCTAAGAGAATGGTTAGAAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCGATTGAGTCGGTTTCAATAGTCCGTGAGTTTCTTGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGTATTGATCTGGAGCCGGGCACTCGCCCCATTTCCATACCCCCCTTATAGGATGGCTCCCGCTGAGCTAAGTGAGCTAAAGGCGCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATT</genome_strand>
        <mrna_strand>ATTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATA-CCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>25</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="20581" PGL_stop="20727"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20581" e_stop="20727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="20581" e_stop="20727" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20581" stop="20727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTGTAAACCCTACTATATGCTTAATTGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATCAAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATA</gDNA_template>
            <first_frame> H  C  K  P  Y  Y  M  L  N  C  M  F  A  *  I  *  L  C  D  C  D  K  I  S  M  I  K  N  I  E  S  Q  I  L  K  R  N  F  N  I  H  Y  *  *  *  C  L  G  I </first_frame>
            <second_frame>  I  V  N  P  T  I  C  L  I  V  C  L  H  E  Y  D  Y  V  I  V  I  R  *  A  *  S  K  I  L  N  P  K  S  *  K  E  T  L  I  Y  I  I  N  D  D  A  L  V   </second_frame>
            <third_frame>   L  *  T  L  L  Y  A  *  L  Y  V  C  M  N  M  I  M  *  L  *  *  D  K  H  D  Q  K  Y  *  I  P  N  L  E  K  K  L  *  Y  T  L  L  M  M  M  P  W  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0034P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="22151" PGL_stop="24731"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22151" e_stop="24341"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="22151" e_stop="24341" e_length="2191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22151" stop="24341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22151" stop="23575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22169" stop="22921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACAGCGGCAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCCCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAACGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCGCCAACACCTCTGGTTTCAGAAGTACAACATGCGGCTACTATGGCTCCACGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCACGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGCGCTGAATCAGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCGTTCTCTAGATTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCAGTTAATGCTTATGAGGCTAAGTTCTGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCAGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACACCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAAGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTATAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAGCACTTCTCCGAGGGGCCTAGGATTGACTCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGACATGGTGGTCGTGGTAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTCTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGACGTGACTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTCCCAATCCGGTCCGCATCGTCTCATTTCTTTGTGCTAGGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCAAATCTCAAGGATGACACTACCCAAGTACCTACGATTGAGTCAGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACAGACAACTGAATAAAGTAACTATTAAGAACAAGTATCCTCTTACTCGCATTGATG</gDNA_template>
            <first_frame> K  N  S  G  K  G  P  W  *  R  S  W  E  D  V  L  *  R  K  R  T  S  T  *  P  I  *  Y  *  G  S  D  S  P  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  K  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  R  S  G  T  S  S  V  F  C  A  N  T  S  G  F  R  S  T  T  C  G  Y  Y  G  S  T  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  R  T  F  *  *  V  L  E  I  E  T  S  G  L  Q  G  R  *  I  R  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  R  V  S  T  N  R  G  T  T  Y  D  L  G  L  V  L  *  I  V  Y  G  E  V  Y  P  P  D  F  E  G  *  E  K  G  *  V  P  E  P  R  A  R  *  D  V  S  *  C  L  *  G  *  V  L  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R  G  G  R  L  C  D  R  S  G  R  S  E  A  R  R  L  H  H  N  T  D  I  K  K  A  S  K  G  R  *  V  *  W  F  L  H  *  R  T  R  F  G  K  L  L  S  P  T  N  S  V  F  T  I  D  C  S  W  G  T  T  S  D  R  S  A  L  L  R  G  A  *  D  *  L  Q  R  M  L  W  M  W  G  D  W  T  Y  *  E  K  L  S  Q  T  K  L  *  T  P  N  S  *  R  *  R  W  S  W  *  R  P  L  F  W  R  H  G  G  R  G  N  G  G  H  Q  N  G  R  G  D  G  Q  T  G  A  T  T  S  Q  H  G  R  G  N  G  Q  T  N  D  R  A  H  C  Y  A  F  P  G  R  S  E  A  E  A  S  D  A  V  I  T  G  N  L  L  V  C  D  C  M  A  S  V  L  F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  N  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  V  V  E  K  V  Y  R  S  C  L  V  N  F  V  G  S  N  T  Y  V  D  L  V  I  L  E  M  D  D  F  D  V  T  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  P  N  P  V  R  I  V  S  F  L  C  A  R  K  M  I  S  K  G  C  L  A  F  L  A  N  L  K  D  D  T  T  Q  V  P  T  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  T  R  I  D  </first_frame>
            <second_frame>  R  T  A  A  R  G  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  E  T  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  L  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  M  T  W  A  S  F  S  R  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  C  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  Q  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K  P  D  D  F  T  T  T  P  T  S  K  R  L  R  K  G  G  E  F  N  G  S  Y  T  R  G  Q  G  S  G  S  Y  S  V  R  P  I  Q  S  S  L  *  T  V  V  G  G  P  P  Q  T  G  Q  H  F  S  E  G  P  R  I  D  S  R  E  C  Y  G  C  G  E  I  G  H  I  R  K  N  C  P  R  Q  S  Y  R  P  P  I  A  R  G  R  G  G  H  G  R  G  R  Y  S  G  D  M  V  V  V  V  M  V  V  T  K  T  A  E  V  M  G  K  L  G  P  L  H  H  N  M  V  G  A  T  D  R  Q  T  I  G  P  I  V  T  L  S  L  G  G  L  K  R  R  H  L  M  L  S  S  Q  V  I  F  W  F  V  I  A  W  L  L  Y  C  L  I  L  D  P  R  F  L  M  Y  L  P  H  L  L  M  V  *  I  Y  I  V  N  Y  L  I  C  L  F  V  S  L  L  R  W  V  S  L  W  *  L  K  R  Y  I  G  L  V  W  *  T  L  W  G  A  T  L  M  *  I  W  L  S  *  K  W  M  I  L  T  *  L  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  T  R  *  C  G  R  V  T  T  L  P  I  R  S  A  S  S  H  F  F  V  L  G  K  *  L  V  K  G  V  *  L  S  W  Q  I  S  R  M  T  L  P  K  Y  L  R  L  S  Q  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T  D  N  *  I  K  *  L  L  R  T  S  I  L  L  L  A  L  M </second_frame>
            <third_frame>   E  Q  R  Q  G  A  V  V  E  V  V  G  G  R  P  L  E  E  E  D  E  H  L  A  H  L  I  L  G  Q  *  L  P  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  K  M  R  K  R  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  K  V  R  H  L  Q  C  F  L  R  Q  H  L  W  F  Q  K  Y  N  M  R  L  L  W  L  H  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  T  N  F  L  V  S  S  *  N  *  N  L  R  S  S  R  A  L  N  Q  R  M  L  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  S  S  V  N  Q  *  R  H  H  L  *  L  G  P  R  S  L  D  C  L  W  R  S  I  S  P  G  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  Q  L  M  L  M  R  L  S  S  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  R  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  R  W  *  T  L  *  *  K  W  K  E  *  S  Q  T  T  S  P  Q  H  R  H  Q  K  G  F  E  R  E  V  S  L  M  V  L  T  L  E  D  K  V  R  E  V  T  Q  S  D  Q  F  S  L  H  Y  R  L  *  L  G  D  H  L  R  P  V  S  T  S  P  R  G  L  G  L  T  P  E  N  V  M  D  V  G  R  L  D  I  L  G  K  I  V  P  D  K  V  I  D  P  Q  *  L  E  V  E  V  V  M  V  E  A  V  I  L  E  T  W  W  S  W  *  W  W  S  P  K  R  P  R  *  W  A  N  W  G  H  Y  I  T  T  W  *  G  Q  R  T  D  K  R  *  G  P  L  L  R  F  P  W  A  V  *  S  G  G  I  *  C  C  H  H  R  *  S  S  G  L  *  L  H  G  F  C  I  V  *  S  W  I  H  V  F  L  C  I  F  L  I  C  *  W  S  K  F  T  L  *  I  T  *  Y  A  Y  S  C  L  Y  S  G  G  *  V  C  G  S  *  K  G  I  *  V  L  F  G  K  L  C  G  E  Q  H  L  C  R  F  G  Y  L  R  N  G  *  F  *  R  D  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  G  *  L  H  S  Q  S  G  P  H  R  L  I  S  L  C  *  E  N  D  *  *  R  V  F  S  F  L  G  K  S  Q  G  *  H  Y  P  S  T  Y  D  *  V  S  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L  Q  T  T  E  *  S  N  Y  *  E  Q  V  S  S  Y  S  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22152" stop="23180"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTAARGRGRGRGRTSSRGRGRAPSPSDTRAVTPPPTEEVIREGEDGETEQVQNEETPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPLVSEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHIECQPIEAPPMTWASFSRLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFCALSRYATQLCFSPQEQIRRFVKGLRSELRISALQIAATAKSFQEVVDFVIEVEGVKPDDFTTTPTSKRLRKGGEFNGSYTRGQGSGSYSVRPIQSSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23345" stop="24340"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPLFWRHGGRGNGGHQNGRGDGQTGATTSQHGRGNGQTNDRAHCYAFPGRSEAEASDAVITGNLLVCDCMASVLFDPGSTFSYVSSSFANGLNLHCELLDMPIRVSTPVGESVVVEKVYRSCLVNFVGSNTYVDLVILEMDDFDVTLGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTPNPVRIVSFLCARKMISKGCLAFLANLKDDTTQVPTIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDYRQLNKVTIKNKYPLTRID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22169" e_stop="23016"/>
            <exon e_start="23760" e_stop="24288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.171" e_score="0.912"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="22169" e_stop="23016" e_length="848"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.171">
            <gDNA_intron_boundary i_start="23017" i_stop="23759" i_length="743"/>
          </intron>
          <exon e_serial="2" e_score="0.909">
            <gDNA_exon_boundary e_start="23760" e_stop="24288" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22169" stop="22921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22816" stop="23016"/>
              <exon start="23760" stop="24288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCCCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAACGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCGCCAACACCTCTGGTTTCAGAAGTACAACATGCGGCTACTATGGCTCCACGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCACGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGCGCTGAATCAGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCGTTCTCTAGATTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCAGTTAATGCTTATGAGGCTAAGTTCTGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCAGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGACGTGACTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTCCCAATCCGGTCCGCATCGTCTCATTTCTTTGTGCTAGGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCAAATCTCAAGGATGACACTACCCAAGTACCTACGATTGAGTCAGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACAG</gDNA_template>
            <first_frame> P  W  *  R  S  W  E  D  V  L  *  R  K  R  T  S  T  *  P  I  *  Y  *  G  S  D  S  P  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  K  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  R  S  G  T  S  S  V  F  C  A  N  T  S  G  F  R  S  T  T  C  G  Y  Y  G  S  T  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  R  T  F  *  *  V  L  E  I  E  T  S  G  L  Q  G  R  *  I  R  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  R  V  S  T  N  R  G  T  T  Y  D  L  G  L  V  L  *  I  V  Y  G  E  V  Y  P  P  D  F  E  G  *  E  K  G  *  V  P  E  P  R  A  R  *  D  V  S  *  C  L  *  G  *  V  L  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R :   N  G  *  F  *  R  D  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  G  *  L  H  S  Q  S  G  P  H  R  L  I  S  L  C  *  E  N  D  *  *  R  V  F  S  F  L  G  K  S  Q  G  *  H  Y  P  S  T  Y  D  *  V  S  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L  Q </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  E  T  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  L  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  M  T  W  A  S  F  S  R  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  C  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  Q  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  T  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  P  N  P  V  R  I  V  S  F  L  C  A  R  K  M  I  S  K  G  C  L  A  F  L  A  N  L  K  D  D  T  T  Q  V  P  T  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y   </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  E  E  E  D  E  H  L  A  H  L  I  L  G  Q  *  L  P  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  K  M  R  K  R  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  K  V  R  H  L  Q  C  F  L  R  Q  H  L  W  F  Q  K  Y  N  M  R  L  L  W  L  H  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  T  N  F  L  V  S  S  *  N  *  N  L  R  S  S  R  A  L  N  Q  R  M  L  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  S  S  V  N  Q  *  R  H  H  L  *  L  G  P  R  S  L  D  C  L  W  R  S  I  S  P  G  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  Q  L  M  L  M  R  L  S  S  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  R  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  :  K  W  M  I  L  T  *  L  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  T  R  *  C  G  R  V  T  T  L  P  I  R  S  A  S  S  H  F  F  V  L  G  K  *  L  V  K  G  V  *  L  S  W  Q  I  S  R  M  T  L  P  K  Y  L  R  L  S  Q  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22170" stop="23016"/>
                    <exon start="23760" stop="24286"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1374</number_coding_nucleotides>
                  <number_encoded_amino_acids>458</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRAPSPSDTRAVTPPPTEEVIREGEDGETEQVQNEETPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPLVSEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHIECQPIEAPPMTWASFSRLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFCALSRYATQLCFSPQEQIRRFVKGLRSELRISALQIAATAKSFQEMDDFDVTLGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTPNPVRIVSFLCARKMISKGCLAFLANLKDDTTQVPTIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22169" e_stop="23053"/>
            <exon e_start="24168" e_stop="24731"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.895"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.895">
            <gDNA_exon_boundary e_start="22169" e_stop="23053" e_length="885"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23054" i_stop="24167" i_length="1114"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="24168" e_stop="24731" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22169" stop="22921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22181" stop="23053"/>
              <exon start="24168" stop="24731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCCCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAACGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCGCCAACACCTCTGGTTTCAGAAGTACAACATGCGGCTACTATGGCTCCACGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCACGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGCGCTGAATCAGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCGTTCTCTAGATTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCAGTTAATGCTTATGAGGCTAAGTTCTGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCAGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAA : AAGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACAGACAACTGAATAAAGTAACTATTAAGAACAAGTATCCTCTTACTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAATGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTGGTGATGTCCTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAACGAGATTTTTAAGCCATATTTGGACCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCGGTGTCCTTCTTGGGGCACGTGGTTTCTA</gDNA_template>
            <first_frame> P  W  *  R  S  W  E  D  V  L  *  R  K  R  T  S  T  *  P  I  *  Y  *  G  S  D  S  P  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  K  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  R  S  G  T  S  S  V  F  C  A  N  T  S  G  F  R  S  T  T  C  G  Y  Y  G  S  T  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  R  T  F  *  *  V  L  E  I  E  T  S  G  L  Q  G  R  *  I  R  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  R  V  S  T  N  R  G  T  T  Y  D  L  G  L  V  L  *  I  V  Y  G  E  V  Y  P  P  D  F  E  G  *  E  K  G  *  V  P  E  P  R  A  R  *  D  V  S  *  C  L  *  G  *  V  L  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R  G  G  R  L  C  D  R  S  G  R  S  E  :  K  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T  D  N  *  I  K  *  L  L  R  T  S  I  L  L  L  A  L  M  T  C  S  I  S  Y  K  V  L  V  S  S  L  R  L  T  *  D  P  V  I  I  N  *  K  Y  G  Q  W  M  C  Q  R  L  L  F  E  R  G  M  G  I  T  N  L  W  *  C  P  L  V  L  R  M  P  L  L  R  S  *  A  *  *  T  R  F  L  S  H  I  W  T  S  S  *  S  Y  L  L  M  I  Y  W  Y  T  Q  R  A  R  R  N  M  K  S  I  *  E  W  Y  W  K  C  *  G  R  K  S  F  M  P  S  S  L  S  V  S  F  G  *  M  R  C  P  S  W  G  T  W  F  L </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  E  T  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  L  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  M  T  W  A  S  F  S  R  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  C  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  Q  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K :   S  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L  Q  T  T  E  *  S  N  Y  *  E  Q  V  S  S  Y  S  H  *  *  L  V  R  S  V  T  R  C  L  C  L  L  *  D  *  L  E  I  R  L  S  S  I  E  N  T  G  N  G  C  A  K  D  C  F  S  N  E  V  W  A  L  R  I  C  G  D  V  L  W  S  Y  E  C  P  C  C  V  H  E  L  D  E  R  D  F  *  A  I  F  G  P  L  R  D  R  I  Y  *  *  Y  I  G  I  L  K  E  Q  E  G  T  *  R  A  F  E  N  G  I  G  N  V  E  G  E  K  A  L  C  Q  V  L  *  V  *  V  L  A  R  C  G  V  L  L  G  A  R  G  F   </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  E  E  E  D  E  H  L  A  H  L  I  L  G  Q  *  L  P  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  K  M  R  K  R  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  K  V  R  H  L  Q  C  F  L  R  Q  H  L  W  F  Q  K  Y  N  M  R  L  L  W  L  H  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  T  N  F  L  V  S  S  *  N  *  N  L  R  S  S  R  A  L  N  Q  R  M  L  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  S  S  V  N  Q  *  R  H  H  L  *  L  G  P  R  S  L  D  C  L  W  R  S  I  S  P  G  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  Q  L  M  L  M  R  L  S  S  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  R  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  R  W  *  T  L  *  *  K  W  K  E  *   : K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  T  R  I  D  D  L  F  D  Q  L  Q  G  A  C  V  F  S  K  I  D  L  R  S  G  Y  H  Q  L  K  I  R  A  M  D  V  P  K  T  A  F  R  T  R  Y  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  A  P  A  A  F  M  S  L  M  N  E  I  F  K  P  Y  L  D  L  F  V  I  V  F  I  D  D  I  L  V  Y  S  K  S  K  K  E  H  E  E  H  L  R  M  V  L  E  M  L  R  E  K  K  L  Y  A  K  F  S  K  C  E  F  W  L  D  A  V  S  F  L  G  H  V  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22170" stop="23053"/>
                    <exon start="24168" stop="24207"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRAPSPSDTRAVTPPPTEEVIREGEDGETEQVQNEETPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPLVSEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHIECQPIEAPPMTWASFSRLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFCALSRYATQLCFSPQEQIRRFVKGLRSELRISALQIAATAKSFQEVVDFVIEVEGVKSTTSRVIEQRLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23657" PGL_stop="22151"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23657" e_stop="22151"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="23657" e_stop="22151" e_length="1507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23657" stop="22151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCACGACCACCATGTCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCCTAGGCCCCTCGGAGAAGTGCTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTATAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGGTGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCTGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACAGAACTTAGCCTCATAAGCATTAACTGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAATCTAGAGAACGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCTGATTCAGCGCCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTAAAAAGTTCGTGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGTGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCAGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTT</gDNA_template>
            <first_frame> H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  R  C  P  Y  H  V  V  M  *  W  P  Q  F  A  H  H  L  G  R  F  G  D  H  H  Y  H  D  H  H  V  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  S  N  L  P  T  S  I  T  F  S  G  V  N  P  R  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  C  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  L  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  E  L  S  L  I  S  I  N  *  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  S  R  E  R  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  I  S  I  L  *  F  S  A  L  E  D  R  R  F  Q  F  Q  E  L  T  K  K  F  V  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  W  S  H  S  S  R  M  L  Y  F  *  N  Q  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  R  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  G  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  S  R  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S  </first_frame>
            <second_frame>  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  C  L  S  V  A  P  T  M  L  *  C  S  G  P  S  L  P  I  T  S  A  V  L  V  T  T  I  T  T  T  T  M  S  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  I  L  G  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  Y  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  S  L  F  D  V  G  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  C  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  Q  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  R  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  N  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  E  T  R  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  V  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L </second_frame>
            <third_frame>   R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  C  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  Q  S  *  A  P  R  R  S  A  D  R  S  E  V  V  P  Q  L  Q  S  I  V  K  T  E  L  V  G  L  S  N  F  P  N  L  V  L  *  C  K  N  H  *  T  H  L  P  F  E  A  F  L  M  S  V  L  W  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  R  T  *  P  H  K  H  *  L  T  S  Y  L  A  L  G  S  G  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  I  *  R  T  R  P  K  S  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  H  K  H  P  L  I  Q  R  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  R  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  C  V  E  P  *  *  P  H  V  V  L  L  K  P  E  V  L  A  Q  K  T  L  E  V  P  D  L  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  G  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  P  L  P  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23423" stop="23175"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPQFAHHLGRFGDHHYHDHHVSRITASTMTTSTSSYWGSITLSGTIFPNMSNLPTSITFSGVNPRPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22373" stop="22152"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWRFLILHLFSFPILPFSYYFLSRWGSHCPSIRWARCSSSSSRGRPPTTSTTAPCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22348" stop="22151"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGVSSFCTCSVSPSSPSLITSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAAVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23119" stop="22925"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRSLFDVGVVVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRICS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="24860" PGL_stop="24048"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24860" e_stop="24048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="24860" e_stop="24048" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24860" stop="24048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACGAATCGACGGTAGTAACTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCATTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGTAAGAGGATACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTG</gDNA_template>
            <first_frame> R  I  P  *  R  I  D  G  S  N  *  L  T  Q  Q  S  S  L  F  L  T  H  *  W  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  P  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  *  E  D  T  C  S  *  *  L  L  Y  S  V  V  C  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L </first_frame>
            <second_frame>  E  S  L  D  E  S  T  V  V  T  S  *  P  N  K  A  P  Y  F  *  H  I  S  G  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  L  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  H  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  H  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  S  K  R  I  L  V  L  N  S  Y  F  I  Q  L  S  V  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I   </second_frame>
            <third_frame>   N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  S  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  I  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  V  R  G  Y  L  F  L  I  V  T  L  F  S  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24595" stop="24356"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNLVHQAHERSRGIRKTKGHHHKFVMPIPRSKSSLWHIHCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24663" stop="24466"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKISFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="26125" PGL_stop="25633"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26125" e_stop="25633"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="26125" e_stop="25633" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26125" stop="25633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCAATTCCGCATGCAATGTTTTCCAAAATTTAGAAGTAAACTTCGTACCTCTATCTGATATGATGGATAGTGGAACACCATGCAATCGCACCACTTCCGAGATGTAAAGTTTGGCTAACTTTTCTACATTGTAAGTCACCTTGACTGGAATGAAATGAGCAGATTTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACAAAATCCATTGCAATTCTTTCCCACTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTTTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATGTCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGATACATCTTGGTTGCGCCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCGGAATAGTGTTGATCAAATCATCGACGCGGGGT</gDNA_template>
            <first_frame> T  Q  F  R  M  Q  C  F  P  K  F  R  S  K  L  R  T  S  I  *  Y  D  G  *  W  N  T  M  Q  S  H  H  F  R  D  V  K  F  G  *  L  F  Y  I  V  S  H  L  D  W  N  E  M  S  R  F  S  *  P  I  N  N  H  P  N  G  V  I  L  T  H  C  L  W  K  T  N  H  K  I  H  C  N  S  F  P  L  P  F  R  N  G  H  S  L  K  C  S  S  G  P  L  V  F  I  L  Y  L  L  T  V  W  T  F  G  N  K  I  H  N  V  T  L  H  S  T  P  P  K  V  L  L  *  V  T  I  H  L  G  C  A  R  M  Y  R  I  P  *  T  M  S  L  C  R  N  S  V  D  Q  I  I  D  A  G  </first_frame>
            <second_frame>  P  N  S  A  C  N  V  F  Q  N  L  E  V  N  F  V  P  L  S  D  M  M  D  S  G  T  P  C  N  R  T  T  S  E  M  *  S  L  A  N  F  S  T  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  M  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  F  S  Y  F  T  C  *  Q  F  G  H  L  A  I  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  G  I  V  L  I  K  S  S  T  R  G </second_frame>
            <third_frame>   P  I  P  H  A  M  F  S  K  I  *  K  *  T  S  Y  L  Y  L  I  *  W  I  V  E  H  H  A  I  A  P  L  P  R  C  K  V  W  L  T  F  L  H  C  K  S  P  *  L  E  *  N  E  Q  I  *  L  T  Y  Q  Q  S  P  K  W  S  H  T  Y  P  L  S  L  E  D  Q  P  Q  N  P  L  Q  F  F  P  T  S  I  P  E  W  A  F  S  E  V  F  L  R  A  F  G  F  H  T  L  L  V  D  S  L  D  I  W  Q  *  N  P  Q  C  H  A  S  F  Y  S  T  K  S  V  A  L  G  H  D  T  S  W  L  R  P  D  V  *  N  T  L  N  Y  E  P  L  S  E  *  C  *  S  N  H  R  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25951" stop="25727"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNHPNGVILTHCLWKTNHKIHCNSFPLPFRNGHSLKCSSGPLVFILYLLTVWTFGNKIHNVTLHSTPPKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="26340" PGL_stop="26164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26340" e_stop="26164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="26340" e_stop="26164" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26340" stop="26164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATTAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCTGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATTGTCCTTTCAGACTGGCCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  L  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  W  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  Y  *  C  L  S  D  S  Y  Y  C  M  K  T  L  L  R  V  R  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  P  P  T  L  E  L  S  F  Q  T  G  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  I  N  A  *  V  I  A  I  I  V  *  K  L  C  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  R  T  K  H  I  L  Q  H  L  N  C  P  F  R  L  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0034P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="33073" PGL_stop="34943"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33073" e_stop="33424"/>
            <exon e_start="34568" e_stop="34943"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="33073" e_stop="33424" e_length="352"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34568" e_stop="34943" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33073" stop="33424"/>
              <exon start="34568" stop="34943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33093" stop="33424"/>
              <exon start="34568" stop="34899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575186" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCAGATAAAAAGGAACAAGAACGCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAG : GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTGAAAATTTGTGCTTTCATGAAATGAATGCAATATTCTGGCTTGTTTCT</gDNA_template>
            <first_frame> I  Q  I  K  R  N  K  N  A  P  F  F  Q  F  R  V  S  S  F  S  N  R  S  L  R  E  A  I  Q  S  N  N  H  A  E  E  Q  G  *  G  R  *  E  Q  E  E  R  K  E  *  S  R  *  *  E  K  R  A  C  F  Q  R  R  W  T  G  I  C  S  G  P  S  Y  A  W  *  W  T  M  *  S  Y  V  Y  *  W  N  *  A  S  L  S  H  T  W  *  D  A  *  E  S  M  D  R  C  W  *  Y  H  P  C  W  P  T  *  L  S   : G  *  Q  S  *  C  D  L  E  V  H  A  *  *  G  Q  V  I  E  G  I  W  R  V  T  R  E  H  K  T  *  *  G  H  C  *  W  S  *  *  R  G  *  G  C  W  *  *  L  H  *  V  *  G  *  R  H  *  *  N  L  I  *  T  Q  N  C  C  Y  *  G  L  S  Y  A  L  L  I  F  L  W  R  S  F  S  L  N  I  E  K  V  F  L  C  I  V  *  S  C  M  I  E  F  C  A  S  K  F  C  L  K  I  C  A  F  M  K  *  M  Q  Y  S  G  L  F   </first_frame>
            <second_frame>  F  R  *  K  G  T  R  T  P  P  F  S  N  L  G  F  L  P  S  P  I  E  V  *  E  K  R  F  N  R  T  T  M  P  K  N  K  G  K  G  G  K  N  R  K  R  G  K  N  E  A  D  D  E  K  R  E  L  V  F  K  E  D  G  Q  E  Y  A  Q  V  L  R  M  L  G  N  G  R  C  E  A  M  C  I  D  G  T  K  R  L  C  H  I  R  G  K  M  H  K  K  V  W  I  A  A  G  D  I  I  L  V  G  L  R  D  Y  Q  :  D  D  K  A  D  V  I  L  K  Y  M  P  D  E  A  R  L  L  K  A  Y  G  E  L  P  E  N  T  R  L  N  E  G  I  A  N  G  L  D  E  E  D  E  G  A  G  D  D  Y  I  E  F  E  D  E  D  I  D  K  I  *  S  K  L  K  I  V  V  T  E  V  Y  H  M  P  C  *  Y  F  C  G  V  L  F  P  *  T  L  K  K  Y  F  C  V  S  F  E  V  V  *  L  S  F  V  H  Q  S  S  V  *  K  F  V  L  S  *  N  E  C  N  I  L  A  C  F  </second_frame>
            <third_frame>   S  D  K  K  E  Q  E  R  P  L  F  P  I  *  G  F  F  L  L  Q  S  K  F  E  R  S  D  S  I  E  Q  P  C  R  R  T  R  V  R  E  V  R  T  G  R  E  E  R  M  K  P  M  M  R  K  E  S  L  F  S  K  K  M  D  R  N  M  L  R  S  F  V  C  L  V  M  D  D  V  K  L  C  V  L  M  E  L  S  V  F  V  T  Y  V  V  R  C  I  R  K  Y  G  S  L  L  V  I  S  S  L  L  A  Y  V  T  I  R :   M  T  K  L  M  *  S  *  S  T  C  L  M  R  P  G  Y  *  R  H  M  E  S  Y  Q  R  T  Q  D  L  M  R  A  L  L  M  V  L  M  K  R  M  R  V  L  V  M  I  T  L  S  L  R  M  K  T  L  I  K  S  N  L  N  S  K  L  L  L  L  R  S  I  I  C  L  A  N  I  S  V  A  F  F  F  L  K  H  *  K  S  I  F  V  Y  R  L  K  L  Y  D  *  V  L  C  I  K  V  L  S  E  N  L  C  F  H  E  M  N  A  I  F  W  L  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33146" stop="33424"/>
                    <exon start="34568" stop="34750"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKRFNRTTMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIANGLDEEDEGAGDDYIEFEDEDIDKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="40523" PGL_stop="36317"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40523" e_stop="40312"/>
            <exon e_start="38218" e_stop="38009"/>
            <exon e_start="37918" e_stop="37761"/>
            <exon e_start="37014" e_stop="36744"/>
            <exon e_start="36665" e_stop="36317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.972" e_score="0.995"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.985" e_score="0.987"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="40523" e_stop="40312" e_length="212"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.972">
            <gDNA_intron_boundary i_start="40311" i_stop="38219" i_length="2093"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38218" e_stop="38009" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38008" i_stop="37919" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="37918" e_stop="37761" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.985">
            <gDNA_intron_boundary i_start="37760" i_stop="37015" i_length="746"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="37014" e_stop="36744" e_length="271"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36743" i_stop="36666" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36665" e_stop="36317" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40523" stop="40312"/>
              <exon start="38218" stop="38009"/>
              <exon start="37918" stop="37761"/>
              <exon start="37014" stop="36744"/>
              <exon start="36665" stop="36317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567412" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTTAGTTATTATTATTATAACAACAACTTGTAATAATTTGGTGGAAAGCAAATGTGCATTTGAAGCAATTTTTAATTTTGGAGATTCAAATAGTGATACTGGTGGATTTAATGCTGCATTTCCATCTCAAGGGCCTCCTTATGGAATGACTTATTTTAAAAGACCAACTGGAAGGGCAAGTGATGGAAGAGTCATTGTGGATTTTCTTG : CTCAAGGATTAGGTTTGCCATATTTGAGTCCATATTTGCAATCAATTGGATCTGATTTCAGACATGGTGCCAACTTTGCAACATCAGCATCCACAGTGCTCATGCCACAAACATCATTATTTGTGTCAGGTGTTAGCCCTTTTTATCTAGGAATTCAACTCCAACAGTTCAAGCTATTTAAGACTAAAATTGATGAATTTCAGAGTAAAG : GTAACACTAATCTGCCTCCCTCAGACATATTTGGGAAATCTCTTTACACATTCTATATAGGTCAGAATGACTTCACTGGTGAGTTGGGAAGTAAAGGAATAGGTGGAGTGAAGGAGTACTTACCTCAAGTAGTTTCCCAAATTGCTAGCACTATCAAG : GAAATCTATGGATTAGGGGGAAGAACATTTTTGGTACTTAACCTTGCACCAATTGGATGTTACCCAGCATTTTTGGTAAAGCTCCCTCATGAAAGTTCTGATATTGATGAGTATGGATGCTTGATATCATACAACAATGCAGTTGTGGACTATAACAATATGCTTAAAGATGCATTGGCACAAACAAGAAAAGATCTTTCAGATGCAAATGTTATTTATGTGGACACTCATGCTGTCCTCTTGGAACTTTTCCAACACCCCACTTCACATG : GGTTAAAATATGGAAACAAAGCATGTTGTGGACAAGGAGGTGGTTCTTACAACTTTAACCAAGAAGTATACTGTGGAAATACCAAAGAGATAAATGGACAAACATTGTCAGCTACAGCATGTGAGGATCCATACAATTATGTGAGCTGGGATGGGATACATGCCACTGAAGCAGCAAACAAAATCACAGCAAATGTCATTCTCAATGAGGCTTCTATTTTTGATCCTCCATTTTCACTACATAAATTCTGTGATATTCAGACTGTAGGTTGATACATGATCCACAAGATGTTATAACTAGAAGAAACGAATAAATAGTGGTCATGTGTTTAATTAAAATTGACATTGAT</gDNA_template>
            <first_frame> Y  F  S  Y  Y  Y  Y  N  N  N  L  *  *  F  G  G  K  Q  M  C  I  *  S  N  F  *  F  W  R  F  K  *  *  Y  W  W  I  *  C  C  I  S  I  S  R  A  S  L  W  N  D  L  F  *  K  T  N  W  K  G  K  *  W  K  S  H  C  G  F  S  C :   S  R  I  R  F  A  I  F  E  S  I  F  A  I  N  W  I  *  F  Q  T  W  C  Q  L  C  N  I  S  I  H  S  A  H  A  T  N  I  I  I  C  V  R  C  *  P  F  L  S  R  N  S  T  P  T  V  Q  A  I  *  D  *  N  *  *  I  S  E  *  R :   *  H  *  S  A  S  L  R  H  I  W  E  I  S  L  H  I  L  Y  R  S  E  *  L  H  W  *  V  G  K  *  R  N  R  W  S  E  G  V  L  T  S  S  S  F  P  N  C  *  H  Y  Q   : G  N  L  W  I  R  G  K  N  I  F  G  T  *  P  C  T  N  W  M  L  P  S  I  F  G  K  A  P  S  *  K  F  *  Y  *  *  V  W  M  L  D  I  I  Q  Q  C  S  C  G  L  *  Q  Y  A  *  R  C  I  G  T  N  K  K  R  S  F  R  C  K  C  Y  L  C  G  H  S  C  C  P  L  G  T  F  P  T  P  H  F  T  W :   V  K  I  W  K  Q  S  M  L  W  T  R  R  W  F  L  Q  L  *  P  R  S  I  L  W  K  Y  Q  R  D  K  W  T  N  I  V  S  Y  S  M  *  G  S  I  Q  L  C  E  L  G  W  D  T  C  H  *  S  S  K  Q  N  H  S  K  C  H  S  Q  *  G  F  Y  F  *  S  S  I  F  T  T  *  I  L  *  Y  S  D  C  R  L  I  H  D  P  Q  D  V  I  T  R  R  N  E  *  I  V  V  M  C  L  I  K  I  D  I  D </first_frame>
            <second_frame>  I  L  V  I  I  I  I  T  T  T  C  N  N  L  V  E  S  K  C  A  F  E  A  I  F  N  F  G  D  S  N  S  D  T  G  G  F  N  A  A  F  P  S  Q  G  P  P  Y  G  M  T  Y  F  K  R  P  T  G  R  A  S  D  G  R  V  I  V  D  F  L   : A  Q  G  L  G  L  P  Y  L  S  P  Y  L  Q  S  I  G  S  D  F  R  H  G  A  N  F  A  T  S  A  S  T  V  L  M  P  Q  T  S  L  F  V  S  G  V  S  P  F  Y  L  G  I  Q  L  Q  Q  F  K  L  F  K  T  K  I  D  E  F  Q  S  K   : G  N  T  N  L  P  P  S  D  I  F  G  K  S  L  Y  T  F  Y  I  G  Q  N  D  F  T  G  E  L  G  S  K  G  I  G  G  V  K  E  Y  L  P  Q  V  V  S  Q  I  A  S  T  I  K  :  E  I  Y  G  L  G  G  R  T  F  L  V  L  N  L  A  P  I  G  C  Y  P  A  F  L  V  K  L  P  H  E  S  S  D  I  D  E  Y  G  C  L  I  S  Y  N  N  A  V  V  D  Y  N  N  M  L  K  D  A  L  A  Q  T  R  K  D  L  S  D  A  N  V  I  Y  V  D  T  H  A  V  L  L  E  L  F  Q  H  P  T  S  H   : G  L  K  Y  G  N  K  A  C  C  G  Q  G  G  G  S  Y  N  F  N  Q  E  V  Y  C  G  N  T  K  E  I  N  G  Q  T  L  S  A  T  A  C  E  D  P  Y  N  Y  V  S  W  D  G  I  H  A  T  E  A  A  N  K  I  T  A  N  V  I  L  N  E  A  S  I  F  D  P  P  F  S  L  H  K  F  C  D  I  Q  T  V  G  *  Y  M  I  H  K  M  L  *  L  E  E  T  N  K  *  W  S  C  V  *  L  K  L  T  L   </second_frame>
            <third_frame>   F  *  L  L  L  L  *  Q  Q  L  V  I  I  W  W  K  A  N  V  H  L  K  Q  F  L  I  L  E  I  Q  I  V  I  L  V  D  L  M  L  H  F  H  L  K  G  L  L  M  E  *  L  I  L  K  D  Q  L  E  G  Q  V  M  E  E  S  L  W  I  F  L  :  L  K  D  *  V  C  H  I  *  V  H  I  C  N  Q  L  D  L  I  S  D  M  V  P  T  L  Q  H  Q  H  P  Q  C  S  C  H  K  H  H  Y  L  C  Q  V  L  A  L  F  I  *  E  F  N  S  N  S  S  S  Y  L  R  L  K  L  M  N  F  R  V  K  :  V  T  L  I  C  L  P  Q  T  Y  L  G  N  L  F  T  H  S  I  *  V  R  M  T  S  L  V  S  W  E  V  K  E  *  V  E  *  R  S  T  Y  L  K  *  F  P  K  L  L  A  L  S  R :   K  S  M  D  *  G  E  E  H  F  W  Y  L  T  L  H  Q  L  D  V  T  Q  H  F  W  *  S  S  L  M  K  V  L  I  L  M  S  M  D  A  *  Y  H  T  T  M  Q  L  W  T  I  T  I  C  L  K  M  H  W  H  K  Q  E  K  I  F  Q  M  Q  M  L  F  M  W  T  L  M  L  S  S  W  N  F  S  N  T  P  L  H  M  :  G  *  N  M  E  T  K  H  V  V  D  K  E  V  V  L  T  T  L  T  K  K  Y  T  V  E  I  P  K  R  *  M  D  K  H  C  Q  L  Q  H  V  R  I  H  T  I  M  *  A  G  M  G  Y  M  P  L  K  Q  Q  T  K  S  Q  Q  M  S  F  S  M  R  L  L  F  L  I  L  H  F  H  Y  I  N  S  V  I  F  R  L  *  V  D  T  *  S  T  R  C  Y  N  *  K  K  R  I  N  S  G  H  V  F  N  *  N  *  H  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40522" stop="40312"/>
                    <exon start="38218" stop="38009"/>
                    <exon start="37918" stop="37761"/>
                    <exon start="37014" stop="36744"/>
                    <exon start="36665" stop="36394"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILVIIIITTTCNNLVESKCAFEAIFNFGDSNSDTGGFNAAFPSQGPPYGMTYFKRPTGRASDGRVIVDFLAQGLGLPYLSPYLQSIGSDFRHGANFATSASTVLMPQTSLFVSGVSPFYLGIQLQQFKLFKTKIDEFQSKGNTNLPPSDIFGKSLYTFYIGQNDFTGELGSKGIGGVKEYLPQVVSQIASTIKEIYGLGGRTFLVLNLAPIGCYPAFLVKLPHESSDIDEYGCLISYNNAVVDYNNMLKDALAQTRKDLSDANVIYVDTHAVLLELFQHPTSHGLKYGNKACCGQGGGSYNFNQEVYCGNTKEINGQTLSATACEDPYNYVSWDGIHATEAANKITANVILNEASIFDPPFSLHKFCDIQTVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="64251" PGL_stop="67886"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64251" e_stop="64337"/>
            <exon e_start="64433" e_stop="64524"/>
            <exon e_start="65585" e_stop="65712"/>
            <exon e_start="66844" e_stop="66948"/>
            <exon e_start="67426" e_stop="67886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64251" e_stop="64337" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64433" e_stop="64524" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65585" e_stop="65712" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66844" e_stop="66948" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.975">
            <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67426" e_stop="67886" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64251" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64466" stop="64524"/>
              <exon start="65585" stop="65667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592420" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG : ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG : GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG : GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG : GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</gDNA_template>
            <first_frame> E  K  K  K  *  Y  I  P  Q  P  N  F  I  Y  *  F  R  V  K  S  Q  Q  L  F  R  F  S  D  Q  :  I  Q  I  C  L  D  F  D  G  F  E  T  N  I  E  G  A  E  G  S  P  E  G  S  S  Y  F  M  Q  R  W :   P  C  W  R  G  H  V  S  L  A  G  Y  N  N  G  A  L  *  *  P  L  C  W  G  C  F  F  G  H  D  P  F  S  S  G  L  S  I  Q  A  S  *   : G  C  F  *  D  K  S  F  P  S  K  Y  Q  *  Q  W  E  Y  M  L  G  H  T  E  G  A  V  E  P  C  I  N  Y  F  Q   : G  F  A  F  N  L  L  T  F  D  G  P  K  P  *  R  P  L  G  S  *  D  C  S  H  V  Q  D  *  Q  V  Q  I  R  R  N  R  Q  E  L  D  P  E  V  C  H  G  L  K  N  L  T  L  *  W  L  E  L  I  *  T  K  T  N  F  K  C  F  I  F  S  I  L  H  *  Q  C  V  E  *  H  *  A  L  L  L  Y  R  K  N  D  N  A  L  N  L  F  M  Y  E  Y  *  Y  L  N  F  E  H  V  W  E  A  Y  V  S  A  F  *  L  F  L  L  V  *  R  S  I  C  V  I  N  S  I  L  Q  K  P  F  V  N  S  T  V  F  I  N  T  D  N  Y  S  S  T  W </first_frame>
            <second_frame>  K  K  K  S  D  I  F  L  N  P  I  S  S  T  S  F  A  *  R  V  S  S  F  S  D  F  L  I  R :   F  R  F  V  W  I  L  M  A  S  K  R  I  L  K  E  L  K  D  L  Q  K  D  P  P  T  S  C  S  A   : G  P  V  G  E  D  M  F  H  W  Q  A  T  I  M  G  P  S  D  S  P  Y  A  G  G  V  F  L  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  K  S  K  Y  E  G  T  A  R  S  W  T  Q  K  Y  A  M  G  *  K  I  *  P  Y  D  G  L  N  *  Y  K  Q  K  Q  I  S  N  V  L  S  S  L  F  S  I  N  N  V  *  N  S  I  R  R  C  F  S  T  G  R  T  I  M  L  *  I  C  L  C  M  N  T  N  I  *  T  L  N  M  C  G  K  R  M  Y  L  L  F  D  C  F  C  W  F  D  D  Q  F  V  *  L  I  P  Y  F  K  S  L  L  *  I  L  P  C  L  L  I  R  I  T  I  V  Q  P   </second_frame>
            <third_frame>   K  K  K  V  I  Y  S  S  T  Q  F  H  L  L  V  S  R  K  E  S  A  A  F  P  I  F  *  S   : D  S  D  L  F  G  F  *  W  L  R  N  E  Y  *  R  S  *  R  I  S  R  R  I  L  L  L  H  A  A  L  :  A  L  L  E  R  T  C  F  T  G  R  L  Q  *  W  G  P  L  I  A  L  M  L  G  V  F  F  W  S  R  S  I  F  L  R  I  I  H  S  S  L  L  R :   L  L  L  G  Q  K  F  S  I  Q  I  S  I  A  M  G  V  Y  A  W  T  Y  *  R  S  S  G  A  L  H  *  L  F  P  R :   F  C  F  Q  F  A  H  F  *  R  T  Q  T  L  T  T  P  W  F  L  R  L  L  T  C  T  R  L  T  S  P  N  T  K  E  P  P  G  V  G  P  R  S  M  P  W  V  K  K  F  N  P  M  M  A  *  T  D  I  N  K  N  K  F  Q  M  F  Y  L  L  Y  S  P  L  T  M  C  R  I  A  L  G  V  A  S  L  Q  E  E  R  *  C  F  E  F  V  Y  V  *  I  L  I  F  E  L  *  T  C  V  G  S  V  C  I  C  F  L  T  V  S  V  G  L  T  I  N  L  C  N  *  F  H  T  S  K  A  F  C  K  F  Y  R  V  Y  *  Y  G  *  L  *  F  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64306" stop="64337"/>
                    <exon start="64433" stop="64524"/>
                    <exon start="65585" stop="65712"/>
                    <exon start="66844" stop="66948"/>
                    <exon start="67426" stop="67569"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVSSFSDFLIRFRFVWILMASKRILKELKDLQKDPPTSCSAGPVGEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKSKYEGTARSWTQKYAMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="88669" PGL_stop="89308"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88669" e_stop="89308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="88669" e_stop="89308" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88669" stop="89308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586115" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATATACCCGCAACCACCACCCACACTCACAGCCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCTGCCCCCGAATTACCATCGCCCGTGCCACCCCCCAATACTCATCCCATCTTAACCCGTGGCAAAGCCGATATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTATTGCCTCAAAAAATGCTTATTGACGTCATTTTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCGTTCACCTGGTACTGTCACTCGTCGTGCGCAACAATTGACTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCG</gDNA_template>
            <first_frame> S  P  T  I  Y  P  Q  P  P  P  T  L  T  A  N  P  N  H  P  I  P  T  T  S  P  A  R  S  V  L  G  P  S  R  L  P  P  N  Y  H  R  P  C  H  P  P  I  L  I  P  S  *  P  V  A  K  P  I  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  D  V  I  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  T  W  Y  C  H  S  S  C  A  T  I  D  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  G  C  P  R  I  T  I  A  R  A  T  P  Q  Y  S  S  H  L  N  P  W  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  Y  C  L  K  K  C  L  L  T  S  F  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  R  S  P  G  T  V  T  R  R  A  Q  Q  L  T  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P </second_frame>
            <third_frame>   T  H  N  I  P  A  T  T  T  H  T  H  S  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  A  A  P  E  L  P  S  P  V  P  P  P  N  T  H  P  I  L  T  R  G  K  A  D  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  I  A  S  K  N  A  Y  *  R  H  F  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  V  H  L  V  L  S  L  V  V  R  N  N  *  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88978" stop="89280"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIRKLGFLYLSPMGGTQWAVNGCTKLNTMQMAVFPGTRLVWLLKATIRSMGLITPRHSVLLFGRKPFTWYCHSSCATIDSSISWMFPMLFFMACLMKLST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88671" stop="88943"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNIPATTTHTHSQPEPPHTHNISSPIRFGSFPAAPELPSPVPPPNTHPILTRGKADIFKPKTFQATILPNTPLPDSEPTTYSIASKNAY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88944" stop="89213"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHFMDDEFKALTDQKTWVLVPKPHGRHPVGCKWVYKIKHNADGSISRYKARLVAKGYNQEYGLDYSETFSPVIRQETVHLVLSLVVRNN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="103193" PGL_stop="101438"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103193" e_stop="101438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="103193" e_stop="101438" e_length="1756"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103193" stop="101438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATTTCTTTAACAGGTTAATTCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTTTAAATTTTTTCCGCTTCATCTTGTTTCTGCTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAAAATAACAATCTTAAGAAATTTTAGCAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTCATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTATTTTTTACTGTTAGTATTTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTACACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGTTGTTCTTCTATATCACTACGTTGGGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATAAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTTCAAGATGATCTGTACAATGTGTACAGCAATGCCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAATAAATTCATTGTGGCAAAATTTCTAGACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGATTGATCGTGGATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGTAAGGAAATGACTGTTGAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTAGATTAAATTTTATTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCAACCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGATAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATCAAGCAAACTCGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACAGCAGGGAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTCATATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAGAATGATATGTATGTAGGAAAAGGTTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTAATATGAATAAAGATTTTGCATCTTCTT</gDNA_template>
            <first_frame> L  F  L  *  Q  V  N  S  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  I  L  V  F  *  I  F  S  A  S  S  C  F  C  F  C  S  L  T  S  *  I  Q  V  I  V  K  I  T  I  L  R  N  F  S  S  F  C  I  *  G  F  W  R  L  K  P  S  W  F  S  T  L  L  E  F  L  K  F  I  R  L  T  I  K  R  T  *  K  L  Y  R  *  I  R  N  S  L  C  K  D  L  F  F  T  V  S  I  F  K  Y  L  I  Y  L  P  F  V  T  E  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  T  H  N  R  S  N  A  A  L  A  P  A  E  K  P  A  K  F  S  G  V  D  F  K  R  W  Q  Q  K  L  F  F  Y  I  T  T  L  G  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  K  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  N  K  F  I  V  A  K  F  L  D  Y  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E  G  L  I  V  D  D  A  F  Q  V  A  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  H  K  R  K  E  M  T  V  E  D  L  I  V  R  L  R  I  E  E  D  N  K  A  A  E  K  R  S  R  G  N  S  A  I  S  R  L  N  F  I  E  E  D  S  T  K  L  K  K  R  K  K  T  S  G  P  K  S  N  Q  P  K  K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  D  N  E  C  R  G  P  K  K  D  K  K  K  K  D  Q  A  N  S  A  E  S  K  G  E  M  D  D  L  C  A  M  L  S  E  C  N  L  V  G  N  P  R  E  W  W  I  D  S  G  A  S  C  H  V  C  A  N  K  E  L  F  S  S  Y  T  P  A  L  T  D  E  K  L  F  M  A  N  S  A  V  A  K  V  E  G  T  G  K  V  L  L  K  M  T  A  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  I  L  T  K  N  G  F  I  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  L  S  D  D  L  F  K  L  N  V  I  A  V  N  M  N  K  D  F  A  S  S  </first_frame>
            <second_frame>  Y  F  F  N  R  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  L  Y  F  K  F  F  P  L  H  L  V  S  A  S  V  H  *  L  H  K  Y  K  L  L  *  K  *  Q  S  *  E  I  L  A  V  F  V  F  E  V  S  G  D  *  N  L  H  G  F  L  L  C  L  N  F  *  N  S  F  D  *  R  L  K  E  H  K  N  F  I  V  K  S  E  T  V  C  V  K  I  Y  F  L  L  L  V  F  L  N  T  *  F  I  C  H  L  *  Q  K  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  S  C  S  S  I  S  L  R  W  V  C  R  S  S  S  M  R  M  F  L  L  C  Q  I  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  F  K  M  I  C  T  M  C  T  A  M  P  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  I  N  S  L  W  Q  N  F  *  T  I  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  S  M  I  S  L  L  K  D  *  S  W  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  V  R  K  *  L  L  K  I  S  *  *  G  *  E  S  K  R  I  I  R  L  Q  K  R  G  H  V  V  I  Q  Q  Y  L  D  *  I  L  L  K  K  I  P  Q  N  *  R  K  E  R  K  H  L  V  Q  K  A  I  N  L  R  R  N  S  M  E  T  A  L  I  V  V  N  M  V  I  G  I  M  N  V  G  V  L  R  R  T  R  K  R  K  I  K  Q  T  R  L  N  P  K  E  K  W  M  I  S  V  Q  C  F  Q  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  V  P  H  A  M  F  V  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  K  N  C  L  W  Q  T  P  L  L  Q  R  W  K  E  L  A  K  S  Y  *  R  *  Q  Q  G  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  F  *  P  R  M  D  S  Y  V  Y  L  F  L  I  K  *  *  *  A  R  M  I  C  M  *  E  K  V  T  L  V  M  T  F  S  N  S  M  *  L  Q  L  I  *  I  K  I  L  H  L  L </second_frame>
            <third_frame>   I  S  L  T  G  *  F  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  C  I  L  N  F  F  R  F  I  L  F  L  L  L  F  I  N  F  I  N  T  S  Y  C  K  N  N  N  L  K  K  F  *  Q  F  L  Y  L  R  F  L  E  I  K  T  F  M  V  F  Y  S  A  *  I  F  K  I  H  S  I  N  D  *  K  N  I  K  T  L  S  L  N  Q  K  Q  F  V  *  R  F  I  F  Y  C  *  Y  F  *  I  L  N  L  S  A  I  C  D  R  K  N  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  Y  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  A  A  K  V  V  L  L  Y  H  Y  V  G  S  A  E  V  H  Q  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  S  R  *  S  V  Q  C  V  Q  Q  C  Q  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  *  I  H  C  G  K  I  S  R  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  P  *  S  P  C  *  R  I  D  R  G  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  T  Q  T  *  G  N  D  C  *  R  S  H  S  K  V  E  N  R  R  G  *  *  G  C  R  K  E  V  T  W  *  F  S  N  I  *  I  K  F  Y  *  R  R  F  H  K  I  K  E  K  K  E  N  I  W  S  K  K  Q  S  T  *  E  E  I  Q  W  K  L  L  *  L  W  *  T  W  S  *  G  *  *  M  S  G  S  *  E  G  Q  E  K  E  R  S  S  K  L  G  *  I  Q  R  R  N  G  *  S  L  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  V  D  R  F  W  C  L  M  P  C  L  C  Q  Q  R  I  I  F  I  I  Y  S  S  T  Y  R  *  K  I  V  Y  G  K  L  R  C  C  K  G  G  R  N  W  Q  S  P  I  K  D  D  S  R  E  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  N  S  D  Q  E  W  I  H  M  C  I  C  F  *  *  S  S  S  K  Q  E  *  Y  V  C  R  K  R  L  P  *  *  *  P  F  Q  T  Q  C  N  C  S  *  Y  E  *  R  F  C  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102857" stop="101439"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1419</number_coding_nucleotides>
                  <number_encoded_amino_acids>473</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRNSLCKDLFFTVSIFKYLIYLPFVTEKMTNSSQTNAGTVSAATTTVTHNRSNAALAPAEKPAKFSGVDFKRWQQKLFFYITTLGLQKFINENVPVMSDKTPADERFLVTEAWTHSDFLCKNYILSGLQDDLYNVYSNAKTSKELWDALEKKYKTEDAGMNKFIVAKFLDYKMIDSKTVVTQVQELQVIIHDLLAEGLIVDDAFQVAAIIEKLPPLWKDFKNYLKHKRKEMTVEDLIVRLRIEEDNKAAEKRSRGNSAISRLNFIEEDSTKLKKRKKTSGPKSNQPKKKFNGNCFNCGKHGHRDNECRGPKKDKKKKDQANSAESKGEMDDLCAMLSECNLVGNPREWWIDSGASCHVCANKELFSSYTPALTDEKLFMANSAVAKVEGTGKVLLKMTAGKVVTLNRVSYVPELRKNLVSIPILTKNGFICVFVSDKVVVSKNDMYVGKGYLSDDLFKLNVIAVNMNKDFASS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="114482" PGL_stop="114051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114482" e_stop="114051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="114482" e_stop="114051" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114482" stop="114051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599605" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATGTACTCTGATGGAATTCAGAGTAGTACCAGGTACCTCATCACACTTTTCCACTTTATCAGCCTCTTCAGGTAGACTATGATTTTGATCATCAAGGTCATTTTTCAATTGTTGATCTGCATCAGCTTCACTTCTTTCAATTTTCTGTGAATTGAACAGCTTGATCACATCATCTTCATCATTTGATCCATTATTTTTCAAGCTTCCATCTTCATCAAATACAACATGAATGCTTTCTTCAGTGCATTTGAGTTCGTTTGTTGAATATTCTGTAAGCCTTACTCGATGAAGAATATCCAACAAATACTCCTTCATCACTCCTAGGATCAAATTTTCCCAGATCATCCTTTCCATTGTTCAGCACAAAACATCTGCATCCAAATGCTCTAAGATAGCTCCGCATAGGCTTTCTGTTGTTGAGCAACTCA</gDNA_template>
            <first_frame> F  D  V  L  *  W  N  S  E  *  Y  Q  V  P  H  H  T  F  P  L  Y  Q  P  L  Q  V  D  Y  D  F  D  H  Q  G  H  F  S  I  V  D  L  H  Q  L  H  F  F  Q  F  S  V  N  *  T  A  *  S  H  H  L  H  H  L  I  H  Y  F  S  S  F  H  L  H  Q  I  Q  H  E  C  F  L  Q  C  I  *  V  R  L  L  N  I  L  *  A  L  L  D  E  E  Y  P  T  N  T  P  S  S  L  L  G  S  N  F  P  R  S  S  F  P  L  F  S  T  K  H  L  H  P  N  A  L  R  *  L  R  I  G  F  L  L  L  S  N  S </first_frame>
            <second_frame>  L  M  Y  S  D  G  I  Q  S  S  T  R  Y  L  I  T  L  F  H  F  I  S  L  F  R  *  T  M  I  L  I  I  K  V  I  F  Q  L  L  I  C  I  S  F  T  S  F  N  F  L  *  I  E  Q  L  D  H  I  I  F  I  I  *  S  I  I  F  Q  A  S  I  F  I  K  Y  N  M  N  A  F  F  S  A  F  E  F  V  C  *  I  F  C  K  P  Y  S  M  K  N  I  Q  Q  I  L  L  H  H  S  *  D  Q  I  F  P  D  H  P  F  H  C  S  A  Q  N  I  C  I  Q  M  L  *  D  S  S  A  *  A  F  C  C  *  A  T   </second_frame>
            <third_frame>   *  C  T  L  M  E  F  R  V  V  P  G  T  S  S  H  F  S  T  L  S  A  S  S  G  R  L  *  F  *  S  S  R  S  F  F  N  C  *  S  A  S  A  S  L  L  S  I  F  C  E  L  N  S  L  I  T  S  S  S  S  F  D  P  L  F  F  K  L  P  S  S  S  N  T  T  *  M  L  S  S  V  H  L  S  S  F  V  E  Y  S  V  S  L  T  R  *  R  I  S  N  K  Y  S  F  I  T  P  R  I  K  F  S  Q  I  I  L  S  I  V  Q  H  K  T  S  A  S  K  C  S  K  I  A  P  H  R  L  S  V  V  E  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0034P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="127327" PGL_stop="135264"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127327" e_stop="127723"/>
            <exon e_start="129723" e_stop="130035"/>
            <exon e_start="131748" e_stop="131849"/>
            <exon e_start="133552" e_stop="135264"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="0.960"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="0.981"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="127327" e_stop="127723" e_length="397"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="127724" i_stop="129722" i_length="1999"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="129723" e_stop="130035" e_length="313"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="130036" i_stop="131747" i_length="1712"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="131748" e_stop="131849" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="131850" i_stop="133551" i_length="1702"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="133552" e_stop="135264" e_length="1713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127327" stop="127723"/>
              <exon start="129723" stop="130035"/>
              <exon start="131748" stop="131849"/>
              <exon start="133552" stop="135264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583983" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAATTCCCATTTAAAGGGGAAAAATATTCTCAAAATTTTTCTGTTCACAACACTGCATTTCTGCCTTAAACTATACCCCAATGATTTGAATTCGAATTTTTTTATCTGATTTTATAATTAATTTTAAATATAAATATATAAATAATATATCAAAATTCATATTTACAATTATAATAAATTTTAAATTCTAAATTCGATGATTGGCCCACAGTGGAACAATGTTAGCTCTAAATCATGCCATCTATAAATATATATACATTGGCTTACCATTTTGGTCAATTGTTTCACAAAGTTTTCTTCTCTCACTTTATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATTGAG : GAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGCTTGATCCACAACAAGTGATTGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAAAATTCAAGAAAAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAAACAGATCAAGTTTCTTTCAAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTTGTAGAATTGTTGATGGTGATCTTACTCCTATTCTCACTAGAAAGCCTATTACTACCATCTCGTTGAG : TTCTGGTACAACTCAAGGAAAGCCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAG : AGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCCTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTGCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTGGTATGATTTTGTTCTTCCCTTCCTTGGAAATACTTTTCATAGTATTGCTCCTGTAGTTTCTTTGTCCTTCAATTTTTATTGCTTTCTGTTATTTGTTATACTTCGATTGTCATATATTTACTGCTTTTGTTATGCTTTAACTTCCGTTACTCCTTTTTTGGACTGTTTGTTTCTTGAGTTGAGGGTCTATTACAACCTCTCTACCTCTGGATAAGGTCTGCATACACTCTATCCTCCTCAGATCCCATTTGGGACCTTATGTTGTTATTCGTTTTGACTTGATTGAATATATACCGTGTAAGATGCAGGTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCACAGCTGCTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACAACAGCTGATCCAGGGCACTATGTAATCTTCTGGGAACTGAATGGTGAGGCAAGTGAGGAAATTCTGAAAGAATGTTGTAATTGTTTGGACAAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAATTGTAAGCTGATTACTTTTCATATCTTAATAATACACTCTGAATTTGTAC</gDNA_template>
            <first_frame> S  N  S  H  L  K  G  K  N  I  L  K  I  F  L  F  T  T  L  H  F  C  L  K  L  Y  P  N  D  L  N  S  N  F  F  I  *  F  Y  N  *  F  *  I  *  I  Y  K  *  Y  I  K  I  H  I  Y  N  Y  N  K  F  *  I  L  N  S  M  I  G  P  Q  W  N  N  V  S  S  K  S  C  H  L  *  I  Y  I  H  W  L  T  I  L  V  N  C  F  T  K  F  S  S  L  T  L  F  I  V  Y  V  F  F  S  L  K  S  K  L  T  Y  I  F  P  F  S  S  I  L  A  I  V  Y  *   : G  R  I  *  M  K  M  V  E  E  R  E  N  K  L  D  P  Q  Q  V  I  D  E  F  E  L  L  S  K  D  A  G  K  I  Q  E  K  T  L  Q  K  I  L  E  E  N  G  R  T  E  Y  L  Q  Q  W  G  L  N  G  K  T  D  Q  V  S  F  K  N  C  V  P  L  V  T  H  K  D  L  E  P  Y  I  C  R  I  V  D  G  D  L  T  P  I  L  T  R  K  P  I  T  T  I  S  L  S :   S  G  T  T  Q  G  K  P  K  F  V  P  F  N  E  E  L  M  E  S  T  M  Q  I  F  K  T  S  F  A  F  R  N  R :   E  F  P  V  V  N  G  K  A  L  Q  F  I  Y  G  S  K  Q  F  K  T  K  G  G  L  A  A  G  T  A  T  T  N  V  Y  R  N  S  Q  F  K  K  T  M  K  A  M  Q  T  P  C  C  S  P  D  E  V  I  F  G  P  D  F  H  Q  S  L  Y  C  H  L  L  C  G  L  I  L  R  N  E  V  Q  V  V  S  S  T  F  A  H  S  I  V  H  A  F  R  Q  F  E  Q  V  W  Q  E  L  V  A  N  I  R  D  G  V  L  S  S  R  V  N  V  P  S  I  R  S  A  M  S  K  L  L  K  P  D  P  E  L  A  D  T  I  Y  N  K  C  I  R  L  S  N  W  Y  G  L  I  P  E  L  F  P  N  T  R  Y  I  Y  G  I  M  T  G  S  M  E  P  Y  L  T  K  L  R  H  Y  A  G  D  L  P  L  L  S  A  D  Y  G  S  S  E  G  W  I  G  A  N  V  N  P  E  L  P  P  E  L  V  T  Y  A  V  L  P  N  I  G  Y  F  E  F  I  P  L  V  E  N  V  D  G  V  E  A  T  P  V  G  L  T  E  V  K  L  D  E  E  Y  E  I  V  V  T  N  F  A  G  M  I  L  F  F  P  S  L  E  I  L  F  I  V  L  L  L  *  F  L  C  P  S  I  F  I  A  F  C  Y  L  L  Y  F  D  C  H  I  F  T  A  F  V  M  L  *  L  P  L  L  L  F  W  T  V  C  F  L  S  *  G  S  I  T  T  S  L  P  L  D  K  V  C  I  H  S  I  L  L  R  S  H  L  G  P  Y  V  V  I  R  F  D  L  I  E  Y  I  P  C  K  M  Q  V  Y  I  D  T  G  L  V  M  W  *  R  *  K  D  S  T  I  A  L  P  S  S  N  L  F  V  V  G  I  S  Y  *  A  S  T  S  T  K  T  L  R  K  I  Y  N  *  P  W  K  Q  Q  H  S  C  Y  *  T  R  S  *  K  *  S  I  S  L  A  T  *  T  Q  Q  L  I  Q  G  T  M  *  S  S  G  N  *  M  V  R  Q  V  R  K  F  *  K  N  V  V  I  V  W  T  N  L  S  S  M  L  A  M  L  A  L  G  R  S  K  P  S  V  P  L  S  Y  G  *  *  R  E  G  H  F  I  R  F  *  I  I  L  *  D  *  E  Q  Q  L  A  S  S  K  L  R  D  V  S  V  Q  R  I  S  L  C  C  K  Y  *  L  V  M  L  L  R  A  I  L  V  L  H  L  V  E  L  Y  V  C  L  F  P  E  L  *  A  D  Y  F  S  Y  L  N  N  T  L  *  I  C   </first_frame>
            <second_frame>  V  I  P  I  *  R  G  K  I  F  S  K  F  F  C  S  Q  H  C  I  S  A  L  N  Y  T  P  M  I  *  I  R  I  F  L  S  D  F  I  I  N  F  K  Y  K  Y  I  N  N  I  S  K  F  I  F  T  I  I  I  N  F  K  F  *  I  R  *  L  A  H  S  G  T  M  L  A  L  N  H  A  I  Y  K  Y  I  Y  I  G  L  P  F  W  S  I  V  S  Q  S  F  L  L  S  L  Y  L  *  Y  M  C  F  F  H  L  N  P  S  *  H  I  Y  F  P  S  L  R  F  *  L  S  F  I  E  :  E  E  Y  K  *  R  W  W  R  K  G  R  I  S  L  I  H  N  K  *  L  M  N  L  S  Y  *  A  K  M  L  G  K  F  K  K  R  P  Y  K  R  F  L  K  K  M  E  G  Q  N  I  C  N  N  G  V  L  M  G  K  Q  I  K  F  L  S  R  I  V  F  L  L  L  H  I  R  I  W  S  L  T  F  V  E  L  L  M  V  I  L  L  L  F  S  L  E  S  L  L  L  P  S  R  *   : V  L  V  Q  L  K  E  S  Q  N  L  Y  L  S  M  K  N  *  W  N  P  P  C  K  Y  S  R  L  L  L  P  L  G  T   : E  N  S  Q  L  *  M  G  K  H  Y  S  S  F  M  E  A  N  S  S  R  R  R  E  V  *  Q  L  E  Q  P  Q  Q  M  C  I  E  I  R  N  S  R  R  Q  *  K  Q  C  R  P  H  V  V  A  L  M  K  *  Y  S  A  L  I  S  I  S  P  C  T  V  I  S  C  V  V  S  F  Y  V  T  K  F  K  L  S  H  L  H  L  L  I  V  L  S  M  L  L  D  N  S  N  K  Y  G  K  N  L  L  L  T  *  G  T  E  S  F  Q  V  A  *  M  S  L  L  *  D  Q  Q  C  Q  N  Y  S  N  L  I  Q  N  W  L  I  L  F  I  T  S  A  F  G  *  V  I  G  T  G  *  Y  L  N  Y  S  P  T  Q  G  T  Y  M  V  S  *  P  D  Q  W  N  L  T  *  R  N  *  G  I  M  Q  G  I  Y  L  C  L  V  Q  I  T  D  L  L  K  D  G  S  E  Q  M  L  I  L  N  C  L  L  S  *  L  L  M  L  Y  F  L  I  L  V  I  S  N  S  F  L  S  W  K  M  *  M  A  W  R  L  H  Q  L  V  *  L  K  L  N  S  M  K  S  M  K  L  L  S  P  I  S  L  V  *  F  C  S  S  L  P  W  K  Y  F  S  *  Y  C  S  C  S  F  F  V  L  Q  F  L  L  L  S  V  I  C  Y  T  S  I  V  I  Y  L  L  L  L  L  C  F  N  F  R  Y  S  F  F  G  L  F  V  S  *  V  E  G  L  L  Q  P  L  Y  L  W  I  R  S  A  Y  T  L  S  S  S  D  P  I  W  D  L  M  L  L  F  V  L  T  *  L  N  I  Y  R  V  R  C  R  F  I  S  I  Q  A  W  *  C  G  K  D  K  R  I  P  Q  S  H  S  R  A  P  I  Y  L  S  *  E  S  L  T  K  H  Q  H  R  Q  K  H  *  E  R  F  T  T  S  R  G  S  S  S  T  A  A  I  K  R  E  V  R  S  S  R  F  L  *  Q  R  K  H  N  S  *  S  R  A  L  C  N  L  L  G  T  E  W  *  G  K  *  G  N  S  E  R  M  L  *  L  F  G  Q  I  F  R  R  C  W  L  C  *  L  S  E  G  Q  N  H  R  C  P  *  A  T  D  S  E  E  R  D  I  S  *  D  F  R  S  F  C  R  T  R  S  S  S  *  P  V  Q  N  S  E  M  C  R  Y  N  E  S  L  C  A  A  N  I  D  *  *  C  C  *  E  L  F  *  Y  C  I  *  L  N  Y  M  Y  V  C  S  Q  N  C  K  L  I  T  F  H  I  L  I  I  H  S  E  F  V  </second_frame>
            <third_frame>   *  F  P  F  K  G  E  K  Y  S  Q  N  F  S  V  H  N  T  A  F  L  P  *  T  I  P  Q  *  F  E  F  E  F  F  Y  L  I  L  *  L  I  L  N  I  N  I  *  I  I  Y  Q  N  S  Y  L  Q  L  *  *  I  L  N  S  K  F  D  D  W  P  T  V  E  Q  C  *  L  *  I  M  P  S  I  N  I  Y  T  L  A  Y  H  F  G  Q  L  F  H  K  V  F  F  S  H  F  I  Y  S  I  C  V  F  F  T  *  I  Q  A  D  I  Y  I  S  L  L  F  D  S  S  Y  R  L  L  R :   K  N  I  N  E  D  G  G  G  K  G  E  *  A  *  S  T  T  S  D  *  *  I  *  A  I  K  Q  R  C  W  E  N  S  R  K  D  L  T  K  D  S  *  R  K  W  K  D  R  I  F  A  T  M  G  S  *  W  E  N  R  S  S  F  F  Q  E  L  C  S  S  C  Y  T  *  G  F  G  A  L  H  L  *  N  C  *  W  *  S  Y  S  Y  S  H  *  K  A  Y  Y  Y  H  L  V  E  :  F  W  Y  N  S  R  K  A  K  I  C  T  F  Q  *  R  I  D  G  I  H  H  A  N  I  Q  D  F  F  C  L  *  E  Q  :  R  I  P  S  C  K  W  E  S  I  T  V  H  L  W  K  Q  T  V  Q  D  E  G  R  F  S  S  W  N  S  H  N  K  C  V  S  K  F  A  I  Q  E  D  N  E  S  N  A  D  P  M  L  *  P  *  *  S  D  I  R  P  *  F  P  S  V  L  V  L  S  S  P  V  W  S  H  F  T  *  R  S  S  S  C  L  I  Y  I  C  S  *  Y  C  P  C  F  *  T  I  R  T  S  M  A  R  T  C  C  *  H  K  G  R  S  P  F  K  S  R  K  C  P  F  Y  K  I  S  N  V  K  I  T  Q  T  *  S  R  T  G  *  Y  Y  L  *  Q  V  H  S  V  K  *  L  V  R  V  D  T  *  I  I  P  Q  H  K  V  H  I  W  Y  H  D  R  I  N  G  T  L  L  D  E  I  E  A  L  C  R  G  F  T  S  A  *  C  R  L  R  I  F  *  R  M  D  R  S  K  C  *  S  *  I  A  S  *  A  S  Y  L  C  C  T  S  *  Y  W  L  F  R  I  H  S  S  R  G  K  C  R  W  R  G  G  Y  T  S  W  F  N  *  S  *  T  R  *  R  V  *  N  C  C  H  Q  F  R  W  Y  D  F  V  L  P  F  L  G  N  T  F  H  S  I  A  P  V  V  S  L  S  F  N  F  Y  C  F  L  L  F  V  I  L  R  L  S  Y  I  Y  C  F  C  Y  A  L  T  S  V  T  P  F  L  D  C  L  F  L  E  L  R  V  Y  Y  N  L  S  T  S  G  *  G  L  H  T  L  Y  P  P  Q  I  P  F  G  T  L  C  C  Y  S  F  *  L  D  *  I  Y  T  V  *  D  A  G  L  Y  R  Y  R  L  G  D  V  V  K  I  K  G  F  H  N  R  T  P  E  L  Q  F  I  C  R  R  N  L  L  L  S  I  N  I  D  K  N  T  E  K  D  L  Q  L  A  V  E  A  A  A  Q  L  L  L  N  E  K  L  E  V  V  D  F  S  S  N  V  N  T  T  A  D  P  G  H  Y  V  I  F  W  E  L  N  G  E  A  S  E  E  I  L  K  E  C  C  N  C  L  D  K  S  F  V  D  A  G  Y  V  S  S  R  K  V  K  T  I  G  A  L  E  L  R  I  V  K  R  G  T  F  H  K  I  L  D  H  F  V  G  L  G  A  A  V  S  Q  F  K  T  P  R  C  V  G  T  T  N  L  S  V  L  Q  I  L  T  S  N  V  V  E  S  Y  F  S  T  A  F  S  *  I  I  C  M  F  V  P  R  I  V  S  *  L  L  F  I  S  *  *  Y  T  L  N  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129734" stop="130035"/>
                    <exon start="131748" stop="131849"/>
                    <exon start="133552" stop="134395"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKMVEERENKLDPQQVIDEFELLSKDAGKIQEKTLQKILEENGRTEYLQQWGLNGKTDQVSFKNCVPLVTHKDLEPYICRIVDGDLTPILTRKPITTISLSSGTTQGKPKFVPFNEELMESTMQIFKTSFAFRNREFPVVNGKALQFIYGSKQFKTKGGLAAGTATTNVYRNSQFKKTMKAMQTPCCSPDEVIFGPDFHQSLYCHLLCGLILRNEVQVVSSTFAHSIVHAFRQFEQVWQELVANIRDGVLSSRVNVPSIRSAMSKLLKPDPELADTIYNKCIRLSNWYGLIPELFPNTRYIYGIMTGSMEPYLTKLRHYAGDLPLLSADYGSSEGWIGANVNPELPPELVTYAVLPNIGYFEFIPLVENVDGVEATPVGLTEVKLDEEYEIVVTNFAGMILFFPSLEILFIVLLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134641" stop="135189"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAGLYRYRLGDVVKIKGFHNRTPELQFICRRNLLLSINIDKNTEKDLQLAVEAAAQLLLNEKLEVVDFSSNVNTTADPGHYVIFWELNGEASEEILKECCNCLDKSFVDAGYVSSRKVKTIGALELRIVKRGTFHKILDHFVGLGAAVSQFKTPRCVGTTNLSVLQILTSNVVESYFSTAFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="134013" e_stop="134339"/>
            <exon e_start="134648" e_stop="134805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="134013" e_stop="134339" e_length="327"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="134340" i_stop="134647" i_length="308"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134648" e_stop="134805" e_length="158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134013" stop="134339"/>
              <exon start="134648" stop="134805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTG : GTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCA</gDNA_template>
            <first_frame> G  *  Y  L  N  Y  S  P  T  Q  G  T  Y  M  V  S  *  P  D  Q  W  N  L  T  *  R  N  *  G  I  M  Q  G  I  Y  L  C  L  V  Q  I  T  D  L  L  K  D  G  S  E  Q  M  L  I  L  N  C  L  L  S  *  L  L  M  L  Y  F  L  I  L  V  I  S  N  S  F  L  S  W  K  M  *  M  A  W  R  L  H  Q  L  V  *  L  K  L  N  S  M  K  S  M  K  L  L  S  P  I  S  L  :  V  Y  I  D  T  G  L  V  M  W  *  R  *  K  D  S  T  I  A  L  P  S  S  N  L  F  V  V  G  I  S  Y  *  A  S  T  S  T  K  T  L  R  K  I  Y  N  *  P  W  K  Q  Q   </first_frame>
            <second_frame>  V  D  T  *  I  I  P  Q  H  K  V  H  I  W  Y  H  D  R  I  N  G  T  L  L  D  E  I  E  A  L  C  R  G  F  T  S  A  *  C  R  L  R  I  F  *  R  M  D  R  S  K  C  *  S  *  I  A  S  *  A  S  Y  L  C  C  T  S  *  Y  W  L  F  R  I  H  S  S  R  G  K  C  R  W  R  G  G  Y  T  S  W  F  N  *  S  *  T  R  *  R  V  *  N  C  C  H  Q  F  R  W :   F  I  S  I  Q  A  W  *  C  G  K  D  K  R  I  P  Q  S  H  S  R  A  P  I  Y  L  S  *  E  S  L  T  K  H  Q  H  R  Q  K  H  *  E  R  F  T  T  S  R  G  S  S  S  </second_frame>
            <third_frame>   L  I  P  E  L  F  P  N  T  R  Y  I  Y  G  I  M  T  G  S  M  E  P  Y  L  T  K  L  R  H  Y  A  G  D  L  P  L  L  S  A  D  Y  G  S  S  E  G  W  I  G  A  N  V  N  P  E  L  P  P  E  L  V  T  Y  A  V  L  P  N  I  G  Y  F  E  F  I  P  L  V  E  N  V  D  G  V  E  A  T  P  V  G  L  T  E  V  K  L  D  E  E  Y  E  I  V  V  T  N  F  A   : G  L  Y  R  Y  R  L  G  D  V  V  K  I  K  G  F  H  N  R  T  P  E  L  Q  F  I  C  R  R  N  L  L  L  S  I  N  I  D  K  N  T  E  K  D  L  Q  L  A  V  E  A  A  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134015" stop="134339"/>
                    <exon start="134648" stop="134805"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIPELFPNTRYIYGIMTGSMEPYLTKLRHYAGDLPLLSADYGSSEGWIGANVNPELPPELVTYAVLPNIGYFEFIPLVENVDGVEATPVGLTEVKLDEEYEIVVTNFAGLYRYRLGDVVKIKGFHNRTPELQFICRRNLLLSINIDKNTEKDLQLAVEAAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="129920" e_stop="130035"/>
            <exon e_start="131748" e_stop="131849"/>
            <exon e_start="133586" e_stop="133998"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="0.974"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="129920" e_stop="130035" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="130036" i_stop="131747" i_length="1712"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="131748" e_stop="131849" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="131850" i_stop="133585" i_length="1736"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="133586" e_stop="133998" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129920" stop="130035"/>
              <exon start="131748" stop="131849"/>
              <exon start="133586" stop="133998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588102" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTTGTAGAATTGTTGATGGTGATCTTACTCCTATTCTCACTAGAAAGCCTATTACTACCATCTCGTTGAG : TTCTGGTACAACTCAAGGAAAGCCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAG : TTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCCTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTGCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTT</gDNA_template>
            <first_frame> K  N  C  V  P  L  V  T  H  K  D  L  E  P  Y  I  C  R  I  V  D  G  D  L  T  P  I  L  T  R  K  P  I  T  T  I  S  L  S :   S  G  T  T  Q  G  K  P  K  F  V  P  F  N  E  E  L  M  E  S  T  M  Q  I  F  K  T  S  F  A  F  R  N  S :   S  F  M  E  A  N  S  S  R  R  R  E  V  *  Q  L  E  Q  P  Q  Q  M  C  I  E  I  R  N  S  R  R  Q  *  K  Q  C  R  P  H  V  V  A  L  M  K  *  Y  S  A  L  I  S  I  S  P  C  T  V  I  S  C  V  V  S  F  Y  V  T  K  F  K  L  S  H  L  H  L  L  I  V  L  S  M  L  L  D  N  S  N  K  Y  G  K  N  L  L  L  T  *  G  T  E  S  F  Q  V  A  *  M  S  L  L  *  D  Q  Q  C  Q  N  Y  S  N  L  I  Q  N  W  L  I  L  F  I  T  S  A  F  G  </first_frame>
            <second_frame>  R  I  V  F  L  L  L  H  I  R  I  W  S  L  T  F  V  E  L  L  M  V  I  L  L  L  F  S  L  E  S  L  L  L  P  S  R  *   : V  L  V  Q  L  K  E  S  Q  N  L  Y  L  S  M  K  N  *  W  N  P  P  C  K  Y  S  R  L  L  L  P  L  G  T   : V  H  L  W  K  Q  T  V  Q  D  E  G  R  F  S  S  W  N  S  H  N  K  C  V  S  K  F  A  I  Q  E  D  N  E  S  N  A  D  P  M  L  *  P  *  *  S  D  I  R  P  *  F  P  S  V  L  V  L  S  S  P  V  W  S  H  F  T  *  R  S  S  S  C  L  I  Y  I  C  S  *  Y  C  P  C  F  *  T  I  R  T  S  M  A  R  T  C  C  *  H  K  G  R  S  P  F  K  S  R  K  C  P  F  Y  K  I  S  N  V  K  I  T  Q  T  *  S  R  T  G  *  Y  Y  L  *  Q  V  H  S  V </second_frame>
            <third_frame>   E  L  C  S  S  C  Y  T  *  G  F  G  A  L  H  L  *  N  C  *  W  *  S  Y  S  Y  S  H  *  K  A  Y  Y  Y  H  L  V  E  :  F  W  Y  N  S  R  K  A  K  I  C  T  F  Q  *  R  I  D  G  I  H  H  A  N  I  Q  D  F  F  C  L  *  E  Q  :  F  I  Y  G  S  K  Q  F  K  T  K  G  G  L  A  A  G  T  A  T  T  N  V  Y  R  N  S  Q  F  K  K  T  M  K  A  M  Q  T  P  C  C  S  P  D  E  V  I  F  G  P  D  F  H  Q  S  L  Y  C  H  L  L  C  G  L  I  L  R  N  E  V  Q  V  V  S  S  T  F  A  H  S  I  V  H  A  F  R  Q  F  E  Q  V  W  Q  E  L  V  A  N  I  R  D  G  V  L  S  S  R  V  N  V  P  S  I  R  S  A  M  S  K  L  L  K  P  D  P  E  L  A  D  T  I  Y  N  K  C  I  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131844" stop="131849"/>
                    <exon start="133586" stop="133996"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQFIYGSKQFKTKGGLAAGTATTNVYRNSQFKKTMKAMQTPCCSPDEVIFGPDFHQSLYCHLLCGLILRNEVQVVSSTFAHSIVHAFRQFEQVWQELVANIRDGVLSSRVNVPSIRSAMSKLLKPDPELADTIYNKCIR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="171182" PGL_stop="145683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="171182" e_stop="170739"/>
            <exon e_start="146274" e_stop="146064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.944"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="171182" e_stop="170739" e_length="444"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="170738" i_stop="146275" i_length="24464"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="146274" e_stop="146064" e_length="211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="171182" stop="170739"/>
              <exon start="146274" stop="146064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594021" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCACGTGTACAAGCCTCTAAAGTATTACAATTGATTCAAAAGAAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATAGAACAAGATCATAATTATGGAGAAGAAAGTCTGCCGAGATGGAAACAACTACCTCACAAATCTCCAAGAAACCTCGGAAAAGAAGAGAATGACAAGTACAACAAAAATCCAGGCTCATAACCTACAAAAAAATTGTAGTAGCAAGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAATCTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCCAACCGAACCTCCACAACTACAACCTGCATTAAAATCAACCCAACCTAACAGCTCACAATTTACATAACACATAGCTCAATAACAACACTTAGATAAATTACATATCCTCAACAACAACACTTTCACAAATTAC : ATATCCTCAACAACAACACTTTAACAAATTACATATCCTCAACAACAATACTTCAAAAAATTACATATCCGCAATAACAAACTCAATATTGATCAATCATAAGTTCAACAGAAAGGCAATCAGAAGATCAACAAAACACGATATCAAGTTCACTAATGTTAAGTATGTGCATTACAATGGAATGCAATGTCAAGTATAATGATGCATGTCT</gDNA_template>
            <first_frame> V  T  C  T  S  L  *  S  I  T  I  D  S  K  E  K  L  K  S  Q  M  N  L  F  L  E  *  N  K  I  I  I  M  E  K  K  V  C  R  D  G  N  N  Y  L  T  N  L  Q  E  T  S  E  K  K  R  M  T  S  T  T  K  I  Q  A  H  N  L  Q  K  N  C  S  S  K  G  E  Y  Q  T  T  R  Y  S  A  S  K  S  L  N  T  S  *  G  D  E  I  R  V  L  L  P  P  P  T  E  P  P  Q  L  Q  P  A  L  K  S  T  Q  P  N  S  S  Q  F  T  *  H  I  A  Q  *  Q  H  L  D  K  L  H  I  L  N  N  N  T  F  T  N  Y  :  I  S  S  T  T  T  L  *  Q  I  T  Y  P  Q  Q  Q  Y  F  K  K  L  H  I  R  N  N  K  L  N  I  D  Q  S  *  V  Q  Q  K  G  N  Q  K  I  N  K  T  R  Y  Q  V  H  *  C  *  V  C  A  L  Q  W  N  A  M  S  S  I  M  M  H  V  </first_frame>
            <second_frame>  S  R  V  Q  A  S  K  V  L  Q  L  I  Q  K  K  N  S  S  L  K  *  T  C  F  *  N  R  T  R  S  *  L  W  R  R  K  S  A  E  M  E  T  T  T  S  Q  I  S  K  K  P  R  K  R  R  E  *  Q  V  Q  Q  K  S  R  L  I  T  Y  K  K  I  V  V  A  R  V  S  T  K  P  H  G  T  Q  Q  V  N  L  *  T  Q  A  K  G  M  K  Y  G  Y  S  Y  H  P  Q  P  N  L  H  N  Y  N  L  H  *  N  Q  P  N  L  T  A  H  N  L  H  N  T  *  L  N  N  N  T  *  I  N  Y  I  S  S  T  T  T  L  S  Q  I  T :   Y  P  Q  Q  Q  H  F  N  K  L  H  I  L  N  N  N  T  S  K  N  Y  I  S  A  I  T  N  S  I  L  I  N  H  K  F  N  R  K  A  I  R  R  S  T  K  H  D  I  K  F  T  N  V  K  Y  V  H  Y  N  G  M  Q  C  Q  V  *  *  C  M  S </second_frame>
            <third_frame>   H  V  Y  K  P  L  K  Y  Y  N  *  F  K  R  K  T  Q  V  S  N  E  L  V  S  R  I  E  Q  D  H  N  Y  G  E  E  S  L  P  R  W  K  Q  L  P  H  K  S  P  R  N  L  G  K  E  E  N  D  K  Y  N  K  N  P  G  S  *  P  T  K  K  L  *  *  Q  G  *  V  P  N  H  T  V  L  S  K  *  I  S  K  H  K  L  R  G  *  N  T  G  T  P  T  T  P  N  R  T  S  T  T  T  T  C  I  K  I  N  P  T  *  Q  L  T  I  Y  I  T  H  S  S  I  T  T  L  R  *  I  T  Y  P  Q  Q  Q  H  F  H  K  L   : H  I  L  N  N  N  T  L  T  N  Y  I  S  S  T  T  I  L  Q  K  I  T  Y  P  Q  *  Q  T  Q  Y  *  S  I  I  S  S  T  E  R  Q  S  E  D  Q  Q  N  T  I  S  S  S  L  M  L  S  M  C  I  T  M  E  C  N  V  K  Y  N  D  A  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="170779" stop="170739"/>
                    <exon start="146274" stop="146076"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INYISSTTTLSQITYPQQQHFNKLHILNNNTSKNYISAITNSILINHKFNRKAIRRSTKHDIKFTNVKYVHYNGMQCQV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="171101" stop="170904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKIIIMEKKVCRDGNNYLTNLQETSEKKRMTSTTKIQAHNLQKNCSSKGEYQTTRYSASKSLNTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="146284" e_stop="145904"/>
            <exon e_start="145865" e_stop="145683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.921"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="146284" e_stop="145904" e_length="381"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="145903" i_stop="145866" i_length="38"/>
          </intron>
          <exon e_serial="2" e_score="0.929">
            <gDNA_exon_boundary e_start="145865" e_stop="145683" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146284" stop="145904"/>
              <exon start="145865" stop="145683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594026" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAAATTACATATCCTCAACAACAACACTTTAACAAATTACATATCCTCAACAACAATACTTCAAAAAATTACATATCCGCAATAACAAACTCAATATTGATCAATCATAAGTTCAACAGAAAGGCAATCAGAAGATCAACAAAACACGATATCAAGTTCACTAATGTTAAGTATGTGCATTACAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACATGACCCTCGATAATAGTAACCATCGCGGCGCGCGATACATCCCTCGAAATATATTATCCATCGCGACGCGCGATAC : GTCCCTCGAAATGTTACATCCTCTTAAGTACTCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCATAATAATGCAGATGACAAGTTCACACAAATAATGAGGAGATGACCATTTTCATAACATTGCACAATTCACAACCACACAAACATGAAATCACATCAACAATGATTC</gDNA_template>
            <first_frame> D  K  L  H  I  L  N  N  N  T  L  T  N  Y  I  S  S  T  T  I  L  Q  K  I  T  Y  P  Q  *  Q  T  Q  Y  *  S  I  I  S  S  T  E  R  Q  S  E  D  Q  Q  N  T  I  S  S  S  L  M  L  S  M  C  I  T  M  E  C  N  V  K  Y  N  D  A  C  L  T  *  *  Y  T  P  A  V  S  Q  S  G  T  H  G  G  H  I  C  P  C  I  C  R  G  A  R  H  D  P  R  *  *  *  P  S  R  R  A  I  H  P  S  K  Y  I  I  H  R  D  A  R  Y  :  V  P  R  N  V  T  S  S  *  V  L  I  L  S  Q  C  T  *  H  L  S  Q  P  M  P  H  N  N  A  D  D  K  F  T  Q  I  M  R  R  *  P  F  S  *  H  C  T  I  H  N  H  T  N  M  K  S  H  Q  Q  *  F </first_frame>
            <second_frame>  T  N  Y  I  S  S  T  T  T  L  *  Q  I  T  Y  P  Q  Q  Q  Y  F  K  K  L  H  I  R  N  N  K  L  N  I  D  Q  S  *  V  Q  Q  K  G  N  Q  K  I  N  K  T  R  Y  Q  V  H  *  C  *  V  C  A  L  Q  W  N  A  M  S  S  I  M  M  H  V  *  P  S  D  T  H  P  L  S  L  S  P  G  P  M  G  D  I  S  V  H  A  S  V  A  A  H  D  M  T  L  D  N  S  N  H  R  G  A  R  Y  I  P  R  N  I  L  S  I  A  T  R  D  T :   S  L  E  M  L  H  P  L  K  Y  S  F  F  L  N  A  H  N  T  C  H  N  Q  C  L  I  I  M  Q  M  T  S  S  H  K  *  *  G  D  D  H  F  H  N  I  A  Q  F  T  T  T  Q  T  *  N  H  I  N  N  D   </second_frame>
            <third_frame>   Q  I  T  Y  P  Q  Q  Q  H  F  N  K  L  H  I  L  N  N  N  T  S  K  N  Y  I  S  A  I  T  N  S  I  L  I  N  H  K  F  N  R  K  A  I  R  R  S  T  K  H  D  I  K  F  T  N  V  K  Y  V  H  Y  N  G  M  Q  C  Q  V  *  *  C  M  S  D  L  V  I  H  T  R  C  L  S  V  R  D  P  W  G  T  Y  L  S  M  H  L  S  R  R  T  T  *  P  S  I  I  V  T  I  A  A  R  D  T  S  L  E  I  Y  Y  P  S  R  R  A  I   : R  P  S  K  C  Y  I  L  L  S  T  H  S  F  S  M  H  I  T  L  V  T  T  N  A  S  *  *  C  R  *  Q  V  H  T  N  N  E  E  M  T  I  F  I  T  L  H  N  S  Q  P  H  K  H  E  I  T  S  T  M  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146061" stop="145904"/>
                    <exon start="145865" stop="145757"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSDTHPLSLSPGPMGDISVHASVAAHDMTLDNSNHRGARYIPRNILSIATRDTSLEMLHPLKYSFFLNAHNTCHNQCLIIMQMTSSHK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146282" stop="146076"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QITYPQQQHFNKLHILNNNTSKNYISAITNSILINHKFNRKAIRRSTKHDIKFTNVKYVHYNGMQCQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="178501" PGL_stop="178176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="178501" e_stop="178176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="178501" e_stop="178176" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="178501" stop="178176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATCTGTCCCAGGCTTGGCTAACGTTACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGAAAGACAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGAAAAGACCTATATACCTTTTCAACTATCACAGACTCACCCACCGGAGTACAAGCACGAATAGGCATGTCAAGCAATTCACAATTTAAATTAAGTCCAGTAACAAATGCGGAAGATACATATGAAAATGTGGAGCCAGGGTCAAATAATACAGAAGCCATACAATCAC</gDNA_template>
            <first_frame> R  I  C  P  R  L  G  *  R  Y  S  F  S  I  T  I  *  D  C  K  I  W  R  K  T  S  H  T  Q  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  Q  K  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  T  S  T  N  R  H  V  K  Q  F  T  I  *  I  K  S  S  N  K  C  G  R  Y  I  *  K  C  G  A  R  V  K  *  Y  R  S  H  T  I   </first_frame>
            <second_frame>  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  R  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  K  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  Q  A  R  I  G  M  S  S  N  S  Q  F  K  L  S  P  V  T  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  I  Q  S  </second_frame>
            <third_frame>   D  L  S  Q  A  W  L  T  L  Q  F  *  H  Y  N  L  R  L  Q  N  L  E  K  D  K  S  Y  P  E  L  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  K  S  P  E  K  T  Y  I  P  F  Q  L  S  Q  T  H  P  P  E  Y  K  H  E  *  A  C  Q  A  I  H  N  L  N  *  V  Q  *  Q  M  R  K  I  H  M  K  M  W  S  Q  G  Q  I  I  Q  K  P  Y  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="178368" stop="178177"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKVTRKDLYTFSTITDSPTGVQARIGMSSNSQFKLSPVTNAEDTYENVEPGSNNTEAIQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="178198" PGL_stop="178838"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="178198" e_stop="178838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="178198" e_stop="178838" e_length="641"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="178198" stop="178838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTGACCCTGGCTCCACATTTTCATATGTATCTTCCGCATTTGTTACTGGACTTAATTTAAATTGTGAATTGCTTGACATGCCTATTCGTGCTTGTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTATATAGGTCTTTTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGTCTTTCTCCAAATTTTGCAATCTTAGATTGTAATGCTAAAACTGTAACGTTAGCCAAGCCTGGGACAGATCCGTTAGTATGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTCCTTCGTGCTAAGAGAATGGTTAGAAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCGATTGAGTCGGTTTCAATAGTCCGTGAGTTTCTTGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGTATTGATCTGGAGCCGGGCACTCGCCCCATTTCCATACCCCCCTTATAGGATGGCTCCCGCTGAGCTAAGTGAGCTAAAGGCGCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATT</gDNA_template>
            <first_frame> I  *  P  W  L  H  I  F  I  C  I  F  R  I  C  Y  W  T  *  F  K  L  *  I  A  *  H  A  Y  S  C  L  Y  S  G  G  *  V  C  D  S  *  K  G  I  *  V  F  S  G  D  F  C  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  L  R  C  N  S  G  Y  D  L  S  F  S  K  F  C  N  L  R  L  *  C  *  N  C  N  V  S  Q  A  W  D  R  S  V  S  M  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  P  S  C  *  E  N  G  *  K  G  L  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  D  *  V  G  F  N  S  P  *  V  S  *  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  Y  *  S  G  A  G  H  S  P  H  F  H  T  P  L  I  G  W  L  P  L  S  *  V  S  *  R  R  N  F  K  S  C  *  V  K  V  S   </first_frame>
            <second_frame>  F  D  P  G  S  T  F  S  Y  V  S  S  A  F  V  T  G  L  N  L  N  C  E  L  L  D  M  P  I  R  A  C  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  F  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  C  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  L  R  A  K  R  M  V  R  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  L  *  D  G  S  R  *  A  K  *  A  K  G  A  T  S  R  V  V  K  *  R  F  H  </second_frame>
            <third_frame>   L  T  L  A  P  H  F  H  M  Y  L  P  H  L  L  L  D  L  I  *  I  V  N  C  L  T  C  L  F  V  L  V  L  R  W  V  S  L  *  *  L  K  R  Y  I  G  L  F  W  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  T  S  M  *  F  W  V  *  L  V  F  L  Q  I  L  Q  S  *  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  Y  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  S  F  V  L  R  E  W  L  E  R  V  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  R  L  S  R  F  Q  *  S  V  S  F  L  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  T  F  V  L  I  W  S  R  A  L  A  P  F  P  Y  P  P  Y  R  M  A  P  A  E  L  S  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="178199" stop="178771"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSAFVTGLNLNCELLDMPIRACTPVGESVIVEKVYRSFLVTFVGSNTHVDLVILEMVDFDVILGMTCLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSTPVRIISFLRAKRMVRKGCLAFLAHLRDDTTQVPSIESVSIVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 139 chains have been computed
$ 
$ memory statistics:
$ 105080 bytes spliced alignments in total
$ 25 spliced alignments have been stored
$ 4203 bytes was the average size of a spliced alignment
$ 24216 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1513 bytes was the average size of a predicted gene location
$ 6 megabytes was the average size of the backtrace matrix
$ 172 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:44:21
-->
