<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:24:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0061A10-VviI8/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0061A10.2" temp_strand="-" temp_description="C00HBa0061A10.2  CU927996.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0061A10 sequenced_by:sanger upload_account_name:uk">
        <position start="1767" stop="675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1467" g_stop="975" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0061A10.2" gen_strand="-" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0061A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1467" e_stop="975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTCTGCATGCAATGTCTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAACCGAACAATTTCTGAGATATAGATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGATCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACCCAATGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGAATTCTCTGAAGTGTTCCTCCGGGTCTCTGGTGTTCATACTTTACTTGTTGACAGTTTAGACATTTGACAATAAAGTTCACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594060" ref_strand="+" ref_description="SGN-U594060 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147778480|emb|CAN69431.1| (e_value=2e-91) hypothetical; (*ATH) ATMG00710.1 (e_value=1e-17) |; (*SWP) sp|P10978|POLX_TOBAC (e_value=1e-57) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>gctttctggtaaggcaagggagaatggaattgctgagaggatgaacagaacattgaatgagcgtgcaaggagtatgaggatacactgtgggctgcccaaaacactttgggcggatgctgtgagcaccgctgcatacttgatcaacaggggaccatcagttcctctagggttcaagattccaaaggaggtgtggacaggaaaagaactcaagtactcacacttgaggacttttggttgcactgcttatgttcatgttgatccagaaaagagagacaagcttgatgctaaggctgtgaagtgttacttcataggatatggttctgatttgtttggttacaggttttgggatgacaagaacagaaagatcctgagacattgtgacgtgacatttgatgagtctgtcctgtacaaggacatagagcagaaggttctagagattacaaagcaagtgggagttgaggttgagttgaagaagagtaaccccagagatgtcaaagcagatactcaaccaactcctactaaagaatctgaagtggagcaagttacacctgagcaggttttaaggagatcatccagatccatcagggcaccagataggtattcaccttcattacactatctattgctgactgatgaagggaaaccaaagtcttttgatgaggccctacaggtgcaggattcgatcaagtgggagcaagtcatggatgatgagatgaggtcacttgagaagaacaacacatgggtgttgactgagctacctgtagggaagagagctttgctgaacaagtgggtgtacagaaatcagactgaaccagatggaaaaaaaaggttcaaggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0061A10.2" temp_strand="+" temp_description="C00HBa0061A10.2  CU927996.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0061A10 sequenced_by:sanger upload_account_name:uk">
        <position start="47954" stop="49390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48252" g_stop="49090" g_length="839"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="839" r_length="839" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0061A10.2" gen_strand="+" ref_id="SGN-U594060" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0061A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48252" e_stop="49090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCATGGTAAGGCAAGACAGAATGGAATTGCTGAGAGGATGAACAGAATATTGAATGAGTGTGCAAGGACTATGAGGATACACTGTGGGCTGCCCAAAACACTTTGGGCGGATGCTGTGAGCACAGCTGCATACTTGATCAACAGGAGACCATCAGTTCCTTTAGGGTTCACGATACCAGAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCACACTTGAGGACTTTTGGTTGCACTGCTTATGTTCATGTTGATCTAGAAAAGAGAGACAAGCTTGATGCCAAGGCTGTGAAGTGTTACTTCATAGGATATGGTTCTGATTTGTTTGGTTACAGGTTTTGGGATGACAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTGTCCTGTACAAGTACAGAGTGCAAAAGGTTCTAGAGACTACAAAGCAAGTGGGAGTTGAGGTTGAGTTGGAGAAGAGTAACCCCAGAGATGTCGAAGCAGATACTCAACCAACTCCTACTGAAGAATCTGAAGTGGAGCAAGTTACACCTGAGCAGGTGTTAAGGAGATCATCCAGATCCATCAGGGCACCAGATAGGTATTCACCTTCATTACACTATCTATTGCTGACGAATGAGGGGGAACCAAAGTCTTTTGATGAGGCCCTACAGGTGGCGGATTCGATCAAGTGGGAGCAAGCAATGGATGATGAGATGAGGTCACTTGAGAAGAATGACACATGGGTGTTGACTGAGTTATCTGCAGGGAAGAGAGCTTTGCTGAACAAGTTGGTGTTTAGAATCAAGATTGAACCAGATGGGAAAAGAAGGTTCAAGGCTC</genome_strand>
        <mrna_strand>GCTTTCTGGTAAGGCAAGGGAGAATGGAATTGCTGAGAGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGGATACACTGTGGGCTGCCCAAAACACTTTGGGCGGATGCTGTGAGCACCGCTGCATACTTGATCAACAGGGGACCATCAGTTCCTCTAGGGTTCAAGATTCCAAAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCACACTTGAGGACTTTTGGTTGCACTGCTTATGTTCATGTTGATCCAGAAAAGAGAGACAAGCTTGATGCTAAGGCTGTGAAGTGTTACTTCATAGGATATGGTTCTGATTTGTTTGGTTACAGGTTTTGGGATGACAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTGTCCTGTACAAGGACATAGAGCAGAAGGTTCTAGAGATTACAAAGCAAGTGGGAGTTGAGGTTGAGTTGAAGAAGAGTAACCCCAGAGATGTCAAAGCAGATACTCAACCAACTCCTACTAAAGAATCTGAAGTGGAGCAAGTTACACCTGAGCAGGTTTTAAGGAGATCATCCAGATCCATCAGGGCACCAGATAGGTATTCACCTTCATTACACTATCTATTGCTGACTGATGAAGGGAAACCAAAGTCTTTTGATGAGGCCCTACAGGTGCAGGATTCGATCAAGTGGGAGCAAGTCATGGATGATGAGATGAGGTCACTTGAGAAGAACAACACATGGGTGTTGACTGAGCTACCTGTAGGGAAGAGAGCTTTGCTGAACAAGTGGGTGTACAGAAATCAGACTGAACCAGATGGAAAAAAAAGGTTCAAGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602494" ref_strand="+" ref_description="SGN-U602494 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147771515|emb|CAN71313.1| (e_value=8e-13) hypothetical; (*SWP) sp|P10978|POLX_TOBAC (e_value=5e-12) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>aattctgctttgcttcttgcccaattcctcaagataatctgccatccatatcatctctttcccagcttcagctattgccacaaactcagctttagtggatgaaagagaaacatacttctaaagacacggacatccaacttactgcttttccacctatggtgtaaatgtacccggacgtactcttgctcgagtcaacatccccaccaagatcagcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0061A10.2" temp_strand="-" temp_description="C00HBa0061A10.2  CU927996.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0061A10 sequenced_by:sanger upload_account_name:uk">
        <position start="50508" stop="49693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50210" g_stop="49993" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0061A10.2" gen_strand="-" ref_id="SGN-U602494" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0061A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50210" e_stop="49993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCGCTCTGCTTCTTGCCCAATTCCTCAAGATAATCTGCCAGCCATATCATCTCTTTCCCAGCTTCAGCTATTGCCACATACTTAGCTTCAGTAGATGAAAGAGAAACACACTTCTGAAG-CCTGGACATCCAACTCACTTCTGTTCCACCTATGGTGTAAATGTACCCGGATGTACTCTTGCTCGAGTCAACATCCCCACCAAGATCAGCATCC</genome_strand>
        <mrna_strand>AATTCT-GCTTTGCTTCTTGCCCAATTCCTCAAGATAATCTGCCATCCATATCATCTCTTTCCCAGCTTCAGCTATTGCCACAAACTCAGCTTTAGTGGATGAAAGAGAAACATACTTCTAAAGACACGGACATCCAACTTACTGCTTTTCCACCTATGGTGTAAATGTACCCGGACGTACTCTTGCTCGAGTCAACATCCCCACCAAGATCAGCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603109" ref_strand="+" ref_description="SGN-U603109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|169647571|gb|ACA61782.1| (e_value=1e-64) DOUBLE; (*ATH) AT1G30950.1 (e_value=1e-22)  Symbol: None | unusual floral organ (UFO) / F-box family protein (FBX1), E3 ubiquitin ligase SCF complex F-box subunit; almost identical to unusual floral organs (UFO)GI:4376159 from (Arabidopsis thaliana) Landsberg-erecta; one amino acid difference... ; (*SWP) sp|Q39090|UFO_ARATH (e_value=1e-21) Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO; ">
      <seq>ggagaagccaaaaaagagactttcccttctagttttctgccaaacattcatatctctttcctcattagtgaaaaactccacctccttaactcacatgtccactgaatttgagaaacataaaagagtaaaaataaccttaactttcctttttacaactctcctagcttcaaactcaaaatcccttttagtattatctccaattatactctaaaaatggaagcttttcatcatccccctattagctttcactttccctatgcttttcctatcccaacaccaacaaccaattttcttggaactccaaattcatcatcagttaatggaatgatcatcaacacttggatggatagtagaatttggagtagacttccacataggcttattgatagaatcattgcttttctaccaccacctgctttctttagagctagagttgtgtgtaagagattctatggacttatttactctacacattttcttgaattgtacttgcaagtttcacctaagaggaactggttcattttctttaacaaaaagtaccaagaaacaacatttacaagaacgtgatgaatagtagtaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0061A10.2" temp_strand="+" temp_description="C00HBa0061A10.2  CU927996.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0061A10 sequenced_by:sanger upload_account_name:uk">
        <position start="137499" stop="138691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137798" g_stop="138391" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0061A10.2" gen_strand="+" ref_id="SGN-U603109" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0061A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137798" e_stop="138391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGCCAAAAAAGAGACTTTCCCTTCTAGTTTTGTTTACTTTTCTGCCAAACAATTCATATCTCTTTCCTCATTAGTGAAAAACACCACCTCCTTAACTCACATGTCCACTGAATTTGAGAAACATCAAAGAGTAAAAATAACCTTAACTTTCCTTTTTACAACTCTCCTAGCTTCAAACTCAAAATCCCTTTTAGTTTTATCTCCAATTATACTCTAAAAATGGAAGCTTTTCATCATCCCCCTATTAGCTTTCACTTTCCCTATGCTTTTCCTATCCCAACACCAACAACCAATTTTCTTGGAACTCCAAATTCATCATCAATTAATGGAATGATCATCAACACTTGGATGTATAGTAGAATTTGGAGTAGACTTCCACATAGGCTTATTGATAGAATCATTGCTTTTCTACCACCACCTGCTTTCTTTAGAGCTAGAGTTGTTTATAAGAGATTCTATGGACTTATTTACTCTACACATTTTCTTGAATTGTACTTGCAAGTTTCACCTAAGAGGAACTGGTTCATTTTCTTTAAACAAAAAGTACCAAGAAACAACATTTACAAGAACATGATGAATAGTAGTGACT</genome_strand>
        <mrna_strand>GGAGAAGCCAAAAAAGAGACTTTCCCTTCTA-----G-----TTTTCTGCCAAAC-ATTCATATCTCTTTCCTCATTAGTGAAAAACTCCACCTCCTTAACTCACATGTCCACTGAATTTGAGAAACATAAAAGAGTAAAAATAACCTTAACTTTCCTTTTTACAACTCTCCTAGCTTCAAACTCAAAATCCCTTTTAGTATTATCTCCAATTATACTCTAAAAATGGAAGCTTTTCATCATCCCCCTATTAGCTTTCACTTTCCCTATGCTTTTCCTATCCCAACACCAACAACCAATTTTCTTGGAACTCCAAATTCATCATCAGTTAATGGAATGATCATCAACACTTGGATGGATAGTAGAATTTGGAGTAGACTTCCACATAGGCTTATTGATAGAATCATTGCTTTTCTACCACCACCTGCTTTCTTTAGAGCTAGAGTTGTGTGTAAGAGATTCTATGGACTTATTTACTCTACACATTTTCTTGAATTGTACTTGCAAGTTTCACCTAAGAGGAACTGGTTCATTTTCTTT-AACAAAAAGTACCAAGAAACAACATTTACAAGAACGTGATGAATAGTAGTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1467" PGL_stop="975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1467" e_stop="975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="1467" e_stop="975" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1467" stop="975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCAATTCTGCATGCAATGTCTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAACCGAACAATTTCTGAGATATAGATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGATCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACCCAATGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGAATTCTCTGAAGTGTTCCTCCGGGTCTCTGGTGTTCATACTTTACTTGTTGACAGTTTAGACATTTGACAATAAAGTTCACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGT</gDNA_template>
            <first_frame> T  Q  F  C  M  Q  C  L  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  *  W  N  P  M  Q  P  N  N  F  *  D  I  D  F  G  *  L  L  C  I  I  S  H  L  D  R  N  E  M  S  R  L  S  *  P  I  N  N  H  P  N  R  V  I  L  T  Q  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  G  N  S  L  K  C  S  S  G  S  L  V  F  I  L  Y  L  L  T  V  *  T  F  D  N  K  V  H  N  I  T  L  H  S  T  P  P  K  V  L  L  *  V  T  V  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  Q  N  S  V  D  Q  I  I  D  A  G  </first_frame>
            <second_frame>  P  N  S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  D  S  G  T  P  C  N  R  T  I  S  E  I  *  I  L  A  N  F  S  A  L  *  V  T  L  I  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  I  E  S  Y  L  P  N  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  R  H  L  T  I  K  F  T  I  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  L  I  K  S  S  T  R  G </second_frame>
            <third_frame>   P  I  L  H  A  M  S  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  I  V  E  P  H  A  T  E  Q  F  L  R  Y  R  F  W  L  T  S  L  H  Y  K  S  P  *  S  E  *  N  E  Q  T  *  L  T  Y  Q  Q  S  P  K  *  S  H  T  Y  P  M  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  W  E  F  S  E  V  F  L  R  V  S  G  V  H  T  L  L  V  D  S  L  D  I  *  Q  *  S  S  Q  Y  H  A  S  F  Y  S  T  K  S  V  A  L  G  H  G  T  S  W  L  H  P  D  V  S  N  T  L  N  Y  E  P  L  S  E  *  C  *  S  N  H  R  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0061A10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="48252" PGL_stop="49090"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48252" e_stop="49090"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="48252" e_stop="49090" e_length="839"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48252" stop="49090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594060" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCATGGTAAGGCAAGACAGAATGGAATTGCTGAGAGGATGAACAGAATATTGAATGAGTGTGCAAGGACTATGAGGATACACTGTGGGCTGCCCAAAACACTTTGGGCGGATGCTGTGAGCACAGCTGCATACTTGATCAACAGGAGACCATCAGTTCCTTTAGGGTTCACGATACCAGAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCACACTTGAGGACTTTTGGTTGCACTGCTTATGTTCATGTTGATCTAGAAAAGAGAGACAAGCTTGATGCCAAGGCTGTGAAGTGTTACTTCATAGGATATGGTTCTGATTTGTTTGGTTACAGGTTTTGGGATGACAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTGTCCTGTACAAGTACAGAGTGCAAAAGGTTCTAGAGACTACAAAGCAAGTGGGAGTTGAGGTTGAGTTGGAGAAGAGTAACCCCAGAGATGTCGAAGCAGATACTCAACCAACTCCTACTGAAGAATCTGAAGTGGAGCAAGTTACACCTGAGCAGGTGTTAAGGAGATCATCCAGATCCATCAGGGCACCAGATAGGTATTCACCTTCATTACACTATCTATTGCTGACGAATGAGGGGGAACCAAAGTCTTTTGATGAGGCCCTACAGGTGGCGGATTCGATCAAGTGGGAGCAAGCAATGGATGATGAGATGAGGTCACTTGAGAAGAATGACACATGGGTGTTGACTGAGTTATCTGCAGGGAAGAGAGCTTTGCTGAACAAGTTGGTGTTTAGAATCAAGATTGAACCAGATGGGAAAAGAAGGTTCAAGGCTC</gDNA_template>
            <first_frame> N  S  W  *  G  K  T  E  W  N  C  *  E  D  E  Q  N  I  E  *  V  C  K  D  Y  E  D  T  L  W  A  A  Q  N  T  L  G  G  C  C  E  H  S  C  I  L  D  Q  Q  E  T  I  S  S  F  R  V  H  D  T  R  G  G  V  D  R  K  R  T  Q  V  L  T  L  E  D  F  W  L  H  C  L  C  S  C  *  S  R  K  E  R  Q  A  *  C  Q  G  C  E  V  L  L  H  R  I  W  F  *  F  V  W  L  Q  V  L  G  *  Q  E  Q  K  D  P  E  T  L  *  R  D  I  *  *  V  C  P  V  Q  V  Q  S  A  K  G  S  R  D  Y  K  A  S  G  S  *  G  *  V  G  E  E  *  P  Q  R  C  R  S  R  Y  S  T  N  S  Y  *  R  I  *  S  G  A  S  Y  T  *  A  G  V  K  E  I  I  Q  I  H  Q  G  T  R  *  V  F  T  F  I  T  L  S  I  A  D  E  *  G  G  T  K  V  F  *  *  G  P  T  G  G  G  F  D  Q  V  G  A  S  N  G  *  *  D  E  V  T  *  E  E  *  H  M  G  V  D  *  V  I  C  R  E  E  S  F  A  E  Q  V  G  V  *  N  Q  D  *  T  R  W  E  K  K  V  Q  G   </first_frame>
            <second_frame>  I  H  G  K  A  R  Q  N  G  I  A  E  R  M  N  R  I  L  N  E  C  A  R  T  M  R  I  H  C  G  L  P  K  T  L  W  A  D  A  V  S  T  A  A  Y  L  I  N  R  R  P  S  V  P  L  G  F  T  I  P  E  E  V  W  T  G  K  E  L  K  Y  S  H  L  R  T  F  G  C  T  A  Y  V  H  V  D  L  E  K  R  D  K  L  D  A  K  A  V  K  C  Y  F  I  G  Y  G  S  D  L  F  G  Y  R  F  W  D  D  K  N  R  K  I  L  R  H  C  D  V  T  F  D  E  S  V  L  Y  K  Y  R  V  Q  K  V  L  E  T  T  K  Q  V  G  V  E  V  E  L  E  K  S  N  P  R  D  V  E  A  D  T  Q  P  T  P  T  E  E  S  E  V  E  Q  V  T  P  E  Q  V  L  R  R  S  S  R  S  I  R  A  P  D  R  Y  S  P  S  L  H  Y  L  L  L  T  N  E  G  E  P  K  S  F  D  E  A  L  Q  V  A  D  S  I  K  W  E  Q  A  M  D  D  E  M  R  S  L  E  K  N  D  T  W  V  L  T  E  L  S  A  G  K  R  A  L  L  N  K  L  V  F  R  I  K  I  E  P  D  G  K  R  R  F  K  A  </second_frame>
            <third_frame>   F  M  V  R  Q  D  R  M  E  L  L  R  G  *  T  E  Y  *  M  S  V  Q  G  L  *  G  Y  T  V  G  C  P  K  H  F  G  R  M  L  *  A  Q  L  H  T  *  S  T  G  D  H  Q  F  L  *  G  S  R  Y  Q  R  R  C  G  Q  E  K  N  S  S  T  H  T  *  G  L  L  V  A  L  L  M  F  M  L  I  *  K  R  E  T  S  L  M  P  R  L  *  S  V  T  S  *  D  M  V  L  I  C  L  V  T  G  F  G  M  T  R  T  E  R  S  *  D  I  V  T  *  H  L  M  S  L  S  C  T  S  T  E  C  K  R  F  *  R  L  Q  S  K  W  E  L  R  L  S  W  R  R  V  T  P  E  M  S  K  Q  I  L  N  Q  L  L  L  K  N  L  K  W  S  K  L  H  L  S  R  C  *  G  D  H  P  D  P  S  G  H  Q  I  G  I  H  L  H  Y  T  I  Y  C  *  R  M  R  G  N  Q  S  L  L  M  R  P  Y  R  W  R  I  R  S  S  G  S  K  Q  W  M  M  R  *  G  H  L  R  R  M  T  H  G  C  *  L  S  Y  L  Q  G  R  E  L  C  *  T  S  W  C  L  E  S  R  L  N  Q  M  G  K  E  G  S  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0061A10.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48253" stop="49089"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHGKARQNGIAERMNRILNECARTMRIHCGLPKTLWADAVSTAAYLINRRPSVPLGFTIPEEVWTGKELKYSHLRTFGCTAYVHVDLEKRDKLDAKAVKCYFIGYGSDLFGYRFWDDKNRKILRHCDVTFDESVLYKYRVQKVLETTKQVGVEVELEKSNPRDVEADTQPTPTEESEVEQVTPEQVLRRSSRSIRAPDRYSPSLHYLLLTNEGEPKSFDEALQVADSIKWEQAMDDEMRSLEKNDTWVLTELSAGKRALLNKLVFRIKIEPDGKRRFKA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="50210" PGL_stop="49993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50210" e_stop="49993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="50210" e_stop="49993" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50210" stop="49993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCTCGCTCTGCTTCTTGCCCAATTCCTCAAGATAATCTGCCAGCCATATCATCTCTTTCCCAGCTTCAGCTATTGCCACATACTTAGCTTCAGTAGATGAAAGAGAAACACACTTCTGAAGCCTGGACATCCAACTCACTTCTGTTCCACCTATGGTGTAAATGTACCCGGATGTACTCTTGCTCGAGTCAACATCCCCACCAAGATCAGCATCC</gDNA_template>
            <first_frame> S  S  R  S  A  S  C  P  I  P  Q  D  N  L  P  A  I  S  S  L  S  Q  L  Q  L  L  P  H  T  *  L  Q  *  M  K  E  K  H  T  S  E  A  W  T  S  N  S  L  L  F  H  L  W  C  K  C  T  R  M  Y  S  C  S  S  Q  H  P  H  Q  D  Q  H   </first_frame>
            <second_frame>  L  L  A  L  L  L  A  Q  F  L  K  I  I  C  Q  P  Y  H  L  F  P  S  F  S  Y  C  H  I  L  S  F  S  R  *  K  R  N  T  L  L  K  P  G  H  P  T  H  F  C  S  T  Y  G  V  N  V  P  G  C  T  L  A  R  V  N  I  P  T  K  I  S  I  </second_frame>
            <third_frame>   F  S  L  C  F  L  P  N  S  S  R  *  S  A  S  H  I  I  S  F  P  A  S  A  I  A  T  Y  L  A  S  V  D  E  R  E  T  H  F  *  S  L  D  I  Q  L  T  S  V  P  P  M  V  *  M  Y  P  D  V  L  L  L  E  S  T  S  P  P  R  S  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0061A10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="137798" PGL_stop="138391"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137798" e_stop="138391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="137798" e_stop="138391" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137798" stop="138391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603109" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGAAGCCAAAAAAGAGACTTTCCCTTCTAGTTTTGTTTACTTTTCTGCCAAACAATTCATATCTCTTTCCTCATTAGTGAAAAACACCACCTCCTTAACTCACATGTCCACTGAATTTGAGAAACATCAAAGAGTAAAAATAACCTTAACTTTCCTTTTTACAACTCTCCTAGCTTCAAACTCAAAATCCCTTTTAGTTTTATCTCCAATTATACTCTAAAAATGGAAGCTTTTCATCATCCCCCTATTAGCTTTCACTTTCCCTATGCTTTTCCTATCCCAACACCAACAACCAATTTTCTTGGAACTCCAAATTCATCATCAATTAATGGAATGATCATCAACACTTGGATGTATAGTAGAATTTGGAGTAGACTTCCACATAGGCTTATTGATAGAATCATTGCTTTTCTACCACCACCTGCTTTCTTTAGAGCTAGAGTTGTTTATAAGAGATTCTATGGACTTATTTACTCTACACATTTTCTTGAATTGTACTTGCAAGTTTCACCTAAGAGGAACTGGTTCATTTTCTTTAAACAAAAAGTACCAAGAAACAACATTTACAAGAACATGATGAATAGTAGTGACT</gDNA_template>
            <first_frame> R  E  A  K  K  E  T  F  P  S  S  F  V  Y  F  S  A  K  Q  F  I  S  L  S  S  L  V  K  N  T  T  S  L  T  H  M  S  T  E  F  E  K  H  Q  R  V  K  I  T  L  T  F  L  F  T  T  L  L  A  S  N  S  K  S  L  L  V  L  S  P  I  I  L  *  K  W  K  L  F  I  I  P  L  L  A  F  T  F  P  M  L  F  L  S  Q  H  Q  Q  P  I  F  L  E  L  Q  I  H  H  Q  L  M  E  *  S  S  T  L  G  C  I  V  E  F  G  V  D  F  H  I  G  L  L  I  E  S  L  L  F  Y  H  H  L  L  S  L  E  L  E  L  F  I  R  D  S  M  D  L  F  T  L  H  I  F  L  N  C  T  C  K  F  H  L  R  G  T  G  S  F  S  L  N  K  K  Y  Q  E  T  T  F  T  R  T  *  *  I  V  V  T </first_frame>
            <second_frame>  E  K  P  K  K  R  L  S  L  L  V  L  F  T  F  L  P  N  N  S  Y  L  F  P  H  *  *  K  T  P  P  P  *  L  T  C  P  L  N  L  R  N  I  K  E  *  K  *  P  *  L  S  F  L  Q  L  S  *  L  Q  T  Q  N  P  F  *  F  Y  L  Q  L  Y  S  K  N  G  S  F  S  S  S  P  Y  *  L  S  L  S  L  C  F  S  Y  P  N  T  N  N  Q  F  S  W  N  S  K  F  I  I  N  *  W  N  D  H  Q  H  L  D  V  *  *  N  L  E  *  T  S  T  *  A  Y  *  *  N  H  C  F  S  T  T  T  C  F  L  *  S  *  S  C  L  *  E  I  L  W  T  Y  L  L  Y  T  F  S  *  I  V  L  A  S  F  T  *  E  E  L  V  H  F  L  *  T  K  S  T  K  K  Q  H  L  Q  E  H  D  E  *  *  *   </second_frame>
            <third_frame>   R  S  Q  K  R  D  F  P  F  *  F  C  L  L  F  C  Q  T  I  H  I  S  F  L  I  S  E  K  H  H  L  L  N  S  H  V  H  *  I  *  E  T  S  K  S  K  N  N  L  N  F  P  F  Y  N  S  P  S  F  K  L  K  I  P  F  S  F  I  S  N  Y  T  L  K  M  E  A  F  H  H  P  P  I  S  F  H  F  P  Y  A  F  P  I  P  T  P  T  T  N  F  L  G  T  P  N  S  S  S  I  N  G  M  I  I  N  T  W  M  Y  S  R  I  W  S  R  L  P  H  R  L  I  D  R  I  I  A  F  L  P  P  P  A  F  F  R  A  R  V  V  Y  K  R  F  Y  G  L  I  Y  S  T  H  F  L  E  L  Y  L  Q  V  S  P  K  R  N  W  F  I  F  F  K  Q  K  V  P  R  N  N  I  Y  K  N  M  M  N  S  S  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0061A10.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137920" stop="138390"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETSKSKNNLNFPFYNSPSFKLKIPFSFISNYTLKMEAFHHPPISFHFPYAFPIPTPTTNFLGTPNSSSINGMIINTWMYSRIWSRLPHRLIDRIIAFLPPPAFFRARVVYKRFYGLIYSTHFLELYLQVSPKRNWFIFFKQKVPRNNIYKNMMNSSD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 59 chains have been computed
$ 
$ memory statistics:
$ 8672 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2168 bytes was the average size of a spliced alignment
$ 9056 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2264 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 71 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:25:59
-->
