<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:34:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745036" ref_strand="+" ref_description="SGN-E745036 [GI|82754255]">
      <seq>tctaaaaatgcggagctacgtcgttcggcagacggtaaaaagccagaactagaaggagacgttgggaaactccataaaacccatgacaatgtttgtttaaatgcagctacagcaagcacgtctacaacaaaaggagctagtggaataagatatacaaatttaaatatgaacaaaatcttcgataaaccatttattccaaagaaccaaaaagactcattatttataccaccgcaaatacatacttactcagaaagtttaaaacaagataaaaaagcctacaaccacataacccgctcatatattgaaaacctttataaaatccaaaattatttaaactcaacacctagatctccaactaccaaaaaccctaacactgattttataacccaaaagctacaagggatataataagttaatagcacaaccgggcaccaatgcaaatctagtaaaaacatgttatagttatggattacttaatacagtttatacccaaacaggagatgaaatatctaccataccagagctatacaaagcctttatgaactataaaagaattactaaaggaacattgttttatataaagttttattcagcaccagcagagatattatttgatgagataaaaccaattatacaagttataaaaattggtttgaccagagatatgataattccagaagatatcggaatacaacaagaaatacaaaagattgagataccagaattctacgccaacaaaagagttataggaatagcaactatcctaaataaactaactaacaattatttaaacggaaactcagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="557" stop="1962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="857" g_stop="1662" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="806" r_length="806" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E745036" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="857" e_stop="1662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAAAATGCGGAGCTATGTCGATCGGAAGACAGAAAAATTCCAGAGCTACAAGGAGACGTTGGGAAACTCCATAAAACCCATGACAATGTTTGTTTAAATGCAGCTACAGCCAGCACATCTACAACAAAAGGAGTCAGTGGAATAAGATATACAAATTTAAATATGAACAAAATCTTTGATAAACCATTTATTCCAAAGAACCAAAAAGACTCATTATTTATACCACCACAAATAACTACTTACTCAGAAAGTTTAAGCCAAGATAAAAAAAGCCTACAACCACAAAACTCGCTCATATATTGAAAACCTTTATAAAAATTCAAAATTATTTAAACTCAACACCTAGATCTCCAACTACCAAAGACCCTAATACTGATTTTATAACCCAAAAGCTACAA-GGATATAATAAGTTAATAGCACAATCAGGCACCAATGCAAATCTAGTAAAAACATGTTATAGTTATGGACTACTTAGCATAGTTTATACCCAAACAGGAGATGAAATATCTACCATACCGGAGCTATACAAAGCCTTTATGAACTATAAAAGAATTACCAAAGGAACATTATTTTATATAAAGTTTTATTCAGCACCAGCAGAGATATTATTTGATGAGATAAAACCAATTATACAAGTTATAAAGATTGGTTTGACCAGAGATATGATAATTCCAGAAGATATCGAAATGCAGCAAGAAATACAAAGGATTGAGATACCAGAATTTTACGCCAACAAAAGAGTTATAGGGATAGCAACTATCCT-AATGAACTAACTAACAATTATTTAAACGGAAATTCAGTAT</genome_strand>
        <mrna_strand>TCTAAAAATGCGGAGCTACGTCGTTCGGCAGACGGTAAAAAGCCAGAACTAGAAGGAGACGTTGGGAAACTCCATAAAACCCATGACAATGTTTGTTTAAATGCAGCTACAGCAAGCACGTCTACAACAAAAGGAGCTAGTGGAATAAGATATACAAATTTAAATATGAACAAAATCTTCGATAAACCATTTATTCCAAAGAACCAAAAAGACTCATTATTTATACCACCGCAAATACATACTTACTCAGAAAGTTTAAAACAAGAT-AAAAAAGCCTACAACCACATAACCCGCTCATATATTGAAAACCTTTAT-AAAATCCAAAATTATTTAAACTCAACACCTAGATCTCCAACTACCAAAAACCCTAACACTGATTTTATAACCCAAAAGCTACAAGGGATATAATAAGTTAATAGCACAACCGGGCACCAATGCAAATCTAGTAAAAACATGTTATAGTTATGGATTACTTAATACAGTTTATACCCAAACAGGAGATGAAATATCTACCATACCAGAGCTATACAAAGCCTTTATGAACTATAAAAGAATTACTAAAGGAACATTGTTTTATATAAAGTTTTATTCAGCACCAGCAGAGATATTATTTGATGAGATAAAACCAATTATACAAGTTATAAAAATTGGTTTGACCAGAGATATGATAATTCCAGAAGATATCGGAATACAACAAGAAATACAAAAGATTGAGATACCAGAATTCTACGCCAACAAAAGAGTTATAGGAATAGCAACTATCCTAAATAAACTAACTAACAATTATTTAAACGGAAACTCAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745037" ref_strand="+" ref_description="SGN-E745037 [GI|83833849]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcctagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="2130" stop="2872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2430" g_stop="2572" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E745037" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2430" e_stop="2572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATAATAATTGTTTATCATATTTTAATAATGTTCTAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAGGTATGCTCAGACTATGCCATCCTAAGGTTGAAACCGATAAGCA-AGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCTAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745038" ref_strand="+" ref_description="SGN-E745038 [GI|83833848]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="2130" stop="2872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2430" g_stop="2572" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E745038" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2430" e_stop="2572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATAATAATTGTTTATCATATTTTAATAATGTTCTAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAGGTATGCTCAGACTATGCCATCCTAAGGTTGAAACCGATAAGCA-AGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745039" ref_strand="+" ref_description="SGN-E745039 [GI|83833847]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="2130" stop="2872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2430" g_stop="2572" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E745039" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2430" e_stop="2572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATAATAATTGTTTATCATATTTTAATAATGTTCTAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAGGTATGCTCAGACTATGCCATCCTAAGGTTGAAACCGATAAGCA-AGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745041" ref_strand="+" ref_description="SGN-E745041 [GI|83833845]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="2130" stop="2872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2430" g_stop="2572" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E745041" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2430" e_stop="2572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATAATAATTGTTTATCATATTTTAATAATGTTCTAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAGGTATGCTCAGACTATGCCATCCTAAGGTTGAAACCGATAAGCA-AGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745037" ref_strand="+" ref_description="SGN-E745037 [GI|83833849]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcctagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="7365" stop="6623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7065" g_stop="6923" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E745037" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7065" e_stop="6923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTTTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTCTAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAGGTATGCTCAGACTATGTCATCCTAAGGTTGAAATCGATAGGCA-AGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCTAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745038" ref_strand="+" ref_description="SGN-E745038 [GI|83833848]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="7365" stop="6623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7065" g_stop="6923" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E745038" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7065" e_stop="6923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTTTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTCTAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAGGTATGCTCAGACTATGTCATCCTAAGGTTGAAATCGATAGGCA-AGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745039" ref_strand="+" ref_description="SGN-E745039 [GI|83833847]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="7365" stop="6623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7065" g_stop="6923" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E745039" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7065" e_stop="6923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTTTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTCTAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAGGTATGCTCAGACTATGTCATCCTAAGGTTGAAATCGATAGGCA-AGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745041" ref_strand="+" ref_description="SGN-E745041 [GI|83833845]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="7365" stop="6623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7065" g_stop="6923" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E745041" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7065" e_stop="6923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTTTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTCTAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAGGTATGCTCAGACTATGTCATCCTAAGGTTGAAATCGATAGGCA-AGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="16368" stop="15397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16068" g_stop="15645" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16068" e_stop="15645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAACCCTTCGACGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCAGAAAAC-AAGTACCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACTAATTTCGCAACTACTGTTCACGACAGCAAAACTGAAGCTGCAGGTCACCAAATTCAACTCTGTCAGTTCCTAATCAAACATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGCTGTTAGGGCT-GAATTTTGACTGCGAA-AACTGCCCTCTTTCTCTCTTTTTGGCTGCTGAAAAAAACTCTCTGTGTATAT</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTC-TTTTAGCTGCTGAAAAACTCTCTCTG-AAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297083" ref_strand="+" ref_description="SGN-E297083 [cLEW-2-E20]">
      <seq>aactattaattattactctttgctggcctctttcttcttttaccttttgtcatctctagggtttcagacaaagcagccaaatatattttttatatatatatatatataaacaacaaactacatctcttacttacaccaactactctacttttgcttttattttttatgagagaatgataaaaggtatgctaggagatgatagtatgtcaaatttaacaagtgcatctaatgaagcaagcatatcttcaaccaacaatagaattgaaattggtagtcatgttctctacccacaactacaaaacattcaaacccaaccacctcctaacaagaagaagagaaatctaccaggaaatccagatccagaagcagaagttgtagcattatctccaagaagtctattggcaaccaatagatttgtatgtgagatatgtaacaaaggatttcaaagagatcaaaatcttcaactacatagaagaggacataatttgccctggaaagtaaagcaaagaagcaataaagaagtgaagaagaaagtatatgtgtgtccagaagcatcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="19368" stop="20734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19668" g_stop="20024" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20025" i_stop="20231" i_length="207">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20232" g_stop="20434" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="560" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E297083" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19668" e_stop="20024"/>
          <exon e_start="20232" e_stop="20434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATTAATTATTACTCTTTGCTTTCCTCTTTCTTCTTTTACCTTTTGTCATCTCTAGGGTTTCAGACAAAGCAGCCAAATATATTTTTTATATATATATATATATAAACAACAAACTACATCTCTTACTTACACCAACTACTCTACTTTTGCTTTTATTTTTTATGAGAGAATGATAAAAGGTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAGGTAACTATATACTATTAATTACTCGGCGTCGCACAGTTGAAATTTCAAGAGTCAACTATATGTTGTTCCTTCATCATAATCTTTTTTATATGTCTTTTAAATATTTTTAGTGGTTGATTATTGTCAACTATATCTGAATCTTGAAATTTCAATTATGGGACATAAAGAATATAGAGTATAATTAATGAATTTTTGATGATGTATTAGATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGT</genome_strand>
        <mrna_strand>AACTATTAATTATTACTCTTTGCTGGCCTCTTTCTTCTTTTACCTTTTGTCATCTCTAGGGTTTCAGACAAAGCAGCCAAATATATTTTTTATATATATATATATATAAACAACAAACTACATCTCTTACTTACACCAACTACTCTACTTTTGCTTTTATTTTTTATGAGAGAATGATAAAAGGTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAG...............................................................................................................................................................................................................ATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAAGTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206232" ref_strand="+" ref_description="SGN-E206232 [cLEC-29-F4]">
      <seq>agaactactctacttttgcttttattttttatgagagaatgataaaaggtatgctaggagatgatagtatgtcaaatttaacgggtgcatctaatgaggcgagcatatcttcaagcagcaatagaattgaaattggtagacatgttctctacccacaactacaaaacatccaaacccaaccacctcctaacaagaagaagagaaatctaccacgaaatccagatccagaagcagaagttgaagcattatctccaagaagtctattggcaaccaatacatttgcatgtgagatatgtaacaaaggattccaaagagatcaaaatcttcaactacatagaagaggacataatttgccctggaaattaaagcaaagaagcaataaagaagtgaacaataaagtatatgtgtgtccagaagcatcatgtgtacatcatcatccatcaagagccttatgggatctgactgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="19505" stop="20778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19803" g_stop="20024" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20025" i_stop="20231" i_length="207">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20232" g_stop="20478" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="469" r_length="247" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E206232" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19803" e_stop="20024"/>
          <exon e_start="20232" e_stop="20478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTACTCTACTTTTGCTTTTATTTTTTATGAGAGAATGATAAAAGGTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAGGTAACTATATACTATTAATTACTCGGCGTCGCACAGTTGAAATTTCAAGAGTCAACTATATGTTGTTCCTTCATCATAATCTTTTTTATATGTCTTTTAAATATTTTTAGTGGTTGATTATTGTCAACTATATCTGAATCTTGAAATTTCAATTATGGGACATAAAGAATATAGAGTATAATTAATGAATTTTTGATGATGTATTAGATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGTGTACATCATCATCCATCAAGAGCCTTAGGGGATCTGACTGGGAT</genome_strand>
        <mrna_strand>AGAACTACTCTACTTTTGCTTTTATTTTTTATGAGAGAATGATAAAAGGTATGCTAGGAGATGATAGTATGTCAAATTTAACGGGTGCATCTAATGAGGCGAGCATATCTTCAAGCAGCAATAGAATTGAAATTGGTAGACATGTTCTCTACCCACAACTACAAAACATCCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCACGAAATCCAG...............................................................................................................................................................................................................ATCCAGAAGCAGAAGTTGAAGCATTATCTCCAAGAAGTCTATTGGCAACCAATACATTTGCATGTGAGATATGTAACAAAGGATTCCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAACAATAAAGTATATGTGTGTCCAGAAGCATCATGTGTACATCATCATCCATCAAGAGCCTTATGGGATCTGACTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392212" ref_strand="+" ref_description="SGN-E392212 [TUS-36-A24]">
      <seq>attttttatgagagaatgataaaaggtatgctaggagatgatagtatgtcaaatttaacaagtgcatctaatgaagcaagcatatcttcaaccaacaatagaattgaaattggtagtcatgttctctacccacaactacaaaacattcaaacccaaccacctcctaacaaaaagaagagaaatctaccaggaaatccagatccagaagcagaagttgtagcattatctccaagaagtctattggcaaccaatagatttgtatgtgagatatgtaacaaaggatttcaaagagatcaaaatcttcaactacatagaagaggacataatttgccctggaaattaaagcaaaaaaacaataaagaagtgaagaagaaagtatatgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="19526" stop="20718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19826" g_stop="20024" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20025" i_stop="20231" i_length="207">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20232" g_stop="20418" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="386" r_length="187" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E392212" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19826" e_stop="20024"/>
          <exon e_start="20232" e_stop="20418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTATGAGAGAATGATAAAAGGTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAGGTAACTATATACTATTAATTACTCGGCGTCGCACAGTTGAAATTTCAAGAGTCAACTATATGTTGTTCCTTCATCATAATCTTTTTTATATGTCTTTTAAATATTTTTAGTGGTTGATTATTGTCAACTATATCTGAATCTTGAAATTTCAATTATGGGACATAAAGAATATAGAGTATAATTAATGAATTTTTGATGATGTATTAGATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTG</genome_strand>
        <mrna_strand>ATTTTTTATGAGAGAATGATAAAAGGTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAAAAGAAGAGAAATCTACCAGGAAATCCAG...............................................................................................................................................................................................................ATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAAAAACAATAAAGAAGTGAAGAAGAAAGTATATGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205194" ref_strand="+" ref_description="SGN-E205194 [cLEC-16-D4]">
      <seq>ttttttatgagagaatgataaaaggtatgctaggagatgatagtatgtcaaatttaacaagtgcatctaatgaagcaagcatatcttcaaccaacaatagaattgaaattggtagtcatgttctctacccacaactacaaaacattcaaacccaaccacctcctaacaagaagaagagaaatctaccaggaaatccagatccagaagcagaagttgtagcattatctccaagaagtctattggcaaccaatagatttgtatgtgagatatgtaacaaaggatttcaaagagatcaaaatcttcaactacatagaagaggacataatttgccctggaaattaaagcaaagaagcaataaagaagtgaagaagaaagtatatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="19527" stop="20716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19827" g_stop="20024" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20025" i_stop="20231" i_length="207">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20232" g_stop="20416" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="383" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E205194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19827" e_stop="20024"/>
          <exon e_start="20232" e_stop="20416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTATGAGAGAATGATAAAAGGTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAGGTAACTATATACTATTAATTACTCGGCGTCGCACAGTTGAAATTTCAAGAGTCAACTATATGTTGTTCCTTCATCATAATCTTTTTTATATGTCTTTTAAATATTTTTAGTGGTTGATTATTGTCAACTATATCTGAATCTTGAAATTTCAATTATGGGACATAAAGAATATAGAGTATAATTAATGAATTTTTGATGATGTATTAGATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTG</genome_strand>
        <mrna_strand>TTTTTTATGAGAGAATGATAAAAGGTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAG...............................................................................................................................................................................................................ATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406926" ref_strand="+" ref_description="SGN-E406926 [PPI-5-O20]">
      <seq>gagagagagaactacccttttatttttattttttattttttttcaagtttatgagagaatgataaagggtatgctaggagatgatagtatgtcaaatttaacaagtgcatctaacgaagcaagcatatcttcaaccaataatagaattgaaattggtagtgttctctacccacaactacaaaacattcaaacccaaccacctcctaacaagaagaagagaaatctaccaggaaatccagatccagaagcagaagttgtagcattatctccaagaagtctattggcaacaaatagatttgtatgtgagatctgtaacaaaggatttcaaagagatcaaaatcttcaactacatagaagaggacataatttgccatggaaattaaagcaaagaacaaataaagaggtgaagaagaaagtatatgtgtgtccagaaccatcatgtgtacatcatcatccatcaagagcattaggggatctcactgggattaagaagcatttttgtagaaaacatggtgagaaaaaatggaaatgtgaaaaatgttcaaaacgttatgcagttcaatctgattggaaagctcactctaagatttgtggtacaagagagtatagatgtgattgtggaacccttttctctaggagggatagtttcattacacacagagccttttgtgatgctttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="19530" stop="22062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19830" g_stop="20024" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="239" r_length="192" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20025" i_stop="20231" i_length="207">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20232" g_stop="20628" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="636" r_length="397" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20629" i_stop="21717" i_length="1089">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21718" g_stop="21762" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="681" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="43" polyA_stop="29"/>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E406926" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19830" e_stop="20024"/>
          <exon e_start="20232" e_stop="20628"/>
          <exon e_start="21718" e_stop="21762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGAGAGAATGATAAAAGGTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAGGTAACTATATACTATTAATTACTCGGCGTCGCACAGTTGAAATTTCAAGAGTCAACTATATGTTGTTCCTTCATCATAATCTTTTTTATATGTCTTTTAAATATTTTTAGTGGTTGATTATTGTCAACTATATCTGAATCTTGAAATTTCAATTATGGGACATAAAGAATATAGAGTATAATTAATGAATTTTTGATGATGTATTAGATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGTGTACATCATCATCCATCAAGAGCCTTAGGGGATCTGACTGGGATTAAGAAGCATTTCTGTAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAATGTTCAAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCTAGGTATATATTCTCTCATCTATGCATGTCTATGTTAATTGTTTTTCAAATTTTGAATTGATTAAAATTATTATTTCCAACTTTTAATCATTATCTTTTTCAGATGATATTATAATTTACTCAACTCAATAGTTTTAGCTTATTTGTCTTAAGCATCCATGTGCTCCTTTAAATAATATCTATGAAGAACCCAATTTACCTGCATTGTATGATTTTTTGCACACAAGTTTTTTAAAAGAAGAAGAATTTTGAAATGTGTGGTATAAATAAATTTTAAATGTTTATGTGATTATAAATAATTTTAGTAAAAGTAAAAATGAAATTTTAAGGTGGCCATATTATTTCTAATTATAAAAAAAAAGTGATATTTTTTTATATGTAAAAGTACTTCTACATTACATTCTCCTTATTAGCATATAGATATATCTACAATCCTTCTTTAATAAAAAAATATCACACATGTATTAGAATTTACATAAGTAATAGTACCATGCTTGTTGTTGGTTTAGTTAGGATTATATATAAAATTAACAGACGATTTGGTTTGCAATTTATAAACCTGCATAATTAAGTGATATAGTATAAGTTAATTAATTACGAGGAAATTTATGTATAATTTTATGCAAAATAAAATGATTAATACATAAATAACTGATCTGTATATAACGTACATTTCTGCATAACTAATTCATTTTTAACTAATTAATATCTACTTTAACTCTAGCGAGCTATTTTGAATCAAAACTACCTAAAAGACATCAAGCAATTAGCAAAGTTCACGTGTGTAAGTTCATGTGTACAACTGAATAAATGAGTTTGTCCATTTGTGTGTCTGTATGTGAGAGTGATAATTGAGGGTCCACACCTTGCTGCAAAAGCAATTTGCATACAAAAACTTTACTGCAGATTCGTATTTTACTACTAAAACTAATAATAATAATAATTGTGATGTCTCTAAAGCTAGAAGAGATAAAAGTGAAAGAAAGAAAAACACAAAAAAAGAGAGCAGTACTCATGCACTTTTTATTAGTAGTAGTACTCTTAATATTCATTCAACAATTCTTCATGTGTGATACTTTTGTTTTTACACAGGAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAAC</genome_strand>
        <mrna_strand>TTTATGAGAGAATGATAAAGGGTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAACGAAGCAAGCATATCTTCAACCAATAATAGAATTGAAATTGGTAG---TGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAG...............................................................................................................................................................................................................ATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACAAATAGATTTGTATGTGAGATCTGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCATGGAAATTAAAGCAAAGAACAAATAAAGAGGTGAAGAAGAAAGTATATGTGTGTCCAGAACCATCATGTGTACATCATCATCCATCAAGAGCATTAGGGGATCTCACTGGGATTAAGAAGCATTTTTGTAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAATGTTCAAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264580" ref_strand="+" ref_description="SGN-E264580 [cLEG-67-H6]">
      <seq>gtatgctaggagatgatagtatgtcaaatttaacaagtgcatctaatgaagcaagcatatcttcaaccaacaatagaattgaaattggtagtcatgttctctacccacaactacaaaacattcaaacccaaccacctcctaacaagaagaagagaaatctaccaggaaatccagatccagaagcagaagttgtagcattatctccaagaagtctattggcaaccaatagatttgtatgtgagatatgtaacaaaggatttcaaagagatcaaaatcttcaactacatagaagaggacataatttgccctggaaattaaagcaaagaagcaataaagaagtgaagaagaaagtatatgtgtgtccagaagcatcatgtgtacatcatcatccatcaagagccttaggggatctgactgggattaagaagcatttctgtagaaaacatggtgagaaaaaatggaaatgtgaaaaatgttcaaaacgttatgcagttcaatctgattggaaagctcactctaagatttgtggtacaaagaagtatagatgttgattgtggaacccttttctctaggagggatagtttcattacacacagaagccttttgtgatgctttaacagaagaaagtttcagaacnataatcccaccaccaaattcttcaacttctcatcatcttaatcttcatacacttcaaaactttcaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="19551" stop="22151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19851" g_stop="20024" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20025" i_stop="20231" i_length="207">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20232" g_stop="20628" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="572" r_length="398" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20629" i_stop="21717" i_length="1089">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21718" g_stop="21851" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="707" r_length="135" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E264580" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19851" e_stop="20024"/>
          <exon e_start="20232" e_stop="20628"/>
          <exon e_start="21718" e_stop="21851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAGGTAACTATATACTATTAATTACTCGGCGTCGCACAGTTGAAATTTCAAGAGTCAACTATATGTTGTTCCTTCATCATAATCTTTTTTATATGTCTTTTAAATATTTTTAGTGGTTGATTATTGTCAACTATATCTGAATCTTGAAATTTCAATTATGGGACATAAAGAATATAGAGTATAATTAATGAATTTTTGATGATGTATTAGATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGTGTACATCATCATCCATCAAGAGCCTTAGGGGATCTGACTGGGATTAAGAAGCATTTCTGTAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAATGTTCAAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACAAGAGAGTATAGATG-TGATTGTGGAACCCTTTTCTCTAGGTATATATTCTCTCATCTATGCATGTCTATGTTAATTGTTTTTCAAATTTTGAATTGATTAAAATTATTATTTCCAACTTTTAATCATTATCTTTTTCAGATGATATTATAATTTACTCAACTCAATAGTTTTAGCTTATTTGTCTTAAGCATCCATGTGCTCCTTTAAATAATATCTATGAAGAACCCAATTTACCTGCATTGTATGATTTTTTGCACACAAGTTTTTTAAAAGAAGAAGAATTTTGAAATGTGTGGTATAAATAAATTTTAAATGTTTATGTGATTATAAATAATTTTAGTAAAAGTAAAAATGAAATTTTAAGGTGGCCATATTATTTCTAATTATAAAAAAAAAGTGATATTTTTTTATATGTAAAAGTACTTCTACATTACATTCTCCTTATTAGCATATAGATATATCTACAATCCTTCTTTAATAAAAAAATATCACACATGTATTAGAATTTACATAAGTAATAGTACCATGCTTGTTGTTGGTTTAGTTAGGATTATATATAAAATTAACAGACGATTTGGTTTGCAATTTATAAACCTGCATAATTAAGTGATATAGTATAAGTTAATTAATTACGAGGAAATTTATGTATAATTTTATGCAAAATAAAATGATTAATACATAAATAACTGATCTGTATATAACGTACATTTCTGCATAACTAATTCATTTTTAACTAATTAATATCTACTTTAACTCTAGCGAGCTATTTTGAATCAAAACTACCTAAAAGACATCAAGCAATTAGCAAAGTTCACGTGTGTAAGTTCATGTGTACAACTGAATAAATGAGTTTGTCCATTTGTGTGTCTGTATGTGAGAGTGATAATTGAGGGTCCACACCTTGCTGCAAAAGCAATTTGCATACAAAAACTTTACTGCAGATTCGTATTTTACTACTAAAACTAATAATAATAATAATTGTGATGTCTCTAAAGCTAGAAGAGATAAAAGTGAAAGAAAGAAAAACACAAAAAAAGAGAGCAGTACTCATGCACTTTTTATTAGTAGTAGTACTCTTAATATTCATTCAACAATTCTTCATGTGTGATACTTTTGTTTTTACACAGGAGGGATAGTTTCATTACACACAG-AGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAACAATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATACACTTCAAAACTTCCAAATGA</genome_strand>
        <mrna_strand>GTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAG...............................................................................................................................................................................................................ATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGTGTACATCATCATCCATCAAGAGCCTTAGGGGATCTGACTGGGATTAAGAAGCATTTCTGTAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAATGTTCAAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACAAAGAAGTATAGATGTTGATTGTGGAACCCTTTTCTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGATAGTTTCATTACACACAGAAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTTCAGAACNATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATACACTTCAAAACTTTCAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253829" ref_strand="+" ref_description="SGN-E253829 [cLEG-28-O18]">
      <seq>gtatgctaggagatgatagtatgtcaaatttaacaagtgcatctaatgaagcaagcatatcttcaaccaacaatagaattgaaattggtagtcatgttctctacccacaactacaaaacattcaaacccaaccacctcctaacaagaagaagagaaatctaccaggaaatccagatccagaagcagaagttgtagcattatctccaagaagtctattggcaaccaatagatttgtatgtgagatatgtaacaaaggatttcaaagagatcaaaatcttcaactacatagaagaggacataatttgccctggaaattaaagcaaagaagcaataaagaagtgaagaagaaagtatatgtgtgtccagaagcatcatgtgtacatcatcatccatcaagagccttaggggatctgactgggattaagaagcatttctgtagaaaacatggtgagaaaaaatggaaatgtgaaaaatgttcaaaacgttatgcagttcaatctgattggaaagctcactctaagatttgtggtacaagagagtatagatgtgattgtggaacccttttctctaggagggatagtttcattacacacagagccttttgtgatgctttaacagaagaaagttcaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="19551" stop="22079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19851" g_stop="20024" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20025" i_stop="20231" i_length="207">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20232" g_stop="20628" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="571" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20629" i_stop="21717" i_length="1089">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21718" g_stop="21779" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="633" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E253829" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19851" e_stop="20024"/>
          <exon e_start="20232" e_stop="20628"/>
          <exon e_start="21718" e_stop="21779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAGGTAACTATATACTATTAATTACTCGGCGTCGCACAGTTGAAATTTCAAGAGTCAACTATATGTTGTTCCTTCATCATAATCTTTTTTATATGTCTTTTAAATATTTTTAGTGGTTGATTATTGTCAACTATATCTGAATCTTGAAATTTCAATTATGGGACATAAAGAATATAGAGTATAATTAATGAATTTTTGATGATGTATTAGATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGTGTACATCATCATCCATCAAGAGCCTTAGGGGATCTGACTGGGATTAAGAAGCATTTCTGTAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAATGTTCAAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCTAGGTATATATTCTCTCATCTATGCATGTCTATGTTAATTGTTTTTCAAATTTTGAATTGATTAAAATTATTATTTCCAACTTTTAATCATTATCTTTTTCAGATGATATTATAATTTACTCAACTCAATAGTTTTAGCTTATTTGTCTTAAGCATCCATGTGCTCCTTTAAATAATATCTATGAAGAACCCAATTTACCTGCATTGTATGATTTTTTGCACACAAGTTTTTTAAAAGAAGAAGAATTTTGAAATGTGTGGTATAAATAAATTTTAAATGTTTATGTGATTATAAATAATTTTAGTAAAAGTAAAAATGAAATTTTAAGGTGGCCATATTATTTCTAATTATAAAAAAAAAGTGATATTTTTTTATATGTAAAAGTACTTCTACATTACATTCTCCTTATTAGCATATAGATATATCTACAATCCTTCTTTAATAAAAAAATATCACACATGTATTAGAATTTACATAAGTAATAGTACCATGCTTGTTGTTGGTTTAGTTAGGATTATATATAAAATTAACAGACGATTTGGTTTGCAATTTATAAACCTGCATAATTAAGTGATATAGTATAAGTTAATTAATTACGAGGAAATTTATGTATAATTTTATGCAAAATAAAATGATTAATACATAAATAACTGATCTGTATATAACGTACATTTCTGCATAACTAATTCATTTTTAACTAATTAATATCTACTTTAACTCTAGCGAGCTATTTTGAATCAAAACTACCTAAAAGACATCAAGCAATTAGCAAAGTTCACGTGTGTAAGTTCATGTGTACAACTGAATAAATGAGTTTGTCCATTTGTGTGTCTGTATGTGAGAGTGATAATTGAGGGTCCACACCTTGCTGCAAAAGCAATTTGCATACAAAAACTTTACTGCAGATTCGTATTTTACTACTAAAACTAATAATAATAATAATTGTGATGTCTCTAAAGCTAGAAGAGATAAAAGTGAAAGAAAGAAAAACACAAAAAAAGAGAGCAGTACTCATGCACTTTTTATTAGTAGTAGTACTCTTAATATTCATTCAACAATTCTTCATGTGTGATACTTTTGTTTTTACACAGGAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAA</genome_strand>
        <mrna_strand>GTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAG...............................................................................................................................................................................................................ATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGTGTACATCATCATCCATCAAGAGCCTTAGGGGATCTGACTGGGATTAAGAAGCATTTCTGTAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAATGTTCAAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454936" ref_strand="+" ref_description="SGN-E454936 [cSTS-24-H8]">
      <seq>ttcaaccaataatagaattgaaattggtagtgttctctacccacaactacaaaacatcaaaacccaaccacctcctaacaagaagaagagaaatctaccaggaaatccagatccagaagcagaagttgtagcattatctccaagaagtcttttggcaacaaatagatttgtatgtgagatctgtaacaaaggatttcaaagagatcaaaatcttcaactacatagaagaaggacataatttgccatggaaattaaagcaaagaacaaataaagaggtgaagaagaaagtatatgtgtgtccagaaccatcatgtgtacatcatcatccatcaagagcattaggggatctcactgggattaagaagcatttttgtagaaaacatggtgagaaaaaatggaaatgtgaaaaatgttcaaaacgttatgcagttcaatctgattggaaagctcactctaagatttgtggtacaagagagtatagatgtgattgtggaacccttttctccaggagggatagtttcattacacacagagccttttgtgatgctttaacagaagaaagttcaagaacaataatcccaccaccaaattcttcaacttctcatcatcttaatcttcatacacttcaaaacttccaaatgaaacaagaacaacaacaaagtaacgatctctcttctcagttattcattcaaaaccctaatagcagtaaccatattcggtgcaccacctcctcacatgagcgcaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="19612" stop="22266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19912" g_stop="20024" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20025" i_stop="20231" i_length="207">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20232" g_stop="20628" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="508" r_length="398" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20629" i_stop="21717" i_length="1089">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21718" g_stop="21966" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="749" r_length="241" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E454936" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19912" e_stop="20024"/>
          <exon e_start="20232" e_stop="20628"/>
          <exon e_start="21718" e_stop="21966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAGGTAACTATATACTATTAATTACTCGGCGTCGCACAGTTGAAATTTCAAGAGTCAACTATATGTTGTTCCTTCATCATAATCTTTTTTATATGTCTTTTAAATATTTTTAGTGGTTGATTATTGTCAACTATATCTGAATCTTGAAATTTCAATTATGGGACATAAAGAATATAGAGTATAATTAATGAATTTTTGATGATGTATTAGATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAG-AGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGTGTACATCATCATCCATCAAGAGCCTTAGGGGATCTGACTGGGATTAAGAAGCATTTCTGTAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAATGTTCAAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCTAGGTATATATTCTCTCATCTATGCATGTCTATGTTAATTGTTTTTCAAATTTTGAATTGATTAAAATTATTATTTCCAACTTTTAATCATTATCTTTTTCAGATGATATTATAATTTACTCAACTCAATAGTTTTAGCTTATTTGTCTTAAGCATCCATGTGCTCCTTTAAATAATATCTATGAAGAACCCAATTTACCTGCATTGTATGATTTTTTGCACACAAGTTTTTTAAAAGAAGAAGAATTTTGAAATGTGTGGTATAAATAAATTTTAAATGTTTATGTGATTATAAATAATTTTAGTAAAAGTAAAAATGAAATTTTAAGGTGGCCATATTATTTCTAATTATAAAAAAAAAGTGATATTTTTTTATATGTAAAAGTACTTCTACATTACATTCTCCTTATTAGCATATAGATATATCTACAATCCTTCTTTAATAAAAAAATATCACACATGTATTAGAATTTACATAAGTAATAGTACCATGCTTGTTGTTGGTTTAGTTAGGATTATATATAAAATTAACAGACGATTTGGTTTGCAATTTATAAACCTGCATAATTAAGTGATATAGTATAAGTTAATTAATTACGAGGAAATTTATGTATAATTTTATGCAAAATAAAATGATTAATACATAAATAACTGATCTGTATATAACGTACATTTCTGCATAACTAATTCATTTTTAACTAATTAATATCTACTTTAACTCTAGCGAGCTATTTTGAATCAAAACTACCTAAAAGACATCAAGCAATTAGCAAAGTTCACGTGTGTAAGTTCATGTGTACAACTGAATAAATGAGTTTGTCCATTTGTGTGTCTGTATGTGAGAGTGATAATTGAGGGTCCACACCTTGCTGCAAAAGCAATTTGCATACAAAAACTTTACTGCAGATTCGTATTTTACTACTAAAACTAATAATAATAATAATTGTGATGTCTCTAAAGCTAGAAGAGATAAAAGTGAAAGAAAGAAAAACACAAAAAAAGAGAGCAGTACTCATGCACTTTTTATTAGTAGTAGTACTCTTAATATTCATTCAACAATTCTTCATGTGTGATACTTTTGTTTTTACACAGGAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAACAATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATACACTTCAAAACTTCCAAATGAAACAAGAACAGCAACAACAAAATAACGACCTCTCCTCTCAGTTATTCATTCAAAACCCTAATGGCAATAGTAGTAACATGTTCGGTGCACCACCTCCTCATATGAGCGCAACTGC</genome_strand>
        <mrna_strand>TTCAACCAATAATAGAATTGAAATTGGTAG---TGTTCTCTACCCACAACTACAAAACATCAAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAG...............................................................................................................................................................................................................ATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTTTTGGCAACAAATAGATTTGTATGTGAGATCTGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAAGGACATAATTTGCCATGGAAATTAAAGCAAAGAACAAATAAAGAGGTGAAGAAGAAAGTATATGTGTGTCCAGAACCATCATGTGTACATCATCATCCATCAAGAGCATTAGGGGATCTCACTGGGATTAAGAAGCATTTTTGTAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAATGTTCAAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAACAATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATACACTTCAAAACTTCCAAATGAAACAAG-A-A-CAACAACAAAGTAACGATCTCTCTTCTCAGTTATTCATTCAAAACCCTAATAGC---AGTA--ACCATATTCGGTGCACCACCTCCTCACATGAGCGCAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281648" ref_strand="+" ref_description="SGN-E281648 [cLER-14-D7]">
      <seq>tcaaagagatcaaaatcttcaactacatagaagaggacataatttgccctggaaattaaagcaaagaagcaataaagaagtgaagaagaaagtatatgtgtgtccagaagcatcatgtgtacatcatcatccatcaagagccttaggggatctgactgggattaagaagcatttctgtagaaaacatggtgagaaaaaatggaaatgtgaaaaatgttcaaaacgttatgcagttcaatctgattggaaagctcactctaagatttgtggtacaagagagtatagatgtgattgtggaacccttttctctaggagggatagtttcattacacacagagccttttgtgatgctttaacagaagaaagttcaagaacaataatcccaccaccaaattcttcaacttctcatcatcttaatcttcatacacgtcaatatcatccatttgaaaataataataataataataatactactgcaccttctttgccatgtactagttttgatgaaggatttggtcgcggcgcgcatttgatgagacaaggtaaagaaaataatgaagggttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="20017" stop="22656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20317" g_stop="20628" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20629" i_stop="21717" i_length="1089">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21718" g_stop="21830" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="425" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21831" i_stop="22109" i_length="279">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22110" g_stop="22155" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="471" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22156" i_stop="22260" i_length="105">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22261" g_stop="22356" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="567" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E281648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20317" e_stop="20628"/>
          <exon e_start="21718" e_stop="21830"/>
          <exon e_start="22110" e_stop="22155"/>
          <exon e_start="22261" e_stop="22356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGTGTACATCATCATCCATCAAGAGCCTTAGGGGATCTGACTGGGATTAAGAAGCATTTCTGTAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAATGTTCAAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCTAGGTATATATTCTCTCATCTATGCATGTCTATGTTAATTGTTTTTCAAATTTTGAATTGATTAAAATTATTATTTCCAACTTTTAATCATTATCTTTTTCAGATGATATTATAATTTACTCAACTCAATAGTTTTAGCTTATTTGTCTTAAGCATCCATGTGCTCCTTTAAATAATATCTATGAAGAACCCAATTTACCTGCATTGTATGATTTTTTGCACACAAGTTTTTTAAAAGAAGAAGAATTTTGAAATGTGTGGTATAAATAAATTTTAAATGTTTATGTGATTATAAATAATTTTAGTAAAAGTAAAAATGAAATTTTAAGGTGGCCATATTATTTCTAATTATAAAAAAAAAGTGATATTTTTTTATATGTAAAAGTACTTCTACATTACATTCTCCTTATTAGCATATAGATATATCTACAATCCTTCTTTAATAAAAAAATATCACACATGTATTAGAATTTACATAAGTAATAGTACCATGCTTGTTGTTGGTTTAGTTAGGATTATATATAAAATTAACAGACGATTTGGTTTGCAATTTATAAACCTGCATAATTAAGTGATATAGTATAAGTTAATTAATTACGAGGAAATTTATGTATAATTTTATGCAAAATAAAATGATTAATACATAAATAACTGATCTGTATATAACGTACATTTCTGCATAACTAATTCATTTTTAACTAATTAATATCTACTTTAACTCTAGCGAGCTATTTTGAATCAAAACTACCTAAAAGACATCAAGCAATTAGCAAAGTTCACGTGTGTAAGTTCATGTGTACAACTGAATAAATGAGTTTGTCCATTTGTGTGTCTGTATGTGAGAGTGATAATTGAGGGTCCACACCTTGCTGCAAAAGCAATTTGCATACAAAAACTTTACTGCAGATTCGTATTTTACTACTAAAACTAATAATAATAATAATTGTGATGTCTCTAAAGCTAGAAGAGATAAAAGTGAAAGAAAGAAAAACACAAAAAAAGAGAGCAGTACTCATGCACTTTTTATTAGTAGTAGTACTCTTAATATTCATTCAACAATTCTTCATGTGTGATACTTTTGTTTTTACACAGGAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAACAATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATACACTTCAAAACTTCCAAATGAAACAAGAACAGCAACAACAAAATAACGACCTCTCCTCTCAGTTATTCATTCAAAACCCTAATGGCAATAGTAGTAACATGTTCGGTGCACCACCTCCTCATATGAGCGCAACTGCATTGCTACAAAAAGCAGCACAAATTGGAGTAACTTCTTCTTCTCATACTGCTAATAACATGAGCGCCACAACTTTTTTCAGTCCTACTACCAGTACAACAACTGGCATTGCAATGTCAGGATCAGGATCAGGAGCAGGAGTAGCACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATACAAACACTGATTTTGTTACTGGTAATACGTCTTTTCCTGATTTTGGTGCGAGTGTCACCCCTGGGTTCATGGAACAAGTCCATGACATGCAAAACATGATGGCTACTACTGCACCTTCTTTGCCATGTACTAGTTTTGATGAAGGATTTGGTCGCGGCGCGCATTTGATGAGACAAGGTAAAGAAAATAATGAAGGGTTGAC</genome_strand>
        <mrna_strand>TCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGTGTACATCATCATCCATCAAGAGCCTTAGGGGATCTGACTGGGATTAAGAAGCATTTCTGTAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAATGTTCAAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAACAATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATA.......................................................................................................................................................................................................................................................................................CACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATAC.........................................................................................................TACTGCACCTTCTTTGCCATGTACTAGTTTTGATGAAGGATTTGGTCGCGGCGCGCATTTGATGAGACAAGGTAAAGAAAATAATGAAGGGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204436" ref_strand="+" ref_description="SGN-E204436 [cLEC-13-L10]">
      <seq>ggaacccttttctctaggagggatagtttcattacacacagagccttttgtgatgctttaacagaagaaagttcaagaacaataatcccaccaccaaattcttcaacttctcatcatcttaatcttcatacacttcaaaacttccaaatgaaacaagaacagcaacaacaaaataacgacctctcctctcagttattcattcaaaaccctaatggcaatagtagtaacatgttcggtgcaccacctcctcatatgagcgcaactgcattgctacaaaaagcagcacaaattggagtaacttcttcttctcatactgctaataacatgagcgccacaacttttttcagtcctactaccagtacaacaactggcattgcaatgtcaggatcaggatcaggagcaggagtagcacgtcaatatcatccatttgaaaataataataataataataatacaaacactgattttgttactggtaatacgtcttttcctgattttggtgcgagtgtcacccctgggttcatggaacaagtccatgacatgcaaaacatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="21408" stop="22554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21718" g_stop="22254" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="554" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E204436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21718" e_stop="22254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAACAATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATACACTTCAAAACTTCCAAATGAAACAAGAACAGCAACAACAAAATAACGACCTCTCCTCTCAGTTATTCATTCAAAACCCTAATGGCAATAGTAGTAACATGTTCGGTGCACCACCTCCTCATATGAGCGCAACTGCATTGCTACAAAAAGCAGCACAAATTGGAGTAACTTCTTCTTCTCATACTGCTAATAACATGAGCGCCACAACTTTTTTCAGTCCTACTACCAGTACAACAACTGGCATTGCAATGTCAGGATCAGGATCAGGAGCAGGAGTAGCACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATACAAACACTGATTTTGTTACTGGTAATACGTCTTTTCCTGATTTTGGTGCGAGTGTCACCCCTGGGTTCATGGAACAAGTCCATGACATGCAAAACATGAT</genome_strand>
        <mrna_strand>GAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAACAATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATACACTTCAAAACTTCCAAATGAAACAAGAACAGCAACAACAAAATAACGACCTCTCCTCTCAGTTATTCATTCAAAACCCTAATGGCAATAGTAGTAACATGTTCGGTGCACCACCTCCTCATATGAGCGCAACTGCATTGCTACAAAAAGCAGCACAAATTGGAGTAACTTCTTCTTCTCATACTGCTAATAACATGAGCGCCACAACTTTTTTCAGTCCTACTACCAGTACAACAACTGGCATTGCAATGTCAGGATCAGGATCAGGAGCAGGAGTAGCACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATACAAACACTGATTTTGTTACTGGTAATACGTCTTTTCCTGATTTTGGTGCGAGTGTCACCCCTGGGTTCATGGAACAAGTCCATGACATGCAAAACATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540269" ref_strand="+" ref_description="SGN-E540269 [TUS-60-H8]">
      <seq>tccaaatgaaacaagaacagcaacaacaaaataacgacctctcctctcagttattcattcaaaaccctaatggcaatagtagtaacatgttcggtgcaccacctcctcatatgagcgcaactgcattgctacaaaaagcagcacaaattggagtaacttcttcttctcatactgctaataacatgagcgccacaacttttttcagtcctactaccagtacaacaactggcattgcaatgtcaggatcaggatcaggagcaggagtagcacgtcaatatcatccatttgaaaataataataataataataatacaaacactgattttgttactggtaatacgtcttttcctgattttggtgcgagtgtcacccctgggttcatggaacaagtccatgacatgcaaaacatgatggctactactgcaccttctttgccatgtactagttttgatgaaggatttggtcgcggcgcgcatttgatgagacaaggtaaagaaaataatgaagggttgacaagagattttttgggacttagagcatttccacatcacagggattttctcagtactactacaccacctgctgctcttcattataacatgggttcttctgctgctgctgctgctcctgcttcatttgatcaacatcatcatcatcatcagaatcaaaatcaaaatcaattaccctggcaaaattagttctactatgatttctgaattttatttagacaacaatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="21543" stop="22882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21843" g_stop="22582" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E540269" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21843" e_stop="22582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAATGAAACAAGAACAGCAACAACAAAATAACGACCTCTCCTCTCAGTTATTCATTCAAAACCCTAATGGCAATAGTAGTAACATGTTCGGTGCACCACCTCCTCATATGAGCGCAACTGCATTGCTACAAAAAGCAGCACAAATTGGAGTAACTTCTTCTTCTCATACTGCTAATAACATGAGCGCCACAACTTTTTTCAGTCCTACTACCAGTACAACAACTGGCATTGCAATGTCAGGATCAGGATCAGGAGCAGGAGTAGCACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATACAAACACTGATTTTGTTACTGGTAATACGTCTTTTCCTGATTTTGGTGCGAGTGTCACCCCTGGGTTCATGGAACAAGTCCATGACATGCAAAACATGATGGCTACTACTGCACCTTCTTTGCCATGTACTAGTTTTGATGAAGGATTTGGTCGCGGCGCGCATTTGATGAGACAAGGTAAAGAAAATAATGAAGGGTTGACAAGAGATTTTTTGGGACTTAGAGCATTTCCACATCACAGGGATTTTCTCAGTACTACTACACCACCTGCTGCTCTTCATTATAACATGGGTTCTTCTGCTGCTGCTGCTGCTCCTGCTTCATTTGATCAACATCATCATCATCATCAGAATCAAAATCAAAATCAATTACCCTGGCAAAATTAGTTCTACTATGATTTCTGAATTTTATTTAGACAACAATACTTA</genome_strand>
        <mrna_strand>TCCAAATGAAACAAGAACAGCAACAACAAAATAACGACCTCTCCTCTCAGTTATTCATTCAAAACCCTAATGGCAATAGTAGTAACATGTTCGGTGCACCACCTCCTCATATGAGCGCAACTGCATTGCTACAAAAAGCAGCACAAATTGGAGTAACTTCTTCTTCTCATACTGCTAATAACATGAGCGCCACAACTTTTTTCAGTCCTACTACCAGTACAACAACTGGCATTGCAATGTCAGGATCAGGATCAGGAGCAGGAGTAGCACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATACAAACACTGATTTTGTTACTGGTAATACGTCTTTTCCTGATTTTGGTGCGAGTGTCACCCCTGGGTTCATGGAACAAGTCCATGACATGCAAAACATGATGGCTACTACTGCACCTTCTTTGCCATGTACTAGTTTTGATGAAGGATTTGGTCGCGGCGCGCATTTGATGAGACAAGGTAAAGAAAATAATGAAGGGTTGACAAGAGATTTTTTGGGACTTAGAGCATTTCCACATCACAGGGATTTTCTCAGTACTACTACACCACCTGCTGCTCTTCATTATAACATGGGTTCTTCTGCTGCTGCTGCTGCTCCTGCTTCATTTGATCAACATCATCATCATCATCAGAATCAAAATCAAAATCAATTACCCTGGCAAAATTAGTTCTACTATGATTTCTGAATTTTATTTAGACAACAATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540267" ref_strand="+" ref_description="SGN-E540267 [TUS-60-H8](-)">
      <seq>tcattcaaaaccctaatggcaatagtagtaacatgttcggtgcaccacctcttcatatgagcgcaactgcattgctacaaaaagcagcacaaattggagtaacttcttcttctcatactgctaataacatgagcgccacaacttttttcagtcctactaccagtacaacaactggcattgcaatgtcaggatcaggatcaggagcaggagtagcacgtcaatatcatccatttgaaaataataataataataataatacaaacactgattttgttactggtaatacgtcttttcctgattttggtgcgagtgtcacccctgggttcatggaacaagtccatgacatgcaaaacatgatggctactactgcaccttctttgccatgtactagttttgatgaaggatttggtcgcggcgcgcatttgatgagacaaggtaaagaaaataatgaagggttgacaagagattttttgggacttagagcatttccacatcacagggattttctcagtactactacaccacctgctgctcttcattataacatgggttcttctgctgctgctgctgctcctgcttcatttgatcaacatcatcatcatcatcagaatcaaaatcaaaatcaattaccctggcaaaattagttctactatgatttctgaattttatttagacaacaatacttagtattatattttgttgttgttttgtgtcagtgttaaaaagtcttggaagggagctaagcacccatcttaaattgctttttatttatataatatttttgtcttttcaggttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="21597" stop="22994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21897" g_stop="22702" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="806" r_length="806" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E540267" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21897" e_stop="22702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCAAAACCCTAATGGCAATAGTAGTAACATGTTCGGTGCACCACCTCCTCATATGAGCGCAACTGCATTGCTACAAAAAGCAGCACAAATTGGAGTAACTTCTTCTTCTCATACTGCTAATAACATGAGCGCCACAACTTTTTTCAGTCCTACTACCAGTACAACAACTGGCATTGCAATGTCAGGATCAGGATCAGGAGCAGGAGTAGCACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATACAAACACTGATTTTGTTACTGGTAATACGTCTTTTCCTGATTTTGGTGCGAGTGTCACCCCTGGGTTCATGGAACAAGTCCATGACATGCAAAACATGATGGCTACTACTGCACCTTCTTTGCCATGTACTAGTTTTGATGAAGGATTTGGTCGCGGCGCGCATTTGATGAGACAAGGTAAAGAAAATAATGAAGGGTTGACAAGAGATTTTTTGGGACTTAGAGCATTTCCACATCACAGGGATTTTCTCAGTACTACTACACCACCTGCTGCTCTTCATTATAACATGGGTTCTTCTGCTGCTGCTGCTGCTCCTGCTTCATTTGATCAACATCATCATCATCATCAGAATCAAAATCAAAATCAATTACCCTGGCAAAATTAGTTCTACTATGATTTCTGAATTTTATTTAGACAACAATACTTAGTATTATATTTTGTTGTTGTTTTGTGTCAGTGTTAAAAAGTCTTGGAAGGGAGCTAAGCACCCATCTTAAATTGCTTTTTATTTATATAATATTTTTGTCTTTTCAGGTTCAGTTATATT</genome_strand>
        <mrna_strand>TCATTCAAAACCCTAATGGCAATAGTAGTAACATGTTCGGTGCACCACCTCTTCATATGAGCGCAACTGCATTGCTACAAAAAGCAGCACAAATTGGAGTAACTTCTTCTTCTCATACTGCTAATAACATGAGCGCCACAACTTTTTTCAGTCCTACTACCAGTACAACAACTGGCATTGCAATGTCAGGATCAGGATCAGGAGCAGGAGTAGCACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATACAAACACTGATTTTGTTACTGGTAATACGTCTTTTCCTGATTTTGGTGCGAGTGTCACCCCTGGGTTCATGGAACAAGTCCATGACATGCAAAACATGATGGCTACTACTGCACCTTCTTTGCCATGTACTAGTTTTGATGAAGGATTTGGTCGCGGCGCGCATTTGATGAGACAAGGTAAAGAAAATAATGAAGGGTTGACAAGAGATTTTTTGGGACTTAGAGCATTTCCACATCACAGGGATTTTCTCAGTACTACTACACCACCTGCTGCTCTTCATTATAACATGGGTTCTTCTGCTGCTGCTGCTGCTCCTGCTTCATTTGATCAACATCATCATCATCATCAGAATCAAAATCAAAATCAATTACCCTGGCAAAATTAGTTCTACTATGATTTCTGAATTTTATTTAGACAACAATACTTAGTATTATATTTTGTTGTTGTTTTGTGTCAGTGTTAAAAAGTCTTGGAAGGGAGCTAAGCACCCATCTTAAATTGCTTTTTATTTATATAATATTTTTGTCTTTTCAGGTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392458" ref_strand="+" ref_description="SGN-E392458 [TUS-36-A24](-)">
      <seq>catgtactagttttgatgaaggatttggtcgcggggcgcatttgatgagacaaggtaaagaaaataatgaagggttgacaagagattttttgggacttagagcatttccacatcacagggattttctcagtactattacaccacctgctgctcttcattataacatgggttcttctgctgctgctgctgctcctgcttcatttgatcaacatcatcatcatcatcagaatcaaaatcaaaatcaattaccctggcaaaattagttctactatgatttctgaattttatttagacaacaatacttagtattatattttgttgttgttttgtgtcagtgttaaaaagtcttggaagggagctaagcacccatcttaaattgctttttatttatataatatttttgtctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="21978" stop="22983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22278" g_stop="22693" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E392458" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22278" e_stop="22693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTACTAGTTTTGATGAAGGATTTGGTCGCGGCGCGCATTTGATGAGACAAGGTAAAGAAAATAATGAAGGGTTGACAAGAGATTTTTTGGGACTTAGAGCATTTCCACATCACAGGGATTTTCTCAGTACTACTACACCACCTGCTGCTCTTCATTATAACATGGGTTCTTCTGCTGCTGCTGCTGCTCCTGCTTCATTTGATCAACATCATCATCATCATCAGAATCAAAATCAAAATCAATTACCCTGGCAAAATTAGTTCTACTATGATTTCTGAATTTTATTTAGACAACAATACTTAGTATTATATTTTGTTGTTGTTTTGTGTCAGTGTTAAAAAGTCTTGGAAGGGAGCTAAGCACCCATCTTAAATTGCTTTTTATTTATATAATATTTTTGTCTTTTCAGGTTC</genome_strand>
        <mrna_strand>CATGTACTAGTTTTGATGAAGGATTTGGTCGCGGGGCGCATTTGATGAGACAAGGTAAAGAAAATAATGAAGGGTTGACAAGAGATTTTTTGGGACTTAGAGCATTTCCACATCACAGGGATTTTCTCAGTACTATTACACCACCTGCTGCTCTTCATTATAACATGGGTTCTTCTGCTGCTGCTGCTGCTCCTGCTTCATTTGATCAACATCATCATCATCATCAGAATCAAAATCAAAATCAATTACCCTGGCAAAATTAGTTCTACTATGATTTCTGAATTTTATTTAGACAACAATACTTAGTATTATATTTTGTTGTTGTTTTGTGTCAGTGTTAAAAAGTCTTGGAAGGGAGCTAAGCACCCATCTTAAATTGCTTTTTATTTATATAATATTTTTGTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469099" ref_strand="+" ref_description="SGN-E469099 [cSTB-10-O10]">
      <seq>caggacttggtctaaatgaggaagtgcagccgaccatggaaaccaatacaagatttgccgacgttaagggtgttgatgaggcgaaaggggagttggaagaaattgttcactatctccgagaccctaagcgattcactcgtcttggtggcaaactcccaaagggtgtgctacttgttggtcctccgggaaccggtaagaccatgttggcaagagctatagctggagaagctggggttccctttttctcatgcagtggtagtgagtttgaagaaatgtttgtgggtgttggtgcccgaagagtaagagacctttttgcagctgctaagaaacgatcaccctgcattatattcattgatgaaattgatgccattggaggaagccgtaacccaaaggaccagcaatatatgaggatgactttgaatcagttgcttgttgagctggatggcttcaaacaaaatgatggaatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="39471" stop="42411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39771" g_stop="39898" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39899" i_stop="41769" i_length="1871">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41770" g_stop="42111" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="470" r_length="342" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E469099" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39771" e_stop="39898"/>
          <exon e_start="41770" e_stop="42111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGACTTGGTCTAAATGAGGAAGTGCAGCCGACCATGGAAACCAATACAAGATTTGCCGACGTTAAGGGTGTTGATGAGGCTAAAGGGGAGTTGGAAGAAATTGTTCACTATCTCCGAGACCCTAAGGTGAGTTTGTATGGGAGGTTTATTCAGTAACCACAAGAGCAATATATTCTCCTGTCAGCGTCAAAATTAATATAAGAAATTTTATTATTTGTGTCGAAGTCCTTGTGTGTCAGTAAAAGTAATGCTGGAAAGTCTGATATTGCCCTTGATGTTACAGTTGAGATTGGAAATGCAGGGCCGAAGTATATCTCTTTTAATTTATCTGCCTTTTCCCACCAAAAGTTCAATGAAGATGAAAATGACCTGAGAACCTGACAAGGATATATGTAGCCTGAGACAGTGTTATCAAAGGGGAAAGCACCAAAAGCTCTATGATCCGTTGGGGCTTTAATCACAAAGCACAAATAGAGCATGGGCTTTAATGAAAAAAGGCGCAAAGGGAGAAAAACTTGCACATTTATTTGTTTAGTCCAAGACTAATAATTATAAACATGTGGTTGACAGCATACCCACATTGCTGAGGAATATAACTTTACCTTGCTCAAAAAACAAACTAATAATTATAAACATGAATGACAAATAAATGAACAAAATTGAAAAAAGATTAAGATAACGGGAAATATCGATTGTTTAGTGTCACCTCTTCAAAATAGGCTGATGGACAAGGAAAAATATGTCTTAGAAAGCGAGCGAAGCAATCATCACATTTTTAGCCTAGCTTCAGGGCTTAAGCAAACCTTCAGCGTGCATTTGACAGCACTGACCCGAGAACATCAACCATCTTTTGTTAGTTAAATGTACTAACTGTACATTTTTCCTTTTTCTTGTGAAAAATGGACTTGCAAATTTGCAGCAAGCCCTTCCTCCCCTCATTGTCTGGAAAAGCTTCTAAAAGTCTATCATTTGTCAATTATATCCCTATATGTGTGGTATTGGGGGGAAAGGAAGGGTAGAAGAACTGACAAAAAGATTATAAGGGTTATTTCCCTTGAGTTAATACGTAGCTTCTCATCATTCAATTCCTCAATTGGATTTTCACATGGCTGAATATGAAAAAATTTCAGTTATCTGAAAAATGACCCCTAATTCTTTCTTTTTTTTCCGAAGACTGGTAATTTAATGTAAACAGGTATACTGCACAAGCAGTTTAGTCCCCCAAAAGTATAAATAGAAAAGTAGTGAACTTACTATCTGTATAGCTTGTTGCATACTGTCTAGAACATCAAAAATTATTCAGCTTCCACTAAATATTCTTGCTTACACCAAAATAATGAAGGGGCCAAGCAGTTCATCTTCAACTTCTGAATACTGCAGTTTTTGTCTCAAAACATCTCTGATTCCTTTTTCTTCAACCAGTCCACCAAATGCATGCTGGGATGATTCTTCATCTCTCTTTCTGAATGGTTACATGCACATCTCTGCTCCAACTATTTAGCACATCCAATATACCTCCTGGCATCACCCTGATAATTTCCCCTAAGTTGATAAATTTTTTGCTTATCTGATCTGTCCACTCTCAATGTAAAAAAAGAGGGTCTGATTGTCTGTGCCTGTTCTCCATAGGTAAAATCTAGATCATAACTGGTGCCGCCTTTTTATCTGTGCACTCTCAGTATAAGAAGGCTTTATCTCCAGTTCACCTTTGTCAACTTTTCTGAAAGGGAAATTGGTGACAATTCTGATTTTTGACTCACACTCACATTGAACATATCAAAGTTTTCGTGCTGTTGCTAATGTATGACTTTCTAATTTGGTTGGTAATTGCACTTAATTGTGTCAATATCTTTTTAGATCTTATGTGTTTCCCTTAATTTTAATTGTGTTTGTTTACCATTGACCTTTTGGCTTAGTCTTGATGGGAGCTTTTCAGATGATTTGTTTTAAAGCTGCGAGGTAGATGTTTTTACAGTTCCTTATTTTGACCTTTGCAGCGATTCACTCGTCTTGGTGGCAAACTCCCAAAGGGTGTGCTACTTGTTGGTCCTCCTGGAACCGGTAAGACCATGTTGGCAAGAGCTATAGCAGGAGAAGCTGGGGTTCCCTTTTTCTCATGCAGTGGTAGTGAGTTTGAGGAAATGTTTGTGGGTGTTGGAGCCCGGAGAGTAAGAGACCTTTTTGCAGCTGCTAAGAAACGATCACCCTGCATTATATTCATTGATGAAATTGATGCCATTGGAGGAAGCCGTAACCCAAAGGACCAACAATATATGAGGATGACTTTGAATCAGTTGCTTGTTGAGCTGGATGGGTTCAAACAAAATGATGGAGTCATT</genome_strand>
        <mrna_strand>CAGGACTTGGTCTAAATGAGGAAGTGCAGCCGACCATGGAAACCAATACAAGATTTGCCGACGTTAAGGGTGTTGATGAGGCGAAAGGGGAGTTGGAAGAAATTGTTCACTATCTCCGAGACCCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTCACTCGTCTTGGTGGCAAACTCCCAAAGGGTGTGCTACTTGTTGGTCCTCCGGGAACCGGTAAGACCATGTTGGCAAGAGCTATAGCTGGAGAAGCTGGGGTTCCCTTTTTCTCATGCAGTGGTAGTGAGTTTGAAGAAATGTTTGTGGGTGTTGGTGCCCGAAGAGTAAGAGACCTTTTTGCAGCTGCTAAGAAACGATCACCCTGCATTATATTCATTGATGAAATTGATGCCATTGGAGGAAGCCGTAACCCAAAGGACCAGCAATATATGAGGATGACTTTGAATCAGTTGCTTGTTGAGCTGGATGGCTTCAAACAAAATGATGGAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710195" ref_strand="+" ref_description="SGN-E710195 [FA54CC11]">
      <seq>ctaaatgaggaagtgcagccgaccatgcaaacaatacaagatttgccgacgttaagggtgttgatgaggctaaaggggagttggaagaaattgttcactatctccgagaccctaagcgattcactcgtcttggtggcaaactcccaaagggtgtgctacttgttggtcctcctggaaccggtaagaccatgttggcaagagctatagcaggagaagctggggttccctttttctcatgcagtggtagtgagtttgaggaaatgtttgtgggtgttggagcccggagagtaagagacctttttgcagctgctaagaaacgatcaccctgcattatattcattgatgaaattgatgccattggaggaagccgtaacccaaaggaccaacaatatatgaggatgactttgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="39482" stop="42364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39782" g_stop="39898" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39899" i_stop="41769" i_length="1871">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41770" g_stop="42064" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="411" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E710195" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39782" e_stop="39898"/>
          <exon e_start="41770" e_stop="42064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATGAGGAAGTGCAGCCGACCATGGAAACCAATACAAGATTTGCCGACGTTAAGGGTGTTGATGAGGCTAAAGGGGAGTTGGAAGAAATTGTTCACTATCTCCGAGACCCTAAGGTGAGTTTGTATGGGAGGTTTATTCAGTAACCACAAGAGCAATATATTCTCCTGTCAGCGTCAAAATTAATATAAGAAATTTTATTATTTGTGTCGAAGTCCTTGTGTGTCAGTAAAAGTAATGCTGGAAAGTCTGATATTGCCCTTGATGTTACAGTTGAGATTGGAAATGCAGGGCCGAAGTATATCTCTTTTAATTTATCTGCCTTTTCCCACCAAAAGTTCAATGAAGATGAAAATGACCTGAGAACCTGACAAGGATATATGTAGCCTGAGACAGTGTTATCAAAGGGGAAAGCACCAAAAGCTCTATGATCCGTTGGGGCTTTAATCACAAAGCACAAATAGAGCATGGGCTTTAATGAAAAAAGGCGCAAAGGGAGAAAAACTTGCACATTTATTTGTTTAGTCCAAGACTAATAATTATAAACATGTGGTTGACAGCATACCCACATTGCTGAGGAATATAACTTTACCTTGCTCAAAAAACAAACTAATAATTATAAACATGAATGACAAATAAATGAACAAAATTGAAAAAAGATTAAGATAACGGGAAATATCGATTGTTTAGTGTCACCTCTTCAAAATAGGCTGATGGACAAGGAAAAATATGTCTTAGAAAGCGAGCGAAGCAATCATCACATTTTTAGCCTAGCTTCAGGGCTTAAGCAAACCTTCAGCGTGCATTTGACAGCACTGACCCGAGAACATCAACCATCTTTTGTTAGTTAAATGTACTAACTGTACATTTTTCCTTTTTCTTGTGAAAAATGGACTTGCAAATTTGCAGCAAGCCCTTCCTCCCCTCATTGTCTGGAAAAGCTTCTAAAAGTCTATCATTTGTCAATTATATCCCTATATGTGTGGTATTGGGGGGAAAGGAAGGGTAGAAGAACTGACAAAAAGATTATAAGGGTTATTTCCCTTGAGTTAATACGTAGCTTCTCATCATTCAATTCCTCAATTGGATTTTCACATGGCTGAATATGAAAAAATTTCAGTTATCTGAAAAATGACCCCTAATTCTTTCTTTTTTTTCCGAAGACTGGTAATTTAATGTAAACAGGTATACTGCACAAGCAGTTTAGTCCCCCAAAAGTATAAATAGAAAAGTAGTGAACTTACTATCTGTATAGCTTGTTGCATACTGTCTAGAACATCAAAAATTATTCAGCTTCCACTAAATATTCTTGCTTACACCAAAATAATGAAGGGGCCAAGCAGTTCATCTTCAACTTCTGAATACTGCAGTTTTTGTCTCAAAACATCTCTGATTCCTTTTTCTTCAACCAGTCCACCAAATGCATGCTGGGATGATTCTTCATCTCTCTTTCTGAATGGTTACATGCACATCTCTGCTCCAACTATTTAGCACATCCAATATACCTCCTGGCATCACCCTGATAATTTCCCCTAAGTTGATAAATTTTTTGCTTATCTGATCTGTCCACTCTCAATGTAAAAAAAGAGGGTCTGATTGTCTGTGCCTGTTCTCCATAGGTAAAATCTAGATCATAACTGGTGCCGCCTTTTTATCTGTGCACTCTCAGTATAAGAAGGCTTTATCTCCAGTTCACCTTTGTCAACTTTTCTGAAAGGGAAATTGGTGACAATTCTGATTTTTGACTCACACTCACATTGAACATATCAAAGTTTTCGTGCTGTTGCTAATGTATGACTTTCTAATTTGGTTGGTAATTGCACTTAATTGTGTCAATATCTTTTTAGATCTTATGTGTTTCCCTTAATTTTAATTGTGTTTGTTTACCATTGACCTTTTGGCTTAGTCTTGATGGGAGCTTTTCAGATGATTTGTTTTAAAGCTGCGAGGTAGATGTTTTTACAGTTCCTTATTTTGACCTTTGCAGCGATTCACTCGTCTTGGTGGCAAACTCCCAAAGGGTGTGCTACTTGTTGGTCCTCCTGGAACCGGTAAGACCATGTTGGCAAGAGCTATAGCAGGAGAAGCTGGGGTTCCCTTTTTCTCATGCAGTGGTAGTGAGTTTGAGGAAATGTTTGTGGGTGTTGGAGCCCGGAGAGTAAGAGACCTTTTTGCAGCTGCTAAGAAACGATCACCCTGCATTATATTCATTGATGAAATTGATGCCATTGGAGGAAGCCGTAACCCAAAGGACCAACAATATATGAGGATGACTTTGAATC</genome_strand>
        <mrna_strand>CTAAATGAGGAAGTGCAGCCGACCATGCAAA-CAATACAAGATTTGCCGACGTTAAGGGTGTTGATGAGGCTAAAGGGGAGTTGGAAGAAATTGTTCACTATCTCCGAGACCCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTCACTCGTCTTGGTGGCAAACTCCCAAAGGGTGTGCTACTTGTTGGTCCTCCTGGAACCGGTAAGACCATGTTGGCAAGAGCTATAGCAGGAGAAGCTGGGGTTCCCTTTTTCTCATGCAGTGGTAGTGAGTTTGAGGAAATGTTTGTGGGTGTTGGAGCCCGGAGAGTAAGAGACCTTTTTGCAGCTGCTAAGAAACGATCACCCTGCATTATATTCATTGATGAAATTGATGCCATTGGAGGAAGCCGTAACCCAAAGGACCAACAATATATGAGGATGACTTTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409338" ref_strand="+" ref_description="SGN-E409338 [PPI-13-F14]">
      <seq>ggcaagctcccaaaaggagtattacttgttggcccccctggaactggtaagaccatgttggcgagggccatagctggagaagctggggttccctttttctcatgcagtggcagtgagtttgaagaaatgtttgttggtgtcggagctcgcagagtgagagacctttttgctgctgctaagaagcgatcaccatgcattatattcattgatgagattgatgccattggaggaagccgtaacccaaaggatcagcaatatatgaggatgactttaaatcaattgcttgtcgagctggatggcttcaaacaaaatgatggaatcattgtgattgctgccactaattttgctgagtcactggataaggcattggtgagacctggacgatttgatcgcaacattgttgtcccaaatcctgatgttgaagggcggaagcagattttggaatctcacatgtcaaagattctgaaggcggatgatgttgaccttatgatcattgctcgggggactcctggattttctggtgcagaccttgcaaacttggtgaatatcgctgctgtgaaggctgctatggatggtgccaaagccgtaagcttggctgatctagagcatgctaaggacaagatcatgatgggaagtgagcgcaaatcagcctttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="41488" stop="43332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41788" g_stop="42246" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42247" i_stop="42834" i_length="588">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42835" g_stop="43032" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="657" r_length="198" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E409338" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41788" e_stop="42246"/>
          <exon e_start="42835" e_stop="43032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAACTCCCAAAGGGTGTGCTACTTGTTGGTCCTCCTGGAACCGGTAAGACCATGTTGGCAAGAGCTATAGCAGGAGAAGCTGGGGTTCCCTTTTTCTCATGCAGTGGTAGTGAGTTTGAGGAAATGTTTGTGGGTGTTGGAGCCCGGAGAGTAAGAGACCTTTTTGCAGCTGCTAAGAAACGATCACCCTGCATTATATTCATTGATGAAATTGATGCCATTGGAGGAAGCCGTAACCCAAAGGACCAACAATATATGAGGATGACTTTGAATCAGTTGCTTGTTGAGCTGGATGGGTTCAAACAAAATGATGGAGTCATTGTGATTGCGGCCACTAACTTCCCAGAATCATTGGACAAGGCACTGGTGAGACCTGGACGATTCGATCGCAACATTGTTGTCCCAAATCCTGATGTTGAAGGTCGGAAGCAGATTCTGGAATCTCACATGTCAAAGGTATTGTTTCTGGACAATGAGGCATTTCTATATACCCTGCAGTTTCTAGGTCATTGCTCTCATGAACTATTTGTAGGGACATGCAGCTATTCTTATGCTTTTCTAATAGCCGACAGATTTTCTTTGACTATATCTCTTTTAGCTTTTTAAACAAGAAATATGCATGTACACATTGTCTTGCATCCTTTTTTCTATTGATGAATCTAATTCTATTGACCTATACTGTGAAATGATTGAAGTATTTGAAGACATCCTTTGGAATTAGTCTGACCTGGTACAATTGAGTTGCCTACTCGTGAAGGTTCATTGTACATATCTTCCCTTGTGGCATTTTTTATCCATCACATTTTACTTTGACATTGTTGGTTGGCAGCACCTATATTTATGTGAGTTTAATCTTGCAAGAATTTTCTACCATGTCAAACTGGAGTTGGTAGCCTCAAAACATTCCTTTGTTTCCACCATGCATGGTTCATTTTGACCATCTTTCTAAGCTGGATTGTTAACTGCAGATGCAACTGCAATTTTCAAGGGTTTTACTTAGCATCATTTCTAATCTTTCTGTCAAAAACATTTCCTATCTGGCAGATTGTCAAGGCAGATGATGTCGACCTTATGATCATTTCTAGGGGGACTCCTGGGTTTTCCGGGGCTGACCTTGCCAATTTGGTTAACATTGCTGCTGTGAAGGCTGCAATGGAAGGTGCTAAAGCTGTAAGCTTGGCTGATCTAGAGTATGCTAAGGACAAGATCATGATGGGAAGTGAGCGCAAATCAGCTTTCATA</genome_strand>
        <mrna_strand>GGCAAGCTCCCAAAAGGAGTATTACTTGTTGGCCCCCCTGGAACTGGTAAGACCATGTTGGCGAGGGCCATAGCTGGAGAAGCTGGGGTTCCCTTTTTCTCATGCAGTGGCAGTGAGTTTGAAGAAATGTTTGTTGGTGTCGGAGCTCGCAGAGTGAGAGACCTTTTTGCTGCTGCTAAGAAGCGATCACCATGCATTATATTCATTGATGAGATTGATGCCATTGGAGGAAGCCGTAACCCAAAGGATCAGCAATATATGAGGATGACTTTAAATCAATTGCTTGTCGAGCTGGATGGCTTCAAACAAAATGATGGAATCATTGTGATTGCTGCCACTAATTTTGCTGAGTCACTGGATAAGGCATTGGTGAGACCTGGACGATTTGATCGCAACATTGTTGTCCCAAATCCTGATGTTGAAGGGCGGAAGCAGATTTTGGAATCTCACATGTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGAAGGCGGATGATGTTGACCTTATGATCATTGCTCGGGGGACTCCTGGATTTTCTGGTGCAGACCTTGCAAACTTGGTGAATATCGCTGCTGTGAAGGCTGCTATGGATGGTGCCAAAGCCGTAAGCTTGGCTGATCTAGAGCATGCTAAGGACAAGATCATGATGGGAAGTGAGCGCAAATCAGCCTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698636" ref_strand="+" ref_description="SGN-E698636 [FA07AE04]">
      <seq>tacttgttggtcctcctggaaccccctttaacatgttggcaagagctatagcaggagaagctggggttccctttttctcatgcagtggtagtgagtttgaggaaatgtttgtgggtgttggagcccggagagtaagagacctttttgcagctgctaagaaacgatcaccctgcattatattcattgatgaaattgatgccattggaggaagccgtaacccaaaggaccaacaatatatgaggatgactttgaatcagttgcttgttgagctggatgggttcaaacaaaatgatggagtcattgtgattgcggccactaacttcccagaatcattggacaaggcactggtgagacctggacgattcgatcgcaacattgttgtcccaaatcctgatgttgaaggtcggaagcagattctggaatctcacatgtccaagattgtcaaggcagatgatgtcgaccttatgatcatttctagggggactcctgggttttccggggctgaccttgccaatttggttaacattgctgctgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="41510" stop="43234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41810" g_stop="42246" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42247" i_stop="42834" i_length="588">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42835" g_stop="42934" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="537" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E698636" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41810" e_stop="42246"/>
          <exon e_start="42835" e_stop="42934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTGTTGGTCCTCCTGGAACCGGTAAGACCATGTTGGCAAGAGCTATAGCAGGAGAAGCTGGGGTTCCCTTTTTCTCATGCAGTGGTAGTGAGTTTGAGGAAATGTTTGTGGGTGTTGGAGCCCGGAGAGTAAGAGACCTTTTTGCAGCTGCTAAGAAACGATCACCCTGCATTATATTCATTGATGAAATTGATGCCATTGGAGGAAGCCGTAACCCAAAGGACCAACAATATATGAGGATGACTTTGAATCAGTTGCTTGTTGAGCTGGATGGGTTCAAACAAAATGATGGAGTCATTGTGATTGCGGCCACTAACTTCCCAGAATCATTGGACAAGGCACTGGTGAGACCTGGACGATTCGATCGCAACATTGTTGTCCCAAATCCTGATGTTGAAGGTCGGAAGCAGATTCTGGAATCTCACATGTCAAAGGTATTGTTTCTGGACAATGAGGCATTTCTATATACCCTGCAGTTTCTAGGTCATTGCTCTCATGAACTATTTGTAGGGACATGCAGCTATTCTTATGCTTTTCTAATAGCCGACAGATTTTCTTTGACTATATCTCTTTTAGCTTTTTAAACAAGAAATATGCATGTACACATTGTCTTGCATCCTTTTTTCTATTGATGAATCTAATTCTATTGACCTATACTGTGAAATGATTGAAGTATTTGAAGACATCCTTTGGAATTAGTCTGACCTGGTACAATTGAGTTGCCTACTCGTGAAGGTTCATTGTACATATCTTCCCTTGTGGCATTTTTTATCCATCACATTTTACTTTGACATTGTTGGTTGGCAGCACCTATATTTATGTGAGTTTAATCTTGCAAGAATTTTCTACCATGTCAAACTGGAGTTGGTAGCCTCAAAACATTCCTTTGTTTCCACCATGCATGGTTCATTTTGACCATCTTTCTAAGCTGGATTGTTAACTGCAGATGCAACTGCAATTTTCAAGGGTTTTACTTAGCATCATTTCTAATCTTTCTGTCAAAAACATTTCCTATCTGGCAGATTGTCAAGGCAGATGATGTCGACCTTATGATCATTTCTAGGGGGACTCCTGGGTTTTCCGGGGCTGACCTTGCCAATTTGGTTAACATTGCTGCTGTGA</genome_strand>
        <mrna_strand>TACTTGTTGGTCCTCCTGGAACCCCCTTTAACATGTTGGCAAGAGCTATAGCAGGAGAAGCTGGGGTTCCCTTTTTCTCATGCAGTGGTAGTGAGTTTGAGGAAATGTTTGTGGGTGTTGGAGCCCGGAGAGTAAGAGACCTTTTTGCAGCTGCTAAGAAACGATCACCCTGCATTATATTCATTGATGAAATTGATGCCATTGGAGGAAGCCGTAACCCAAAGGACCAACAATATATGAGGATGACTTTGAATCAGTTGCTTGTTGAGCTGGATGGGTTCAAACAAAATGATGGAGTCATTGTGATTGCGGCCACTAACTTCCCAGAATCATTGGACAAGGCACTGGTGAGACCTGGACGATTCGATCGCAACATTGTTGTCCCAAATCCTGATGTTGAAGGTCGGAAGCAGATTCTGGAATCTCACATGTCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGGCAGATGATGTCGACCTTATGATCATTTCTAGGGGGACTCCTGGGTTTTCCGGGGCTGACCTTGCCAATTTGGTTAACATTGCTGCTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458837" ref_strand="+" ref_description="SGN-E458837 [cPRO-32-F13]">
      <seq>ctttttgctgctgctaagaagcgatcaccatgcattatattcattgatgagattgatgccattggaggaagccgtaacccaaaggatcagcaatatatgaggatgactttaaatcaattgcttgtcgagctggatggcttcaaacaaaatgatggaatcattgtgattgctgccactaattttgctgagtcactggataaggcattggtgagacctggacgatttgatcgcaacattgttgtcccaaatcctgatgttgaagggcggaagcagattttggaatctcacatgtcaaagattctgaaggcggatgatgttgaccttatgatcattgctcgggggactcctggattttctggtgcagaccttgcaaacttggtgaatatcgctgcagtgaaggctgctatggatggtgccaaagccgtaagcttggctgatctagagcatgctaaggacaagatcatgatgggaagtgagcgcaaatcagcttttatatcccaagagtcgagaaaactcacagcataccatgaaggtggtcatgcacttgtagctattcatacagatggggctcttcctgtgcacaaagcaactattgttccacgaggaatggctcttggtatggttgctcaattacctgaaaaggacgagactagcatctcccgtaagcagatgcttgcacgacttgatgttgccatgggtgggcgagttgctgaagagctcatttttggcgaaagtgaagttactactggtccatctgatgatctcaagcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="41650" stop="43593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41950" g_stop="42246" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42247" i_stop="42834" i_length="588">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42835" g_stop="43311" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="774" r_length="477" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E458837" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41950" e_stop="42246"/>
          <exon e_start="42835" e_stop="43311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGCAGCTGCTAAGAAACGATCACCCTGCATTATATTCATTGATGAAATTGATGCCATTGGAGGAAGCCGTAACCCAAAGGACCAACAATATATGAGGATGACTTTGAATCAGTTGCTTGTTGAGCTGGATGGGTTCAAACAAAATGATGGAGTCATTGTGATTGCGGCCACTAACTTCCCAGAATCATTGGACAAGGCACTGGTGAGACCTGGACGATTCGATCGCAACATTGTTGTCCCAAATCCTGATGTTGAAGGTCGGAAGCAGATTCTGGAATCTCACATGTCAAAGGTATTGTTTCTGGACAATGAGGCATTTCTATATACCCTGCAGTTTCTAGGTCATTGCTCTCATGAACTATTTGTAGGGACATGCAGCTATTCTTATGCTTTTCTAATAGCCGACAGATTTTCTTTGACTATATCTCTTTTAGCTTTTTAAACAAGAAATATGCATGTACACATTGTCTTGCATCCTTTTTTCTATTGATGAATCTAATTCTATTGACCTATACTGTGAAATGATTGAAGTATTTGAAGACATCCTTTGGAATTAGTCTGACCTGGTACAATTGAGTTGCCTACTCGTGAAGGTTCATTGTACATATCTTCCCTTGTGGCATTTTTTATCCATCACATTTTACTTTGACATTGTTGGTTGGCAGCACCTATATTTATGTGAGTTTAATCTTGCAAGAATTTTCTACCATGTCAAACTGGAGTTGGTAGCCTCAAAACATTCCTTTGTTTCCACCATGCATGGTTCATTTTGACCATCTTTCTAAGCTGGATTGTTAACTGCAGATGCAACTGCAATTTTCAAGGGTTTTACTTAGCATCATTTCTAATCTTTCTGTCAAAAACATTTCCTATCTGGCAGATTGTCAAGGCAGATGATGTCGACCTTATGATCATTTCTAGGGGGACTCCTGGGTTTTCCGGGGCTGACCTTGCCAATTTGGTTAACATTGCTGCTGTGAAGGCTGCAATGGAAGGTGCTAAAGCTGTAAGCTTGGCTGATCTAGAGTATGCTAAGGACAAGATCATGATGGGAAGTGAGCGCAAATCAGCTTTCATATCCAAAGAGACGAGAAAGCTTACAGCCTACCATGAAGGTGGCCATGCTCTTGTGGCTATTCATACAGATGGGGCTCTTCCAGTGCACAAGGCAACCATTGTTCCACGTGGAATGGCTCTTGGTATGGTTGCTCAATTGCCAGAGAAGGATGAGACTAGTATGTCCCGTAAGCAGATGCTTGCTCGGCTTGATGTTTGCATGGGTGGACGAGTTGCTGAAGAGCTCATTTTTGGAGAAAGTGAAGTAACTTCTGGTCCTTCTAGCGATCTCCAGCAAGCA</genome_strand>
        <mrna_strand>CTTTTTGCTGCTGCTAAGAAGCGATCACCATGCATTATATTCATTGATGAGATTGATGCCATTGGAGGAAGCCGTAACCCAAAGGATCAGCAATATATGAGGATGACTTTAAATCAATTGCTTGTCGAGCTGGATGGCTTCAAACAAAATGATGGAATCATTGTGATTGCTGCCACTAATTTTGCTGAGTCACTGGATAAGGCATTGGTGAGACCTGGACGATTTGATCGCAACATTGTTGTCCCAAATCCTGATGTTGAAGGGCGGAAGCAGATTTTGGAATCTCACATGTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGAAGGCGGATGATGTTGACCTTATGATCATTGCTCGGGGGACTCCTGGATTTTCTGGTGCAGACCTTGCAAACTTGGTGAATATCGCTGCAGTGAAGGCTGCTATGGATGGTGCCAAAGCCGTAAGCTTGGCTGATCTAGAGCATGCTAAGGACAAGATCATGATGGGAAGTGAGCGCAAATCAGCTTTTATATCCCAAGAGTCGAGAAAACTCACAGCATACCATGAAGGTGGTCATGCACTTGTAGCTATTCATACAGATGGGGCTCTTCCTGTGCACAAAGCAACTATTGTTCCACGAGGAATGGCTCTTGGTATGGTTGCTCAATTACCTGAAAAGGACGAGACTAGCATCTCCCGTAAGCAGATGCTTGCACGACTTGATGTTGCCATGGGTGGGCGAGTTGCTGAAGAGCTCATTTTTGGCGAAAGTGAAGTTACTACTGGTCCATCTGATGATCTCAAGCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284626" ref_strand="+" ref_description="SGN-E284626 [cLES-3-P15]">
      <seq>tggatgggttcaaacaaaatgatggagtcattgtgattgcggccactaacttcccagaatcattggacaaggcactggtgagacctggacgattcgatcgcaacattgttgtcccaaatcctgatgttgaaggtcggaagcagattctggaatctcacatgtcaaagattgtcaaggcagatgatgtcgaccttatgatcatttctagggggactcctgggttttccggggctgaccttgccaatttggttaacattgctgctgtgaaggctgcaatggaaggtgctaaagctgtaagcttggctgatctagagtatgctaaggacaagatcatgatgggaagtgagcgcaaatcagctttcatatccaaagagacgagaaagcttacagcctaccatgaaggtggccatgctcttgtggctattcatacagatggggctcttccagtgcacaaggcaaccattgttccacgtggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="41780" stop="43446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42080" g_stop="42246" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42247" i_stop="42834" i_length="588">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42835" g_stop="43146" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="479" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E284626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42080" e_stop="42246"/>
          <exon e_start="42835" e_stop="43146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGGGTTCAAACAAAATGATGGAGTCATTGTGATTGCGGCCACTAACTTCCCAGAATCATTGGACAAGGCACTGGTGAGACCTGGACGATTCGATCGCAACATTGTTGTCCCAAATCCTGATGTTGAAGGTCGGAAGCAGATTCTGGAATCTCACATGTCAAAGGTATTGTTTCTGGACAATGAGGCATTTCTATATACCCTGCAGTTTCTAGGTCATTGCTCTCATGAACTATTTGTAGGGACATGCAGCTATTCTTATGCTTTTCTAATAGCCGACAGATTTTCTTTGACTATATCTCTTTTAGCTTTTTAAACAAGAAATATGCATGTACACATTGTCTTGCATCCTTTTTTCTATTGATGAATCTAATTCTATTGACCTATACTGTGAAATGATTGAAGTATTTGAAGACATCCTTTGGAATTAGTCTGACCTGGTACAATTGAGTTGCCTACTCGTGAAGGTTCATTGTACATATCTTCCCTTGTGGCATTTTTTATCCATCACATTTTACTTTGACATTGTTGGTTGGCAGCACCTATATTTATGTGAGTTTAATCTTGCAAGAATTTTCTACCATGTCAAACTGGAGTTGGTAGCCTCAAAACATTCCTTTGTTTCCACCATGCATGGTTCATTTTGACCATCTTTCTAAGCTGGATTGTTAACTGCAGATGCAACTGCAATTTTCAAGGGTTTTACTTAGCATCATTTCTAATCTTTCTGTCAAAAACATTTCCTATCTGGCAGATTGTCAAGGCAGATGATGTCGACCTTATGATCATTTCTAGGGGGACTCCTGGGTTTTCCGGGGCTGACCTTGCCAATTTGGTTAACATTGCTGCTGTGAAGGCTGCAATGGAAGGTGCTAAAGCTGTAAGCTTGGCTGATCTAGAGTATGCTAAGGACAAGATCATGATGGGAAGTGAGCGCAAATCAGCTTTCATATCCAAAGAGACGAGAAAGCTTACAGCCTACCATGAAGGTGGCCATGCTCTTGTGGCTATTCATACAGATGGGGCTCTTCCAGTGCACAAGGCAACCATTGTTCCACGTGGAATG</genome_strand>
        <mrna_strand>TGGATGGGTTCAAACAAAATGATGGAGTCATTGTGATTGCGGCCACTAACTTCCCAGAATCATTGGACAAGGCACTGGTGAGACCTGGACGATTCGATCGCAACATTGTTGTCCCAAATCCTGATGTTGAAGGTCGGAAGCAGATTCTGGAATCTCACATGTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGGCAGATGATGTCGACCTTATGATCATTTCTAGGGGGACTCCTGGGTTTTCCGGGGCTGACCTTGCCAATTTGGTTAACATTGCTGCTGTGAAGGCTGCAATGGAAGGTGCTAAAGCTGTAAGCTTGGCTGATCTAGAGTATGCTAAGGACAAGATCATGATGGGAAGTGAGCGCAAATCAGCTTTCATATCCAAAGAGACGAGAAAGCTTACAGCCTACCATGAAGGTGGCCATGCTCTTGTGGCTATTCATACAGATGGGGCTCTTCCAGTGCACAAGGCAACCATTGTTCCACGTGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594090" ref_strand="+" ref_description="SGN-E594090 [37334]">
      <seq>ctcttgtggctattcatacagatggggctcttccagtgcacaatgcaaccattgttccacgtggaatggctcttggtatggttgctcaattgccagagaaggatgagactagtatgtcccgtaagcagatgcttgctcggcttgatgtttgcatgggtggacgagttgctgaagagctcatttttggagaaagtgaagtaacttctggtccttctagcgatctccagcaagcaaccaatctagccagggccatggttacaaagtttggtatgagcaaataagtggggcttgtcacccacaactacgatgataatgggaagagtatgagcactgaaacgaggcttctcattgagaaggaagtaagagaattacttgaaagggcttacaacaatgcgaaaatgattctcaccgacccatatcaaagagcttcatgcgcttgccaatgcattgcttgagcaggaaacgatgaccggaaatcagattaaggccctgcttacccatgtcaattctcaacaaacacagcaaaagaaacctcaattagtctcagaggagagtccatcacagtccaatccatctcctccatcaaatccggctgctgttgcagcgagctgcagccgctgcagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="42779" stop="44003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43079" g_stop="43709" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E594090" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43079" e_stop="43709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGTGGCTATTCATACAGATGGGGCTCTTCCAGTGCACAAGGCAACCATTGTTCCACGTGGAATGGCTCTTGGTATGGTTGCTCAATTGCCAGAGAAGGATGAGACTAGTATGTCCCGTAAGCAGATGCTTGCTCGGCTTGATGTTTGCATGGGTGGACGAGTTGCTGAAGAGCTCATTTTTGGAGAAAGTGAAGTAACTTCTGGTCCTTCTAGCGATCTCCAGCAAGCAACCAATCTAGCCAGGGCCATGGTTACAAAGTTTGGTATGAGCAAAGAAGTGGGGCTTGTTACCCACAACTACGATGATAATGGGAAGAGTATGAGCACTGAAACGAGGCTTCTCATTGAGAAGGAAGTAAGAGAATTACTTGAAAGGGCTTACAACAATGCGAAAATGATTCTCACC-ACCCATATCAAAGAGCTTCATGCTCTTGCCAATGCATTGCTTGAGCAGGAAACGATGACCGGAAATCAGATTAAGGCCCTGCTTACCCATGTCAATTCTAAACAAACACAGCAAAAGAAACCTCAATTAGTCTCAGAGGAGAGTCCATCACAGCCCAATCCATCTCCTCCATCAAATCCGGCTGCTGCAGCAGCAGCAGCAGCTGCAGCCGCTGCAGCTGC</genome_strand>
        <mrna_strand>CTCTTGTGGCTATTCATACAGATGGGGCTCTTCCAGTGCACAATGCAACCATTGTTCCACGTGGAATGGCTCTTGGTATGGTTGCTCAATTGCCAGAGAAGGATGAGACTAGTATGTCCCGTAAGCAGATGCTTGCTCGGCTTGATGTTTGCATGGGTGGACGAGTTGCTGAAGAGCTCATTTTTGGAGAAAGTGAAGTAACTTCTGGTCCTTCTAGCGATCTCCAGCAAGCAACCAATCTAGCCAGGGCCATGGTTACAAAGTTTGGTATGAGCAAATAAGTGGGGCTTGTCACCCACAACTACGATGATAATGGGAAGAGTATGAGCACTGAAACGAGGCTTCTCATTGAGAAGGAAGTAAGAGAATTACTTGAAAGGGCTTACAACAATGCGAAAATGATTCTCACCGACCCATATCAAAGAGCTTCATGCGCTTGCCAATGCATTGCTTGAGCAGGAAACGATGACCGGAAATCAGATTAAGGCCCTGCTTACCCATGTCAATTCTCAACAAACACAGCAAAAGAAACCTCAATTAGTCTCAGAGGAGAGTCCATCACAGTCCAATCCATCTCCTCCATCAAATCCGGCTGCT---GTTGCAGC-G-AGCTGCAGCCGCTGCAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451833" ref_strand="+" ref_description="SGN-E451833 [cSTS-14-I12]">
      <seq>tgctcggcttgatgtttgcatgggtggacgagttgctgaagagctcctttttggagatagtgaagtaacttctggtccttctagcgaatctccagcaagcaaccaatctagccagggccatggttacaaagtttggtatgagcaaagaagtggggcttgtcacccacaactacgatgataatgggaagagtatgagcactgaaacgaggcttctcattgagaaggaagtaagagaattacttgaaagggcttacaacaatgcgaaaatgattctcaccacccatatcaaagagcttcatgcgcttgccaatgcattgcttgagcaggaaacgatgaccggaaatcagattaaggccctgcttacccatgtcaattctcaacaaacacagcaaaagaaacctcaattagtctcagaggagagtccatcacagtccaatccatctcctccatcaaatccggctgctgttgcagcagctgcagccgctgcagctgcggccactgccgcagccaaaacccaaggcattgctcctgtaggatcttagcatggtaacttcttgntagtttttatcaatccatgtgcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="42912" stop="44032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43212" g_stop="43800" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E451833" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43212" e_stop="43800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCGGCTTGATGTTTGCATGGGTGGACGAGTTGCTGAAGAGCTCATTTTTGGAGAAAGTGAAGTAACTTCTGGTCCTTCTAGCG-ATCTCCAGCAAGCAACCAATCTAGCCAGGGCCATGGTTACAAAGTTTGGTATGAGCAAAGAAGTGGGGCTTGTTACCCACAACTACGATGATAATGGGAAGAGTATGAGCACTGAAACGAGGCTTCTCATTGAGAAGGAAGTAAGAGAATTACTTGAAAGGGCTTACAACAATGCGAAAATGATTCTCACCACCCATATCAAAGAGCTTCATGCTCTTGCCAATGCATTGCTTGAGCAGGAAACGATGACCGGAAATCAGATTAAGGCCCTGCTTACCCATGTCAATTCTAAACAAACACAGCAAAAGAAACCTCAATTAGTCTCAGAGGAGAGTCCATCACAGCCCAATCCATCTCCTCCATCAAATCCGGCTGCTGCAGCAGCAGCAGCAGCTGCAGCCGCTGCAGCTGCGGCCACTGCCGCAGCCAAAACCAAAGGCATTGCTCCTGTAGGATCTTAGTGTGGTAACTTGTTGCTAGTTTTTATCAATCCATGTGCATAT</genome_strand>
        <mrna_strand>TGCTCGGCTTGATGTTTGCATGGGTGGACGAGTTGCTGAAGAGCTCCTTTTTGGAGATAGTGAAGTAACTTCTGGTCCTTCTAGCGAATCTCCAGCAAGCAACCAATCTAGCCAGGGCCATGGTTACAAAGTTTGGTATGAGCAAAGAAGTGGGGCTTGTCACCCACAACTACGATGATAATGGGAAGAGTATGAGCACTGAAACGAGGCTTCTCATTGAGAAGGAAGTAAGAGAATTACTTGAAAGGGCTTACAACAATGCGAAAATGATTCTCACCACCCATATCAAAGAGCTTCATGCGCTTGCCAATGCATTGCTTGAGCAGGAAACGATGACCGGAAATCAGATTAAGGCCCTGCTTACCCATGTCAATTCTCAACAAACACAGCAAAAGAAACCTCAATTAGTCTCAGAGGAGAGTCCATCACAGTCCAATCCATCTCCTCCATCAAATCCGGCTGCT------GTTGCAGCAGCTGCAGCCGCTGCAGCTGCGGCCACTGCCGCAGCCAAAACCCAAGGCATTGCTCCTGTAGGATCTTAGCATGGTAACTTCTTGNTAGTTTTTATCAATCCATGTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432419" ref_strand="+" ref_description="SGN-E432419 [STM-57-C13]">
      <seq>tttttttttttgaagtttgtgacactcctaattttacaatatactcatgaaaaatatccaactcaaataggcaatgagtctgcagataattaaactaagatctgtaaaggtcagctaagtgggcttataacaccagaagaaagagatcagctaaaaatgacacacttgacaatatagatatgccatttatctgttactatttccgttgacctctaaactcacctccatacactaatcaccttcttgatagcaatgaaagggttgaaaccatgcatgagaatgatccactatatgcacatggattgataaaaactaacaagaagttaccatgctaagatcctacaggagcaatgccttgggttttggctgcggcagtggccgcagctgcagcggctgcagctgctgcaacagcagccggatttgatggaggagatggattggactgtgatggactctcctctgagactaattgaggtttcttttgctgtgtttgttgagaattgacatgggtaagcagggccttaatctgatttccggtcatcgtttcctgctcaagcaatgcattggcaagcgcatgaagctctttgatatgggtggtgagaatcattttcgcattgttgtaagccctttcaagtaattctcttacttccttctcaatgagaagcctcgtttcagtgctcatactcttcccattatcatcgtagttgtgggtgacaagccccacttctttgctcataccaaactttgtaaccatggccctggctagattggttgcttgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="44378" stop="43002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44086" g_stop="43302" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E432419" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44086" e_stop="43302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAGCTATGAAGTTTGTGACACTCCTAATTTTACAATATACTCATGAGAAGTGTCCAACTC-AATTGGCAATGAGTCTGCAGATAATCAAACTAAGATCTGTAAAGGTCAGCTAAGT-GGCTTACAACACCAGAAGAAAGAGGTCAGCTAAAAATGACACACTTGACAGTAT--TTATGACATTTATCTGCTACTATTTCCGTTGACCTCTAAAACTCACCTCCACACATTAATCACCTTCTTGATAGCAACGAAAGGGTGGAAAACATGCATGAGAATGATCCACTATATGCACATGGATTGATAAAAACTAGCAACAAGTTACCACACTAAGATCCTACAGGAGCAATGCCTTTGGTTTTGGCTGCGGCAGTGGCCGCAGCTGCAGCGGCTGCAGCTGCTGCTGCTGCTGCAGCAGCCGGATTTGATGGAGGAGATGGATTGGGCTGTGATGGACTCTCCTCTGAGACTAATTGAGGTTTCTTTTGCTGTGTTTGTTTAGAATTGACATGGGTAAGCAGGGCCTTAATCTGATTTCCGGTCATCGTTTCCTGCTCAAGCAATGCATTGGCAAGAGCATGAAGCTCTTTGATATGGGTGGTGAGAATCATTTTCGCATTGTTGTAAGCCCTTTCAAGTAATTCTCTTACTTCCTTCTCAATGAGAAGCCTCGTTTCAGTGCTCATACTCTTCCCATTATCATCGTAGTTGTGGGTAACAAGCCCCACTTCTTTGCTCATACCAAACTTTGTAACCATGGCCCTGGCTAGATTGGTTGCTTGCTGG</genome_strand>
        <mrna_strand>TTTTTTTTTTTGAAGTTTGTGACACTCCTAATTTTACAATATACTCATGAAAAATATCCAACTCAAATAGGCAATGAGTCTGCAGATAATTAAACTAAGATCTGTAAAGGTCAGCTAAGTGGGCTTATAACACCAGAAGAAAGAGATCAGCTAAAAATGACACACTTGACAATATAGATATGCCATTTATCTGTTACTATTTCCGTTGACCTCT-AAACTCACCTCCATACACTAATCACCTTCTTGATAGCAATGAAAGGGTTGAAACCATGCATGAGAATGATCCACTATATGCACATGGATTGATAAAAACTAACAAGAAGTTACCATGCTAAGATCCTACAGGAGCAATGCCTTGGGTTTTGGCTGCGGCAGTGGCCGCAGCTGCAGCGGCTGCA------GCTGCTGCAACAGCAGCCGGATTTGATGGAGGAGATGGATTGGACTGTGATGGACTCTCCTCTGAGACTAATTGAGGTTTCTTTTGCTGTGTTTGTTGAGAATTGACATGGGTAAGCAGGGCCTTAATCTGATTTCCGGTCATCGTTTCCTGCTCAAGCAATGCATTGGCAAGCGCATGAAGCTCTTTGATATGGGTGGTGAGAATCATTTTCGCATTGTTGTAAGCCCTTTCAAGTAATTCTCTTACTTCCTTCTCAATGAGAAGCCTCGTTTCAGTGCTCATACTCTTCCCATTATCATCGTAGTTGTGGGTGACAAGCCCCACTTCTTTGCTCATACCAAACTTTGTAACCATGGCCCTGGCTAGATTGGTTGCTTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611811" ref_strand="+" ref_description="SGN-E611811 [61567]">
      <seq>gaccggaaatcagattaaggccctgcttacccatgtcaattctcaacaaacacagcaaaagaaacctcaattagtctcagaggagagtccatcacagtccaatccatctcctccatcaaatccggctgctgttgcagcagcagcagctgcagccgctgcagctgcagccactgccgcagccaaaacccaaggcatttctcctgtaggatcttagcatggtaacttgttgctagtttttatcaatccatgtgcatatagtggatcattctcatgcatgctttcaaccctttcattgctatcaagaaggtgattagtgtatggaggtgagtttagaggtcaacggaaatagtaacagataaatggcatatctatattgtcaagtgtgtcatttttagctgatctcttccttctggtgttataagccacttagctgacctttacagatcttagtttaattatctgcagactcattgcctatttgagttggatatttttcacgagtatactgtaccaattaggagtgtcacaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="43245" stop="44371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43545" g_stop="44077" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E611811" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43545" e_stop="44077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCGGAAATCAGATTAAGGCCCTGCTTACCCATGTCAATTCTAAACAAACACAGCAAAAGAAACCTCAATTAGTCTCAGAGGAGAGTCCATCACAGCCCAATCCATCTCCTCCATCAAATCCGGCTGCTGCAGCAGCAGCAGCAGCTGCAGCCGCTGCAGCTGCGGCCACTGCCGCAGCCAAAACCAAAGGCATTGCTCCTGTAGGATCTTAGTGTGGTAACTTGTTGCTAGTTTTTATCAATCCATGTGCATATAGTGGATCATTCTCATGCATGTTTTCCACCCTTTCGTTGCTATCAAGAAGGTGATTAATGTGTGGAGGTGAGTTTTAGAGGTCAACGGAAATAGTAGCAGATAAATGTCATA--AATACTGTCAAGTGTGTCATTTTTAGCTGACCTCTTTCTTCTGGTGTTGTAAGCCACTTAGCTGACCTTTACAGATCTTAGTTTGATTATCTGCAGACTCATTGCC-AATTGAGTTGGACACTTCTCATGAGTATATTGTA-AAATTAGGAGTGTCACAAACTTCAT</genome_strand>
        <mrna_strand>GACCGGAAATCAGATTAAGGCCCTGCTTACCCATGTCAATTCTCAACAAACACAGCAAAAGAAACCTCAATTAGTCTCAGAGGAGAGTCCATCACAGTCCAATCCATCTCCTCCATCAAATCCGGCTGCTGTTGCAGCAGCAGCAGCTGCAGCCGCTGCAGCTGCAGCCACTGCCGCAGCCAAAACCCAAGGCATTTCTCCTGTAGGATCTTAGCATGGTAACTTGTTGCTAGTTTTTATCAATCCATGTGCATATAGTGGATCATTCTCATGCATGCTTTCAACCCTTTCATTGCTATCAAGAAGGTGATTAGTGTATGGAGGTGAG-TTTAGAGGTCAACGGAAATAGTAACAGATAAATGGCATATCTATATTGTCAAGTGTGTCATTTTTAGCTGATCTCTTCCTTCTGGTGTTATAAGCCACTTAGCTGACCTTTACAGATCTTAGTTTAATTATCTGCAGACTCATTGCCTATTTGAGTTGGATATTTTTCACGAGTATACTGTACCAATTAGGAGTGTCACAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614582" ref_strand="+" ref_description="SGN-E614582 [64371]">
      <seq>aagaaacctcaattagtctcagaggagagtccatcacagtccaatccatctcctccatcaaatccggctgctgttgcagcagctgcagccgctgcagctgcggccactgccgcagccaaaacccaaggcattgctcctgtaggatcttagcatggtaacttcttgttagtttttatcaatccatgtgcatatagtggatcattctcatgcatggtttcaaccctttcattgctatcaagaaggtgattagtgtatggaggtgagtttagaggtcaacggaaatagtaacagataaatggcatatctatattgtcaagtgtgtcatttttagctgatctctttcttctggtgttataagcccacttagctgacctttacagatcttagtttaattatctgcagactcattgcctatttgagtcggatatctttcatgagtatattgtaaaattaggagtgtcacaaacttcatcactttccaataatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="43371" stop="44395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43603" g_stop="44095" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E614582" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43603" e_stop="44095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACCTCAATTAGTCTCAGAGGAGAGTCCATCACAGCCCAATCCATCTCCTCCATCAAATCCGGCTGCTGCAGCAGCAGCAGCAGCTGCAGCCGCTGCAGCTGCGGCCACTGCCGCAGCCAAAACCAAAGGCATTGCTCCTGTAGGATCTTAGTGTGGTAACTTGTTGCTAGTTTTTATCAATCCATGTGCATATAGTGGATCATTCTCATGCATGTTTTCCACCCTTTCGTTGCTATCAAGAAGGTGATTAATGTGTGGAGGTGAGTTTTAGAGGTCAACGGAAATAGTAGCAGATAAATGTCATA--AATACTGTCAAGTGTGTCATTTTTAGCTGACCTCTTTCTTCTGGTGTTGTAAG-CCACTTAGCTGACCTTTACAGATCTTAGTTTGATTATCTGCAGACTCATTGCC-AATTGAGTTGGACACTTCTCATGAGTATATTGTAAAATTAGGAGTGTCACAAACTTCATAGCTTTCCAATAATGCAA</genome_strand>
        <mrna_strand>AAGAAACCTCAATTAGTCTCAGAGGAGAGTCCATCACAGTCCAATCCATCTCCTCCATCAAATCCGGCTGCTGTTGCAGCAG------CTGCAGCCGCTGCAGCTGCGGCCACTGCCGCAGCCAAAACCCAAGGCATTGCTCCTGTAGGATCTTAGCATGGTAACTTCTTGTTAGTTTTTATCAATCCATGTGCATATAGTGGATCATTCTCATGCATGGTTTCAACCCTTTCATTGCTATCAAGAAGGTGATTAGTGTATGGAGGTGAG-TTTAGAGGTCAACGGAAATAGTAACAGATAAATGGCATATCTATATTGTCAAGTGTGTCATTTTTAGCTGATCTCTTTCTTCTGGTGTTATAAGCCCACTTAGCTGACCTTTACAGATCTTAGTTTAATTATCTGCAGACTCATTGCCTATTTGAGTCGGATATCTTTCATGAGTATATTGTAAAATTAGGAGTGTCACAAACTTCATCACTTTCCAATAATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346419" ref_strand="+" ref_description="SGN-E346419 [cTOF-23-M8]">
      <seq>atatgaagagaggatatataaatgatgtgaaacttgaagagaccaaaagctttgttcagatggctccgtccccttcaatccctaatctgcaagaaattcggcgtaagtgtgtgacagtacataacagtcatggtgagaaactggtgggcgtgctacatgaaacaaattccctggagcttgtaattatctgccacggtttcaaatcatcgaaggatcggattcccatggtgaatcttgctgctgcttatgagaaagaaggaatcagtgccttccgctttgactttgcaggaaatggtgaaagcgaaggttcctttcagtatggtaactaccgcagagaagctgatgatcttcgtgccatagtcgagcacttccataaggaggagcgtttcatagcagcaatagttggtcatagcaaaggaggaaatgttgtcctcttgtatgcttcgaactacaaggatgtacaaactgtcatcaatatttctgggcgcttcaatcttgagagagggatagagcatcgcttgggcagagacttcaaagagaagataaagcataacggttttattgatgttagaaatagaaaaggaaggttcaagtatcgtgtcactgangaaagtttgatggaccgtctaacaactgatactcgtggatcatgtcaaagtatcaccaataactgcagggtattgacggtccatggttcaatggatgaaatggtgcccagttgagatgctatggaatttgccaagaatgtgtcaaatcataaattacaaatattgaaggagctgatcatgaattcactttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="66380" stop="73878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66680" g_stop="66707" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66708" i_stop="66900" i_length="193">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66901" g_stop="66965" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="93" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66966" i_stop="68223" i_length="1258">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68224" g_stop="68342" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="212" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68343" i_stop="69172" i_length="830">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69173" g_stop="69255" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="295" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69256" i_stop="69902" i_length="647">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69903" g_stop="70024" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="417" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70025" i_stop="71118" i_length="1094">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71119" g_stop="71283" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="582" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71284" i_stop="73152" i_length="1869">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73153" g_stop="73246" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="676" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="73247" i_stop="73451" i_length="205">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="73452" g_stop="73578" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="802" r_length="126" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E346419" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66680" e_stop="66707"/>
          <exon e_start="66901" e_stop="66965"/>
          <exon e_start="68224" e_stop="68342"/>
          <exon e_start="69173" e_stop="69255"/>
          <exon e_start="69903" e_stop="70024"/>
          <exon e_start="71119" e_stop="71283"/>
          <exon e_start="73153" e_stop="73246"/>
          <exon e_start="73452" e_stop="73578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGAAGAGAGGATATATAAATGATGTGTACGACCTCTTCTTTCCTTTTGTTGTATTTAGGATCAAATTAATCCAATATCATAATATTTATTTCATATAAAAATAAAAAATAATTTATTTTGTATTATTAGATTTTTTTAAGGATCATTTTGTGAAACATTATATTATTAGAATTTATTTATTACCTATCTTACAAGCATAATAATCTCTTCCTTACTAGGAAACTTGAAGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAGGTATTGAATCTTTACTATGCAAAGGAACATATATTGAATCTTTTAGATCATCAAGATTCAAGAAGAGTTCGTGTTATGTGATTTTTCTGGGGTTTCTAATATTTTACTGAATTTGATCGTTTTTAAATTGGATTTTCTGAGAATAGAATTTTGGGTTTTTTCCATTGTTGTATTTGCTCCGTTTCATATATATATATATATATATATATATATAAACCACTCGGTTTCAGTTCACACTATCAAGTTTTAGTATTGTATGGTGAAAATCGTAGCACCCAATTTGATTTCTATCGATGATAGTACTATGTTTCAATTCAAATGTTACCATACTGCAAAAGCTAGCTACTAATGTAGGAGAGCCCAACATTATATAAGCTCCCCATTAATCATGGTTTTGATTCTTCAGGAAAAGAATTTATTTTTATTGTATGATTGGCTGAAATTTTGCATTGTATAGTTGTCATACAACCCCAAAAAAGAAAGAGAAATATCTAGGTGGCCCTTTTTACACGGACAACGGTTGAATCAAATATGAAATGCCTAAAGAAATTTCTCTCCGCTTATGTTTAGATGACCTTATGGTAATTGGATAGGCCATTGTGACTTGATAGTTCTTATTAATGTAGGTTCCAATCATTTTTAGTCATAAGGAAGAAAATATCAACACTATATGTGAGACAAGGCAATAAAAAGGAAGTCTGTTGTCTCGAATGACAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCCAGCCCCACATTAAGCAAAGTGAAGCCCGGTATCTAAATGGAGAAGGATAGAGGGGCGGGCCCATTAGCCACCGAGTTTAGAAGGGGCTGTGGTTGGTCCAAAGGGTGGTGGGTCACAGGCGGATTTCTCGGTTATAAAAAAAAGAAGTCTTTTGCTATTTGATAATGTATTTAAGTTTCACATTAGACTATATTTAGGCATAACACGATAATGATCTAACTGTAGACCTTTTTTTAAAAAAGAAAACGTAATATTTAAGTCTTATACAGTAGTTCAATAGCAGTTAATGGATGTCAATCAATGATACTGTAGTTTTGATGACCTTTCAACTTTCTATGATGCTGTAGTATTGTGATTTGTGCATGAGTTTTTATAACAGTTAATGAATGTGAATCACGGATGCTGTAGTTTAGTTATCCTTGCAATTATCTATGTCCCATTGACTGTGTTGGATGATACCGATCTTTTGTTTTTATCACCCTCCCTTTTTTCTTTTTCTTCCATAGAAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAGGTTTGTCACAATAATTTGAACACGTAGGAATTACAGCTCCTAATTATGTGGCTTATTCATATAATCATTTGTTTGATTTTTGCTGCATGTTGTTCTTGGTCGATGTATAATTTTTTTTATGAGAAGTAGATATTCTTATATAAAATATGGTTTATTGCTTTTTCTATGCAGCAACATGCAAGCTTAGCTTGAATTTGGTATTAAATTCTTTTAGCAACTTCTTTTTGCTATAACTGAGTGTAGCGGAATTTGTATTGAGAGATACATTCTCTTGCTTCTATATCCATCCTCCCCTCCTCCCAACCCAACTACCATACCCCAAGAAAAAACATAGGAAGGTTTTTTTACTTTTTTTGCACTACCTGTAAGCATTTTGAATAAGAATTAAATCGCTGTTTTAAATGTCTGAGTACTCTCATCATAACTTCCATCCTTCATTGAAGAACAAATGAATTGCACCCTGAGAAATATGTGGTGCATTAGTGCATCTACTTGTCCTTGTATATGCTACTACTCCTATTGTTTGCTATATTATGTTTTACTATTGTTGAATCTAGTCTGCTGACATGCTTCCTTCCTATCTAGAAAGATATTATTATTGCTTATTTACTAAGATAAAATTCATTTAGGGATTCTTCTAGAGACTGGACATACGGGGCAAAGGCCTAAATGGACTGAATATTTTGCTTTCTACTACATTATGTGATTCAGTCCAGCAACATCCAACTCAGTGGCTGTTCAACTGTTTTTTTGTCGTTTTATTGTGCAATTTATGGACATTGATTGTGATTGACTAATAATCTTCTTTATCAATTTTGATTTAACTTCAGGATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGGGTATGTTCAAACACAAAAGCCAATATAGAAACCTCTAGATTAGCAAATAAATGGAAAGGGAGTGCTGCTCCCAGTGAACTTTGTTCTTCTCGTATTCTTGATCTGTGAACTTAGATTTACTCAAATGAATGGTTATTGAATTTTCTCCTTTTTGGGAAGGTGAGGAATATCTACTTGGAGTATTATAAACTTGCAAATTCTTTAGGTTATTGGGAGAACTAAATATATATGTATCTGGATTGCTGCTGCATATGCGTATGGACCAAAATTACATTTATTTAACTTCGATACTTTGTTTTGTTCTCTTCTTAACTTTTTCCTTTTCACTTGCAAGTATTAGGAGCTCCTCGCATACTTGTCTAGTGTTGTTTCATATACACTATATTGGCCTTAAAGTAGCTCTAGTTGATTCTTTTGACTTCAATGAACAATTTACTGCTTCCAGCTTGTTGAATTGGAATCTTACAGATAGGGTTCTGTCAGATGGATCTCCTCTTCAAGTTTTCTCAGGATTAAACCTGACTTACATTATGCATAGCATTATATTCTCTATATGGAGATGATAAATTTCTAATTTCTAAATATTATGAACACAGTAAAAATAATTGAAATGAACTACTGAAAACTCACTTTGTTTTTGGTGTCAGTGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAGGTTTAGCCTTTGAAAGCTAACTTATGTCTGATCTTGGGAAGATACGCCGTGTTTCTCTTTTCCTTTCCCCATTCCTAGTTCTCTTGCTAGGGGTGTGAATGGTGGTGTTTGGAGGATTACAGTACCACTATACTGGAACAGTACATGCAGTCTAACTGATGTTTCGACCAGTAGCAATGCCACTTTTCGCTGCTGTTTGATTCGAGTCATTGATAGATAGAAGCTTTCTTGTCATTACTGCTTATCATACTTGATGCGTTCACGTAGGAATTTTACATTTTGTCCTTGCAATTTATGTTAAATCTGCTGAGTAAGTTATGTTTGAGTGCATAAATGAATACCCTTTCTTTGTTAGTAGGTAAGTTTTTCTCATTAGGTCATCAATATTTTCCTGGATTGGGATTCGTAAATATGTTAATAGATTCTTGATCTGTATCTTCCATTTTTGGGTGTGTGTGTTATGTCTTTGTTGGGGGTTCTTGTTTTGGTTCAGTACTTCAGGGATTATTAACAGTACTTTTTGCAAGAATATGTGTGGGTTGAAAATTGTGTGTTCATACTCGAACTTTTGAGTGTTCTTATTTCATTATGAGCTTTTTAAACATTGAAGAAGGTTTTCCTTTTCAAGTAAATAGTTCTTTGTTAAAATCAAATTATGATTGCTGATTTAGCAATTTTTGGTTTACTGTTATGTTCATTTTAAATTTAACTTTAAAAGGTAGCAGTAAATGTTGACAACCTTCATGTTTTACCCCAGCATTATATGGTCCTGCTAACTGCTGATGTTTATGATGGTATTTTCTCTTGTCCATATTCTACTTAATTTCTTATCAGTAAGAGTTGCACAAGTACTTTGAATTGTCATGATAGTGATGTATTGATCTCACAGGAGTCGGGACACAGTCAAATTTACAAGGAAAGATAGTATCTTCTTGTGCTATAGTTTGCATTGTATCCTCTCTTCACATAATCAACACATACTGCACCTCAAATTAAGTTATAGTAACTATCTCCAGCTTATTTTTCTGCATGCATATCGTATGACCTCTAATGTCCCCGCTGAAGTGTATTTTTTTGTGATAAATTACCTACAGGAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAGGTATGCTTAATGGACTTCTTTTCCTTTTGTGTTCTTAGTAATCGTCATATTTCTGTCCCATTTTCTGTTGGATGTTCTTTGGTATGGATCATTGGATGTTTCACACTTCTAAAACTTCTAAAAAGCTGCTAAAAAATGACTGACCAAAAAGCGAGGGACAACGTCGCTCCAAAACATGATGCCATTTGCAACGTTATCCGTCATTTTTATTATTTTCTTAGTTTTTTGTACAAATGATGGACAATGACTCTATGTCCGTCGCTTTTTTTTTTGGGCGGATTTTTGCGCCAAATATACATATAATTAATAATTATTTATTTAATATACGTAGAGACGCCATCTATTGCTTTTAATTTAATATAATTATTTTTAAATTAGTAAATAACTACGTCATCCGTCATACGTAAAACGATGGATGACGTGGTTATTTAATTAAAAACGACGGACGATGTCTCTTCGTATATGAAATAAATAATTACTAATTATATATACATATAAATATATATGGCTCAAAAAAGCGATAGACATAGATTCACTGTCCGTCACTTTTTGTAAAAAATAAGAAAAACGACGTACAGCGTTGCAAATGGTGTCGTTTTTTGGAGCAACACCGCCTGTCACTTTTTGGTCTGTAGATTTTTAGCAGGTTTTTAGTAGTGTCAGTGGATGATAGTAAATTAAACCACTTAGGGAGGTAGATGACATTGTTAGATGACTTGGTGTGGCTGGTTTAGCTAATGGAAATCATTTCGTACAGTTGATTAGACAAGATATGGACTGTAAATGTGAGGTACAGCACAAGTTTGGTTGATGAAAATGACATAATATTATGCTTCAATAGATAAGTTCTGATGATTACAAGTCTGGAACTAAAGACTTGGTAAATATGGAATGTGGCATTCTTTTCTAAATAAACTAAAGCAGAATGTGAGACACATAAATTGAAACGGGGGAACACATCAATATAAAAATTTAAAAATGTAACAAATATGAAGGGGCAAAACCTTAGTATAATGAAGAATCACACTCCATTCACTGAGTGAGTTGCTTCGAAATAGTGTTATTATACTTCAAGCCCATGCCCAGCACATATTTCAGACGTTGCTCTGCATCAACTATCGTGAATATGTCGCTTCATTCTTATTCATAATTATTTGATCCTATATTTAAATGATACCCGATGATCTTTCGCTTCCGTTCCCAAGAAATATAAACATTCTTGCAGCAACTCCTTGCTTCTTTTTTTTTTGTATGTTAAATGAAGTTTATGCGTTCTCAATTAACTCGAGTTTTAACTTTGTAATTCACTTCAAATTTTTTGTTGTAATTTATATTTATTACTAGTCTCCACAAAATAACGTAAAAGGGAGTGTGTTTTGGTGGAAAAAAGGAAAAACTTATTTTGAGGCTTTTATTATGAAATAAAAAGAGCAACAGTAAAACCCCTTTGTCATGTCTGGTTTTGTCCAATTCGCCCCTTCCCATGCTAGTGGGTTTGCCTCAGTTCTGCCTTAGAGTCTAGGCGAATCTATGTGCAAAATTCTGGGTACATCATTGCACCAAAAGAGGCATAACAAAGATGAATTCTAGGTAAACCTTGTGCTGTTGATCCTATGCATTCTCTAATTTGTGGTTGTCTCCTCCACCGTTCTTAGGTTGAGAGTGATCAGTTCTATTTTCTATTCTGATATCCTTATCAAATATCCTAGACTTGACTGCATGTAGGACACCTGTGGGAGAAAAACAACGAGAAAGTCTAATTTAACATACCCACGAATGATATGGTAACCCAATTCCTTTTGTCTTGATAGATTTTGAGATTGCCTTTAGTTGTTAGTCCTACATACTGCCATCTCTTGCTATTTGCAGGAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAGGTCAGGAATTGATATTTTGATTATTACTAAGTGATTCTTAAGTTTTCACATCATATCTACTGTATGAATACAACCTTTTCAACAGTAGGGCACTAATTTGTTTTCTGTGCCTATTGTGTGCACGTCTCAGTATGAGTCCACTTTTGCTTGTGAATGGTTATTTGTTCATCAACTGTGTATTAAACCTGCTGGGTTAATATAATAGGGTATTGACGGTCCATGGTTCAATGGATGAAATGGTG-CCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCAT</genome_strand>
        <mrna_strand>ATATGAAGAGAGGATATATAAATGATGT.................................................................................................................................................................................................GAAACTTGAAGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAATGTTGTCCTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTCAAGTATCGTGTCACTGANGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAG.............................................................................................................................................................................................................GGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCCAGTTG-AGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAA-TATTGAAGGAGCTGATCATGAATTCACTTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348879" ref_strand="+" ref_description="SGN-E348879 [cTOF-29-P20]">
      <seq>atatgaagagaggatatataaatgatgtgaaacttgaagagaccaaaagctttgttcagatggctccgtccccttcaatccctaatctgcaagaaattcggcgtaagtgtgtgacagtacataacagtcatggtgagaaactggtgggcgtgctacatgaaacaaattccctggagcttgtaattatctgccacggtttcaaatcatcgaaggatcggattcccatggtgaatcttgctgctgcttatgagaaagaaggaatcagtgccttccgctttgactttgcaggaaatggtgaaagcgaaggttcctttcagtatggtaactaccgcagagaagctgatgatcttcgtgccatagtcgagcacttccataaggaggagcgtttcatagcagcaatagttggtcatagcaaaggaggaaatgttgtactcttgtatgcttcgaactacaaggatgtacaaactgtcatcaatatttctgggcgcttcaatcttgagagagggatagagcatcgcttgggcagagacttcaaagagaagataaagcataacggttttattgatgttagaaatagaaaaggaaggttcaagtatcgtgtcactgaggaaagtttgatggaccgtctaacaactgatactcgtggatcatgtcaaagtatcaccaataactgcagggtattgacggtccatggttcaatggatgaaatggtgccagttgaagatgctatggaatttgcaagaatgtgtcaaatcataaattacaattattgaaggagctgatcatgaattcactttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="66380" stop="73877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66680" g_stop="66707" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66708" i_stop="66900" i_length="193">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66901" g_stop="66965" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="93" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66966" i_stop="68223" i_length="1258">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68224" g_stop="68342" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="212" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68343" i_stop="69172" i_length="830">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69173" g_stop="69255" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="295" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69256" i_stop="69902" i_length="647">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69903" g_stop="70024" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="417" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70025" i_stop="71118" i_length="1094">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71119" g_stop="71283" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="582" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71284" i_stop="73152" i_length="1869">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73153" g_stop="73246" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="676" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="73247" i_stop="73451" i_length="205">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="73452" g_stop="73577" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="800" r_length="124" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E348879" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66680" e_stop="66707"/>
          <exon e_start="66901" e_stop="66965"/>
          <exon e_start="68224" e_stop="68342"/>
          <exon e_start="69173" e_stop="69255"/>
          <exon e_start="69903" e_stop="70024"/>
          <exon e_start="71119" e_stop="71283"/>
          <exon e_start="73153" e_stop="73246"/>
          <exon e_start="73452" e_stop="73577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGAAGAGAGGATATATAAATGATGTGTACGACCTCTTCTTTCCTTTTGTTGTATTTAGGATCAAATTAATCCAATATCATAATATTTATTTCATATAAAAATAAAAAATAATTTATTTTGTATTATTAGATTTTTTTAAGGATCATTTTGTGAAACATTATATTATTAGAATTTATTTATTACCTATCTTACAAGCATAATAATCTCTTCCTTACTAGGAAACTTGAAGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAGGTATTGAATCTTTACTATGCAAAGGAACATATATTGAATCTTTTAGATCATCAAGATTCAAGAAGAGTTCGTGTTATGTGATTTTTCTGGGGTTTCTAATATTTTACTGAATTTGATCGTTTTTAAATTGGATTTTCTGAGAATAGAATTTTGGGTTTTTTCCATTGTTGTATTTGCTCCGTTTCATATATATATATATATATATATATATATAAACCACTCGGTTTCAGTTCACACTATCAAGTTTTAGTATTGTATGGTGAAAATCGTAGCACCCAATTTGATTTCTATCGATGATAGTACTATGTTTCAATTCAAATGTTACCATACTGCAAAAGCTAGCTACTAATGTAGGAGAGCCCAACATTATATAAGCTCCCCATTAATCATGGTTTTGATTCTTCAGGAAAAGAATTTATTTTTATTGTATGATTGGCTGAAATTTTGCATTGTATAGTTGTCATACAACCCCAAAAAAGAAAGAGAAATATCTAGGTGGCCCTTTTTACACGGACAACGGTTGAATCAAATATGAAATGCCTAAAGAAATTTCTCTCCGCTTATGTTTAGATGACCTTATGGTAATTGGATAGGCCATTGTGACTTGATAGTTCTTATTAATGTAGGTTCCAATCATTTTTAGTCATAAGGAAGAAAATATCAACACTATATGTGAGACAAGGCAATAAAAAGGAAGTCTGTTGTCTCGAATGACAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCCAGCCCCACATTAAGCAAAGTGAAGCCCGGTATCTAAATGGAGAAGGATAGAGGGGCGGGCCCATTAGCCACCGAGTTTAGAAGGGGCTGTGGTTGGTCCAAAGGGTGGTGGGTCACAGGCGGATTTCTCGGTTATAAAAAAAAGAAGTCTTTTGCTATTTGATAATGTATTTAAGTTTCACATTAGACTATATTTAGGCATAACACGATAATGATCTAACTGTAGACCTTTTTTTAAAAAAGAAAACGTAATATTTAAGTCTTATACAGTAGTTCAATAGCAGTTAATGGATGTCAATCAATGATACTGTAGTTTTGATGACCTTTCAACTTTCTATGATGCTGTAGTATTGTGATTTGTGCATGAGTTTTTATAACAGTTAATGAATGTGAATCACGGATGCTGTAGTTTAGTTATCCTTGCAATTATCTATGTCCCATTGACTGTGTTGGATGATACCGATCTTTTGTTTTTATCACCCTCCCTTTTTTCTTTTTCTTCCATAGAAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAGGTTTGTCACAATAATTTGAACACGTAGGAATTACAGCTCCTAATTATGTGGCTTATTCATATAATCATTTGTTTGATTTTTGCTGCATGTTGTTCTTGGTCGATGTATAATTTTTTTTATGAGAAGTAGATATTCTTATATAAAATATGGTTTATTGCTTTTTCTATGCAGCAACATGCAAGCTTAGCTTGAATTTGGTATTAAATTCTTTTAGCAACTTCTTTTTGCTATAACTGAGTGTAGCGGAATTTGTATTGAGAGATACATTCTCTTGCTTCTATATCCATCCTCCCCTCCTCCCAACCCAACTACCATACCCCAAGAAAAAACATAGGAAGGTTTTTTTACTTTTTTTGCACTACCTGTAAGCATTTTGAATAAGAATTAAATCGCTGTTTTAAATGTCTGAGTACTCTCATCATAACTTCCATCCTTCATTGAAGAACAAATGAATTGCACCCTGAGAAATATGTGGTGCATTAGTGCATCTACTTGTCCTTGTATATGCTACTACTCCTATTGTTTGCTATATTATGTTTTACTATTGTTGAATCTAGTCTGCTGACATGCTTCCTTCCTATCTAGAAAGATATTATTATTGCTTATTTACTAAGATAAAATTCATTTAGGGATTCTTCTAGAGACTGGACATACGGGGCAAAGGCCTAAATGGACTGAATATTTTGCTTTCTACTACATTATGTGATTCAGTCCAGCAACATCCAACTCAGTGGCTGTTCAACTGTTTTTTTGTCGTTTTATTGTGCAATTTATGGACATTGATTGTGATTGACTAATAATCTTCTTTATCAATTTTGATTTAACTTCAGGATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGGGTATGTTCAAACACAAAAGCCAATATAGAAACCTCTAGATTAGCAAATAAATGGAAAGGGAGTGCTGCTCCCAGTGAACTTTGTTCTTCTCGTATTCTTGATCTGTGAACTTAGATTTACTCAAATGAATGGTTATTGAATTTTCTCCTTTTTGGGAAGGTGAGGAATATCTACTTGGAGTATTATAAACTTGCAAATTCTTTAGGTTATTGGGAGAACTAAATATATATGTATCTGGATTGCTGCTGCATATGCGTATGGACCAAAATTACATTTATTTAACTTCGATACTTTGTTTTGTTCTCTTCTTAACTTTTTCCTTTTCACTTGCAAGTATTAGGAGCTCCTCGCATACTTGTCTAGTGTTGTTTCATATACACTATATTGGCCTTAAAGTAGCTCTAGTTGATTCTTTTGACTTCAATGAACAATTTACTGCTTCCAGCTTGTTGAATTGGAATCTTACAGATAGGGTTCTGTCAGATGGATCTCCTCTTCAAGTTTTCTCAGGATTAAACCTGACTTACATTATGCATAGCATTATATTCTCTATATGGAGATGATAAATTTCTAATTTCTAAATATTATGAACACAGTAAAAATAATTGAAATGAACTACTGAAAACTCACTTTGTTTTTGGTGTCAGTGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAGGTTTAGCCTTTGAAAGCTAACTTATGTCTGATCTTGGGAAGATACGCCGTGTTTCTCTTTTCCTTTCCCCATTCCTAGTTCTCTTGCTAGGGGTGTGAATGGTGGTGTTTGGAGGATTACAGTACCACTATACTGGAACAGTACATGCAGTCTAACTGATGTTTCGACCAGTAGCAATGCCACTTTTCGCTGCTGTTTGATTCGAGTCATTGATAGATAGAAGCTTTCTTGTCATTACTGCTTATCATACTTGATGCGTTCACGTAGGAATTTTACATTTTGTCCTTGCAATTTATGTTAAATCTGCTGAGTAAGTTATGTTTGAGTGCATAAATGAATACCCTTTCTTTGTTAGTAGGTAAGTTTTTCTCATTAGGTCATCAATATTTTCCTGGATTGGGATTCGTAAATATGTTAATAGATTCTTGATCTGTATCTTCCATTTTTGGGTGTGTGTGTTATGTCTTTGTTGGGGGTTCTTGTTTTGGTTCAGTACTTCAGGGATTATTAACAGTACTTTTTGCAAGAATATGTGTGGGTTGAAAATTGTGTGTTCATACTCGAACTTTTGAGTGTTCTTATTTCATTATGAGCTTTTTAAACATTGAAGAAGGTTTTCCTTTTCAAGTAAATAGTTCTTTGTTAAAATCAAATTATGATTGCTGATTTAGCAATTTTTGGTTTACTGTTATGTTCATTTTAAATTTAACTTTAAAAGGTAGCAGTAAATGTTGACAACCTTCATGTTTTACCCCAGCATTATATGGTCCTGCTAACTGCTGATGTTTATGATGGTATTTTCTCTTGTCCATATTCTACTTAATTTCTTATCAGTAAGAGTTGCACAAGTACTTTGAATTGTCATGATAGTGATGTATTGATCTCACAGGAGTCGGGACACAGTCAAATTTACAAGGAAAGATAGTATCTTCTTGTGCTATAGTTTGCATTGTATCCTCTCTTCACATAATCAACACATACTGCACCTCAAATTAAGTTATAGTAACTATCTCCAGCTTATTTTTCTGCATGCATATCGTATGACCTCTAATGTCCCCGCTGAAGTGTATTTTTTTGTGATAAATTACCTACAGGAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAGGTATGCTTAATGGACTTCTTTTCCTTTTGTGTTCTTAGTAATCGTCATATTTCTGTCCCATTTTCTGTTGGATGTTCTTTGGTATGGATCATTGGATGTTTCACACTTCTAAAACTTCTAAAAAGCTGCTAAAAAATGACTGACCAAAAAGCGAGGGACAACGTCGCTCCAAAACATGATGCCATTTGCAACGTTATCCGTCATTTTTATTATTTTCTTAGTTTTTTGTACAAATGATGGACAATGACTCTATGTCCGTCGCTTTTTTTTTTGGGCGGATTTTTGCGCCAAATATACATATAATTAATAATTATTTATTTAATATACGTAGAGACGCCATCTATTGCTTTTAATTTAATATAATTATTTTTAAATTAGTAAATAACTACGTCATCCGTCATACGTAAAACGATGGATGACGTGGTTATTTAATTAAAAACGACGGACGATGTCTCTTCGTATATGAAATAAATAATTACTAATTATATATACATATAAATATATATGGCTCAAAAAAGCGATAGACATAGATTCACTGTCCGTCACTTTTTGTAAAAAATAAGAAAAACGACGTACAGCGTTGCAAATGGTGTCGTTTTTTGGAGCAACACCGCCTGTCACTTTTTGGTCTGTAGATTTTTAGCAGGTTTTTAGTAGTGTCAGTGGATGATAGTAAATTAAACCACTTAGGGAGGTAGATGACATTGTTAGATGACTTGGTGTGGCTGGTTTAGCTAATGGAAATCATTTCGTACAGTTGATTAGACAAGATATGGACTGTAAATGTGAGGTACAGCACAAGTTTGGTTGATGAAAATGACATAATATTATGCTTCAATAGATAAGTTCTGATGATTACAAGTCTGGAACTAAAGACTTGGTAAATATGGAATGTGGCATTCTTTTCTAAATAAACTAAAGCAGAATGTGAGACACATAAATTGAAACGGGGGAACACATCAATATAAAAATTTAAAAATGTAACAAATATGAAGGGGCAAAACCTTAGTATAATGAAGAATCACACTCCATTCACTGAGTGAGTTGCTTCGAAATAGTGTTATTATACTTCAAGCCCATGCCCAGCACATATTTCAGACGTTGCTCTGCATCAACTATCGTGAATATGTCGCTTCATTCTTATTCATAATTATTTGATCCTATATTTAAATGATACCCGATGATCTTTCGCTTCCGTTCCCAAGAAATATAAACATTCTTGCAGCAACTCCTTGCTTCTTTTTTTTTTGTATGTTAAATGAAGTTTATGCGTTCTCAATTAACTCGAGTTTTAACTTTGTAATTCACTTCAAATTTTTTGTTGTAATTTATATTTATTACTAGTCTCCACAAAATAACGTAAAAGGGAGTGTGTTTTGGTGGAAAAAAGGAAAAACTTATTTTGAGGCTTTTATTATGAAATAAAAAGAGCAACAGTAAAACCCCTTTGTCATGTCTGGTTTTGTCCAATTCGCCCCTTCCCATGCTAGTGGGTTTGCCTCAGTTCTGCCTTAGAGTCTAGGCGAATCTATGTGCAAAATTCTGGGTACATCATTGCACCAAAAGAGGCATAACAAAGATGAATTCTAGGTAAACCTTGTGCTGTTGATCCTATGCATTCTCTAATTTGTGGTTGTCTCCTCCACCGTTCTTAGGTTGAGAGTGATCAGTTCTATTTTCTATTCTGATATCCTTATCAAATATCCTAGACTTGACTGCATGTAGGACACCTGTGGGAGAAAAACAACGAGAAAGTCTAATTTAACATACCCACGAATGATATGGTAACCCAATTCCTTTTGTCTTGATAGATTTTGAGATTGCCTTTAGTTGTTAGTCCTACATACTGCCATCTCTTGCTATTTGCAGGAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAGGTCAGGAATTGATATTTTGATTATTACTAAGTGATTCTTAAGTTTTCACATCATATCTACTGTATGAATACAACCTTTTCAACAGTAGGGCACTAATTTGTTTTCTGTGCCTATTGTGTGCACGTCTCAGTATGAGTCCACTTTTGCTTGTGAATGGTTATTTGTTCATCAACTGTGTATTAAACCTGCTGGGTTAATATAATAGGGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCA</genome_strand>
        <mrna_strand>ATATGAAGAGAGGATATATAAATGATGT.................................................................................................................................................................................................GAAACTTGAAGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAG.............................................................................................................................................................................................................GGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTG-CAAGAATGTGTCAAATCATAAATTAC-AATTATTGAAGGAGCTGATCATGAATTCACTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246608" ref_strand="+" ref_description="SGN-E246608 [cLEF-45-H8]">
      <seq>tctcttccttactaggaaacttgaagagaccaaaagctttgttcagatggctccgtccccttcaatccctaatctgcaagaaattcggcgtaagtgtgtgacagtacataacagtcatggtgagaaactggtgggcgtgctacatgaaacaaattccctggagcttgtaattatctgccacggtttcaaatcatcgaaggatcggattcccatggtgaatcttgctgctgcttatgagaaagaaggaatcagtgcctttcgctttgactttgcaggaaatggtgaaagcgaaggttcctttcattatggtaactaccgcagagaagctgatgatcttcgtgccatagtcgagcacttccataaggaggagcgtttcatagcagcaatagttggtcatagcaaaggaggaaatgttgtactcttgtatgcttcgaactacaaggatgtacaaactgtcatcaatatttctgggcgcttcaatcttgagagagggatagagcatcgcttgggcagagacttcaaagagaagataaagcataacggttttattgatgttagaaataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="66586" stop="71579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66886" g_stop="66965" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66966" i_stop="68223" i_length="1258">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68224" g_stop="68342" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="199" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68343" i_stop="69172" i_length="830">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69173" g_stop="69255" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="282" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69256" i_stop="69902" i_length="647">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69903" g_stop="70024" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="404" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70025" i_stop="71118" i_length="1094">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71119" g_stop="71279" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="565" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E246608" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66886" e_stop="66965"/>
          <exon e_start="68224" e_stop="68342"/>
          <exon e_start="69173" e_stop="69255"/>
          <exon e_start="69903" e_stop="70024"/>
          <exon e_start="71119" e_stop="71279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTTACTAGGAAACTTGAAGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAGGTATTGAATCTTTACTATGCAAAGGAACATATATTGAATCTTTTAGATCATCAAGATTCAAGAAGAGTTCGTGTTATGTGATTTTTCTGGGGTTTCTAATATTTTACTGAATTTGATCGTTTTTAAATTGGATTTTCTGAGAATAGAATTTTGGGTTTTTTCCATTGTTGTATTTGCTCCGTTTCATATATATATATATATATATATATATATAAACCACTCGGTTTCAGTTCACACTATCAAGTTTTAGTATTGTATGGTGAAAATCGTAGCACCCAATTTGATTTCTATCGATGATAGTACTATGTTTCAATTCAAATGTTACCATACTGCAAAAGCTAGCTACTAATGTAGGAGAGCCCAACATTATATAAGCTCCCCATTAATCATGGTTTTGATTCTTCAGGAAAAGAATTTATTTTTATTGTATGATTGGCTGAAATTTTGCATTGTATAGTTGTCATACAACCCCAAAAAAGAAAGAGAAATATCTAGGTGGCCCTTTTTACACGGACAACGGTTGAATCAAATATGAAATGCCTAAAGAAATTTCTCTCCGCTTATGTTTAGATGACCTTATGGTAATTGGATAGGCCATTGTGACTTGATAGTTCTTATTAATGTAGGTTCCAATCATTTTTAGTCATAAGGAAGAAAATATCAACACTATATGTGAGACAAGGCAATAAAAAGGAAGTCTGTTGTCTCGAATGACAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCCAGCCCCACATTAAGCAAAGTGAAGCCCGGTATCTAAATGGAGAAGGATAGAGGGGCGGGCCCATTAGCCACCGAGTTTAGAAGGGGCTGTGGTTGGTCCAAAGGGTGGTGGGTCACAGGCGGATTTCTCGGTTATAAAAAAAAGAAGTCTTTTGCTATTTGATAATGTATTTAAGTTTCACATTAGACTATATTTAGGCATAACACGATAATGATCTAACTGTAGACCTTTTTTTAAAAAAGAAAACGTAATATTTAAGTCTTATACAGTAGTTCAATAGCAGTTAATGGATGTCAATCAATGATACTGTAGTTTTGATGACCTTTCAACTTTCTATGATGCTGTAGTATTGTGATTTGTGCATGAGTTTTTATAACAGTTAATGAATGTGAATCACGGATGCTGTAGTTTAGTTATCCTTGCAATTATCTATGTCCCATTGACTGTGTTGGATGATACCGATCTTTTGTTTTTATCACCCTCCCTTTTTTCTTTTTCTTCCATAGAAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAGGTTTGTCACAATAATTTGAACACGTAGGAATTACAGCTCCTAATTATGTGGCTTATTCATATAATCATTTGTTTGATTTTTGCTGCATGTTGTTCTTGGTCGATGTATAATTTTTTTTATGAGAAGTAGATATTCTTATATAAAATATGGTTTATTGCTTTTTCTATGCAGCAACATGCAAGCTTAGCTTGAATTTGGTATTAAATTCTTTTAGCAACTTCTTTTTGCTATAACTGAGTGTAGCGGAATTTGTATTGAGAGATACATTCTCTTGCTTCTATATCCATCCTCCCCTCCTCCCAACCCAACTACCATACCCCAAGAAAAAACATAGGAAGGTTTTTTTACTTTTTTTGCACTACCTGTAAGCATTTTGAATAAGAATTAAATCGCTGTTTTAAATGTCTGAGTACTCTCATCATAACTTCCATCCTTCATTGAAGAACAAATGAATTGCACCCTGAGAAATATGTGGTGCATTAGTGCATCTACTTGTCCTTGTATATGCTACTACTCCTATTGTTTGCTATATTATGTTTTACTATTGTTGAATCTAGTCTGCTGACATGCTTCCTTCCTATCTAGAAAGATATTATTATTGCTTATTTACTAAGATAAAATTCATTTAGGGATTCTTCTAGAGACTGGACATACGGGGCAAAGGCCTAAATGGACTGAATATTTTGCTTTCTACTACATTATGTGATTCAGTCCAGCAACATCCAACTCAGTGGCTGTTCAACTGTTTTTTTGTCGTTTTATTGTGCAATTTATGGACATTGATTGTGATTGACTAATAATCTTCTTTATCAATTTTGATTTAACTTCAGGATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGGGTATGTTCAAACACAAAAGCCAATATAGAAACCTCTAGATTAGCAAATAAATGGAAAGGGAGTGCTGCTCCCAGTGAACTTTGTTCTTCTCGTATTCTTGATCTGTGAACTTAGATTTACTCAAATGAATGGTTATTGAATTTTCTCCTTTTTGGGAAGGTGAGGAATATCTACTTGGAGTATTATAAACTTGCAAATTCTTTAGGTTATTGGGAGAACTAAATATATATGTATCTGGATTGCTGCTGCATATGCGTATGGACCAAAATTACATTTATTTAACTTCGATACTTTGTTTTGTTCTCTTCTTAACTTTTTCCTTTTCACTTGCAAGTATTAGGAGCTCCTCGCATACTTGTCTAGTGTTGTTTCATATACACTATATTGGCCTTAAAGTAGCTCTAGTTGATTCTTTTGACTTCAATGAACAATTTACTGCTTCCAGCTTGTTGAATTGGAATCTTACAGATAGGGTTCTGTCAGATGGATCTCCTCTTCAAGTTTTCTCAGGATTAAACCTGACTTACATTATGCATAGCATTATATTCTCTATATGGAGATGATAAATTTCTAATTTCTAAATATTATGAACACAGTAAAAATAATTGAAATGAACTACTGAAAACTCACTTTGTTTTTGGTGTCAGTGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAGGTTTAGCCTTTGAAAGCTAACTTATGTCTGATCTTGGGAAGATACGCCGTGTTTCTCTTTTCCTTTCCCCATTCCTAGTTCTCTTGCTAGGGGTGTGAATGGTGGTGTTTGGAGGATTACAGTACCACTATACTGGAACAGTACATGCAGTCTAACTGATGTTTCGACCAGTAGCAATGCCACTTTTCGCTGCTGTTTGATTCGAGTCATTGATAGATAGAAGCTTTCTTGTCATTACTGCTTATCATACTTGATGCGTTCACGTAGGAATTTTACATTTTGTCCTTGCAATTTATGTTAAATCTGCTGAGTAAGTTATGTTTGAGTGCATAAATGAATACCCTTTCTTTGTTAGTAGGTAAGTTTTTCTCATTAGGTCATCAATATTTTCCTGGATTGGGATTCGTAAATATGTTAATAGATTCTTGATCTGTATCTTCCATTTTTGGGTGTGTGTGTTATGTCTTTGTTGGGGGTTCTTGTTTTGGTTCAGTACTTCAGGGATTATTAACAGTACTTTTTGCAAGAATATGTGTGGGTTGAAAATTGTGTGTTCATACTCGAACTTTTGAGTGTTCTTATTTCATTATGAGCTTTTTAAACATTGAAGAAGGTTTTCCTTTTCAAGTAAATAGTTCTTTGTTAAAATCAAATTATGATTGCTGATTTAGCAATTTTTGGTTTACTGTTATGTTCATTTTAAATTTAACTTTAAAAGGTAGCAGTAAATGTTGACAACCTTCATGTTTTACCCCAGCATTATATGGTCCTGCTAACTGCTGATGTTTATGATGGTATTTTCTCTTGTCCATATTCTACTTAATTTCTTATCAGTAAGAGTTGCACAAGTACTTTGAATTGTCATGATAGTGATGTATTGATCTCACAGGAGTCGGGACACAGTCAAATTTACAAGGAAAGATAGTATCTTCTTGTGCTATAGTTTGCATTGTATCCTCTCTTCACATAATCAACACATACTGCACCTCAAATTAAGTTATAGTAACTATCTCCAGCTTATTTTTCTGCATGCATATCGTATGACCTCTAATGTCCCCGCTGAAGTGTATTTTTTTGTGATAAATTACCTACAGGAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGA</genome_strand>
        <mrna_strand>TCTCTTCCTTACTAGGAAACTTGAAGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTTCGCTTTGACTTTGCAGGAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGCGAAGGTTCCTTTCATTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372669" ref_strand="+" ref_description="SGN-E372669 [TUS-31-G19]">
      <seq>agagaccaaaagctttgttcagatggctccgtccccttcaatccctaatctgcaagaaattcggcgtaagtgtgtgacagtacataacagtcatggtgagaaactggtgggcgtgctacatgaaacaaattccctggagcttgtaattatctgccacggtttcaaatcatcgaaggatcggattcccatggtgaatcttgctgctgcttatgagaaagaaggaatcagtgccttccgctttgactttgcaggaaatggtgaaagcgaaggttcctttcagtatggtaactaccgcagagaagctgatgatcttcgtgccatagtcgagcacttccataaggaggagcgtttcatagcagcaatagttggtcatagcaaaggtttagcctttgaaagctaacttatgtctgatcttgggaagatacgccgtgtttctcttttcctttccccattcctagttctcttgctaggggtgtgaatggtggtgtttggaggattacagtaccactatactggaacagtacatgcagtctaactgatgtttcgaccagtagcaatgccacttttcgctgctgtttgattcgagtcattgatagatagaagctttcttgtcattactgcttatcatacttgatgcgttcacgtaggaattttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="66610" stop="70601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66910" g_stop="66965" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66966" i_stop="68223" i_length="1258">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68224" g_stop="68342" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="175" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68343" i_stop="69172" i_length="830">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69173" g_stop="69255" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="258" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69256" i_stop="69902" i_length="647">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69903" g_stop="70301" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="657" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E372669" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66910" e_stop="66965"/>
          <exon e_start="68224" e_stop="68342"/>
          <exon e_start="69173" e_stop="69255"/>
          <exon e_start="69903" e_stop="70301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAGGTATTGAATCTTTACTATGCAAAGGAACATATATTGAATCTTTTAGATCATCAAGATTCAAGAAGAGTTCGTGTTATGTGATTTTTCTGGGGTTTCTAATATTTTACTGAATTTGATCGTTTTTAAATTGGATTTTCTGAGAATAGAATTTTGGGTTTTTTCCATTGTTGTATTTGCTCCGTTTCATATATATATATATATATATATATATATAAACCACTCGGTTTCAGTTCACACTATCAAGTTTTAGTATTGTATGGTGAAAATCGTAGCACCCAATTTGATTTCTATCGATGATAGTACTATGTTTCAATTCAAATGTTACCATACTGCAAAAGCTAGCTACTAATGTAGGAGAGCCCAACATTATATAAGCTCCCCATTAATCATGGTTTTGATTCTTCAGGAAAAGAATTTATTTTTATTGTATGATTGGCTGAAATTTTGCATTGTATAGTTGTCATACAACCCCAAAAAAGAAAGAGAAATATCTAGGTGGCCCTTTTTACACGGACAACGGTTGAATCAAATATGAAATGCCTAAAGAAATTTCTCTCCGCTTATGTTTAGATGACCTTATGGTAATTGGATAGGCCATTGTGACTTGATAGTTCTTATTAATGTAGGTTCCAATCATTTTTAGTCATAAGGAAGAAAATATCAACACTATATGTGAGACAAGGCAATAAAAAGGAAGTCTGTTGTCTCGAATGACAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCCAGCCCCACATTAAGCAAAGTGAAGCCCGGTATCTAAATGGAGAAGGATAGAGGGGCGGGCCCATTAGCCACCGAGTTTAGAAGGGGCTGTGGTTGGTCCAAAGGGTGGTGGGTCACAGGCGGATTTCTCGGTTATAAAAAAAAGAAGTCTTTTGCTATTTGATAATGTATTTAAGTTTCACATTAGACTATATTTAGGCATAACACGATAATGATCTAACTGTAGACCTTTTTTTAAAAAAGAAAACGTAATATTTAAGTCTTATACAGTAGTTCAATAGCAGTTAATGGATGTCAATCAATGATACTGTAGTTTTGATGACCTTTCAACTTTCTATGATGCTGTAGTATTGTGATTTGTGCATGAGTTTTTATAACAGTTAATGAATGTGAATCACGGATGCTGTAGTTTAGTTATCCTTGCAATTATCTATGTCCCATTGACTGTGTTGGATGATACCGATCTTTTGTTTTTATCACCCTCCCTTTTTTCTTTTTCTTCCATAGAAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAGGTTTGTCACAATAATTTGAACACGTAGGAATTACAGCTCCTAATTATGTGGCTTATTCATATAATCATTTGTTTGATTTTTGCTGCATGTTGTTCTTGGTCGATGTATAATTTTTTTTATGAGAAGTAGATATTCTTATATAAAATATGGTTTATTGCTTTTTCTATGCAGCAACATGCAAGCTTAGCTTGAATTTGGTATTAAATTCTTTTAGCAACTTCTTTTTGCTATAACTGAGTGTAGCGGAATTTGTATTGAGAGATACATTCTCTTGCTTCTATATCCATCCTCCCCTCCTCCCAACCCAACTACCATACCCCAAGAAAAAACATAGGAAGGTTTTTTTACTTTTTTTGCACTACCTGTAAGCATTTTGAATAAGAATTAAATCGCTGTTTTAAATGTCTGAGTACTCTCATCATAACTTCCATCCTTCATTGAAGAACAAATGAATTGCACCCTGAGAAATATGTGGTGCATTAGTGCATCTACTTGTCCTTGTATATGCTACTACTCCTATTGTTTGCTATATTATGTTTTACTATTGTTGAATCTAGTCTGCTGACATGCTTCCTTCCTATCTAGAAAGATATTATTATTGCTTATTTACTAAGATAAAATTCATTTAGGGATTCTTCTAGAGACTGGACATACGGGGCAAAGGCCTAAATGGACTGAATATTTTGCTTTCTACTACATTATGTGATTCAGTCCAGCAACATCCAACTCAGTGGCTGTTCAACTGTTTTTTTGTCGTTTTATTGTGCAATTTATGGACATTGATTGTGATTGACTAATAATCTTCTTTATCAATTTTGATTTAACTTCAGGATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGGGTATGTTCAAACACAAAAGCCAATATAGAAACCTCTAGATTAGCAAATAAATGGAAAGGGAGTGCTGCTCCCAGTGAACTTTGTTCTTCTCGTATTCTTGATCTGTGAACTTAGATTTACTCAAATGAATGGTTATTGAATTTTCTCCTTTTTGGGAAGGTGAGGAATATCTACTTGGAGTATTATAAACTTGCAAATTCTTTAGGTTATTGGGAGAACTAAATATATATGTATCTGGATTGCTGCTGCATATGCGTATGGACCAAAATTACATTTATTTAACTTCGATACTTTGTTTTGTTCTCTTCTTAACTTTTTCCTTTTCACTTGCAAGTATTAGGAGCTCCTCGCATACTTGTCTAGTGTTGTTTCATATACACTATATTGGCCTTAAAGTAGCTCTAGTTGATTCTTTTGACTTCAATGAACAATTTACTGCTTCCAGCTTGTTGAATTGGAATCTTACAGATAGGGTTCTGTCAGATGGATCTCCTCTTCAAGTTTTCTCAGGATTAAACCTGACTTACATTATGCATAGCATTATATTCTCTATATGGAGATGATAAATTTCTAATTTCTAAATATTATGAACACAGTAAAAATAATTGAAATGAACTACTGAAAACTCACTTTGTTTTTGGTGTCAGTGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAGGTTTAGCCTTTGAAAGCTAACTTATGTCTGATCTTGGGAAGATACGCCGTGTTTCTCTTTTCCTTTCCCCATTCCTAGTTCTCTTGCTAGGGGTGTGAATGGTGGTGTTTGGAGGATTACAGTACCACTATACTGGAACAGTACATGCAGTCTAACTGATGTTTCGACCAGTAGCAATGCCACTTTTCGCTGCTGTTTGATTCGAGTCATTGATAGATAGAAGCTTTCTTGTCATTACTGCTTATCATACTTGATGCGTTCACGTAGGAATTTTACA</genome_strand>
        <mrna_strand>AGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAGGTTTAGCCTTTGAAAGCTAACTTATGTCTGATCTTGGGAAGATACGCCGTGTTTCTCTTTTCCTTTCCCCATTCCTAGTTCTCTTGCTAGGGGTGTGAATGGTGGTGTTTGGAGGATTACAGTACCACTATACTGGAACAGTACATGCAGTCTAACTGATGTTTCGACCAGTAGCAATGCCACTTTTCGCTGCTGTTTGATTCGAGTCATTGATAGATAGAAGCTTTCTTGTCATTACTGCTTATCATACTTGATGCGTTCACGTAGGAATTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290625" ref_strand="+" ref_description="SGN-E290625 [cLES-20-J10]">
      <seq>agagaccaaaagctttgttcagatggctccgtccccttcaatccctaatctgcaagaaattcggcgtaagtgtgtgacagtacataacagtcatggtgagaaactggtgggcgtgctacatgaaacaaattccctggagcttgtaattatctgccacggtttcaaatcatcgaaggatcggattcccatggtgaatcttgctgctgcttatgagaaagaaggaatcagtgccttccgctttgactttgcaggaaatggtgaaagcgaaggttcctttcagtatggtaactaccgcagagaagctgatgatcttcgtgccatagtcgagcacttccataaggaggagcgtttcatagcagcaatagttggtcatagcaaaggtttagcctttgaaagctaacttatgtctgatcttgggaagatacgccgtgtttctcttttcctttccccattcctagttctcttgctaggggtgtgaatggtggtgtttggaggattacagtaccactatactggaacagtacatgcagtctaactgatgtttcgaccagtagcaatgccacttttcgctgctgtttgattcgagtcattgatagatagaagctttcttgtcattactgcttatcatacttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="66610" stop="70580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66910" g_stop="66965" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66966" i_stop="68223" i_length="1258">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68224" g_stop="68342" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="175" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68343" i_stop="69172" i_length="830">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69173" g_stop="69255" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="258" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69256" i_stop="69902" i_length="647">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69903" g_stop="70280" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="636" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E290625" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66910" e_stop="66965"/>
          <exon e_start="68224" e_stop="68342"/>
          <exon e_start="69173" e_stop="69255"/>
          <exon e_start="69903" e_stop="70280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAGGTATTGAATCTTTACTATGCAAAGGAACATATATTGAATCTTTTAGATCATCAAGATTCAAGAAGAGTTCGTGTTATGTGATTTTTCTGGGGTTTCTAATATTTTACTGAATTTGATCGTTTTTAAATTGGATTTTCTGAGAATAGAATTTTGGGTTTTTTCCATTGTTGTATTTGCTCCGTTTCATATATATATATATATATATATATATATAAACCACTCGGTTTCAGTTCACACTATCAAGTTTTAGTATTGTATGGTGAAAATCGTAGCACCCAATTTGATTTCTATCGATGATAGTACTATGTTTCAATTCAAATGTTACCATACTGCAAAAGCTAGCTACTAATGTAGGAGAGCCCAACATTATATAAGCTCCCCATTAATCATGGTTTTGATTCTTCAGGAAAAGAATTTATTTTTATTGTATGATTGGCTGAAATTTTGCATTGTATAGTTGTCATACAACCCCAAAAAAGAAAGAGAAATATCTAGGTGGCCCTTTTTACACGGACAACGGTTGAATCAAATATGAAATGCCTAAAGAAATTTCTCTCCGCTTATGTTTAGATGACCTTATGGTAATTGGATAGGCCATTGTGACTTGATAGTTCTTATTAATGTAGGTTCCAATCATTTTTAGTCATAAGGAAGAAAATATCAACACTATATGTGAGACAAGGCAATAAAAAGGAAGTCTGTTGTCTCGAATGACAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCCAGCCCCACATTAAGCAAAGTGAAGCCCGGTATCTAAATGGAGAAGGATAGAGGGGCGGGCCCATTAGCCACCGAGTTTAGAAGGGGCTGTGGTTGGTCCAAAGGGTGGTGGGTCACAGGCGGATTTCTCGGTTATAAAAAAAAGAAGTCTTTTGCTATTTGATAATGTATTTAAGTTTCACATTAGACTATATTTAGGCATAACACGATAATGATCTAACTGTAGACCTTTTTTTAAAAAAGAAAACGTAATATTTAAGTCTTATACAGTAGTTCAATAGCAGTTAATGGATGTCAATCAATGATACTGTAGTTTTGATGACCTTTCAACTTTCTATGATGCTGTAGTATTGTGATTTGTGCATGAGTTTTTATAACAGTTAATGAATGTGAATCACGGATGCTGTAGTTTAGTTATCCTTGCAATTATCTATGTCCCATTGACTGTGTTGGATGATACCGATCTTTTGTTTTTATCACCCTCCCTTTTTTCTTTTTCTTCCATAGAAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAGGTTTGTCACAATAATTTGAACACGTAGGAATTACAGCTCCTAATTATGTGGCTTATTCATATAATCATTTGTTTGATTTTTGCTGCATGTTGTTCTTGGTCGATGTATAATTTTTTTTATGAGAAGTAGATATTCTTATATAAAATATGGTTTATTGCTTTTTCTATGCAGCAACATGCAAGCTTAGCTTGAATTTGGTATTAAATTCTTTTAGCAACTTCTTTTTGCTATAACTGAGTGTAGCGGAATTTGTATTGAGAGATACATTCTCTTGCTTCTATATCCATCCTCCCCTCCTCCCAACCCAACTACCATACCCCAAGAAAAAACATAGGAAGGTTTTTTTACTTTTTTTGCACTACCTGTAAGCATTTTGAATAAGAATTAAATCGCTGTTTTAAATGTCTGAGTACTCTCATCATAACTTCCATCCTTCATTGAAGAACAAATGAATTGCACCCTGAGAAATATGTGGTGCATTAGTGCATCTACTTGTCCTTGTATATGCTACTACTCCTATTGTTTGCTATATTATGTTTTACTATTGTTGAATCTAGTCTGCTGACATGCTTCCTTCCTATCTAGAAAGATATTATTATTGCTTATTTACTAAGATAAAATTCATTTAGGGATTCTTCTAGAGACTGGACATACGGGGCAAAGGCCTAAATGGACTGAATATTTTGCTTTCTACTACATTATGTGATTCAGTCCAGCAACATCCAACTCAGTGGCTGTTCAACTGTTTTTTTGTCGTTTTATTGTGCAATTTATGGACATTGATTGTGATTGACTAATAATCTTCTTTATCAATTTTGATTTAACTTCAGGATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGGGTATGTTCAAACACAAAAGCCAATATAGAAACCTCTAGATTAGCAAATAAATGGAAAGGGAGTGCTGCTCCCAGTGAACTTTGTTCTTCTCGTATTCTTGATCTGTGAACTTAGATTTACTCAAATGAATGGTTATTGAATTTTCTCCTTTTTGGGAAGGTGAGGAATATCTACTTGGAGTATTATAAACTTGCAAATTCTTTAGGTTATTGGGAGAACTAAATATATATGTATCTGGATTGCTGCTGCATATGCGTATGGACCAAAATTACATTTATTTAACTTCGATACTTTGTTTTGTTCTCTTCTTAACTTTTTCCTTTTCACTTGCAAGTATTAGGAGCTCCTCGCATACTTGTCTAGTGTTGTTTCATATACACTATATTGGCCTTAAAGTAGCTCTAGTTGATTCTTTTGACTTCAATGAACAATTTACTGCTTCCAGCTTGTTGAATTGGAATCTTACAGATAGGGTTCTGTCAGATGGATCTCCTCTTCAAGTTTTCTCAGGATTAAACCTGACTTACATTATGCATAGCATTATATTCTCTATATGGAGATGATAAATTTCTAATTTCTAAATATTATGAACACAGTAAAAATAATTGAAATGAACTACTGAAAACTCACTTTGTTTTTGGTGTCAGTGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAGGTTTAGCCTTTGAAAGCTAACTTATGTCTGATCTTGGGAAGATACGCCGTGTTTCTCTTTTCCTTTCCCCATTCCTAGTTCTCTTGCTAGGGGTGTGAATGGTGGTGTTTGGAGGATTACAGTACCACTATACTGGAACAGTACATGCAGTCTAACTGATGTTTCGACCAGTAGCAATGCCACTTTTCGCTGCTGTTTGATTCGAGTCATTGATAGATAGAAGCTTTCTTGTCATTACTGCTTATCATACTTGATG</genome_strand>
        <mrna_strand>AGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAGGTTTAGCCTTTGAAAGCTAACTTATGTCTGATCTTGGGAAGATACGCCGTGTTTCTCTTTTCCTTTCCCCATTCCTAGTTCTCTTGCTAGGGGTGTGAATGGTGGTGTTTGGAGGATTACAGTACCACTATACTGGAACAGTACATGCAGTCTAACTGATGTTTCGACCAGTAGCAATGCCACTTTTCGCTGCTGTTTGATTCGAGTCATTGATAGATAGAAGCTTTCTTGTCATTACTGCTTATCATACTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204523" ref_strand="+" ref_description="SGN-E204523 [cLEC-24-C13]">
      <seq>catacttgatgcgttcacgtaggaattttacattttgtccttgcaatttatgttaaatctgctgagtaagttatgtttgagtgcataaatgaataccctttctttgttagtaggtaagtttttctcattaggtcatcaatattttcctggattgggattcgtaaatatgttaatagattcttgatctgtatcttccatttttgggtgtgtgtgttatgtctttgttgggggttcttgttttggttcagtacttcagggattattaacagtactttttgcaagaatatgtgtgggttgaaaattgtgtgttcatactcgaacttttgagtgttcttatttcattatgagctttttaaacattgaagaaggttttccttttcaagtaaatagttctttgttaaaatcaaattatgattgctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="69970" stop="70992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70270" g_stop="70692" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E204523" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70270" e_stop="70692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACTTGATGCGTTCACGTAGGAATTTTACATTTTGTCCTTGCAATTTATGTTAAATCTGCTGAGTAAGTTATGTTTGAGTGCATAAATGAATACCCTTTCTTTGTTAGTAGGTAAGTTTTTCTCATTAGGTCATCAATATTTTCCTGGATTGGGATTCGTAAATATGTTAATAGATTCTTGATCTGTATCTTCCATTTTTGGGTGTGTGTGTTATGTCTTTGTTGGGGGTTCTTGTTTTGGTTCAGTACTTCAGGGATTATTAACAGTACTTTTTGCAAGAATATGTGTGGGTTGAAAATTGTGTGTTCATACTCGAACTTTTGAGTGTTCTTATTTCATTATGAGCTTTTTAAACATTGAAGAAGGTTTTCCTTTTCAAGTAAATAGTTCTTTGTTAAAATCAAATTATGATTGCTGATT</genome_strand>
        <mrna_strand>CATACTTGATGCGTTCACGTAGGAATTTTACATTTTGTCCTTGCAATTTATGTTAAATCTGCTGAGTAAGTTATGTTTGAGTGCATAAATGAATACCCTTTCTTTGTTAGTAGGTAAGTTTTTCTCATTAGGTCATCAATATTTTCCTGGATTGGGATTCGTAAATATGTTAATAGATTCTTGATCTGTATCTTCCATTTTTGGGTGTGTGTGTTATGTCTTTGTTGGGGGTTCTTGTTTTGGTTCAGTACTTCAGGGATTATTAACAGTACTTTTTGCAAGAATATGTGTGGGTTGAAAATTGTGTGTTCATACTCGAACTTTTGAGTGTTCTTATTTCATTATGAGCTTTTTAAACATTGAAGAAGGTTTTCCTTTTCAAGTAAATAGTTCTTTGTTAAAATCAAATTATGATTGCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244630" ref_strand="+" ref_description="SGN-E244630 [cLED-38-N6]">
      <seq>ttcaagtaaatagttctttgttaaaatcaaattatgattgctgatttagcaatttttggtttactgttatgttcattttaaatttaactttaaaaggtagcagtaaatgttgacaaccttcatgttttaccccagcattatatggtcctgctaactgctgatgtttatgatggtattttctcttgtccatattctacttaatttcttatcagtaagagttgcacaagtactttgaattgtcatgatagtgatgtattgatctcacaggagtcgggacacagtcaaatttacaaggaaagatagtatcttcttgtgctatagtttgcattgtatcctctcttcacataatcaacacatactgcacctcaaattaagttatagtaactatctccagcttatttttctgcatgcatatcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="70347" stop="71365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70647" g_stop="71065" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E244630" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70647" e_stop="71065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGTAAATAGTTCTTTGTTAAAATCAAATTATGATTGCTGATTTAGCAATTTTTGGTTTACTGTTATGTTCATTTTAAATTTAACTTTAAAAGGTAGCAGTAAATGTTGACAACCTTCATGTTTTACCCCAGCATTATATGGTCCTGCTAACTGCTGATGTTTATGATGGTATTTTCTCTTGTCCATATTCTACTTAATTTCTTATCAGTAAGAGTTGCACAAGTACTTTGAATTGTCATGATAGTGATGTATTGATCTCACAGGAGTCGGGACACAGTCAAATTTACAAGGAAAGATAGTATCTTCTTGTGCTATAGTTTGCATTGTATCCTCTCTTCACATAATCAACACATACTGCACCTCAAATTAAGTTATAGTAACTATCTCCAGCTTATTTTTCTGCATGCATATCGTA</genome_strand>
        <mrna_strand>TTCAAGTAAATAGTTCTTTGTTAAAATCAAATTATGATTGCTGATTTAGCAATTTTTGGTTTACTGTTATGTTCATTTTAAATTTAACTTTAAAAGGTAGCAGTAAATGTTGACAACCTTCATGTTTTACCCCAGCATTATATGGTCCTGCTAACTGCTGATGTTTATGATGGTATTTTCTCTTGTCCATATTCTACTTAATTTCTTATCAGTAAGAGTTGCACAAGTACTTTGAATTGTCATGATAGTGATGTATTGATCTCACAGGAGTCGGGACACAGTCAAATTTACAAGGAAAGATAGTATCTTCTTGTGCTATAGTTTGCATTGTATCCTCTCTTCACATAATCAACACATACTGCACCTCAAATTAAGTTATAGTAACTATCTCCAGCTTATTTTTCTGCATGCATATCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367818" ref_strand="+" ref_description="SGN-E367818 [TUS-22-A21]">
      <seq>tcatagcaaaggaggaaatgttgtactcttgtatgcttcgaactacaaggatgtacaaactgtcatcaatatttctgggcgcttcaatcttgagagagggatagagcatcgcttgggcagagacttcaaagagaagataaagcataacggttttattgatgttagaaatagaaaaggaaggttcaagtatcgtgtcactgaggaaagtttgatggaccgtctaacaactgatactcgtggatcatgtcaaagtatcaccaataactgcagggtattgacggtccatggttcaatggatgaaatggtgccagttgaagatgctatggaatttgccaagaatgtgtcaaatcataaattacaaattattgaaggagctgatcatgaattcactttgcatcaagatgagttgtcttccgttgtggttgcttttgtgaaagcaggtttaggtggaagaaactacatggctatgccatctgagtcatgcaaaagaacaagtggatgtatacattcacgattttgatccagtatccttatgttgtgtacaagttaattatttaccaacaacaagaaacagacaccaaaacagcttgtaactttgtaaatgagcatagccacttgtgtaatctcaccgctaataaaatgaagtatttgaaggaccaaataccaaaacttcgggcatcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="70810" stop="74165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71119" g_stop="71283" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="176" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71284" i_stop="73152" i_length="1869">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73153" g_stop="73246" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="270" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73247" i_stop="73451" i_length="205">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73452" g_stop="73865" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="684" r_length="414" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E367818" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71119" e_stop="71283"/>
          <exon e_start="73153" e_stop="73246"/>
          <exon e_start="73452" e_stop="73865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAGGTATGCTTAATGGACTTCTTTTCCTTTTGTGTTCTTAGTAATCGTCATATTTCTGTCCCATTTTCTGTTGGATGTTCTTTGGTATGGATCATTGGATGTTTCACACTTCTAAAACTTCTAAAAAGCTGCTAAAAAATGACTGACCAAAAAGCGAGGGACAACGTCGCTCCAAAACATGATGCCATTTGCAACGTTATCCGTCATTTTTATTATTTTCTTAGTTTTTTGTACAAATGATGGACAATGACTCTATGTCCGTCGCTTTTTTTTTTGGGCGGATTTTTGCGCCAAATATACATATAATTAATAATTATTTATTTAATATACGTAGAGACGCCATCTATTGCTTTTAATTTAATATAATTATTTTTAAATTAGTAAATAACTACGTCATCCGTCATACGTAAAACGATGGATGACGTGGTTATTTAATTAAAAACGACGGACGATGTCTCTTCGTATATGAAATAAATAATTACTAATTATATATACATATAAATATATATGGCTCAAAAAAGCGATAGACATAGATTCACTGTCCGTCACTTTTTGTAAAAAATAAGAAAAACGACGTACAGCGTTGCAAATGGTGTCGTTTTTTGGAGCAACACCGCCTGTCACTTTTTGGTCTGTAGATTTTTAGCAGGTTTTTAGTAGTGTCAGTGGATGATAGTAAATTAAACCACTTAGGGAGGTAGATGACATTGTTAGATGACTTGGTGTGGCTGGTTTAGCTAATGGAAATCATTTCGTACAGTTGATTAGACAAGATATGGACTGTAAATGTGAGGTACAGCACAAGTTTGGTTGATGAAAATGACATAATATTATGCTTCAATAGATAAGTTCTGATGATTACAAGTCTGGAACTAAAGACTTGGTAAATATGGAATGTGGCATTCTTTTCTAAATAAACTAAAGCAGAATGTGAGACACATAAATTGAAACGGGGGAACACATCAATATAAAAATTTAAAAATGTAACAAATATGAAGGGGCAAAACCTTAGTATAATGAAGAATCACACTCCATTCACTGAGTGAGTTGCTTCGAAATAGTGTTATTATACTTCAAGCCCATGCCCAGCACATATTTCAGACGTTGCTCTGCATCAACTATCGTGAATATGTCGCTTCATTCTTATTCATAATTATTTGATCCTATATTTAAATGATACCCGATGATCTTTCGCTTCCGTTCCCAAGAAATATAAACATTCTTGCAGCAACTCCTTGCTTCTTTTTTTTTTGTATGTTAAATGAAGTTTATGCGTTCTCAATTAACTCGAGTTTTAACTTTGTAATTCACTTCAAATTTTTTGTTGTAATTTATATTTATTACTAGTCTCCACAAAATAACGTAAAAGGGAGTGTGTTTTGGTGGAAAAAAGGAAAAACTTATTTTGAGGCTTTTATTATGAAATAAAAAGAGCAACAGTAAAACCCCTTTGTCATGTCTGGTTTTGTCCAATTCGCCCCTTCCCATGCTAGTGGGTTTGCCTCAGTTCTGCCTTAGAGTCTAGGCGAATCTATGTGCAAAATTCTGGGTACATCATTGCACCAAAAGAGGCATAACAAAGATGAATTCTAGGTAAACCTTGTGCTGTTGATCCTATGCATTCTCTAATTTGTGGTTGTCTCCTCCACCGTTCTTAGGTTGAGAGTGATCAGTTCTATTTTCTATTCTGATATCCTTATCAAATATCCTAGACTTGACTGCATGTAGGACACCTGTGGGAGAAAAACAACGAGAAAGTCTAATTTAACATACCCACGAATGATATGGTAACCCAATTCCTTTTGTCTTGATAGATTTTGAGATTGCCTTTAGTTGTTAGTCCTACATACTGCCATCTCTTGCTATTTGCAGGAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAGGTCAGGAATTGATATTTTGATTATTACTAAGTGATTCTTAAGTTTTCACATCATATCTACTGTATGAATACAACCTTTTCAACAGTAGGGCACTAATTTGTTTTCTGTGCCTATTGTGTGCACGTCTCAGTATGAGTCCACTTTTGCTTGTGAATGGTTATTTGTTCATCAACTGTGTATTAAACCTGCTGGGTTAATATAATAGGGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCATCAAGATGAGTTGTCTTCCGTTGTGGTTGCTTTTGTGAAAGCAGGTTTAGGTGGAAGAAACTACATGGCTATGCCATCTGAGTCATGCAAAAGAACAAGTGGATGTATACATTCACGATTTTGATCCAGTATCCTTATGTTGTGTACAAGTTAATTATTTACCAACAACAAGAAACAGACACCAAAACAGCTTGTAACTTTGTAAATGAGCATAGCCACTGTTGTAATCTCACCGCTAATTAAATGAAGTATTTGAAGGACCAAATACCAAAACTCGGGGCATCACAT</genome_strand>
        <mrna_strand>GAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAG.............................................................................................................................................................................................................GGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCATCAAGATGAGTTGTCTTCCGTTGTGGTTGCTTTTGTGAAAGCAGGTTTAGGTGGAAGAAACTACATGGCTATGCCATCTGAGTCATGCAAAAGAACAAGTGGATGTATACATTCACGATTTTGATCCAGTATCCTTATGTTGTGTACAAGTTAATTATTTACCAACAACAAGAAACAGACACCAAAACAGCTTGTAACTTTGTAAATGAGCATAGCCACTTGTGTAATCTCACCGCTAATAAAATGAAGTATTTGAAGGACCAAATACCAAAACTTCGGGCATCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238299" ref_strand="+" ref_description="SGN-E238299 [cLED-17-A19]">
      <seq>tcatagcaaaggaggaaatgttgtactcttgtatgcttcgaactacaaggatgtacaaactgtcatcaatatttctgggcgcttcaatcttgagagagggatagagcatcgcttgggcagagacttcaaagagaagataaagcataacggttttattgatgttagaaatagaaaaggaaggttcaagtatcgtgtcactgaggaaagtttgatggaccgtctaacaactgatactcgtggatcatgtcaaagtatcaccaataactgcagggtattgacggtccatggttcaatggatgaaatggtgccagttgaagatgctatggaatttgccaagaatgtgtcaaatcataaattacaaattattgaaggagctgatcatgaattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="70810" stop="73871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71119" g_stop="71283" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="176" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71284" i_stop="73152" i_length="1869">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73153" g_stop="73246" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="270" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73247" i_stop="73451" i_length="205">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73452" g_stop="73571" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="390" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E238299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71119" e_stop="71283"/>
          <exon e_start="73153" e_stop="73246"/>
          <exon e_start="73452" e_stop="73571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAGGTATGCTTAATGGACTTCTTTTCCTTTTGTGTTCTTAGTAATCGTCATATTTCTGTCCCATTTTCTGTTGGATGTTCTTTGGTATGGATCATTGGATGTTTCACACTTCTAAAACTTCTAAAAAGCTGCTAAAAAATGACTGACCAAAAAGCGAGGGACAACGTCGCTCCAAAACATGATGCCATTTGCAACGTTATCCGTCATTTTTATTATTTTCTTAGTTTTTTGTACAAATGATGGACAATGACTCTATGTCCGTCGCTTTTTTTTTTGGGCGGATTTTTGCGCCAAATATACATATAATTAATAATTATTTATTTAATATACGTAGAGACGCCATCTATTGCTTTTAATTTAATATAATTATTTTTAAATTAGTAAATAACTACGTCATCCGTCATACGTAAAACGATGGATGACGTGGTTATTTAATTAAAAACGACGGACGATGTCTCTTCGTATATGAAATAAATAATTACTAATTATATATACATATAAATATATATGGCTCAAAAAAGCGATAGACATAGATTCACTGTCCGTCACTTTTTGTAAAAAATAAGAAAAACGACGTACAGCGTTGCAAATGGTGTCGTTTTTTGGAGCAACACCGCCTGTCACTTTTTGGTCTGTAGATTTTTAGCAGGTTTTTAGTAGTGTCAGTGGATGATAGTAAATTAAACCACTTAGGGAGGTAGATGACATTGTTAGATGACTTGGTGTGGCTGGTTTAGCTAATGGAAATCATTTCGTACAGTTGATTAGACAAGATATGGACTGTAAATGTGAGGTACAGCACAAGTTTGGTTGATGAAAATGACATAATATTATGCTTCAATAGATAAGTTCTGATGATTACAAGTCTGGAACTAAAGACTTGGTAAATATGGAATGTGGCATTCTTTTCTAAATAAACTAAAGCAGAATGTGAGACACATAAATTGAAACGGGGGAACACATCAATATAAAAATTTAAAAATGTAACAAATATGAAGGGGCAAAACCTTAGTATAATGAAGAATCACACTCCATTCACTGAGTGAGTTGCTTCGAAATAGTGTTATTATACTTCAAGCCCATGCCCAGCACATATTTCAGACGTTGCTCTGCATCAACTATCGTGAATATGTCGCTTCATTCTTATTCATAATTATTTGATCCTATATTTAAATGATACCCGATGATCTTTCGCTTCCGTTCCCAAGAAATATAAACATTCTTGCAGCAACTCCTTGCTTCTTTTTTTTTTGTATGTTAAATGAAGTTTATGCGTTCTCAATTAACTCGAGTTTTAACTTTGTAATTCACTTCAAATTTTTTGTTGTAATTTATATTTATTACTAGTCTCCACAAAATAACGTAAAAGGGAGTGTGTTTTGGTGGAAAAAAGGAAAAACTTATTTTGAGGCTTTTATTATGAAATAAAAAGAGCAACAGTAAAACCCCTTTGTCATGTCTGGTTTTGTCCAATTCGCCCCTTCCCATGCTAGTGGGTTTGCCTCAGTTCTGCCTTAGAGTCTAGGCGAATCTATGTGCAAAATTCTGGGTACATCATTGCACCAAAAGAGGCATAACAAAGATGAATTCTAGGTAAACCTTGTGCTGTTGATCCTATGCATTCTCTAATTTGTGGTTGTCTCCTCCACCGTTCTTAGGTTGAGAGTGATCAGTTCTATTTTCTATTCTGATATCCTTATCAAATATCCTAGACTTGACTGCATGTAGGACACCTGTGGGAGAAAAACAACGAGAAAGTCTAATTTAACATACCCACGAATGATATGGTAACCCAATTCCTTTTGTCTTGATAGATTTTGAGATTGCCTTTAGTTGTTAGTCCTACATACTGCCATCTCTTGCTATTTGCAGGAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAGGTCAGGAATTGATATTTTGATTATTACTAAGTGATTCTTAAGTTTTCACATCATATCTACTGTATGAATACAACCTTTTCAACAGTAGGGCACTAATTTGTTTTCTGTGCCTATTGTGTGCACGTCTCAGTATGAGTCCACTTTTGCTTGTGAATGGTTATTTGTTCATCAACTGTGTATTAAACCTGCTGGGTTAATATAATAGGGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCAC</genome_strand>
        <mrna_strand>GAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAG.............................................................................................................................................................................................................GGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549849" ref_strand="+" ref_description="SGN-E549849 [TUS-6-A20](-)">
      <seq>agagggatagagcatcgctngggcagagacttcaaagagaagataaagcataacggttttattgatgttagaaatagaaaaggaaggttcaagtatcgtgtcactgaggaaagtttgatggaccgtctaacaactgatactcgtggatcatgtcaaagtatcaccaataactgcagggtattgacggtccatggttcaatggatgaaatggtgccagttgaagatgctatggaatttgccaagaatgtgtcaaatcataaattacaaattattgaaggagctgatcatgaattcactttgcatcaagatgagttgtcttccgttgtggttgcttttgtgaaagcaggtttaggtggaagaaactacatggctatgccatctgagtcatgcaaaagaacaagtggatgtatacattcacgattttgatccagtatccttatgttgtgtacaagttaattatttaccaacaacaagaaacagacaccaaaacagcttgtaactttgtaaatgagcatagccactgttgtaatctcaccgctaattaaatgaagtatttgaaggaccaaataccaaaactcggggcatcacatgaaatttataggtactgcagaagatggggaagaaaacaagaaaaggatattaatgtagtaatggcggttgttttctttcctatttttgctggaaagaaccatcattcaacattctttgaacttctgtacaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="70902" stop="74300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71202" g_stop="71283" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71284" i_stop="73152" i_length="1869">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73153" g_stop="73246" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="176" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73247" i_stop="73451" i_length="205">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73452" g_stop="74000" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="725" r_length="549" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E549849" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71202" e_stop="71283"/>
          <exon e_start="73153" e_stop="73246"/>
          <exon e_start="73452" e_stop="74000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAGGTATGCTTAATGGACTTCTTTTCCTTTTGTGTTCTTAGTAATCGTCATATTTCTGTCCCATTTTCTGTTGGATGTTCTTTGGTATGGATCATTGGATGTTTCACACTTCTAAAACTTCTAAAAAGCTGCTAAAAAATGACTGACCAAAAAGCGAGGGACAACGTCGCTCCAAAACATGATGCCATTTGCAACGTTATCCGTCATTTTTATTATTTTCTTAGTTTTTTGTACAAATGATGGACAATGACTCTATGTCCGTCGCTTTTTTTTTTGGGCGGATTTTTGCGCCAAATATACATATAATTAATAATTATTTATTTAATATACGTAGAGACGCCATCTATTGCTTTTAATTTAATATAATTATTTTTAAATTAGTAAATAACTACGTCATCCGTCATACGTAAAACGATGGATGACGTGGTTATTTAATTAAAAACGACGGACGATGTCTCTTCGTATATGAAATAAATAATTACTAATTATATATACATATAAATATATATGGCTCAAAAAAGCGATAGACATAGATTCACTGTCCGTCACTTTTTGTAAAAAATAAGAAAAACGACGTACAGCGTTGCAAATGGTGTCGTTTTTTGGAGCAACACCGCCTGTCACTTTTTGGTCTGTAGATTTTTAGCAGGTTTTTAGTAGTGTCAGTGGATGATAGTAAATTAAACCACTTAGGGAGGTAGATGACATTGTTAGATGACTTGGTGTGGCTGGTTTAGCTAATGGAAATCATTTCGTACAGTTGATTAGACAAGATATGGACTGTAAATGTGAGGTACAGCACAAGTTTGGTTGATGAAAATGACATAATATTATGCTTCAATAGATAAGTTCTGATGATTACAAGTCTGGAACTAAAGACTTGGTAAATATGGAATGTGGCATTCTTTTCTAAATAAACTAAAGCAGAATGTGAGACACATAAATTGAAACGGGGGAACACATCAATATAAAAATTTAAAAATGTAACAAATATGAAGGGGCAAAACCTTAGTATAATGAAGAATCACACTCCATTCACTGAGTGAGTTGCTTCGAAATAGTGTTATTATACTTCAAGCCCATGCCCAGCACATATTTCAGACGTTGCTCTGCATCAACTATCGTGAATATGTCGCTTCATTCTTATTCATAATTATTTGATCCTATATTTAAATGATACCCGATGATCTTTCGCTTCCGTTCCCAAGAAATATAAACATTCTTGCAGCAACTCCTTGCTTCTTTTTTTTTTGTATGTTAAATGAAGTTTATGCGTTCTCAATTAACTCGAGTTTTAACTTTGTAATTCACTTCAAATTTTTTGTTGTAATTTATATTTATTACTAGTCTCCACAAAATAACGTAAAAGGGAGTGTGTTTTGGTGGAAAAAAGGAAAAACTTATTTTGAGGCTTTTATTATGAAATAAAAAGAGCAACAGTAAAACCCCTTTGTCATGTCTGGTTTTGTCCAATTCGCCCCTTCCCATGCTAGTGGGTTTGCCTCAGTTCTGCCTTAGAGTCTAGGCGAATCTATGTGCAAAATTCTGGGTACATCATTGCACCAAAAGAGGCATAACAAAGATGAATTCTAGGTAAACCTTGTGCTGTTGATCCTATGCATTCTCTAATTTGTGGTTGTCTCCTCCACCGTTCTTAGGTTGAGAGTGATCAGTTCTATTTTCTATTCTGATATCCTTATCAAATATCCTAGACTTGACTGCATGTAGGACACCTGTGGGAGAAAAACAACGAGAAAGTCTAATTTAACATACCCACGAATGATATGGTAACCCAATTCCTTTTGTCTTGATAGATTTTGAGATTGCCTTTAGTTGTTAGTCCTACATACTGCCATCTCTTGCTATTTGCAGGAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAGGTCAGGAATTGATATTTTGATTATTACTAAGTGATTCTTAAGTTTTCACATCATATCTACTGTATGAATACAACCTTTTCAACAGTAGGGCACTAATTTGTTTTCTGTGCCTATTGTGTGCACGTCTCAGTATGAGTCCACTTTTGCTTGTGAATGGTTATTTGTTCATCAACTGTGTATTAAACCTGCTGGGTTAATATAATAGGGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCATCAAGATGAGTTGTCTTCCGTTGTGGTTGCTTTTGTGAAAGCAGGTTTAGGTGGAAGAAACTACATGGCTATGCCATCTGAGTCATGCAAAAGAACAAGTGGATGTATACATTCACGATTTTGATCCAGTATCCTTATGTTGTGTACAAGTTAATTATTTACCAACAACAAGAAACAGACACCAAAACAGCTTGTAACTTTGTAAATGAGCATAGCCACTGTTGTAATCTCACCGCTAATTAAATGAAGTATTTGAAGGACCAAATACCAAAACTCGGGGCATCACATGAAATTTATAGGTACTGCAGAAGATGGGGAAGAAAACAAGAAAAGGATATTAATGTAGTAATGGCGGTTGTTTTCTTTCCTATTTTTGCTGGAAAGAACCATCATTCAACATTCTTTGAACTTCTGTACAATTTT</genome_strand>
        <mrna_strand>AGAGGGATAGAGCATCGCTNGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAG.............................................................................................................................................................................................................GGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCATCAAGATGAGTTGTCTTCCGTTGTGGTTGCTTTTGTGAAAGCAGGTTTAGGTGGAAGAAACTACATGGCTATGCCATCTGAGTCATGCAAAAGAACAAGTGGATGTATACATTCACGATTTTGATCCAGTATCCTTATGTTGTGTACAAGTTAATTATTTACCAACAACAAGAAACAGACACCAAAACAGCTTGTAACTTTGTAAATGAGCATAGCCACTGTTGTAATCTCACCGCTAATTAAATGAAGTATTTGAAGGACCAAATACCAAAACTCGGGGCATCACATGAAATTTATAGGTACTGCAGAAGATGGGGAAGAAAACAAGAAAAGGATATTAATGTAGTAATGGCGGTTGTTTTCTTTCCTATTTTTGCTGGAAAGAACCATCATTCAACATTCTTTGAACTTCTGTACAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372668" ref_strand="+" ref_description="SGN-E372668 [TUS-31-G19](-)">
      <seq>aaaggaaggttcaagtatcgtgtcactgaggaaagtttgatggaccgtctaacaactgatactcgtggatcatgtcaaagtatcaccaataactgcagggtattgacggtccatggttcaatggatgaaatggtgccagttgaagatgctatggaatttgccaagaatgtgtcaaatcataaattacaaattattgaaggagctgatcatgaattcactttgcatcaagatgagttgtcttccgttgtggttgcttttgtgaaagcaggtttaggtggaagaaactacatggctatgccatttgagtcatgcaaaagaacaagtggatgtatacattcacgattttgatccagtatccttatgttgtgtacaagttaattatttaccaacaacaagaaacagacaccaaaacagcttgtaactttgtaaatgagcatagccactgttgtaatctcaccgctaattaaatgaagtatttgaaggaccaaataccaaaactcggggcatcacatgaaatttataggtactgcagaagatggggaagaaaacaagaaaaggatattaatgtagtaatggcggttgttttctttcctatttttgctggaaagaaccatcattcaacattctttgaacttctgtacaattttatatcaaacattgatttatacaagtagtgaaatgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="72851" stop="74340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73149" g_stop="73246" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73247" i_stop="73451" i_length="205">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73452" g_stop="74045" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="692" r_length="594" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E372668" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73149" e_stop="73246"/>
          <exon e_start="73452" e_stop="74045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAGGTCAGGAATTGATATTTTGATTATTACTAAGTGATTCTTAAGTTTTCACATCATATCTACTGTATGAATACAACCTTTTCAACAGTAGGGCACTAATTTGTTTTCTGTGCCTATTGTGTGCACGTCTCAGTATGAGTCCACTTTTGCTTGTGAATGGTTATTTGTTCATCAACTGTGTATTAAACCTGCTGGGTTAATATAATAGGGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCATCAAGATGAGTTGTCTTCCGTTGTGGTTGCTTTTGTGAAAGCAGGTTTAGGTGGAAGAAACTACATGGCTATGCCATCTGAGTCATGCAAAAGAACAAGTGGATGTATACATTCACGATTTTGATCCAGTATCCTTATGTTGTGTACAAGTTAATTATTTACCAACAACAAGAAACAGACACCAAAACAGCTTGTAACTTTGTAAATGAGCATAGCCACTGTTGTAATCTCACCGCTAATTAAATGAAGTATTTGAAGGACCAAATACCAAAACTCGGGGCATCACATGAAATTTATAGGTACTGCAGAAGATGGGGAAGAAAACAAGAAAAGGATATTAATGTAGTAATGGCGGTTGTTTTCTTTCCTATTTTTGCTGGAAAGAACCATCATTCAACATTCTTTGAACTTCTGTACAATTTTATATCAAACATTGATTTATACAAGTAGTGAAATGTTGAAATTGCT</genome_strand>
        <mrna_strand>AAAGGAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAG.............................................................................................................................................................................................................GGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCATCAAGATGAGTTGTCTTCCGTTGTGGTTGCTTTTGTGAAAGCAGGTTTAGGTGGAAGAAACTACATGGCTATGCCATTTGAGTCATGCAAAAGAACAAGTGGATGTATACATTCACGATTTTGATCCAGTATCCTTATGTTGTGTACAAGTTAATTATTTACCAACAACAAGAAACAGACACCAAAACAGCTTGTAACTTTGTAAATGAGCATAGCCACTGTTGTAATCTCACCGCTAATTAAATGAAGTATTTGAAGGACCAAATACCAAAACTCGGGGCATCACATGAAATTTATAGGTACTGCAGAAGATGGGGAAGAAAACAAGAAAAGGATATTAATGTAGTAATGGCGGTTGTTTTCTTTCCTATTTTTGCTGGAAAGAACCATCATTCAACATTCTTTGAACTTCTGTACAATTTTATATCAAACATTGATTTATACAAGTAGTGAAATGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338221" ref_strand="+" ref_description="SGN-E338221 [cTOE-13-A15]">
      <seq>ttgacggtccatggttcaatggatgaaatggtgccagttgaagatgctatggaatttgccaagaatgtgtcaaatcataaattacaaattattgaaggagctgatcatgaattcactttgcatcaagatgagttgtcttccgttgtggttgcttttgtgaaagcaggtttaggtggaagaaactacatggctatgccatctgagtcatgcaaaagaacaagtggatgtatacattcacgattttgatccagtatccttatgttgtgtacaagttaattatttaccaacaacaagaaacagacaccaaaacagcttgtaactttgtaaatgagcatagccactgttgtaatctcaccggtaattaaatgaagtatttgaaggaccaaataccaaaactcggggcatcacatgaaatttataggtactgcagaagatggggaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="73156" stop="74201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73456" g_stop="73901" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E338221" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73456" e_stop="73901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCATCAAGATGAGTTGTCTTCCGTTGTGGTTGCTTTTGTGAAAGCAGGTTTAGGTGGAAGAAACTACATGGCTATGCCATCTGAGTCATGCAAAAGAACAAGTGGATGTATACATTCACGATTTTGATCCAGTATCCTTATGTTGTGTACAAGTTAATTATTTACCAACAACAAGAAACAGACACCAAAACAGCTTGTAACTTTGTAAATGAGCATAGCCACTGTTGTAATCTCACCGCTAATTAAATGAAGTATTTGAAGGACCAAATACCAAAACTCGGGGCATCACATGAAATTTATAGGTACTGCAGAAGATGGGGAAGAAAA</genome_strand>
        <mrna_strand>TTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCATCAAGATGAGTTGTCTTCCGTTGTGGTTGCTTTTGTGAAAGCAGGTTTAGGTGGAAGAAACTACATGGCTATGCCATCTGAGTCATGCAAAAGAACAAGTGGATGTATACATTCACGATTTTGATCCAGTATCCTTATGTTGTGTACAAGTTAATTATTTACCAACAACAAGAAACAGACACCAAAACAGCTTGTAACTTTGTAAATGAGCATAGCCACTGTTGTAATCTCACCGGTAATTAAATGAAGTATTTGAAGGACCAAATACCAAAACTCGGGGCATCACATGAAATTTATAGGTACTGCAGAAGATGGGGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548190" ref_strand="-" ref_description="SGN-E548190 [TUS-58-O16]">
      <seq>tcaggctgctgttgacatccactaacggtgtatgtaaaggagggcagaccaggggatatttggatatcagagatacagttcaatgtgttgaaattgcaattgccaatccagcaaaaccaggagagttccgggttttcaaccaattcacagagcagttttcagtaaatgagcttgcagcccttgtcaccaaggcagggcaaaaacttggccttgaggtgaaggccatatcagtgcccaatccaagagtagaagcagaggaacactactacaatgccaaacatactaaacttattgagctgggactacaacctcaccttctttctgattctcttctcgactctctattgaactttgctgttcaatataaggatcgtgtcgacacaaagcagataatgcctagtgtttcctggaaaaaaattggcgcgaagccaaagactgttgcagcataaatcacttagacaagctatagagacttgagactgggagttcttgtatgtcatttttatataggagctatagtattttacaatgccttgcacaattttatgttgtaactttgggaagtatttgttgtattccgaagcttgtgaaggttgtggatgtagtttttgtttgagaaaatactcgaggtagtcgtgacctgtctcaagcctgaaacttgtgtgatttacttgtcaatttagttttggctacacagaagtgttcccggatatcttcctcattggacagatgaatttttgcttaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="76079" stop="73895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75779" g_stop="75731" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75730" i_stop="74894" i_length="837">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74893" g_stop="74198" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="743" r_length="696" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="744" polyA_stop="765"/>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E548190" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548190" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75779" e_stop="75731"/>
          <exon e_start="74893" e_stop="74198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCTGCTGTTGGACATCCACTAACGGTGTATGGTAAAGGAGGGCAGGTACGAATTTCCTCTTGTTCCATGTGGTACTGCATTTTAATGAATAAACAACCAATTCTATTGAAGAAATCTTGAGCTCTATCCATAGGTCCTCAAGTGAAACTTCTTTCCTAGCTTTTATACAGTGCATAAGATATACATTGAGTCCATCTCTGACGTTTTTGTTATTTGTTCTTGCGAACGAACATATCAAAAAAATTGTTCTTGGGACCATAAACAGGGTGAACTTCAATAATCAGTGACATGATCCATAACTGCGCTCATCAAAAGAGAGTTAAAATGAACTCATTCTTCCATTGCCATGACTGTAACCATTCAATGCGGAGACAGAAATCGGAAAAAACTTATATTTTTATCAGGAAGGGACTGAGAAACCTTCTATATAGGAAATGCTAAAATCACTGGACTGTAGACGTAATCTGCATACATTCTCCCCAACTGCTGAATATAAGCTGATATTTCTTCCCTTTATGTGTTTGTAATTCATTGCACTAGAATTAGTAACACCCACGAAAGTAAATTTTTAGTACTATTGGAGATTGTTTCTGGACATGGAAGGTATTGAGATTTGGATGATTTCACCTCATATAGTGCATCTAACACGATTGTCCAGAAAGCAAGATAAGTGGTGAGATGGGGGCCAGTACGGTCTTTAGAAAATAATAAAAGGTGAATTTGAATGGCTTCCTTCCTTTGGTGGGGCTTGATTTTTGTTCACTCCCGCTTACTGTTAATATTAAGTTATGAGCACCCTGACCAACAATCCCTTGACAATAAGTCTTTTTTCATTTAACAGCATTCTTTGCTTTTCTAACGTGTTTTTTTTGTGTTGTACAGACCAGGGGATATTTGGATATCAGAGATACAGTTCAATGTGTTGAAATTGCAATTGCCAATCCAGCAAAACCAGGAGAGTTCCGGGTTTTCAACCAATTCACAGAGCAGTTTTCAGTAAATGAGCTTGCAGCCCTTGTCACCAAGGCAGGGCAAAAACTTGGCCTTGAGGTGAAGGCCATATCAGTGCCCAATCCAAGAGTAGAAGCAGAGGAACACTACTACAATGCCAAACATACTAAACTTATTGAGCTGGGACTACAACCTCACCTTCTTTCTGATTCTCTTCTCGACTCTCTATTGAACTTTGCTGTTCAATATAAGGATCGTGTCGACACAAAGCAGATAATGCCTAGTGTTTCCTGGAAAAAAATTGGCGCGAAGCCAAAGACTGTTGCAGCATAAATCACTTAGACAAGCTATAGAGACTTGAGACTGGGAGTTCTTGTATGTCATTTTTATATAGGAGCTATAGTATTTTACAATGCCTTGCACAATTTTATGTTGTAACTTTGGGAAGTATTTGTTGTATTCCGAAGCTTGTGAAGGTTGTGGATGTAGTTTTTGTTTGAGAAAATACTCGAGGTAGTCGTGACCTGTCTCAAGCCTGAAACTTGTGTGATTTACTTGTCAATTTAGTTTTGGCTACACAGAAGTGTTCCCGGATATCTTCCTCATTGGACAGATGAATTTTTGCTT</genome_strand>
        <mrna_strand>TCAGGCTGCTGTT-GACATCCACTAACGGTGTAT-GTAAAGGAGGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGGGGATATTTGGATATCAGAGATACAGTTCAATGTGTTGAAATTGCAATTGCCAATCCAGCAAAACCAGGAGAGTTCCGGGTTTTCAACCAATTCACAGAGCAGTTTTCAGTAAATGAGCTTGCAGCCCTTGTCACCAAGGCAGGGCAAAAACTTGGCCTTGAGGTGAAGGCCATATCAGTGCCCAATCCAAGAGTAGAAGCAGAGGAACACTACTACAATGCCAAACATACTAAACTTATTGAGCTGGGACTACAACCTCACCTTCTTTCTGATTCTCTTCTCGACTCTCTATTGAACTTTGCTGTTCAATATAAGGATCGTGTCGACACAAAGCAGATAATGCCTAGTGTTTCCTGGAAAAAAATTGGCGCGAAGCCAAAGACTGTTGCAGCATAAATCACTTAGACAAGCTATAGAGACTTGAGACTGGGAGTTCTTGTATGTCATTTTTATATAGGAGCTATAGTATTTTACAATGCCTTGCACAATTTTATGTTGTAACTTTGGGAAGTATTTGTTGTATTCCGAAGCTTGTGAAGGTTGTGGATGTAGTTTTTGTTTGAGAAAATACTCGAGGTAGTCGTGACCTGTCTCAAGCCTGAAACTTGTGTGATTTACTTGTCAATTTAGTTTTGGCTACACAGAAGTGTTCCCGGATATCTTCCTCATTGGACAGATGAATTTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283510" ref_strand="-" ref_description="SGN-E283510 [cLER-12-M7]">
      <seq>tatcagtgcccaatccaagagtagaagcagaggaacactactacaatgccaaacatactaaacttattgagctgggactacaacctcaccttctttctgattctcttctcgactctctattgaactttgctgttcaatataaggatcgtgtcgacacaaagcagataatgcctagtgtttcctggaaaaaaattggcgcgaagccaaagactgttgcagcataaatcacttagacaagctatagagacttgagactgggagttcttgtatgtcatttttatataggagctatagtattttacaatgccttgcacaattttatgttgtaactttgggaagtatttgttgtattccgaagcttgtgaaggttgtggatgtagtttttgtttgagaaaatactcgaggtagtcgtgacctgtctcaagcctgaaacttgtgtgatttacttgtcaatttagttttggctacacagaagtgttcccggatatcttcctcattggacagatgaatttttgcttaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="75015" stop="73895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74715" g_stop="74198" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="540"/>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E283510" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283510" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74715" e_stop="74198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAGTGCCCAATCCAAGAGTAGAAGCAGAGGAACACTACTACAATGCCAAACATACTAAACTTATTGAGCTGGGACTACAACCTCACCTTCTTTCTGATTCTCTTCTCGACTCTCTATTGAACTTTGCTGTTCAATATAAGGATCGTGTCGACACAAAGCAGATAATGCCTAGTGTTTCCTGGAAAAAAATTGGCGCGAAGCCAAAGACTGTTGCAGCATAAATCACTTAGACAAGCTATAGAGACTTGAGACTGGGAGTTCTTGTATGTCATTTTTATATAGGAGCTATAGTATTTTACAATGCCTTGCACAATTTTATGTTGTAACTTTGGGAAGTATTTGTTGTATTCCGAAGCTTGTGAAGGTTGTGGATGTAGTTTTTGTTTGAGAAAATACTCGAGGTAGTCGTGACCTGTCTCAAGCCTGAAACTTGTGTGATTTACTTGTCAATTTAGTTTTGGCTACACAGAAGTGTTCCCGGATATCTTCCTCATTGGACAGATGAATTTTTGCTT</genome_strand>
        <mrna_strand>TATCAGTGCCCAATCCAAGAGTAGAAGCAGAGGAACACTACTACAATGCCAAACATACTAAACTTATTGAGCTGGGACTACAACCTCACCTTCTTTCTGATTCTCTTCTCGACTCTCTATTGAACTTTGCTGTTCAATATAAGGATCGTGTCGACACAAAGCAGATAATGCCTAGTGTTTCCTGGAAAAAAATTGGCGCGAAGCCAAAGACTGTTGCAGCATAAATCACTTAGACAAGCTATAGAGACTTGAGACTGGGAGTTCTTGTATGTCATTTTTATATAGGAGCTATAGTATTTTACAATGCCTTGCACAATTTTATGTTGTAACTTTGGGAAGTATTTGTTGTATTCCGAAGCTTGTGAAGGTTGTGGATGTAGTTTTTGTTTGAGAAAATACTCGAGGTAGTCGTGACCTGTCTCAAGCCTGAAACTTGTGTGATTTACTTGTCAATTTAGTTTTGGCTACACAGAAGTGTTCCCGGATATCTTCCTCATTGGACAGATGAATTTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E598223" ref_strand="+" ref_description="SGN-E598223 [73892]">
      <seq>gtatgccattttaaataggagttatagtatttttacaatgccttgcacaattttatgttgtaactttgggaagtatttgttgtattcggaagcttgtgaaggttgtggatgtagattttgttggaggaaatactcgaggtagtcatgacctgtttcatgcctgaaacttatgtgatttacttatcaatttagttttggctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="74749" stop="73947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74449" g_stop="74246" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E598223" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>204</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74449" e_stop="74246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGTCATTTTTATATAGGAGCTATAGTATT-TTACAATGCCTTGCACAATTTTATGTTGTAACTTTGGGAAGTATTTGTTGTATTCCGAAGCTTGTGAAGGTTGTGGATGTAGTTTTTGTTTGAGAAAATACTCGAGGTAGTCGTGACCTGTCTCAAGCCTGAAACTTGTGTGATTTACTTGTCAATTTAGTTTTGGCTACAC</genome_strand>
        <mrna_strand>GTATGCCA-TTTTAAATAGGAGTTATAGTATTTTTACAATGCCTTGCACAATTTTATGTTGTAACTTTGGGAAGTATTTGTTGTATTCGGAAGCTTGTGAAGGTTGTGGATGTAGATTTTGTTGGAGGAAATACTCGAGGTAGTCATGACCTGTTTCATGCCTGAAACTTATGTGATTTACTTATCAATTTAGTTTTGGCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611688" ref_strand="-" ref_description="SGN-E611688 [61442]">
      <seq>gatgaaacttgccaatgcattgaggaactggttaacagattttgattatgatggagttatttggaactgcactaaatcggttctgtgttcaggctgctgttgggacatccacttacggtgtatggtaaaggaggccagaccaggggatatttggatattagagatacggttcaatgtgttgaaattgcaattgccaatccagcaaaaccaggagagttccgggttttcaaccaattcacagagcagttttcagtaaatgagcttgcagcccttgtcaccaaggcaggggaaaaccttggacttgaggtgaaggccatatcagtgcccaatccaagagtagaagcagaggaacactactacaatgccaaacatactaaacttattgagttgggactacaacctcaccttctttctgattctcttctagactctctattgaactttgctgttcaatataaggatcgtgtcgacacaaagcagataatgcctagtgtttcctggaaaaaaattggcgcgaagccaaagactgttgcagcataaatcacttagacaagctatagagacttaagactgggagttcttgtatgtcattttaaataggagttatagtatatttacaatgccttgcacaattttatgttgtaactttgggaagtatttgttgtattcagaagtttgtggatgtagattttgttggaggaaatactcgaggtagtcgtgacctgtttcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="76125" stop="73990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75862" g_stop="75731" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.856"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75730" i_stop="74894" i_length="837">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74893" g_stop="74290" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="733" r_length="595" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E611688" ref_strand="-">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611688" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75862" e_stop="75731"/>
          <exon e_start="74893" e_stop="74290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAAC-TGC-AATACA-TGAGGATCTGGTTAACAGA-CTTGATTATGATGGTG-TATTTGGAACTGCACTAAATCGTTTCTGTGTTCAGGCTGCTGTTGG-ACATCCACTAACGGTGTATGGTAAAGGAGGGCAGGTACGAATTTCCTCTTGTTCCATGTGGTACTGCATTTTAATGAATAAACAACCAATTCTATTGAAGAAATCTTGAGCTCTATCCATAGGTCCTCAAGTGAAACTTCTTTCCTAGCTTTTATACAGTGCATAAGATATACATTGAGTCCATCTCTGACGTTTTTGTTATTTGTTCTTGCGAACGAACATATCAAAAAAATTGTTCTTGGGACCATAAACAGGGTGAACTTCAATAATCAGTGACATGATCCATAACTGCGCTCATCAAAAGAGAGTTAAAATGAACTCATTCTTCCATTGCCATGACTGTAACCATTCAATGCGGAGACAGAAATCGGAAAAAACTTATATTTTTATCAGGAAGGGACTGAGAAACCTTCTATATAGGAAATGCTAAAATCACTGGACTGTAGACGTAATCTGCATACATTCTCCCCAACTGCTGAATATAAGCTGATATTTCTTCCCTTTATGTGTTTGTAATTCATTGCACTAGAATTAGTAACACCCACGAAAGTAAATTTTTAGTACTATTGGAGATTGTTTCTGGACATGGAAGGTATTGAGATTTGGATGATTTCACCTCATATAGTGCATCTAACACGATTGTCCAGAAAGCAAGATAAGTGGTGAGATGGGGGCCAGTACGGTCTTTAGAAAATAATAAAAGGTGAATTTGAATGGCTTCCTTCCTTTGGTGGGGCTTGATTTTTGTTCACTCCCGCTTACTGTTAATATTAAGTTATGAGCACCCTGACCAACAATCCCTTGACAATAAGTCTTTTTTCATTTAACAGCATTCTTTGCTTTTCTAACGTGTTTTTTTTGTGTTGTACAGACCAGGGGATATTTGGATATCAGAGATACAGTTCAATGTGTTGAAATTGCAATTGCCAATCCAGCAAAACCAGGAGAGTTCCGGGTTTTCAACCAATTCACAGAGCAGTTTTCAGTAAATGAGCTTGCAGCCCTTGTCACCAAGGCAGGGCAAAAACTTGGCCTTGAGGTGAAGGCCATATCAGTGCCCAATCCAAGAGTAGAAGCAGAGGAACACTACTACAATGCCAAACATACTAAACTTATTGAGCTGGGACTACAACCTCACCTTCTTTCTGATTCTCTTCTCGACTCTCTATTGAACTTTGCTGTTCAATATAAGGATCGTGTCGACACAAAGCAGATAATGCCTAGTGTTTCCTGGAAAAAAATTGGCGCGAAGCCAAAGACTGTTGCAGCATAAATCACTTAGACAAGCTATAGAGACTTGAGACTGGGAGTTCTTGTATGTCATTTTTATATAGGAGCTATAGTAT-TTTACAATGCCTTGCACAATTTTATGTTGTAACTTTGGGAAGTATTTGTTGTATTCCGAAGCTTGTGAAGGTTGTGGATGTAGTTTTTGTTTGAGAAAATACTCGAGGTAGTCGTGACCTGTCTCAAGC</genome_strand>
        <mrna_strand>GATGAAACTTGCCAATGCATTGAGGAACTGGTTAACAGATTTTGATTATGATGGAGTTATTTGGAACTGCACTAAATCGGTTCTGTGTTCAGGCTGCTGTTGGGACATCCACTTACGGTGTATGGTAAAGGAGGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGGGGATATTTGGATATTAGAGATACGGTTCAATGTGTTGAAATTGCAATTGCCAATCCAGCAAAACCAGGAGAGTTCCGGGTTTTCAACCAATTCACAGAGCAGTTTTCAGTAAATGAGCTTGCAGCCCTTGTCACCAAGGCAGGGGAAAACCTTGGACTTGAGGTGAAGGCCATATCAGTGCCCAATCCAAGAGTAGAAGCAGAGGAACACTACTACAATGCCAAACATACTAAACTTATTGAGTTGGGACTACAACCTCACCTTCTTTCTGATTCTCTTCTAGACTCTCTATTGAACTTTGCTGTTCAATATAAGGATCGTGTCGACACAAAGCAGATAATGCCTAGTGTTTCCTGGAAAAAAATTGGCGCGAAGCCAAAGACTGTTGCAGCATAAATCACTTAGACAAGCTATAGAGACTTAAGACTGGGAGTTCTTGTATGTCA-TTTTAAATAGGAGTTATAGTATATTTACAATGCCTTGCACAATTTTATGTTGTAACTTTGGGAAGTATTTGTTGTATT-C--A------GAAGTTTGTGGATGTAGATTTTGTTGGAGGAAATACTCGAGGTAGTCGTGACCTGTTTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711252" ref_strand="+" ref_description="SGN-E711252 [FB01BG07]">
      <seq>gacttgaatcagggagttgtatatggggtgaggactgatgaaactgcaatacatgaggatctggttaacagacttgattatgatggtgtatttggaactgcactaaatcgtttctgtgttcaggctgctgttggacatccactaacggtgtatggtaaaggagggcagaccaggggatatttggatatcagagatacagttcaatgtgttgaaattgcaattgccaatccagcaaaaccaggagagttccgggttttcaaccaattcacagagcagttttcagtaaatgagcttgcagcccttgtcaccaaggcagggcaaaaacttggccttgaggtgaaggccatatcagtgcccaatccaagagtagaagcagaggaacactactacaatgccaaacatactaaacttattgagctgggactacaacctcaccttctttctgattctcttctcgactctctattgaactttgctgttcaatataaggatcgtgtcgacacaaagcagataatgcctagtgtttcctggaaaaaaattggcgcgaagccaaagactgttgcagcataaatcacttagacaagctatagagacttgagactgggagttcttgtatgtcatttttatataggagctatagtattttacaatgccttgcacaattttatgttgtaactttgggaagtatttgttgtattccgaagcttgtgaaggttgtggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="76198" stop="74039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75898" g_stop="75731" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75730" i_stop="74894" i_length="837">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74893" g_stop="74339" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="723" r_length="555" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E711252" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75898" e_stop="75731"/>
          <exon e_start="74893" e_stop="74339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGAATCAGGGAGTTGTATATGGGGTGAGGACTGATGAAACTGCAATACATGAGGATCTGGTTAACAGACTTGATTATGATGGTGTATTTGGAACTGCACTAAATCGTTTCTGTGTTCAGGCTGCTGTTGGACATCCACTAACGGTGTATGGTAAAGGAGGGCAGGTACGAATTTCCTCTTGTTCCATGTGGTACTGCATTTTAATGAATAAACAACCAATTCTATTGAAGAAATCTTGAGCTCTATCCATAGGTCCTCAAGTGAAACTTCTTTCCTAGCTTTTATACAGTGCATAAGATATACATTGAGTCCATCTCTGACGTTTTTGTTATTTGTTCTTGCGAACGAACATATCAAAAAAATTGTTCTTGGGACCATAAACAGGGTGAACTTCAATAATCAGTGACATGATCCATAACTGCGCTCATCAAAAGAGAGTTAAAATGAACTCATTCTTCCATTGCCATGACTGTAACCATTCAATGCGGAGACAGAAATCGGAAAAAACTTATATTTTTATCAGGAAGGGACTGAGAAACCTTCTATATAGGAAATGCTAAAATCACTGGACTGTAGACGTAATCTGCATACATTCTCCCCAACTGCTGAATATAAGCTGATATTTCTTCCCTTTATGTGTTTGTAATTCATTGCACTAGAATTAGTAACACCCACGAAAGTAAATTTTTAGTACTATTGGAGATTGTTTCTGGACATGGAAGGTATTGAGATTTGGATGATTTCACCTCATATAGTGCATCTAACACGATTGTCCAGAAAGCAAGATAAGTGGTGAGATGGGGGCCAGTACGGTCTTTAGAAAATAATAAAAGGTGAATTTGAATGGCTTCCTTCCTTTGGTGGGGCTTGATTTTTGTTCACTCCCGCTTACTGTTAATATTAAGTTATGAGCACCCTGACCAACAATCCCTTGACAATAAGTCTTTTTTCATTTAACAGCATTCTTTGCTTTTCTAACGTGTTTTTTTTGTGTTGTACAGACCAGGGGATATTTGGATATCAGAGATACAGTTCAATGTGTTGAAATTGCAATTGCCAATCCAGCAAAACCAGGAGAGTTCCGGGTTTTCAACCAATTCACAGAGCAGTTTTCAGTAAATGAGCTTGCAGCCCTTGTCACCAAGGCAGGGCAAAAACTTGGCCTTGAGGTGAAGGCCATATCAGTGCCCAATCCAAGAGTAGAAGCAGAGGAACACTACTACAATGCCAAACATACTAAACTTATTGAGCTGGGACTACAACCTCACCTTCTTTCTGATTCTCTTCTCGACTCTCTATTGAACTTTGCTGTTCAATATAAGGATCGTGTCGACACAAAGCAGATAATGCCTAGTGTTTCCTGGAAAAAAATTGGCGCGAAGCCAAAGACTGTTGCAGCATAAATCACTTAGACAAGCTATAGAGACTTGAGACTGGGAGTTCTTGTATGTCATTTTTATATAGGAGCTATAGTATTTTACAATGCCTTGCACAATTTTATGTTGTAACTTTGGGAAGTATTTGTTGTATTCCGAAGCTTGTGAAGGTTGTGGATG</genome_strand>
        <mrna_strand>GACTTGAATCAGGGAGTTGTATATGGGGTGAGGACTGATGAAACTGCAATACATGAGGATCTGGTTAACAGACTTGATTATGATGGTGTATTTGGAACTGCACTAAATCGTTTCTGTGTTCAGGCTGCTGTTGGACATCCACTAACGGTGTATGGTAAAGGAGGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGGGGATATTTGGATATCAGAGATACAGTTCAATGTGTTGAAATTGCAATTGCCAATCCAGCAAAACCAGGAGAGTTCCGGGTTTTCAACCAATTCACAGAGCAGTTTTCAGTAAATGAGCTTGCAGCCCTTGTCACCAAGGCAGGGCAAAAACTTGGCCTTGAGGTGAAGGCCATATCAGTGCCCAATCCAAGAGTAGAAGCAGAGGAACACTACTACAATGCCAAACATACTAAACTTATTGAGCTGGGACTACAACCTCACCTTCTTTCTGATTCTCTTCTCGACTCTCTATTGAACTTTGCTGTTCAATATAAGGATCGTGTCGACACAAAGCAGATAATGCCTAGTGTTTCCTGGAAAAAAATTGGCGCGAAGCCAAAGACTGTTGCAGCATAAATCACTTAGACAAGCTATAGAGACTTGAGACTGGGAGTTCTTGTATGTCATTTTTATATAGGAGCTATAGTATTTTACAATGCCTTGCACAATTTTATGTTGTAACTTTGGGAAGTATTTGTTGTATTCCGAAGCTTGTGAAGGTTGTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347821" ref_strand="+" ref_description="SGN-E347821 [cTOF-26-F22]">
      <seq>aaaacctttctcactctcttgtaaggattttatgtctaacaagcatcaccaggtttaagaaaattggtaggctcatatcgaggcggctatcatggcacatttactttctactacatgttctttagatgtctcttccagcaaaaagctgcatttcaagtcaattaaccaatgctctactcctaatccaacatgttttaatatgggaatttctttctcacccttgaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagccaagaagccagaacacagaatgactctggttctcaacagaccactgatggagcatccactaggaagaaggtcatggtcattggtggtgatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgattatttgacgaccagcttggtctagattctctaacacccatctcatctattcataaccgcataaggcgttggaaatctctcacaggaaaagatattcaactgtttgttggtgatatatgtgagtttgagttcttggcagaagccttcaaatcctttgaacctgatgctgtagtccattttggagagcagaccaggggatatttggatatcagagatacagttcaatgtgttgaaattgncattgccaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="78777" stop="74532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78477" g_stop="78426" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78425" i_stop="76811" i_length="1615">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76810" g_stop="76212" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="649" r_length="597" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76211" i_stop="74894" i_length="1318">
            <donor d_prob="0.705" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74893" g_stop="74832" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="711" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E347821" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78477" e_stop="78426"/>
          <exon e_start="76810" e_stop="76212"/>
          <exon e_start="74893" e_stop="74832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTTTCTCACTCTCTTGTAAGGATTTTATGTCTAACAAGCATCACCAGGTGACCCTTTTAGCTTCTAGAATTTGCTTTTTAAAAAATTTTAATTACAAAAAATTAATTCTTTACAATCTTAATTCTACTGCTTGGTTCAGTTTTTAATGTTCCTTTTTTTTTGTTGCAATATTTAGTAAAAAGTGTTTGGTTTATGTAGTCAGTTGACTATTTTCTGTTCTAAGTTTGTTCTTTATGGTTTTGACTAAATATTATCAATATGTGTTTTGTTGTTCTGGAGTAGACTAACTGGGGGAGAGAAATTTATGTCTGTATTGAAAATGTCTTAGGTTTTTGAGCATTTCGTAACATGAAATCCATTGTACTGCCATTTTTTGGGCTTTGTTCTAAGTGAAACTATTCCATTGTTACTGACCTTATCCTAATTTCAACTGTTGAAAGAATGTTGTTCAACCATCTCTTTGGAACACTGGTTATGCTATAATGTTGTAAAAACAACTCATGTTTACGGTCTATTTGCACTAGGAAGTTTATTACATCAAGATGCGTTGCTTCGTCCTAATTGCACATTCATGTTGAGGATGGAGAAAGTTGTTACTAGTAAAATTATCAATTAGTAGTGGAAGTGTAGAACAAATATTTGTGTTAGTTATCCTTTCAATTAAGCAACTTTTACCTTATTCAGTAGTGATCCAGACTGATATTTCATCAGCCCAAGTTTCCAGATGACATTCGCTGTTTGCATCTCTTGCGATGCCTGCAATAGGCAAGGACTAGGATGGAGATGATCTCCCATCTGAAGAGATATGGTTATTGTTGCTTTGAAATGTGTAGTGGATAAATCAACTTTTTTGTTTGCTACTATCAATCTTACAATTATGTGACCACATTTCCAGAACCATTTAAACCTTCATATTTTGCGCATACTGGCAGGAAAGCCCTTTCAGATCTTCCGATCCACCTGCTTCTCATGCCAATTGGACACTTTGCCCATCTGTATCATTCCTTCCAACAATACTTACAATTTGATTGTGGTGTATCCTGTTTCAGCTTTGATTCTGTGAAAAAAACACCTTCCCCAAGGATGATTATATGTTCATTGCCAAGCATATTTGCTTCGCCAAAAGTTTGTGTTCTCGTGATTTTTTTACTGCCCCAAGCATTTTGGTTCAGTGATAAGGATACAGCGGTGTGTGTGAATTTGGCGCACATACCACTGGTTCGAAGTAAGTGGGAGAAGGGTGGGTCCATATTCCCTCCAGTTTCAAATGCACAGTTAGGGTTTGGCCTAGCTAACTCACAGGCAATCTATCAATCATCAAAAAATAATTTTATTCTTAAACTTTGGCCAGTTCTTTTTAGAAGAATGTGGTAAAGTGTATTAGCCATCATATCCTTGATTCTATTTTGTGATTGAAATTTATATTGATTAACAGAAGGAGAAATTTAAAATCTAGCAACAGAATAATTTTTTACTCTAAGAGGACACTTGCTGTTTATCTTTATTAGTTTTTGGTTTTCAGTTTCCTGACACTTGCTAATTTAGTTTTTATTTTTTTTGTATTGGTTTTCAGTTTTCTTGTAACTAGCTTTCCTATTTGTATTTCCTAGATAGAATAAGAGTCTGCATTCTGCTCTGATTCATACTTTCTTAGTTTTGCAGGTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACTCATAACGGAAGAACAGATACTCTTCCTTATCCCAAACAAGCAAGCTCCTTCTATCATTTGAGTAAAGTCCATGATTCCCACAACATAGCCTTCACTTGCAAGGCGTGGGGAATCAGAGCTACCGACCTGAATCAGGGAGTTGTATATGGGGTGAGGACTGATGAAACTGCAATACATGAGGATCTGGTTAACAGACTTGATTATGATGGTGTATTTGGAACTGCACTAAATCGTTTCTGTGTTCAGGCTGCTGTTGGACATCCACTAACGGTGTATGGTAAAGGAGGGCAGGTACGAATTTCCTCTTGTTCCATGTGGTACTGCATTTTAATGAATAAACAACCAATTCTATTGAAGAAATCTTGAGCTCTATCCATAGGTCCTCAAGTGAAACTTCTTTCCTAGCTTTTATACAGTGCATAAGATATACATTGAGTCCATCTCTGACGTTTTTGTTATTTGTTCTTGCGAACGAACATATCAAAAAAATTGTTCTTGGGACCATAAACAGGGTGAACTTCAATAATCAGTGACATGATCCATAACTGCGCTCATCAAAAGAGAGTTAAAATGAACTCATTCTTCCATTGCCATGACTGTAACCATTCAATGCGGAGACAGAAATCGGAAAAAACTTATATTTTTATCAGGAAGGGACTGAGAAACCTTCTATATAGGAAATGCTAAAATCACTGGACTGTAGACGTAATCTGCATACATTCTCCCCAACTGCTGAATATAAGCTGATATTTCTTCCCTTTATGTGTTTGTAATTCATTGCACTAGAATTAGTAACACCCACGAAAGTAAATTTTTAGTACTATTGGAGATTGTTTCTGGACATGGAAGGTATTGAGATTTGGATGATTTCACCTCATATAGTGCATCTAACACGATTGTCCAGAAAGCAAGATAAGTGGTGAGATGGGGGCCAGTACGGTCTTTAGAAAATAATAAAAGGTGAATTTGAATGGCTTCCTTCCTTTGGTGGGGCTTGATTTTTGTTCACTCCCGCTTACTGTTAATATTAAGTTATGAGCACCCTGACCAACAATCCCTTGACAATAAGTCTTTTTTCATTTAACAGCATTCTTTGCTTTTCTAACGTGTTTTTTTTGTGTTGTACAGACCAGGGGATATTTGGATATCAGAGATACAGTTCAATGTGTTGAAATTGCAATTGCCAATCC</genome_strand>
        <mrna_strand>AAAACCTTTCTCACTCTCTTGTAAGGATTTTATGTCTAACAAGCATCACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGC--AG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGGGGATATTTGGATATCAGAGATACAGTTCAATGTGTTGAAATTGNCATTGCCAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271734" ref_strand="+" ref_description="SGN-E271734 [cLEM-23-L2]">
      <seq>tacccaacatattaatgtgatagggacacttaatgtactatttgccataaaggagtttagggaagagtgtcatttggtcaaactcgggaccatgggggaatatggaacccctaatatagatattgaagaaggttatataactattactcataacggaagaacagatactcttccttatcccaaacaagcaagctccttctatcatttgagtaaagtccatgattcccacaacatagccttcacttgcaaggcgtggggaatcagagctaccgacctgaatcagggagttgtatatggggtgaggactgatgaaactgcaatacatgaggatctggttaacagacttgattatgatggtgtatttggaactgcactaaatcgtttctgtgttcaggctgctgttggacatccactaacggtgtatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="76469" stop="75443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76169" g_stop="75743" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E271734" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76169" e_stop="75743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACTCATAACGGAAGAACAGATACTCTTCCTTATCCCAAACAAGCAAGCTCCTTCTATCATTTGAGTAAAGTCCATGATTCCCACAACATAGCCTTCACTTGCAAGGCGTGGGGAATCAGAGCTACCGACCTGAATCAGGGAGTTGTATATGGGGTGAGGACTGATGAAACTGCAATACATGAGGATCTGGTTAACAGACTTGATTATGATGGTGTATTTGGAACTGCACTAAATCGTTTCTGTGTTCAGGCTGCTGTTGGACATCCACTAACGGTGTATGGT</genome_strand>
        <mrna_strand>TACCCAACATATTAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACTCATAACGGAAGAACAGATACTCTTCCTTATCCCAAACAAGCAAGCTCCTTCTATCATTTGAGTAAAGTCCATGATTCCCACAACATAGCCTTCACTTGCAAGGCGTGGGGAATCAGAGCTACCGACCTGAATCAGGGAGTTGTATATGGGGTGAGGACTGATGAAACTGCAATACATGAGGATCTGGTTAACAGACTTGATTATGATGGTGTATTTGGAACTGCACTAAATCGTTTCTGTGTTCAGGCTGCTGTTGGACATCCACTAACGGTGTATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443132" ref_strand="+" ref_description="SGN-E443132 [cSTA-36-K8]">
      <seq>atatatgttagtttgagtacttggcagaagcctccaaatgctttgaacctgattctgtagtccattttggagagcaaaggtctgccccttattctatgattgatcggtcaagagctatttattcccaacataataatgtgatagggacacttaatgtactatttgccataaaggagtctatggaagagtgtcatttggtcaaactcgggacaatgggggaatatgggacccctaacataaatattgaagaaggatatataactattactcataatggaagaacagatactgttccttatcccaaacaagcaagctctttctatcatttgagtaaagtccatgattcccacaacatagcctttacttgcaaggcgtggggaatcacaactaccgacctgaatcacggagttgtatatggggtgaggactgatgaaactgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="76590" stop="75549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76290" g_stop="75849" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E443132" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76290" e_stop="75849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACTCATAACGGAAGAACAGATACTCTTCCTTATCCCAAACAAGCAAGCTCCTTCTATCATTTGAGTAAAGTCCATGATTCCCACAACATAGCCTTCACTTGCAAGGCGTGGGGAATCAGAGCTACCGACCTGAATCAGGGAGTTGTATATGGGGTGAGGACTGATGAAACTGCAAT</genome_strand>
        <mrna_strand>ATATATGTTAGTTTGAGTACTTGGCAGAAGCCTCCAAATGCTTTGAACCTGATTCTGTAGTCCATTTTGGAGAGCAAAGGTCTGCCCCTTATTCTATGATTGATCGGTCAAGAGCTATTTATTCCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTCTATGGAAGAGTGTCATTTGGTCAAACTCGGGACAATGGGGGAATATGGGACCCCTAACATAAATATTGAAGAAGGATATATAACTATTACTCATAATGGAAGAACAGATACTGTTCCTTATCCCAAACAAGCAAGCTCTTTCTATCATTTGAGTAAAGTCCATGATTCCCACAACATAGCCTTTACTTGCAAGGCGTGGGGAATCACAACTACCGACCTGAATCACGGAGTTGTATATGGGGTGAGGACTGATGAAACTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453238" ref_strand="+" ref_description="SGN-E453238 [cSTS-19-G24]">
      <seq>ctttctcacccttgaaaaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagccaagaagccagaacccagaatgactctggttctcaacagaccactgatggagcctccactaggaagaaggtcatggtcattggtggggatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgcctatttgacgaccagcttggtctagattctctaacacccatctcatcaatccataaccgcataaggcgttggaaatctctcacaggaaaagacattcaactgtttgttggtgatatatgtgagtttgagttcttggcagaagccttcaaatcctttgaacctgatgctgtagtccattttggagagcagaggtctgccccttattctatgattgataggtcaagagctatttatacccaacataataatgtgatagggacacttaatgtactatttgccataaaggagtttagggaagagtgtcatttggtcaaactcgggacaatgggggaatatgggacccctaacatagatattgaagaaggttatataactattactcataatggaagaacagatactcttccttatcccaaacaagcaagctctttctatcatttgagtaaagtccatgattcccacacatagcctttacttgcaaggcgtgggggataagagctaccgacctgaatcagggagttgtatatggggtgaggactgatgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="76939" stop="75555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76653" g_stop="75855" g_length="799"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E453238" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76653" e_stop="75855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCACCCTTG---AAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACTCATAACGGAAGAACAGATACTCTTCCTTATCCCAAACAAGCAAGCTCCTTCTATCATTTGAGTAAAGTCCATGATTCCCACAACATAGCCTTCACTTGCAAGGCGTGGGGAATCAGAGCTACCGACCTGAATCAGGGAGTTGTATATGGGGTGAGGACTGATGAAAC</genome_strand>
        <mrna_strand>CTTTCTCACCCTTGAAAAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACCCAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCCTCCACTAGGAAGAAGGTCATGGTCATTGGTGGGGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGCCTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCAATCCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGACATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACAATGGGGGAATATGGGACCCCTAACATAGATATTGAAGAAGGTTATATAACTATTACTCATAATGGAAGAACAGATACTCTTCCTTATCCCAAACAAGCAAGCTCTTTCTATCATTTGAGTAAAGTCCATGATTCCCAC-ACATAGCCTTTACTTGCAAGGCGTGGGGGATAAGAGCTACCGACCTGAATCAGGGAGTTGTATATGGGGTGAGGACTGATGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700974" ref_strand="+" ref_description="SGN-E700974 [FA14CG03]">
      <seq>ggcacttttactttctactacatgttctttagatgtctcttccagcaaaaagctgcatttcaagtcaattaaccaatgctctactcctaatccaacatgttttaatatgggaatttctttctcacccttgaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagccaagaagccagaacacagaatgactctggttctcaacagaccactgatggagcatccactaggaagaaggtcatggtcattggtggtgatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgattatttgacgaccagcttggtctagattctctaacacccatctcatctattcataaccgcataaggcgttggaaatctctcacaggaaaagatattcaactgtttgttggtgatatatgtgagtttgagttcttggcagaagccttcaaatcctttgaacctgatgctgtagtccattttggagagcagaggtctgccccttattctatgattgataggtcaagagctatttatacccaacataataatgtgatagggacacttaatgtactatttgccataaaggagtttagggaagagtgtcatttggtcaaactcgggaccatgggggaatatggaacccctaatatagatattgaagaaggttatataactattactcataacggaagaacagatactcttccttatcccaaacaaacaagctccttctatcatttgagtaaagtccatgatttccacaacatagccctcacttgcaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="77069" stop="75618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76769" g_stop="75918" g_length="852"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="852" r_length="852" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E700974" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76769" e_stop="75918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACTCATAACGGAAGAACAGATACTCTTCCTTATCCCAAACAAGCAAGCTCCTTCTATCATTTGAGTAAAGTCCATGATTCCCACAACATAGCCTTCACTTGCAAGGC</genome_strand>
        <mrna_strand>GGCACTTTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACTCATAACGGAAGAACAGATACTCTTCCTTATCCCAAACAAACAAGCTCCTTCTATCATTTGAGTAAAGTCCATGATTTCCACAACATAGCCCTCACTTGCAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263097" ref_strand="+" ref_description="SGN-E263097 [cLEG-59-J12]">
      <seq>ctaatcctacatgttttaatatgggaatttctttctcacccgtgaagctaagtttgcaaagcaaaaggtgctgacaaatatgtgatcagagcttcagctgtttccatgagccgagaagccagaacacagaatgactctggttctcaacagaccactgatggagcatccactaggaagaaggtcatggtcattggtggtgatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagatgccattgttgacaaccttatccgtcgattatttgacgaccaccttggtctagattctctaacacccatctcatctattcataaccgcataaggcgttggaaatctctcacaggaaaagatattcaactgtttggtggtgatatatgtgagtttgagttcttggcagaagccttcgaatcctttgaacctgatgctgtattccattttggagagcagagagtctgccccttattctatgattgataggtcaagagctatttatacccgacgtaatagtgtgatacggacacttaatgtactatttgccatacaggagtttagggaagagtgtcatttggtcaaactcgggaacatgggggaatatggaacccctagtatagatattgaggaatgttatataactattactcatgacggaagaacggatactcttccttatccctaacaagcaagctccttctagcatttgagtaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="76983" stop="75654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76683" g_stop="75954" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E263097" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76683" e_stop="75954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGT-CTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAG-GTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACTCATAACGGAAGAACAGATACTCTTCCTTATCCCAAACAAGCAAGCTCCTTCTATCATTTGAGTAAAGT</genome_strand>
        <mrna_strand>CTAATCCTACATGTTTTAATATGGGAATTTCTTTCTCACCCGTGAAGCTAAGTTTGCAAAGCAAAAGGTGCTGACAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCGAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGATGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCACCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGGTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCGAATCCTTTGAACCTGATGCTGTATTCCATTTTGGAGAGCAGAGAGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCGACGTAATAGTGTGATACGGACACTTAATGTACTATTTGCCATACAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGAACATGGGGGAATATGGAACCCCTAGTATAGATATTGAGGAATGTTATATAACTATTACTCATGACGGAAGAACGGATACTCTTCCTTATCCCTAACAAGCAAGCTCCTTCTAGCATTTGAGTAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280935" ref_strand="+" ref_description="SGN-E280935 [cLER-7-A21]">
      <seq>aaccttatccgtcgattatttgacgaccagcttggtctagattctctaacacccatctcatctattcataaccgcataaggcgttggaaatctctcacaggaaaagatattcaactgtttgttggtgatatatgtgagtttgagttcttggcagaagccttcaaatcctttgaacctgatgctgtagtccattttggagagcagaggtctgccccttattctatgattgataggtcaagagctatttatacccaacataataatgtgatagggacacttaatgtactatttgccataaaggagtttagggaagagtgtcatttggtcaaactcgggaccatgggggaatatggaacccctaatatagatattgaagaaggttatataactattactcataacggaagaacagatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="76717" stop="75701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76417" g_stop="76001" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E280935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76417" e_stop="76001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACTCATAACGGAAGAACAGATACT</genome_strand>
        <mrna_strand>AACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACTCATAACGGAAGAACAGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699400" ref_strand="+" ref_description="SGN-E699400 [FA09DG05]">
      <seq>ctatgtctaacaagcatcaccaggtttaagaaaattggtaggctcatatcgaggcggctatcatggcacatttactttctactacatgttctttagatgtctcttccagcaaaaagctgcatttcaagtcaattaaccaatgctctactcctaatccaacatgttttaatatgggaatttctttctcacccttgaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagccaagaagccagaacacagaatgactctggttctcaacagaccactgatggagcatccactaggaagaaggtcatggtcattggtggtgatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgattatttgacgaccagcttggtctagattctctaacacccatctcatctattcataaccgcataaggcgttggaaatctctcacaggaaaagatattcaactgtttgttggtgatatatgtgagtttgagttcttggcagaagccttcaaatcctttgaacctgatgctgtagtccattttggagagcagaggtctgccccttattctatgattgataggtcaagagctatttatacccaacataataatgtgatagggacacttaatgtactatttgccataaaggagtttagggaagagtgtcatttggtcaaactcgggaccatgggggaatatggaacccctaatatagatattgaagaaggttatataactattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="78747" stop="75722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78448" g_stop="78426" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78425" i_stop="76811" i_length="1615">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76810" g_stop="76022" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="812" r_length="789" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E699400" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78448" e_stop="78426"/>
          <exon e_start="76810" e_stop="76022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTCTAACAAGCATCACCAGGTGACCCTTTTAGCTTCTAGAATTTGCTTTTTAAAAAATTTTAATTACAAAAAATTAATTCTTTACAATCTTAATTCTACTGCTTGGTTCAGTTTTTAATGTTCCTTTTTTTTTGTTGCAATATTTAGTAAAAAGTGTTTGGTTTATGTAGTCAGTTGACTATTTTCTGTTCTAAGTTTGTTCTTTATGGTTTTGACTAAATATTATCAATATGTGTTTTGTTGTTCTGGAGTAGACTAACTGGGGGAGAGAAATTTATGTCTGTATTGAAAATGTCTTAGGTTTTTGAGCATTTCGTAACATGAAATCCATTGTACTGCCATTTTTTGGGCTTTGTTCTAAGTGAAACTATTCCATTGTTACTGACCTTATCCTAATTTCAACTGTTGAAAGAATGTTGTTCAACCATCTCTTTGGAACACTGGTTATGCTATAATGTTGTAAAAACAACTCATGTTTACGGTCTATTTGCACTAGGAAGTTTATTACATCAAGATGCGTTGCTTCGTCCTAATTGCACATTCATGTTGAGGATGGAGAAAGTTGTTACTAGTAAAATTATCAATTAGTAGTGGAAGTGTAGAACAAATATTTGTGTTAGTTATCCTTTCAATTAAGCAACTTTTACCTTATTCAGTAGTGATCCAGACTGATATTTCATCAGCCCAAGTTTCCAGATGACATTCGCTGTTTGCATCTCTTGCGATGCCTGCAATAGGCAAGGACTAGGATGGAGATGATCTCCCATCTGAAGAGATATGGTTATTGTTGCTTTGAAATGTGTAGTGGATAAATCAACTTTTTTGTTTGCTACTATCAATCTTACAATTATGTGACCACATTTCCAGAACCATTTAAACCTTCATATTTTGCGCATACTGGCAGGAAAGCCCTTTCAGATCTTCCGATCCACCTGCTTCTCATGCCAATTGGACACTTTGCCCATCTGTATCATTCCTTCCAACAATACTTACAATTTGATTGTGGTGTATCCTGTTTCAGCTTTGATTCTGTGAAAAAAACACCTTCCCCAAGGATGATTATATGTTCATTGCCAAGCATATTTGCTTCGCCAAAAGTTTGTGTTCTCGTGATTTTTTTACTGCCCCAAGCATTTTGGTTCAGTGATAAGGATACAGCGGTGTGTGTGAATTTGGCGCACATACCACTGGTTCGAAGTAAGTGGGAGAAGGGTGGGTCCATATTCCCTCCAGTTTCAAATGCACAGTTAGGGTTTGGCCTAGCTAACTCACAGGCAATCTATCAATCATCAAAAAATAATTTTATTCTTAAACTTTGGCCAGTTCTTTTTAGAAGAATGTGGTAAAGTGTATTAGCCATCATATCCTTGATTCTATTTTGTGATTGAAATTTATATTGATTAACAGAAGGAGAAATTTAAAATCTAGCAACAGAATAATTTTTTACTCTAAGAGGACACTTGCTGTTTATCTTTATTAGTTTTTGGTTTTCAGTTTCCTGACACTTGCTAATTTAGTTTTTATTTTTTTTGTATTGGTTTTCAGTTTTCTTGTAACTAGCTTTCCTATTTGTATTTCCTAGATAGAATAAGAGTCTGCATTCTGCTCTGATTCATACTTTCTTAGTTTTGCAGGTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACT</genome_strand>
        <mrna_strand>CTATGTCTAACAAGCATCACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330547" ref_strand="+" ref_description="SGN-E330547 [cTOD-8-A24]">
      <seq>gcttcagctgtttccatgagccaagaagccagaacacagaatgactctggttctcaacagaccactgatggagcatccactaggaagaaggtcatggtcattggtggtgatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgattatttgacgaccagcttggtctagattctctaacacccatctcatctattcataaccgcataaggcgttggaaatctctcacaggaaaagatattcaactgtttgttggtgatatatgtgagtttgagttcttggcagaagccttcaaatcctttgaacctgatgctgtagtccattttggagagcagaggtctgccccttattctatgattgataggtcaagagctatttatacccaacataataatgtgatagggacacttaatgtactatttgccataaaggagtttagggaagagtgtcatttggtcaaactcgggaccatgggggaatatggaacccctaatatagatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="76894" stop="75745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76594" g_stop="76045" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E330547" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76594" e_stop="76045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTG</genome_strand>
        <mrna_strand>GCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719159" ref_strand="+" ref_description="SGN-E719159 [FC06DG03]">
      <seq>tcaccaggtttaagaaaattggtaggctcatatcgaggcggctatcatggcacatttactttctactacatgttctttagatgtctcttccagcaaaaagctgcatttcaagtcaattaaccaatgctctactcctaatccaacatgttttaatatgggaatttctttctcacccttgaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagccaagaagccagaacacagaatgactctggttctcaacagaccactgatggagcatccactaggaagaaggtcatggtcattggtggtgatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgattatttgacgaccagcttggtctagattctctaacacccatctcatctattcataaccgcataaggcgttggaaatctctcacaggaaaagatattcaactgtttgttggtgatatatgtgagtttgagttcttggcaaaagccttcaaatcctttgaacctgatgctgtagtccattttggagagcagaggtctgccccttattctatgattgataggtcaggagctatttatacccaacataataaatgtgatagggacacttaatgtactatttgccataaaggagtttagggaagagtgtcatttggtcaaactcgggaccatgggggaatatggaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="77113" stop="75760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76810" g_stop="76060" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="759" r_length="752" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E719159" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76810" e_stop="76060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAAT-AATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCC</genome_strand>
        <mrna_strand>GTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAAAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAGGAGCTATTTATACCCAACATAATAAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554339" ref_strand="+" ref_description="SGN-E554339 [cTSC-3-P4]">
      <seq>gattttatgtctaacaagcatcaccaggtttaagaaaattggtaggctcatatcgaggcggctatcatggcacatttactttctactacatgttctttagatgtctcttccagcaaaaagctgcatttcaagtcaattaaccaatgctctactcctaatccaacatgttttaatatgggaatttctttctcacccttgaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagccaagaagccagaacacagaatgactctggttctcaacagaccactgatggagcatccactaggaagaaggtcatggtcattggtggtgatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgattatttgacgaccagcttggtctagattctctaacacccatctcatctattcataaccgcataaggcgttggaaatctctcacaggaaaagatattcaactgtttgttggtgatatatgtgagtttgagttcttggcagaagccttcaaatcctttgaacctgatgctgtagtccattttggagagcagaggtctgccccttattctatgattgataggtcaagagctatttatacccaacataataatgtgatagggacacttaatgtactatttgccataaaaggagtttaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="78752" stop="75808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78452" g_stop="78426" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78425" i_stop="76811" i_length="1615">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76810" g_stop="76108" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="731" r_length="704" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E554339" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78452" e_stop="78426"/>
          <exon e_start="76810" e_stop="76108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTATGTCTAACAAGCATCACCAGGTGACCCTTTTAGCTTCTAGAATTTGCTTTTTAAAAAATTTTAATTACAAAAAATTAATTCTTTACAATCTTAATTCTACTGCTTGGTTCAGTTTTTAATGTTCCTTTTTTTTTGTTGCAATATTTAGTAAAAAGTGTTTGGTTTATGTAGTCAGTTGACTATTTTCTGTTCTAAGTTTGTTCTTTATGGTTTTGACTAAATATTATCAATATGTGTTTTGTTGTTCTGGAGTAGACTAACTGGGGGAGAGAAATTTATGTCTGTATTGAAAATGTCTTAGGTTTTTGAGCATTTCGTAACATGAAATCCATTGTACTGCCATTTTTTGGGCTTTGTTCTAAGTGAAACTATTCCATTGTTACTGACCTTATCCTAATTTCAACTGTTGAAAGAATGTTGTTCAACCATCTCTTTGGAACACTGGTTATGCTATAATGTTGTAAAAACAACTCATGTTTACGGTCTATTTGCACTAGGAAGTTTATTACATCAAGATGCGTTGCTTCGTCCTAATTGCACATTCATGTTGAGGATGGAGAAAGTTGTTACTAGTAAAATTATCAATTAGTAGTGGAAGTGTAGAACAAATATTTGTGTTAGTTATCCTTTCAATTAAGCAACTTTTACCTTATTCAGTAGTGATCCAGACTGATATTTCATCAGCCCAAGTTTCCAGATGACATTCGCTGTTTGCATCTCTTGCGATGCCTGCAATAGGCAAGGACTAGGATGGAGATGATCTCCCATCTGAAGAGATATGGTTATTGTTGCTTTGAAATGTGTAGTGGATAAATCAACTTTTTTGTTTGCTACTATCAATCTTACAATTATGTGACCACATTTCCAGAACCATTTAAACCTTCATATTTTGCGCATACTGGCAGGAAAGCCCTTTCAGATCTTCCGATCCACCTGCTTCTCATGCCAATTGGACACTTTGCCCATCTGTATCATTCCTTCCAACAATACTTACAATTTGATTGTGGTGTATCCTGTTTCAGCTTTGATTCTGTGAAAAAAACACCTTCCCCAAGGATGATTATATGTTCATTGCCAAGCATATTTGCTTCGCCAAAAGTTTGTGTTCTCGTGATTTTTTTACTGCCCCAAGCATTTTGGTTCAGTGATAAGGATACAGCGGTGTGTGTGAATTTGGCGCACATACCACTGGTTCGAAGTAAGTGGGAGAAGGGTGGGTCCATATTCCCTCCAGTTTCAAATGCACAGTTAGGGTTTGGCCTAGCTAACTCACAGGCAATCTATCAATCATCAAAAAATAATTTTATTCTTAAACTTTGGCCAGTTCTTTTTAGAAGAATGTGGTAAAGTGTATTAGCCATCATATCCTTGATTCTATTTTGTGATTGAAATTTATATTGATTAACAGAAGGAGAAATTTAAAATCTAGCAACAGAATAATTTTTTACTCTAAGAGGACACTTGCTGTTTATCTTTATTAGTTTTTGGTTTTCAGTTTCCTGACACTTGCTAATTTAGTTTTTATTTTTTTTGTATTGGTTTTCAGTTTTCTTGTAACTAGCTTTCCTATTTGTATTTCCTAGATAGAATAAGAGTCTGCATTCTGCTCTGATTCATACTTTCTTAGTTTTGCAGGTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCAT-AAAGGAGTTTAGGG</genome_strand>
        <mrna_strand>GATTTTATGTCTAACAAGCATCACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAAGGAGTTTAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210828" ref_strand="+" ref_description="SGN-E210828 [cLEC-68-P7]">
      <seq>gagcttcagctgtttccatgagccaagaagccagaacacagaatgactctggttctcaacagaccactgatggagcatccactaggaagaaggtcatggtcattggtggtgatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgattatttgacgaccagcttggtctagattctctaacacccatctcatctattcataaccgcataaggcgttggaaatctctcacaggaaaagatattcaactgtttgttggtgatatatgtgagtttgagttcttggcaaaagccttcaaatcctttgaacctgatgctgtaatccattttggagagcagaggtctgccccttattctatgattgataggtcaagagctatttatacccaacataataatgtgatagggacacttaatgtactatttgccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="76896" stop="75821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76596" g_stop="76121" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E210828" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76596" e_stop="76121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATA</genome_strand>
        <mrna_strand>GAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAAAAGCCTTCAAATCCTTTGAACCTGATGCTGTAATCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201830" ref_strand="+" ref_description="SGN-E201830 [cLEC-11-L10]">
      <seq>gagcttcagctgtttccatgagccaagaagccagaacacagaatgactctggttctcaacagaccactgatggagcatccactaggaagaaggtcatggtcattggtggtgatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgattatttgacgaccagcttggtctagattctctaacacccatctcatctattcataaccgcataaggcgttggaaatctctcacaggaaaagatattcaactgtttgttggtgatatatgtgagtttgagttcttggcagaagccttcaaatcctttgaacctgatgctgtagtccattttggagagcagaggtctgccccttattctatgattgataggtcaagagctatttatacccaacataataatgtgatagggacacttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="76896" stop="75836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76596" g_stop="76136" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E201830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76596" e_stop="76136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAAT</genome_strand>
        <mrna_strand>GAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307993" ref_strand="+" ref_description="SGN-E307993 [cLEY-14-I15]">
      <seq>tttaagaaaattggtaggctcatatcgaggcggctatcatggcacatttactttctactacatgttctttagatgtctcttccagcaaaaagctgcatttcaagtcaattaaccaatgctctactcctaatccaacatgttttaatatgggaatttctttctcacccttgaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagccaagaagccagaacacagaatgactctggttctcaacagaccactgatggagcatccactaggaagaaggtcatggtcattggtggtgatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgattatttgacgaccagcttggtctagattctctaacacccatctcatctattcataaccgcataaggcgttggaaatctctcacaggaaaagatattcaactgtttgttggtgatatatgtgagtttgagttcttggcagaagccttcaaatcctttgaacctgatgctgtagtccattttggagagcagaggtctgccccttattctatgattgataggtcaagagctatttatacccaacataataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="77109" stop="75854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76809" g_stop="76154" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E307993" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76809" e_stop="76154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAAT</genome_strand>
        <mrna_strand>TTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710246" ref_strand="+" ref_description="SGN-E710246 [FA54DB07]">
      <seq>cccccgggctgcaggaattcgcacgaccggttaaagaaaattggtaggctcatatcgaggcggctatcacggcacatttactttctactacatgttctttagatgtctcttccagcaaaaagctgcatttcaagtcaattaaccaatgctctactcctaatccaacatgttttaatatgggaatttctttctcacccttgaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagccaagaagccagaacacagaatgactctggttctcaacagaccactgatggagcatccactaggaagaaggtcatggtcattggtggtgatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgattatttgacgaccagcttggtctagattctctaacacccatctcatctattcataaccgcataatgcgttggaaatctctcacaggaaaagatattcaactgtttgttggtgatatatgtgagtttgagttcttggcagaagccttcaaatcctttgaacctgatgctgtactccattttggagagcagaggtctgccccttattctatgattgataggtcaagagctatttatacccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="77113" stop="75863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76810" g_stop="76163" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="677" r_length="648" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E710246" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76810" e_stop="76163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAA</genome_strand>
        <mrna_strand>GTTAAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCACGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAATGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTACTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477613" ref_strand="+" ref_description="SGN-E477613 [cSTD-1-M11]">
      <seq>cgccaggtttaagaaagtttaggcccactactcaaggcggctatcatggcacatttacctttctactacgtgttctttagatgtctcttccagcaaccaagctgcatttcaagtcaattaaccaatgctctactcctattccaacatcttttaatatgggaatttctttctcacccttgaaaaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagccaagaagccagaacccagaatgactctagttctcaacagaccactgatggagcctccactaggaagaaggtcatggtcattggtggggatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgcctatttgacgaccagcttggtctagattctctaacacccatctcatctatccataaccgcataaggcgttggaaatctctcacaggaaaagaccattcaactgtttgttggtgatattatgtgagttttgagttcttggcagaagccttcaaatcctttgaacctgattctgtagtccattttggagagcagaggtctgccccttattctatgattgataggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="77095" stop="75882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76810" g_stop="76182" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="643" r_length="637" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E477613" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76810" e_stop="76182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAGAAAATTGGTAGGCTCA-TA-TCGAGGCGGCTATCATGGCACATTTA-CTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAA-AAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTG---AAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGA-TATTCAACTGTTTGTTGGTGATA-TATGTGAG-TTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTC</genome_strand>
        <mrna_strand>GTTTAAGAAAGTT--TAGGCCCACTACTCAAGGCGGCTATCATGGCACATTTACCTTTCTACTACGTGTTCTTTAGATGTCTCTTCCAGCAACCAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTATTCCAACATCTTTTAATATGGGAATTTCTTTCTCACCCTTGAAAAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACCCAGAATGACTCTAGTTCTCAACAGACCACTGATGGAGCCTCCACTAGGAAGAAGGTCATGGTCATTGGTGGGGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGCCTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATCCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGACCATTCAACTGTTTGTTGGTGATATTATGTGAGTTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATTCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307997" ref_strand="+" ref_description="SGN-E307997 [cLEY-14-K15]">
      <seq>tttaagaaaattggtaggctcatatcgaggcggctatcatggcacatttactttctactacatgttctttagatgtctcttccagcaaaaagctgcatttcaagtcaattaaccaatgctctactcctaatccaacatgttttaatatgggaatttctttctcacccttgaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagccaagaagccagaacacagaatgactctggttctcaacagaccactgatggagcatccactaggaagaaggtcatggtcattggtggtgatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgattatttgacgaccagcttggtctagattctctaacacccatctcatctattcataaccgcataaggcgttggaaatctctcacaggaaaagatattcaactgtttgttggtgatatatgtgagtttgagttcttggcagaagccttcaaatcctttgaacctgatgctgtagtccattttggagagcagaagtctgccccttattctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="77109" stop="75892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76809" g_stop="76192" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E307997" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76809" e_stop="76192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGA</genome_strand>
        <mrna_strand>TTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAAGTCTGCCCCTTATTCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443299" ref_strand="+" ref_description="SGN-E443299 [cSTA-37-M3]">
      <seq>ctttctcactctattctaaggattttatctctaacaagcatcgccaggtttaagaaagtttaggctcatatcaaggcggctatcatggcacatttactttctactacgtgttctttagatgtctcttccagcaacaagctgcatttcaagtcaattaaccaatgctctactcctattccaacatcttttaatatgggaatttctttctcacccttgaaaaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagccaagaagccagaacccagaatgactctagttctcaacagaccactgatggagcctccactaggaagaaggtcatggtcattggtggggatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgcctatttgacgaccagcttggtctagattctctaacacccatctcatctatccataaccgcataaggcgttggaaatctctcacaggaaaagacattcaactgtttgttggtgatatatgtgagtttgagttcttggcagaagccttcaaatcctttgaacctgattctgtagtccattttggagagcagaggtctgccccttattctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="77095" stop="75894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76810" g_stop="76194" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="665" r_length="618" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E443299" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76810" e_stop="76194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTG---AAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTAT</genome_strand>
        <mrna_strand>GTTTAAGAAAGTT--TAGGCTCATATCAAGGCGGCTATCATGGCACATTTACTTTCTACTACGTGTTCTTTAGATGTCTCTTCCAGCAACAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTATTCCAACATCTTTTAATATGGGAATTTCTTTCTCACCCTTGAAAAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACCCAGAATGACTCTAGTTCTCAACAGACCACTGATGGAGCCTCCACTAGGAAGAAGGTCATGGTCATTGGTGGGGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGCCTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATCCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGACATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATTCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308010" ref_strand="+" ref_description="SGN-E308010 [cLEY-14-A4]">
      <seq>gcaaaaagctgcatttcaagtcaattaaccaatgctctactcctaatccaacatgttttaatatgggaatttctttctcacccttgaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagccaagaagccagaacacagaatgactctggttctcaacagaccactgatggagcatccactaagaagaaggtcatggtcattggtggtgatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgattatttgacgaccagcttggtctagattctctaacacccatctcatctattcataaccgcataaggcgttggaaatctctcacaagaaaagatattcaactgtttgttggtgatatatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="77025" stop="75982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76725" g_stop="76282" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E308010" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76725" e_stop="76282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTG</genome_strand>
        <mrna_strand>GCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAAGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAAGAAAAGATATTCAACTGTTTGTTGGTGATATATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E566593" ref_strand="+" ref_description="SGN-E566593 [5032]">
      <seq>cactctattctaaggatttatctctaacaagcatcgccaggtttacgaaagtttaggctcatatcaaggcggctatcatggcacatttactttctactacgtgttctttagatgtctcttccagcaacaagctgcatttcaagtcaattaaccaatgctctactcctattccaacatcttttaatatgggaatttctttctcacccttgaaaaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagccaagaagccagaacccagaatgactctagttctcaacagaccactgatggagcctccactatgaagaaggtcatggtcattggtggggatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgcctatttgacgaccagcttggtctagattctctaacacccatctcatctatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="77095" stop="76050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76810" g_stop="76350" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="502" r_length="462" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E566593" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76810" e_stop="76350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTG---AAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCA</genome_strand>
        <mrna_strand>GTTTACGAAAGTT--TAGGCTCATATCAAGGCGGCTATCATGGCACATTTACTTTCTACTACGTGTTCTTTAGATGTCTCTTCCAGCAACAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTATTCCAACATCTTTTAATATGGGAATTTCTTTCTCACCCTTGAAAAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACCCAGAATGACTCTAGTTCTCAACAGACCACTGATGGAGCCTCCACTATGAAGAAGGTCATGGTCATTGGTGGGGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGCCTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273908" ref_strand="+" ref_description="SGN-E273908 [cLEN-7-F1]">
      <seq>acaagcatcaccaggtttaagaaaattggtaggctcatatcgaggcggctatcatggcacatttactttctactacatgttctttagatgtctcttccagcaaaaagctgcatttcaagtcaattaaccaatgctctactcctaatccaacatgttttaatatgggaatttctttctcacccttgaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagccaagaagccagaacacagaatgactctggttctcaacagaccactgatggagcatccactaggaagaaggtcatggtcattggtggtgatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgattatttgacgaccagcttggtctagattctctaacacccatctcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="77113" stop="76055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76810" g_stop="76355" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="470" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E273908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76810" e_stop="76355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCT</genome_strand>
        <mrna_strand>GTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330031" ref_strand="+" ref_description="SGN-E330031 [cTOD-5-P22]">
      <seq>tttctcactctctggtaaggatggtatgtctaacaagcatcaccaggtttaagaaaattggtaggctcatatcgaggcggctatcatggcacatttactttctactacatgttctttagatgtctcttccagcaaaaagctgcatttcaagtcaattaaccaatgctctactcctaatccaacatgttttaatatgggaatttctttctcacccttgaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="78771" stop="76274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78471" g_stop="78426" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78425" i_stop="76811" i_length="1615">
            <donor d_prob="0.983" d_score="0.93"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76810" g_stop="76574" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="283" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E330031" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78471" e_stop="78426"/>
          <exon e_start="76810" e_stop="76574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCACTCTCTTGTAAGGATTTTATGTCTAACAAGCATCACCAGGTGACCCTTTTAGCTTCTAGAATTTGCTTTTTAAAAAATTTTAATTACAAAAAATTAATTCTTTACAATCTTAATTCTACTGCTTGGTTCAGTTTTTAATGTTCCTTTTTTTTTGTTGCAATATTTAGTAAAAAGTGTTTGGTTTATGTAGTCAGTTGACTATTTTCTGTTCTAAGTTTGTTCTTTATGGTTTTGACTAAATATTATCAATATGTGTTTTGTTGTTCTGGAGTAGACTAACTGGGGGAGAGAAATTTATGTCTGTATTGAAAATGTCTTAGGTTTTTGAGCATTTCGTAACATGAAATCCATTGTACTGCCATTTTTTGGGCTTTGTTCTAAGTGAAACTATTCCATTGTTACTGACCTTATCCTAATTTCAACTGTTGAAAGAATGTTGTTCAACCATCTCTTTGGAACACTGGTTATGCTATAATGTTGTAAAAACAACTCATGTTTACGGTCTATTTGCACTAGGAAGTTTATTACATCAAGATGCGTTGCTTCGTCCTAATTGCACATTCATGTTGAGGATGGAGAAAGTTGTTACTAGTAAAATTATCAATTAGTAGTGGAAGTGTAGAACAAATATTTGTGTTAGTTATCCTTTCAATTAAGCAACTTTTACCTTATTCAGTAGTGATCCAGACTGATATTTCATCAGCCCAAGTTTCCAGATGACATTCGCTGTTTGCATCTCTTGCGATGCCTGCAATAGGCAAGGACTAGGATGGAGATGATCTCCCATCTGAAGAGATATGGTTATTGTTGCTTTGAAATGTGTAGTGGATAAATCAACTTTTTTGTTTGCTACTATCAATCTTACAATTATGTGACCACATTTCCAGAACCATTTAAACCTTCATATTTTGCGCATACTGGCAGGAAAGCCCTTTCAGATCTTCCGATCCACCTGCTTCTCATGCCAATTGGACACTTTGCCCATCTGTATCATTCCTTCCAACAATACTTACAATTTGATTGTGGTGTATCCTGTTTCAGCTTTGATTCTGTGAAAAAAACACCTTCCCCAAGGATGATTATATGTTCATTGCCAAGCATATTTGCTTCGCCAAAAGTTTGTGTTCTCGTGATTTTTTTACTGCCCCAAGCATTTTGGTTCAGTGATAAGGATACAGCGGTGTGTGTGAATTTGGCGCACATACCACTGGTTCGAAGTAAGTGGGAGAAGGGTGGGTCCATATTCCCTCCAGTTTCAAATGCACAGTTAGGGTTTGGCCTAGCTAACTCACAGGCAATCTATCAATCATCAAAAAATAATTTTATTCTTAAACTTTGGCCAGTTCTTTTTAGAAGAATGTGGTAAAGTGTATTAGCCATCATATCCTTGATTCTATTTTGTGATTGAAATTTATATTGATTAACAGAAGGAGAAATTTAAAATCTAGCAACAGAATAATTTTTTACTCTAAGAGGACACTTGCTGTTTATCTTTATTAGTTTTTGGTTTTCAGTTTCCTGACACTTGCTAATTTAGTTTTTATTTTTTTTGTATTGGTTTTCAGTTTTCTTGTAACTAGCTTTCCTATTTGTATTTCCTAGATAGAATAAGAGTCTGCATTCTGCTCTGATTCATACTTTCTTAGTTTTGCAGGTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGC</genome_strand>
        <mrna_strand>TTTCTCACTCTCTGGTAAGGATGGTATGTCTAACAAGCATCACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308142" ref_strand="+" ref_description="SGN-E308142 [cLEY-14-A14]">
      <seq>tttaagaaaattggtaggctcatatcgaggcggctatcatggcacatttactttctactacatgttctttaaatgtctcttccagcaaaaagctacatttcaagtcaattaaccaatgctctactcctaatccaacatgttttaatatgggaatttctttctcacccttgaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="77109" stop="76296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76809" g_stop="76596" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E308142" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76809" e_stop="76596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAG</genome_strand>
        <mrna_strand>TTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAAATGTCTCTTCCAGCAAAAAGCTACATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289962" ref_strand="+" ref_description="SGN-E289962 [cLET-9-B10]">
      <seq>ttgaaagaaacttatccaataaagcttcaagaattcttatatggattgaaatagtcaaggaagaaaaatggtacaaaagaatgaccctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgccttgacctacagattgataatttgacaaatgaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatatgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="80301" stop="79315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80023" g_stop="79615" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E289962" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80023" e_stop="79615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACAGAAACTTTTTTAATATATAAAGCCTCAATAATCCTTATATGGATTGCAATAGTCAAGAAAG-AAAAGGGTACAAAAGAATGACCCTAATTGTCTTTGTATTTT-ATGAAAATGTCTTGGTAAGACAGAATTTTCTCTTGACCTACAGATTGATAATTTGACAAATGAAATGTTTGTCTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTT--CATAAATGATGATTCAGTTTGATCTCAAACGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACTAGATATTTGTTTTGCAGTAAATTTACT</genome_strand>
        <mrna_strand>TTGAAAGAAAC-TTATCCA-ATA-A-AGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAATGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGCCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391540" ref_strand="+" ref_description="SGN-E391540 [TUS-16-I1]">
      <seq>acgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="80729" stop="79454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80429" g_stop="79751" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E391540" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80429" e_stop="79751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGATCTTGAATTCAAATTTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAATCGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGG-TTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTCGTTTTGATCTGGCAACATATGAAAAACTTGAATACATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGACAGAAACTTTTTTAATATATAAAGCCTCAATAATCCTTATATGGATTGCAATAGTCAAGAAAGAAAAGGGTACAAAAGAATGACCCTAATTGTCTTTGTA-TTTTATGAAAATGTCTTGGTAAGACAGAATTTTCTCTTGACCTACAGATTGATAATTTGACAAATGAAATGTTTGTCTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTCAT</genome_strand>
        <mrna_strand>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAAC-TTTTT--CA-ATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267707" ref_strand="+" ref_description="SGN-E267707 [cLEI-12-K2]">
      <seq>ttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="80680" stop="79497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80380" g_stop="79797" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E267707" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80380" e_stop="79797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAATCGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGG-TTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTCGTTTTGATCTGGCAACATATGAAAAACTTGAATACATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGACAGAAACTTTTTTAATATATAAAGCCTCAATAATCCTTATATGGATTGCAATAGTCAAGAAAGAAAAGGGTACAAAAGAATGACCCTAATTGTCTTTGTA-TTTTATGAAAATGTCTTGGTAAGACAGAATTTTCTCTTGACCTACAGATTGATAATTTGACAAATGAAATGTTTGTCTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGA</genome_strand>
        <mrna_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAAC-TTTTT--CA-ATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205808" ref_strand="+" ref_description="SGN-E205808 [cLEC-20-M21]">
      <seq>cgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="80728" stop="79573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80428" g_stop="79873" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E205808" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80428" e_stop="79873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGATCTTGAATTCAAATTTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAATCGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGG-TTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTCGTTTTGATCTGGCAACATATGAAAAACTTGAATACATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGACAGAAACTTTTTTAATATATAAAGCCTCAATAATCCTTATATGGATTGCAATAGTCAAGAAAGAAAAGGGTACAAAAGAATGACCCTAATTGTCTTTGTA-TTTTATGAAAATGTCTTGGTAAGACAGAATTTTCTCTTGACCTACAG</genome_strand>
        <mrna_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAAC-TTTTT--CA-ATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202657" ref_strand="+" ref_description="SGN-E202657 [cLEC-19-H1]">
      <seq>gatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttaaaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacgggttgcttcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgatttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="80724" stop="79668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80424" g_stop="79968" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E202657" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80424" e_stop="79968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGAATTCAAATTTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAATCGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGG-TTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTCGTTTTGATCTGGCAACATATGAAAAACTTGAATACATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGACAGAAACTTTTTTAATATATAAAGCCTCAATAATCCTTATATGGATTGCAAT</genome_strand>
        <mrna_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAAAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGGTTGCTTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGATTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAAC-TTTTT--CA-ATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273497" ref_strand="+" ref_description="SGN-E273497 [cLEN-3-J16]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaatttatatcattgagcgctacctcatatcaaagataccgtcgacggttatttgatatcgattccaacaagacataacttatcgagatctcttcaatttttttcattatttcaggtacctgaacctttttcaagattttatgaagtgttatgtcaatgtgctcctttatagcacttgcctcattatcatgaccatattgatcatttgctccttccttctttaaggaattttatatttggaatcaattggtctattacgctttcggcgtatcataaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="79736" stop="81010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80036" g_stop="80710" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E273497" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80036" e_stop="80710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTACATGTATTCAAGTTTTTCATATGTTGCCAGATCAAAACGAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGAT-AACCTTTATGCCCCAAGGCACAAATCGTATTTGATATCTTACGATTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTCCACACTATATGACAAATTTGAATTCAAGATCCTCGTCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTTTTC-A-TTTTTT-ATTATTTTAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCGCTTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTTCTTCTTTAAGAAATTTTATATTTGGAATCAATTGGTCTATTATGCTTTTGGCGTATCATAGACTCTG</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCAATTTTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTTAAGGAATTTTATATTTGGAATCAATTGGTCTATTACGCTTTCGGCGTATCATAAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273387" ref_strand="+" ref_description="SGN-E273387 [cLEN-3-J20]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="79736" stop="80737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80036" g_stop="80437" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E273387" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.036" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80036" e_stop="80437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTACATGTATTCAAGTTTTTCATATGTTGCCAGATCAAAACGAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGAT-AACCTTTATGCCCCAAGGCACAAATCGTATTTGATATCTTACGATTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTCCACACTATATGACAAATTTGAATTCAAGATCCTCGTCACAATTT</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204533" ref_strand="-" ref_description="SGN-E204533 [cLEC-24-G13]">
      <seq>aatttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggttttgaaaaaaaaaaaaaaaaaactcggactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="82822" stop="81849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82522" g_stop="82169" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="379"/>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E204533" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204533" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82522" e_stop="82169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTCATTATCAAAATGGTATGAAAGGACATTGGACTTGTGAATGTTGTCGACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAGGATAAACTGATGGTACAATTAATCTTTCAAAGTGATGTTGAGGTGTGTCATAGAAATATGATGAATTTTAAAGCCATGACAATGTGCTTATAATGCAAATTTATGAAATACAAAGAAATAATTAGTCCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATGGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATATGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATTGAAG</genome_strand>
        <mrna_strand>AATTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323767" ref_strand="+" ref_description="SGN-E323767 [cTOC-5-N11]">
      <seq>ttcacttcatcactcacactccattgattcacattcactcactgaaatacactctcccatagaaaatatcttcaattttcattaaacaagttcaagatttttgcctacgattctttgctacacagacaaggtaagagggttttggtaagtcttttgaacagctaaccatatatatatagccttataactgaaaaggggtatgtattaattttcaaaaaaaaaatatatgttgtggcgcctccttgcatatgccaacaatgtctagagttgcagaaaagtaaaagggtttgtcagaacagaatttcaattaaagattacatctttttacaagttgtgatcttacaattcttgtttttttttttcttttttgagaagaatttagggaagggtctttttcagatctctttttctagcatttttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="112092" stop="113115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112392" g_stop="112815" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E323767" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112392" e_stop="112815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTCATCACTCACACTCCATTGATTCACATTCACTCACTGAAATACACTCTCCCATAGAAAATATCTTCAATTTTCATTAAACAAGTTCAAGATTTTTGCCTACGATTCTTTGCTACACAGACAAGGTAAGAGGGTTTTGGTAAGTCTTTTGAACAGCTAACCATATATATATAGCCTTATAACTGAAAAGGGGTATGTATTAATTTTCAAAAAAAAAATATATGTTGTGGCGCCTCCTTGCATATGCCAACAATGTCTAGAGTTGCAGAAAAGTAAAAGGGTTTGTCAGAACAGAATTTCAATTAAAGATTACATCTTTTTACAAGTTGTGATCTTACAATTCTTGTTTTTTTTTTTCTTTTTTGAGAAGAATTTAGGGAAGGGTCTTTTTCAGATCTCTTTTTCTAGCATTTTTCTTA</genome_strand>
        <mrna_strand>TTCACTTCATCACTCACACTCCATTGATTCACATTCACTCACTGAAATACACTCTCCCATAGAAAATATCTTCAATTTTCATTAAACAAGTTCAAGATTTTTGCCTACGATTCTTTGCTACACAGACAAGGTAAGAGGGTTTTGGTAAGTCTTTTGAACAGCTAACCATATATATATAGCCTTATAACTGAAAAGGGGTATGTATTAATTTTCAAAAAAAAAATATATGTTGTGGCGCCTCCTTGCATATGCCAACAATGTCTAGAGTTGCAGAAAAGTAAAAGGGTTTGTCAGAACAGAATTTCAATTAAAGATTACATCTTTTTACAAGTTGTGATCTTACAATTCTTGTTTTTTTTTTTCTTTTTTGAGAAGAATTTAGGGAAGGGTCTTTTTCAGATCTCTTTTTCTAGCATTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355544" ref_strand="+" ref_description="SGN-E355544 [cLHT-19-E18]">
      <seq>ttcatcactcacactccattgatttacattcactcactgaaatacactctcccatagaaaatatcttcaattttcattaaacaagttcaagaattttgcctacgattcgttgctacacagacaaggtaagagggtttaggtaagtcttttgaacaggtcaccatatatatatatatatatagccttataactgaaaaggggtatctgtaaattttcaaaaaaaaaaaaattattttgtggcgcctccttgcatatgccaacaatgtctagagttgcagaaaagtaaagggttagtcagaacagaatttcaattaaagattacgtctttttacaagttgtgatcttacaattcttggtttttttttcttttttgagaagaatttaggaaagggtctttttcagatctcttttcctagcatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="112097" stop="113111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112397" g_stop="112811" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E355544" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112397" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCACTCACACTCCATTGATTCACATTCACTCACTGAAATACACTCTCCCATAGAAAATATCTTCAATTTTCATTAAACAAGTTCAAGATTTTTGCCTACGATTCTTTGCTACACAGACAAGGTAAGAGGGTTTTGGTAAGTCTTTTGAACA-G----C-TA-A-CCATATATATATAGCCTTATAACTGAAAAGGGGTATGTATTAATTTTC-AAAAAAAAAATA-TATGTTGTGGCGCCTCCTTGCATATGCCAACAATGTCTAGAGTTGCAGAAAAGTAAAAGGGTTTGTCAGAACAGAATTTCAATTAAAGATTACATCTTTTTACAAGTTGTGATCTTACAATTCTTGTTTTTTTTTTTCTTTTTTGAGAAGAATTTAGGGAAGGGTCTTTTTCAGATCTCTTTTTCTAGCATTTTT</genome_strand>
        <mrna_strand>TTCATCACTCACACTCCATTGATTTACATTCACTCACTGAAATACACTCTCCCATAGAAAATATCTTCAATTTTCATTAAACAAGTTCAAGAATTTTGCCTACGATTCGTTGCTACACAGACAAGGTAAGAGGGTTTAGGTAAGTCTTTTGAACAGGTCACCATATATATATATATATATAGCCTTATAACTGAAAAGGGGTATCTGTAAATTTTCAAAAAAAAAAAAATTATTTTGTGGCGCCTCCTTGCATATGCCAACAATGTCTAGAGTTGCAGAAAAGT-AAAGGGTTAGTCAGAACAGAATTTCAATTAAAGATTACGTCTTTTTACAAGTTGTGATCTTACAATTCTTG-GTTTTTTTTTCTTTTTTGAGAAGAATTTAGGAAAGGGTCTTTTTCAGATCTCTTTTCCTAGCATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467253" ref_strand="+" ref_description="SGN-E467253 [cSTB-44-C13]">
      <seq>cgattccttgctaagcgggtttgaatttaggaaaaggtctttttcagatctcttttctagcatcttttcttatggcagattcaagaaagtacattactagtgaggaactgaagaatcacaacaaaccaggggatctgtggatatccattcagggtaaggtgtatgatgtatcaaattgggtgaaggaacatcctggtggtgatttcccactgttgaatcttgctggacaggatgttactgatgcatttgttgcattccatcctgctactgcttggcagtatcttgacaagttctttaaggggttttacctcaacgattattctgcatctgagagtgggtggattggtcatgattcacgacattatcaggtgatgagcactcgcgggttcaacagatttgctcaagttcttactgggaattgccttgctcgaatcagcattgcttggtggaagtggaaccacaatgctcaccacattgcctgccacagtcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="112466" stop="113732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112767" g_stop="113075" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="332" r_length="309" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113076" i_stop="113270" i_length="195">
            <donor d_prob="0.078" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113271" g_stop="113432" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="494" r_length="162" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E467253" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112767" e_stop="113075"/>
          <exon e_start="113271" e_stop="113432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAGGGAAGGGTCTTTTTCAGATCTCTTTTTCTAGCAT-TTTTCTTATGGCAGATTCAAGAAAGTACATTTCTAGTGAGGAACTGAAGAATCACAACAAACCAGGGGATCTGTGGATATCCATTCAGGGTAAGGTGTATGATGTATCAGATTGGGTGAAGGAACATCCTGGTGGTGATTTCCCACTGTTAAATCTTGCTGGACAGGATGTTACTGATGCATTTGTTGCATTTCATCCTGCTACTGCTTGGAAGTATCTTGACAAGTTCTTTAAGGGGTTTTACCTCAAGGATTATTCTGTTTCTGAGGTATCTACGGATTATAGAAGGCTTGTGTCTGAGTTCACTAAAATGGGGTTGTTTGAAAAGAAAGGCCATGTTTGTTTATTCACCATGTTCTTAATGACAATGTTGTTTTCCTTAAGTGTTTATGGAATCTTGTATTGTCATGGTGTGTTGGCACATTTGATAAGTGGTGCCTTGATGGGGTGTCTTTGGATTCAGAGTGGGTGGATTGGTCATGATTCAGGGCATTATCAGGTGATGAGCACTCGCGGATTCAACAGATTTGCTCAAGTCCTTACTGGGAATTGCCTTGCTGGAATCAGCATTGCTTGGTGGAAGTGGAACCACAATGCTCACCACATTGCCTGCAACAGTCTTGAA</genome_strand>
        <mrna_strand>AATTTAGGAAAAGGTCTTTTTCAGATCTC-TTTTCTAGCATCTTTTCTTATGGCAGATTCAAGAAAGTACATTACTAGTGAGGAACTGAAGAATCACAACAAACCAGGGGATCTGTGGATATCCATTCAGGGTAAGGTGTATGATGTATCAAATTGGGTGAAGGAACATCCTGGTGGTGATTTCCCACTGTTGAATCTTGCTGGACAGGATGTTACTGATGCATTTGTTGCATTCCATCCTGCTACTGCTTGGCAGTATCTTGACAAGTTCTTTAAGGGGTTTTACCTCAACGATTATTCTGCATCTGAG...................................................................................................................................................................................................AGTGGGTGGATTGGTCATGATTCACGACATTATCAGGTGATGAGCACTCGCGGGTTCAACAGATTTGCTCAAGTTCTTACTGGGAATTGCCTTGCTCGAATCAGCATTGCTTGGTGGAAGTGGAACCACAATGCTCACCACATTGCCTGCCACAGTCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558120" ref_strand="+" ref_description="SGN-E558120 [17027]">
      <seq>gtggatccccgggctgcaggctaaaatggggttgtttgaaaagaaaggccatgtttgtttattcaccatgtgcttaatggcaatgttgttttccctaagtgtttatggaatcttgtgttgtcaaagtgtgttggcacatttgataagtggtggcttgatggggtgtctttggatacagagtgggtggattggtcatgattcagggcattatcaggtgatgagcactcgtgggttcaacagatttgctcaagttcttactgggaatttccttggctggaatcagcattgcttggtggaagtggaaccacaatgctcaccacattgcctgcaacagtcttgaatatgaccctgatcttcagcacatgccattctttgcggtatcttccaagttttttgactcactcacttcttatttttacgataggaagatgaattttgattcttttactagattcttggttagtcatcaacattggacattttatcctgttatgtgttttgctagaatcaatttgtttgctcagtcattcatattgttgttatccaacaaaaatgtgccccatcgagttcaggagcttttgggggtggtttctttctggatttggtatccgttgcttgtttcttgcttgccaaactggggcgaaagaattatgtttcgttctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="112813" stop="114056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113114" g_stop="113756" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="666" r_length="645" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E558120" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113114" e_stop="113756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGGGTTGTTTGAAAAGAAAGGCCATGTTTGTTTATTCACCATGTTCTTAATGACAATGTTGTTTTCCTTAAGTGTTTATGGAATCTTGTATTGTCATGGTGTGTTGGCACATTTGATAAGTGGTGCCTTGATGGGGTGTCTTTGGATTCAGAGTGGGTGGATTGGTCATGATTCAGGGCATTATCAGGTGATGAGCACTCGCGGATTCAACAGATTTGCTCAAGTCCTTACTGGGAATTGCCTT-GCTGGAATCAGCATTGCTTGGTGGAAGTGGAACCACAATGCTCACCACATTGCCTGCAACAGTCTTGAATATGACCCTGATCTTCAACACATGCCATTCTTTGTGGTATCTTCCAAGTTTTTCGACTCACTCACTTCTTATTTTTACGATAGGAAGATGAATTTTGATTCTTTTACTAGATTCTTGGTTAGTCATCAACATTGGACATTTTATCCTGTTATGTGTTTTGCTAGAATCAATTTGTTTGCTCAGTCATTCATATTGTTGTTATCCAACAAAAATGTGCCCCATCGAGTTCAGGAGCTTTTGGGGGTGGTTTCTTTCTGGATTTGGTATCCGTTGCTTGTTTCTTTCTTGCCAAACTGGGGCGAAAGAATTATATTT-GTTCTTGCT</genome_strand>
        <mrna_strand>TAAAATGGGGTTGTTTGAAAAGAAAGGCCATGTTTGTTTATTCACCATGTGCTTAATGGCAATGTTGTTTTCCCTAAGTGTTTATGGAATCTTGTGTTGTCAAAGTGTGTTGGCACATTTGATAAGTGGTGGCTTGATGGGGTGTCTTTGGATACAGAGTGGGTGGATTGGTCATGATTCAGGGCATTATCAGGTGATGAGCACTCGTGGGTTCAACAGATTTGCTCAAGTTCTTACTGGGAATTTCCTTGGCTGGAATCAGCATTGCTTGGTGGAAGTGGAACCACAATGCTCACCACATTGCCTGCAACAGTCTTGAATATGACCCTGATCTTCAGCACATGCCATTCTTTGCGGTATCTTCCAAGTTTTTTGACTCACTCACTTCTTATTTTTACGATAGGAAGATGAATTTTGATTCTTTTACTAGATTCTTGGTTAGTCATCAACATTGGACATTTTATCCTGTTATGTGTTTTGCTAGAATCAATTTGTTTGCTCAGTCATTCATATTGTTGTTATCCAACAAAAATGTGCCCCATCGAGTTCAGGAGCTTTTGGGGGTGGTTTCTTTCTGGATTTGGTATCCGTTGCTTGTTTCTTGCTTGCCAAACTGGGGCGAAAGAATTATGTTTCGTTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432414" ref_strand="+" ref_description="SGN-E432414 [STM-57-C9]">
      <seq>gagtcattcatattgttgttatccaacaaaaatgtgccccatcgagttcaggagcttttgggggtggtttctttctggatttggtatccgttgcttgtttcttgcttgccaaactggggcgaaagaattatgtttgttctttctagtttcacagtgactggaattcagcatgttcaattctgtttgaaccatttctcgtctgaaatttatgttgcaccacctaaaggaaatgattggtttgagaagcaaactaatggctctctcgacatatcatgccctagttggatggattggtttcatggtggattgcagtttcagattgagcatcatttgtttcctagattaccaagatgccaactgaggaaagtctctccctttgtgaaagacctctgtaaaaagcatggtttaccttacagttgtgtctccttctggaagtctaatgttttgaccatcagcaccctcagagctgcagctttgcaggctcgggatttaactaagcctgttccaaagaatctggtttgggaagccatcaacactcacggttgagactgaggagctncaggaaatccctgngatcatttcctcatgatcgatggattggagaaaagtgcttctgtttgtattatttattcctagtatttgatcattctagnncactatatcttcatctccattttactgggaatgcatatcattgtaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="113314" stop="114565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113613" g_stop="114317" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E432414" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113613" e_stop="114317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCATTCATATTGTTGTTATCCAACAAAAATGTGCCCCATCGAGTTCAGGAGCTTTTGGGGGTGGTTTCTTTCTGGATTTGGTATCCGTTGCTTGTTTCTTTCTTGCCAAACTGGGGCGAAAGAATTATATTTGTTCTTGCTAGTTTCACAGTGACTGGAATTCAGCATGTTCAATTCTGTTTAAACCATTTCTCATCTGAAATTTATGTTGCACCACCTAAAGGAAATGATTGGTTTGAGAAGCAAACTAATGGCTCTCTCGACATATCATGCCCTAGTTGGATGGATTGGTTTCATGGTGGATTGCAGTTTCAGATTGAGCATCATTTGTTTCCTAGATTACCAAGATGCCAACTGAGGAAAGTCTCTCCCTTTGTGAAAGACCTCTGTAAAAAGCATGGTTTGCCTTACAGTTGTGTCTCCTTCTGGAAGTCTAATGTTTTGACCATCAGCACCCTCAGAGCTGCAGCTTTGCAGGCTCGGGATTTAACTAAGCCTGTTCCAAAAAATCTAGTTTGGGAAGCCGTCAACACTCACGGTTGAGACTGAGGAGCTCAAGGAAATCCATGGTATATCATTTCCTCATGATCGATGGATTGGAGAAAAGTGCTGCTATATGTATTATTTATTTCTAGTA-TTGATCAATTGTAACAACAATAATCTGCATCTCCGTTTTACTGGGAATGAATATCTTTGTAATAT</genome_strand>
        <mrna_strand>GAGTCATTCATATTGTTGTTATCCAACAAAAATGTGCCCCATCGAGTTCAGGAGCTTTTGGGGGTGGTTTCTTTCTGGATTTGGTATCCGTTGCTTGTTTCTTGCTTGCCAAACTGGGGCGAAAGAATTATGTTTGTTCTTTCTAGTTTCACAGTGACTGGAATTCAGCATGTTCAATTCTGTTTGAACCATTTCTCGTCTGAAATTTATGTTGCACCACCTAAAGGAAATGATTGGTTTGAGAAGCAAACTAATGGCTCTCTCGACATATCATGCCCTAGTTGGATGGATTGGTTTCATGGTGGATTGCAGTTTCAGATTGAGCATCATTTGTTTCCTAGATTACCAAGATGCCAACTGAGGAAAGTCTCTCCCTTTGTGAAAGACCTCTGTAAAAAGCATGGTTTACCTTACAGTTGTGTCTCCTTCTGGAAGTCTAATGTTTTGACCATCAGCACCCTCAGAGCTGCAGCTTTGCAGGCTCGGGATTTAACTAAGCCTGTTCCAAAGAATCTGGTTTGGGAAGCCATCAACACTCACGGTTGAGACTGAGGAGCTNCAGGAAATCCCT-G-NGATCATTTCCTCATGATCGATGGATTGGAGAAAAGTGCTTCTGTTTGTATTATTTATTCCTAGTATTTGATCATTCTAGNNCACTAT-ATCTTCATCTCCATTTTACTGGGAATGCATATCATTGTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401373" ref_strand="+" ref_description="SGN-E401373 [PPC-3-P14]">
      <seq>gagtcattcatattgttgttatccaacaaaaatgtgccccatcgagttcaggagcttttgggggtggtttctttctggatttggtatccgttgcttgtttcttgcttgccaaactggggcgaaagaattatgtttgttctttctagtttcacagtgactggaattcagcatgttcaattctgtttgaaccatttctcgtctgaaatttatgttgcaccacctaaaggaaatgattggtttgagaagcaaactaatggctctctcgacatatcatgccctagttggatggattggtttcatggtggattgcagtttcagattgagcatcatttgtttcctagattaccaagatgccaactgaggaaagtctctccctttgtgaaagacctctgtaaaaagcatggtttaccttacagttgtgtctccttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="113314" stop="114344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113613" g_stop="114044" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E401373" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113613" e_stop="114044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCATTCATATTGTTGTTATCCAACAAAAATGTGCCCCATCGAGTTCAGGAGCTTTTGGGGGTGGTTTCTTTCTGGATTTGGTATCCGTTGCTTGTTTCTTTCTTGCCAAACTGGGGCGAAAGAATTATATTTGTTCTTGCTAGTTTCACAGTGACTGGAATTCAGCATGTTCAATTCTGTTTAAACCATTTCTCATCTGAAATTTATGTTGCACCACCTAAAGGAAATGATTGGTTTGAGAAGCAAACTAATGGCTCTCTCGACATATCATGCCCTAGTTGGATGGATTGGTTTCATGGTGGATTGCAGTTTCAGATTGAGCATCATTTGTTTCCTAGATTACCAAGATGCCAACTGAGGAAAGTCTCTCCCTTTGTGAAAGACCTCTGTAAAAAGCATGGTTTGCCTTACAGTTGTGTCTCCTTCTGG</genome_strand>
        <mrna_strand>GAGTCATTCATATTGTTGTTATCCAACAAAAATGTGCCCCATCGAGTTCAGGAGCTTTTGGGGGTGGTTTCTTTCTGGATTTGGTATCCGTTGCTTGTTTCTTGCTTGCCAAACTGGGGCGAAAGAATTATGTTTGTTCTTTCTAGTTTCACAGTGACTGGAATTCAGCATGTTCAATTCTGTTTGAACCATTTCTCGTCTGAAATTTATGTTGCACCACCTAAAGGAAATGATTGGTTTGAGAAGCAAACTAATGGCTCTCTCGACATATCATGCCCTAGTTGGATGGATTGGTTTCATGGTGGATTGCAGTTTCAGATTGAGCATCATTTGTTTCCTAGATTACCAAGATGCCAACTGAGGAAAGTCTCTCCCTTTGTGAAAGACCTCTGTAAAAAGCATGGTTTACCTTACAGTTGTGTCTCCTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432415" ref_strand="+" ref_description="SGN-E432415 [STM-57-C9]">
      <seq>ctttttttttgcagtaacctgcaaagctactactttggtgatattatacattaaatcgaaccaaggagggaaaatatgaattttcctgttgttatctagatcaaatacaaataattaagccttaatagaatgacataatacgattgttctctttagatattacaatgatatgcattcccagtaaaatggagatgaagattatagttgctagaattgatcaatactaggaataaataatacaaacagaagcacttttctccaatccatcgatcatgaggaaatgatcccagggatttccttgagctcctcagtctcaaccgtgagtgttgatggcttcccaaaccagattctttggaacaggcttagttaaatcccgagcctgcaaagctgcagctctgagggtgctgatggtcaaaacattagacttccagaaggagacacaactgtaaggtaaaccatgctttttacagaggtctttcacaaagggagagactttcctcagttggcatcttggtaatctaggaaacaaatgatgctcaatctgaaactgcaatccaccatgaaaccaatccatccaactagggcatgatatgtcgagagagccattagtttgcttctcaaaccaatcatttcctttaggtggtgcaacataaatttcagacgagaaatggttcaaacagaattgaacatgctgaattccagtcactgtgaaactagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="114768" stop="113451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114474" g_stop="113751" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-E432415" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114474" e_stop="113751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTTCTGCAGTAACCTGCAAAGCTACTAGTTTGGTGATATTATACATTAAATCGAACCTGGGAGGGACAATATGAACTTTTTTGTCGTTATCTAAGATCAAATACAAGTAAGTAAGCCTTAATAGAATGACACAATACGATTGTTCTCTTTAGATATTACAAAGATATTCATTCCCAGTAAAACGGAGATGCAGATTATTGTTGTTACAATTGATCAATACTAGAAATAAATAATACATATAGCAGCACTTTTCTCCAATCCATCGATCATGAGGAAATGATATACCATGGATTTCCTTGAGCTCCTCAGTCTCAACCGTGAGTGTTGACGGCTTCCCAAACTAGATTTTTTGGAACAGGCTTAGTTAAATCCCGAGCCTGCAAAGCTGCAGCTCTGAGGGTGCTGATGGTCAAAACATTAGACTTCCAGAAGGAGACACAACTGTAAGGCAAACCATGCTTTTTACAGAGGTCTTTCACAAAGGGAGAGACTTTCCTCAGTTGGCATCTTGGTAATCTAGGAAACAAATGATGCTCAATCTGAAACTGCAATCCACCATGAAACCAATCCATCCAACTAGGGCATGATATGTCGAGAGAGCCATTAGTTTGCTTCTCAAACCAATCATTTCCTTTAGGTGGTGCAACATAAATTTCAGATGAGAAATGGTTTAAACAGAATTGAACATGCTGAATTCCAGTCACTGTGAAACTAGCAAG</genome_strand>
        <mrna_strand>CTTTTTTTTTGCAGTAACCTGCAAAGCTACTACTTTGGTGATATTATACATTAAATCGAACCAAGGAGGGAAAATATGAATTTTCCTGTTGTTATCT-AGATCAAATACAAATAATTAAGCCTTAATAGAATGACATAATACGATTGTTCTCTTTAGATATTACAATGATATGCATTCCCAGTAAAATGGAGATGAAGATTATAGTTGCTAGAATTGATCAATACTAGGAATAAATAATACAAACAGAAGCACTTTTCTCCAATCCATCGATCATGAGGAAATG--ATCCCAGGGATTTCCTTGAGCTCCTCAGTCTCAACCGTGAGTGTTGATGGCTTCCCAAACCAGATTCTTTGGAACAGGCTTAGTTAAATCCCGAGCCTGCAAAGCTGCAGCTCTGAGGGTGCTGATGGTCAAAACATTAGACTTCCAGAAGGAGACACAACTGTAAGGTAAACCATGCTTTTTACAGAGGTCTTTCACAAAGGGAGAGACTTTCCTCAGTTGGCATCTTGGTAATCTAGGAAACAAATGATGCTCAATCTGAAACTGCAATCCACCATGAAACCAATCCATCCAACTAGGGCATGATATGTCGAGAGAGCCATTAGTTTGCTTCTCAAACCAATCATTTCCTTTAGGTGGTGCAACATAAATTTCAGACGAGAAATGGTTCAAACAGAATTGAACATGCTGAATTCCAGTCACTGTGAAACTAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726828" ref_strand="+" ref_description="SGN-E726828 [LA12DG04]">
      <seq>gtttcagattgagcatcatttgtttcctagattaccaagatgccaactgaggaaagtctctccctttgtgaaagacctctgtaaaaagcatggtttgccttacagttgtgtctccttctggaagtctaatgttttgaccatcagcaccctcagagctgcagctttgcaggctcgggatttaactaagcctgttccaaaaaatctagtttgggaagccgtcaacactcacggttgagactgaggagctcaaggaaatccatggtatatcatttcctcatgatcgatggattggagaaaagtgctgctatatgtattatttatttctagtattgatcaattgtaacaacaataatctgcatctccgttttactgggaatgaatatctttgtaatatctaaagagaacaatcgtattgtgtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="113624" stop="114643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113924" g_stop="114342" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="451"/>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E726828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113924" e_stop="114342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAGATTGAGCATCATTTGTTTCCTAGATTACCAAGATGCCAACTGAGGAAAGTCTCTCCCTTTGTGAAAGACCTCTGTAAAAAGCATGGTTTGCCTTACAGTTGTGTCTCCTTCTGGAAGTCTAATGTTTTGACCATCAGCACCCTCAGAGCTGCAGCTTTGCAGGCTCGGGATTTAACTAAGCCTGTTCCAAAAAATCTAGTTTGGGAAGCCGTCAACACTCACGGTTGAGACTGAGGAGCTCAAGGAAATCCATGGTATATCATTTCCTCATGATCGATGGATTGGAGAAAAGTGCTGCTATATGTATTATTTATTTCTAGTATTGATCAATTGTAACAACAATAATCTGCATCTCCGTTTTACTGGGAATGAATATCTTTGTAATATCTAAAGAGAACAATCGTATTGTGTC</genome_strand>
        <mrna_strand>GTTTCAGATTGAGCATCATTTGTTTCCTAGATTACCAAGATGCCAACTGAGGAAAGTCTCTCCCTTTGTGAAAGACCTCTGTAAAAAGCATGGTTTGCCTTACAGTTGTGTCTCCTTCTGGAAGTCTAATGTTTTGACCATCAGCACCCTCAGAGCTGCAGCTTTGCAGGCTCGGGATTTAACTAAGCCTGTTCCAAAAAATCTAGTTTGGGAAGCCGTCAACACTCACGGTTGAGACTGAGGAGCTCAAGGAAATCCATGGTATATCATTTCCTCATGATCGATGGATTGGAGAAAAGTGCTGCTATATGTATTATTTATTTCTAGTATTGATCAATTGTAACAACAATAATCTGCATCTCCGTTTTACTGGGAATGAATATCTTTGTAATATCTAAAGAGAACAATCGTATTGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726860" ref_strand="+" ref_description="SGN-E726860 [LA13AB09]">
      <seq>gtttcagattgagcatcatttgtttcctagattaccaagatgccaactgaggaaagtctctccctttgtgaaagacctctgtaaaaagcatggtttgccttacagttgtgtctccttctggaagtctaatgttttgaccatcagcaccctcagagctgcagctttgcaggctcgggatttaactaagcctgttccaaaaaatctagtttgggaagccgtcaacactcacggttgagactgaggagctcaaggaaatccatggtatatcatttcctcatgatcgatggattggagaaaagtgctgctatatgtattatttatttctagtattgatcaattgtaacaacaataatctgcatctccgttttactgggaatgaatatctttgtaatatctaaagagaacaatcgtattgtgtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="113624" stop="114643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113924" g_stop="114342" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="451"/>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E726860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113924" e_stop="114342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAGATTGAGCATCATTTGTTTCCTAGATTACCAAGATGCCAACTGAGGAAAGTCTCTCCCTTTGTGAAAGACCTCTGTAAAAAGCATGGTTTGCCTTACAGTTGTGTCTCCTTCTGGAAGTCTAATGTTTTGACCATCAGCACCCTCAGAGCTGCAGCTTTGCAGGCTCGGGATTTAACTAAGCCTGTTCCAAAAAATCTAGTTTGGGAAGCCGTCAACACTCACGGTTGAGACTGAGGAGCTCAAGGAAATCCATGGTATATCATTTCCTCATGATCGATGGATTGGAGAAAAGTGCTGCTATATGTATTATTTATTTCTAGTATTGATCAATTGTAACAACAATAATCTGCATCTCCGTTTTACTGGGAATGAATATCTTTGTAATATCTAAAGAGAACAATCGTATTGTGTC</genome_strand>
        <mrna_strand>GTTTCAGATTGAGCATCATTTGTTTCCTAGATTACCAAGATGCCAACTGAGGAAAGTCTCTCCCTTTGTGAAAGACCTCTGTAAAAAGCATGGTTTGCCTTACAGTTGTGTCTCCTTCTGGAAGTCTAATGTTTTGACCATCAGCACCCTCAGAGCTGCAGCTTTGCAGGCTCGGGATTTAACTAAGCCTGTTCCAAAAAATCTAGTTTGGGAAGCCGTCAACACTCACGGTTGAGACTGAGGAGCTCAAGGAAATCCATGGTATATCATTTCCTCATGATCGATGGATTGGAGAAAAGTGCTGCTATATGTATTATTTATTTCTAGTATTGATCAATTGTAACAACAATAATCTGCATCTCCGTTTTACTGGGAATGAATATCTTTGTAATATCTAAAGAGAACAATCGTATTGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732011" ref_strand="+" ref_description="SGN-E732011 [LB01AB09]">
      <seq>gtttcagattgagcatcatttgtttcctagattaccaagatgccaactgaggaaagtctctccctttgtgaaagacctctgtaaaaagcatggtttgccttacagttgtgtctccttctggaagtctaatgttttgaccatcagcaccctcagagctgcagctttgcaggctcgggatttaactaagcctgttccaaaaaatctagtttgggaagccgtcaacactcacggttgagactgaggagctcaaggaaatccatggtatatcatttcctcatgatcgatggattggagaaaagtgctgctatatgtattatttatttctagtattgatcaattgtaacaacaataatctgcatctccgttttactgggaatgaatatctttgtaatatctaaagagaacaatcgtattgtgtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="113624" stop="114643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113924" g_stop="114342" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="451"/>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E732011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113924" e_stop="114342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAGATTGAGCATCATTTGTTTCCTAGATTACCAAGATGCCAACTGAGGAAAGTCTCTCCCTTTGTGAAAGACCTCTGTAAAAAGCATGGTTTGCCTTACAGTTGTGTCTCCTTCTGGAAGTCTAATGTTTTGACCATCAGCACCCTCAGAGCTGCAGCTTTGCAGGCTCGGGATTTAACTAAGCCTGTTCCAAAAAATCTAGTTTGGGAAGCCGTCAACACTCACGGTTGAGACTGAGGAGCTCAAGGAAATCCATGGTATATCATTTCCTCATGATCGATGGATTGGAGAAAAGTGCTGCTATATGTATTATTTATTTCTAGTATTGATCAATTGTAACAACAATAATCTGCATCTCCGTTTTACTGGGAATGAATATCTTTGTAATATCTAAAGAGAACAATCGTATTGTGTC</genome_strand>
        <mrna_strand>GTTTCAGATTGAGCATCATTTGTTTCCTAGATTACCAAGATGCCAACTGAGGAAAGTCTCTCCCTTTGTGAAAGACCTCTGTAAAAAGCATGGTTTGCCTTACAGTTGTGTCTCCTTCTGGAAGTCTAATGTTTTGACCATCAGCACCCTCAGAGCTGCAGCTTTGCAGGCTCGGGATTTAACTAAGCCTGTTCCAAAAAATCTAGTTTGGGAAGCCGTCAACACTCACGGTTGAGACTGAGGAGCTCAAGGAAATCCATGGTATATCATTTCCTCATGATCGATGGATTGGAGAAAAGTGCTGCTATATGTATTATTTATTTCTAGTATTGATCAATTGTAACAACAATAATCTGCATCTCCGTTTTACTGGGAATGAATATCTTTGTAATATCTAAAGAGAACAATCGTATTGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="132371" stop="133511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132671" g_stop="133211" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132671" e_stop="133211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTCATATGATGGAGAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAATCTATCAAAAATCACCCAAATAGAGTCATACTTACTCATCGTCTTTGGA-GACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTATTCATACTTTACTTGCTGACAATTCGGGAATTGAGCAACAAAATCAACAATGTCACGCTTAATCATACTCCACCAAAAATATTGCTTTAGATCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGGGCCTCCGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATAC-CCTTCCCTTAATTCTCAAAACACCTTTCTCATCAATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="132815" stop="133977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133115" g_stop="133702" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133115" e_stop="133702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTTCTCATCAATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCGGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTGATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAGGTCATTAGCCAAAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGGAACCTGCAAGTGGGCTAGGCTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGCCTTTCCCGGATGATACAAGATAGTGATAATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACTGCTTCTAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACTTTTAATTGA</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGAT-ATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="132815" stop="133977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133115" g_stop="133702" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133115" e_stop="133702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTTCTCATCAATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCGGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTGATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAGGTCATTAGCCAAAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGGAACCTGCAAGTGGGCTAGGCTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGCCTTTCCCGGATGATACAAGATAGTGATAATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACTGCTTCTAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACTTTTAATTGA</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGAT-ATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 [cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="132815" stop="133969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133115" g_stop="133669" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133115" e_stop="133669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTTCTCATCAATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCGGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTGATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAGGTCATTAGCCAAAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGGAACCTGCAAGTGGGCTAGGCTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGCCTTTCCCGGATGATACAAGATAGTGATAATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACTGCTTCTAACTCCAAATCGTGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGAT-ATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>96</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="857" PGL_stop="1662"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="857" e_stop="1662"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="857" e_stop="1662" e_length="806"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="857" stop="1662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745036" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATAAAAATGCGGAGCTATGTCGATCGGAAGACAGAAAAATTCCAGAGCTACAAGGAGACGTTGGGAAACTCCATAAAACCCATGACAATGTTTGTTTAAATGCAGCTACAGCCAGCACATCTACAACAAAAGGAGTCAGTGGAATAAGATATACAAATTTAAATATGAACAAAATCTTTGATAAACCATTTATTCCAAAGAACCAAAAAGACTCATTATTTATACCACCACAAATAACTACTTACTCAGAAAGTTTAAGCCAAGATAAAAAAAGCCTACAACCACAAAACTCGCTCATATATTGAAAACCTTTATAAAAATTCAAAATTATTTAAACTCAACACCTAGATCTCCAACTACCAAAGACCCTAATACTGATTTTATAACCCAAAAGCTACAAGGATATAATAAGTTAATAGCACAATCAGGCACCAATGCAAATCTAGTAAAAACATGTTATAGTTATGGACTACTTAGCATAGTTTATACCCAAACAGGAGATGAAATATCTACCATACCGGAGCTATACAAAGCCTTTATGAACTATAAAAGAATTACCAAAGGAACATTATTTTATATAAAGTTTTATTCAGCACCAGCAGAGATATTATTTGATGAGATAAAACCAATTATACAAGTTATAAAGATTGGTTTGACCAGAGATATGATAATTCCAGAAGATATCGAAATGCAGCAAGAAATACAAAGGATTGAGATACCAGAATTTTACGCCAACAAAAGAGTTATAGGGATAGCAACTATCCTAATGAACTAACTAACAATTATTTAAACGGAAATTCAGTAT</gDNA_template>
            <first_frame> Y  K  N  A  E  L  C  R  S  E  D  R  K  I  P  E  L  Q  G  D  V  G  K  L  H  K  T  H  D  N  V  C  L  N  A  A  T  A  S  T  S  T  T  K  G  V  S  G  I  R  Y  T  N  L  N  M  N  K  I  F  D  K  P  F  I  P  K  N  Q  K  D  S  L  F  I  P  P  Q  I  T  T  Y  S  E  S  L  S  Q  D  K  K  S  L  Q  P  Q  N  S  L  I  Y  *  K  P  L  *  K  F  K  I  I  *  T  Q  H  L  D  L  Q  L  P  K  T  L  I  L  I  L  *  P  K  S  Y  K  D  I  I  S  *  *  H  N  Q  A  P  M  Q  I  *  *  K  H  V  I  V  M  D  Y  L  A  *  F  I  P  K  Q  E  M  K  Y  L  P  Y  R  S  Y  T  K  P  L  *  T  I  K  E  L  P  K  E  H  Y  F  I  *  S  F  I  Q  H  Q  Q  R  Y  Y  L  M  R  *  N  Q  L  Y  K  L  *  R  L  V  *  P  E  I  *  *  F  Q  K  I  S  K  C  S  K  K  Y  K  G  L  R  Y  Q  N  F  T  P  T  K  E  L  *  G  *  Q  L  S  *  *  T  N  *  Q  L  F  K  R  K  F  S   </first_frame>
            <second_frame>  I  K  M  R  S  Y  V  D  R  K  T  E  K  F  Q  S  Y  K  E  T  L  G  N  S  I  K  P  M  T  M  F  V  *  M  Q  L  Q  P  A  H  L  Q  Q  K  E  S  V  E  *  D  I  Q  I  *  I  *  T  K  S  L  I  N  H  L  F  Q  R  T  K  K  T  H  Y  L  Y  H  H  K  *  L  L  T  Q  K  V  *  A  K  I  K  K  A  Y  N  H  K  T  R  S  Y  I  E  N  L  Y  K  N  S  K  L  F  K  L  N  T  *  I  S  N  Y  Q  R  P  *  Y  *  F  Y  N  P  K  A  T  R  I  *  *  V  N  S  T  I  R  H  Q  C  K  S  S  K  N  M  L  *  L  W  T  T  *  H  S  L  Y  P  N  R  R  *  N  I  Y  H  T  G  A  I  Q  S  L  Y  E  L  *  K  N  Y  Q  R  N  I  I  L  Y  K  V  L  F  S  T  S  R  D  I  I  *  *  D  K  T  N  Y  T  S  Y  K  D  W  F  D  Q  R  Y  D  N  S  R  R  Y  R  N  A  A  R  N  T  K  D  *  D  T  R  I  L  R  Q  Q  K  S  Y  R  D  S  N  Y  P  N  E  L  T  N  N  Y  L  N  G  N  S  V  </second_frame>
            <third_frame>   *  K  C  G  A  M  S  I  G  R  Q  K  N  S  R  A  T  R  R  R  W  E  T  P  *  N  P  *  Q  C  L  F  K  C  S  Y  S  Q  H  I  Y  N  K  R  S  Q  W  N  K  I  Y  K  F  K  Y  E  Q  N  L  *  *  T  I  Y  S  K  E  P  K  R  L  I  I  Y  T  T  T  N  N  Y  L  L  R  K  F  K  P  R  *  K  K  P  T  T  T  K  L  A  H  I  L  K  T  F  I  K  I  Q  N  Y  L  N  S  T  P  R  S  P  T  T  K  D  P  N  T  D  F  I  T  Q  K  L  Q  G  Y  N  K  L  I  A  Q  S  G  T  N  A  N  L  V  K  T  C  Y  S  Y  G  L  L  S  I  V  Y  T  Q  T  G  D  E  I  S  T  I  P  E  L  Y  K  A  F  M  N  Y  K  R  I  T  K  G  T  L  F  Y  I  K  F  Y  S  A  P  A  E  I  L  F  D  E  I  K  P  I  I  Q  V  I  K  I  G  L  T  R  D  M  I  I  P  E  D  I  E  M  Q  Q  E  I  Q  R  I  E  I  P  E  F  Y  A  N  K  R  V  I  G  I  A  T  I  L  M  N  *  L  T  I  I  *  T  E  I  Q  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1126" stop="1632"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKPTTTKLAHILKTFIKIQNYLNSTPRSPTTKDPNTDFITQKLQGYNKLIAQSGTNANLVKTCYSYGLLSIVYTQTGDEISTIPELYKAFMNYKRITKGTLFYIKFYSAPAEILFDEIKPIIQVIKIGLTRDMIIPEDIEMQQEIQRIEIPEFYANKRVIGIATILMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="2430" PGL_stop="2572"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2430" e_stop="2572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="2430" e_stop="2572" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2430" stop="2572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2430" stop="2572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2430" stop="2572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2430" stop="2572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAATCTCTTGTTGATAATAATTGTTTATCATATTTTAATAATGTTCTAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAGGTATGCTCAGACTATGCCATCCTAAGGTTGAAACCGATAAGCAAGAAGG</gDNA_template>
            <first_frame> I  I  S  C  *  *  *  L  F  I  I  F  *  *  C  S  N  N  H  L  *  K  V  C  Y  R  N  I  L  R  I  G  M  L  R  L  C  H  P  K  V  E  T  D  K  Q  E   </first_frame>
            <second_frame>  *  S  L  V  D  N  N  C  L  S  Y  F  N  N  V  L  I  T  I  F  R  K  F  A  T  E  I  F  C  E  *  V  C  S  D  Y  A  I  L  R  L  K  P  I  S  K  K  </second_frame>
            <third_frame>   N  L  L  L  I  I  I  V  Y  H  I  L  I  M  F  *  *  P  S  L  E  S  L  L  Q  K  Y  S  A  N  R  Y  A  Q  T  M  P  S  *  G  *  N  R  *  A  R  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0076I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="7065" PGL_stop="6923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7065" e_stop="6923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="7065" e_stop="6923" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7065" stop="6923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7065" stop="6923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7065" stop="6923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7065" stop="6923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATCTTTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTCTAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAGGTATGCTCAGACTATGTCATCCTAAGGTTGAAATCGATAGGCAAGAAGG</gDNA_template>
            <first_frame> I  I  F  C  *  L  *  L  F  I  M  F  *  *  C  S  N  N  H  L  *  K  V  C  Y  R  N  I  L  R  I  G  M  L  R  L  C  H  P  K  V  E  I  D  R  Q  E   </first_frame>
            <second_frame>  *  S  F  V  D  Y  N  C  L  S  C  F  N  N  V  L  I  T  I  F  R  K  F  A  T  E  I  F  C  E  *  V  C  S  D  Y  V  I  L  R  L  K  S  I  G  K  K  </second_frame>
            <third_frame>   N  L  L  L  I  I  I  V  Y  H  V  L  I  M  F  *  *  P  S  L  E  S  L  L  Q  K  Y  S  A  N  R  Y  A  Q  T  M  S  S  *  G  *  N  R  *  A  R  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0076I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="16068" PGL_stop="15645"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16068" e_stop="15645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="16068" e_stop="15645" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16068" stop="15645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAACCCTTCGACGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCAGAAAACAAGTACCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACTAATTTCGCAACTACTGTTCACGACAGCAAAACTGAAGCTGCAGGTCACCAAATTCAACTCTGTCAGTTCCTAATCAAACATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGCTGTTAGGGCTGAATTTTGACTGCGAAAACTGCCCTCTTTCTCTCTTTTTGGCTGCTGAAAAAAACTCTCTGTGTATAT</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  R  K  Q  V  P  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  T  T  V  H  D  S  K  T  E  A  A  G  H  Q  I  Q  L  C  Q  F  L  I  K  H  *  D  E  D  N  M  L  S  K  N  Q  L  N  R  T  R  N  E  A  G  I  A  I  *  S  W  L  L  G  L  N  F  D  C  E  N  C  P  L  S  L  F  L  A  A  E  K  N  S  L  C  I  </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  S  T  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  E  N  K  Y  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  L  I  S  Q  L  L  F  T  T  A  K  L  K  L  Q  V  T  K  F  N  S  V  S  S  *  S  N  I  E  M  K  I  I  C  C  P  K  I  S  S  I  G  Q  E  T  K  R  E  S  Q  F  E  V  G  C  *  G  *  I  L  T  A  K  T  A  L  F  L  S  F  W  L  L  K  K  T  L  C  V  Y </second_frame>
            <third_frame>   P  R  F  T  W  K  T  L  R  R  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  Q  K  T  S  T  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  *  F  R  N  Y  C  S  R  Q  Q  N  *  S  C  R  S  P  N  S  T  L  S  V  P  N  Q  T  L  R  *  R  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  R  S  G  N  R  N  L  K  L  A  V  R  A  E  F  *  L  R  K  L  P  S  F  S  L  F  G  C  *  K  K  L  S  V  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0076I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19668" PGL_stop="22702"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19668" e_stop="20024"/>
            <exon e_start="20232" e_stop="20628"/>
            <exon e_start="21718" e_stop="22702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.946" e_score="0.994"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="19668" e_stop="20024" e_length="357"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.946">
            <gDNA_intron_boundary i_start="20025" i_stop="20231" i_length="207"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20232" e_stop="20628" e_length="397"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20629" i_stop="21717" i_length="1089"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="21718" e_stop="22702" e_length="985"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19668" stop="20024"/>
              <exon start="20232" stop="20434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19803" stop="20024"/>
              <exon start="20232" stop="20478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19826" stop="20024"/>
              <exon start="20232" stop="20418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19827" stop="20024"/>
              <exon start="20232" stop="20416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19830" stop="20024"/>
              <exon start="20232" stop="20628"/>
              <exon start="21718" stop="21762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19851" stop="20024"/>
              <exon start="20232" stop="20628"/>
              <exon start="21718" stop="21851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19851" stop="20024"/>
              <exon start="20232" stop="20628"/>
              <exon start="21718" stop="21779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19912" stop="20024"/>
              <exon start="20232" stop="20628"/>
              <exon start="21718" stop="21966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21718" stop="22254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21843" stop="22582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21897" stop="22702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22278" stop="22693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTATTAATTATTACTCTTTGCTTTCCTCTTTCTTCTTTTACCTTTTGTCATCTCTAGGGTTTCAGACAAAGCAGCCAAATATATTTTTTATATATATATATATATAAACAACAAACTACATCTCTTACTTACACCAACTACTCTACTTTTGCTTTTATTTTTTATGAGAGAATGATAAAAGGTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAG : ATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGTGTACATCATCATCCATCAAGAGCCTTAGGGGATCTGACTGGGATTAAGAAGCATTTCTGTAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAATGTTCAAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCTAG : GAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAACAATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATACACTTCAAAACTTCCAAATGAAACAAGAACAGCAACAACAAAATAACGACCTCTCCTCTCAGTTATTCATTCAAAACCCTAATGGCAATAGTAGTAACATGTTCGGTGCACCACCTCCTCATATGAGCGCAACTGCATTGCTACAAAAAGCAGCACAAATTGGAGTAACTTCTTCTTCTCATACTGCTAATAACATGAGCGCCACAACTTTTTTCAGTCCTACTACCAGTACAACAACTGGCATTGCAATGTCAGGATCAGGATCAGGAGCAGGAGTAGCACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATACAAACACTGATTTTGTTACTGGTAATACGTCTTTTCCTGATTTTGGTGCGAGTGTCACCCCTGGGTTCATGGAACAAGTCCATGACATGCAAAACATGATGGCTACTACTGCACCTTCTTTGCCATGTACTAGTTTTGATGAAGGATTTGGTCGCGGCGCGCATTTGATGAGACAAGGTAAAGAAAATAATGAAGGGTTGACAAGAGATTTTTTGGGACTTAGAGCATTTCCACATCACAGGGATTTTCTCAGTACTACTACACCACCTGCTGCTCTTCATTATAACATGGGTTCTTCTGCTGCTGCTGCTGCTCCTGCTTCATTTGATCAACATCATCATCATCATCAGAATCAAAATCAAAATCAATTACCCTGGCAAAATTAGTTCTACTATGATTTCTGAATTTTATTTAGACAACAATACTTAGTATTATATTTTGTTGTTGTTTTGTGTCAGTGTTAAAAAGTCTTGGAAGGGAGCTAAGCACCCATCTTAAATTGCTTTTTATTTATATAATATTTTTGTCTTTTCAGGTTCAGTTATATT</gDNA_template>
            <first_frame> N  Y  *  L  L  L  F  A  F  L  F  L  L  L  P  F  V  I  S  R  V  S  D  K  A  A  K  Y  I  F  Y  I  Y  I  Y  I  N  N  K  L  H  L  L  L  T  P  T  T  L  L  L  L  L  F  F  M  R  E  *  *  K  V  C  *  E  M  I  V  C  Q  I  *  Q  V  H  L  M  K  Q  A  Y  L  Q  P  T  I  E  L  K  L  V  V  M  F  S  T  H  N  Y  K  T  F  K  P  N  H  L  L  T  R  R  R  E  I  Y  Q  E  I  Q  :  I  Q  K  Q  K  L  *  H  Y  L  Q  E  V  Y  W  Q  P  I  D  L  Y  V  R  Y  V  T  K  D  F  K  E  I  K  I  F  N  Y  I  E  E  D  I  I  C  P  G  N  *  S  K  E  A  I  K  K  *  R  R  K  Y  M  C  V  Q  K  H  H  V  Y  I  I  I  H  Q  E  P  *  G  I  *  L  G  L  R  S  I  S  V  E  N  M  V  R  K  N  G  N  V  K  N  V  Q  N  V  M  Q  F  N  L  I  G  K  L  T  L  R  F  V  V  Q  E  S  I  D  V  I  V  E  P  F  S  L   : G  G  I  V  S  L  H  T  E  P  F  V  M  L  *  Q  K  K  V  Q  E  Q  *  S  H  H  Q  I  L  Q  L  L  I  I  L  I  F  I  H  F  K  T  S  K  *  N  K  N  S  N  N  K  I  T  T  S  P  L  S  Y  S  F  K  T  L  M  A  I  V  V  T  C  S  V  H  H  L  L  I  *  A  Q  L  H  C  Y  K  K  Q  H  K  L  E  *  L  L  L  L  I  L  L  I  T  *  A  P  Q  L  F  S  V  L  L  P  V  Q  Q  L  A  L  Q  C  Q  D  Q  D  Q  E  Q  E  *  H  V  N  I  I  H  L  K  I  I  I  I  I  I  I  Q  T  L  I  L  L  L  V  I  R  L  F  L  I  L  V  R  V  S  P  L  G  S  W  N  K  S  M  T  C  K  T  *  W  L  L  L  H  L  L  C  H  V  L  V  L  M  K  D  L  V  A  A  R  I  *  *  D  K  V  K  K  I  M  K  G  *  Q  E  I  F  W  D  L  E  H  F  H  I  T  G  I  F  S  V  L  L  H  H  L  L  L  F  I  I  T  W  V  L  L  L  L  L  L  L  L  L  H  L  I  N  I  I  I  I  I  R  I  K  I  K  I  N  Y  P  G  K  I  S  S  T  M  I  S  E  F  Y  L  D  N  N  T  *  Y  Y  I  L  L  L  F  C  V  S  V  K  K  S  W  K  G  A  K  H  P  S  *  I  A  F  Y  L  Y  N  I  F  V  F  S  G  S  V  I   </first_frame>
            <second_frame>  T  I  N  Y  Y  S  L  L  S  S  F  F  F  Y  L  L  S  S  L  G  F  Q  T  K  Q  P  N  I  F  F  I  Y  I  Y  I  *  T  T  N  Y  I  S  Y  L  H  Q  L  L  Y  F  C  F  Y  F  L  *  E  N  D  K  R  Y  A  R  R  *  *  Y  V  K  F  N  K  C  I  *  *  S  K  H  I  F  N  Q  Q  *  N  *  N  W  *  S  C  S  L  P  T  T  T  K  H  S  N  P  T  T  S  *  Q  E  E  E  K  S  T  R  K  S  R :   S  R  S  R  S  C  S  I  I  S  K  K  S  I  G  N  Q  *  I  C  M  *  D  M  *  Q  R  I  S  K  R  S  K  S  S  T  T  *  K  R  T  *  F  A  L  E  I  K  A  K  K  Q  *  R  S  E  E  E  S  I  C  V  S  R  S  I  M  C  T  S  S  S  I  K  S  L  R  G  S  D  W  D  *  E  A  F  L  *  K  T  W  *  E  K  M  E  M  *  K  M  F  K  T  L  C  S  S  I  *  L  E  S  S  L  *  D  L  W  Y  K  R  V  *  M  *  L  W  N  P  F  L  *  :  E  G  *  F  H  Y  T  Q  S  L  L  *  C  F  N  R  R  K  F  K  N  N  N  P  T  T  K  F  F  N  F  S  S  S  *  S  S  Y  T  S  K  L  P  N  E  T  R  T  A  T  T  K  *  R  P  L  L  S  V  I  H  S  K  P  *  W  Q  *  *  *  H  V  R  C  T  T  S  S  Y  E  R  N  C  I  A  T  K  S  S  T  N  W  S  N  F  F  F  S  Y  C  *  *  H  E  R  H  N  F  F  Q  S  Y  Y  Q  Y  N  N  W  H  C  N  V  R  I  R  I  R  S  R  S  S  T  S  I  S  S  I  *  K  *  *  *  *  *  *  Y  K  H  *  F  C  Y  W  *  Y  V  F  S  *  F  W  C  E  C  H  P  W  V  H  G  T  S  P  *  H  A  K  H  D  G  Y  Y  C  T  F  F  A  M  Y  *  F  *  *  R  I  W  S  R  R  A  F  D  E  T  R  *  R  K  *  *  R  V  D  K  R  F  F  G  T  *  S  I  S  T  S  Q  G  F  S  Q  Y  Y  Y  T  T  C  C  S  S  L  *  H  G  F  F  C  C  C  C  C  S  C  F  I  *  S  T  S  S  S  S  S  E  S  K  S  K  S  I  T  L  A  K  L  V  L  L  *  F  L  N  F  I  *  T  T  I  L  S  I  I  F  C  C  C  F  V  S  V  L  K  S  L  G  R  E  L  S  T  H  L  K  L  L  F  I  Y  I  I  F  L  S  F  Q  V  Q  L  Y  </second_frame>
            <third_frame>   L  L  I  I  T  L  C  F  P  L  S  S  F  T  F  C  H  L  *  G  F  R  Q  S  S  Q  I  Y  F  L  Y  I  Y  I  Y  K  Q  Q  T  T  S  L  T  Y  T  N  Y  S  T  F  A  F  I  F  Y  E  R  M  I  K  G  M  L  G  D  D  S  M  S  N  L  T  S  A  S  N  E  A  S  I  S  S  T  N  N  R  I  E  I  G  S  H  V  L  Y  P  Q  L  Q  N  I  Q  T  Q  P  P  P  N  K  K  K  R  N  L  P  G  N  P   : D  P  E  A  E  V  V  A  L  S  P  R  S  L  L  A  T  N  R  F  V  C  E  I  C  N  K  G  F  Q  R  D  Q  N  L  Q  L  H  R  R  G  H  N  L  P  W  K  L  K  Q  R  S  N  K  E  V  K  K  K  V  Y  V  C  P  E  A  S  C  V  H  H  H  P  S  R  A  L  G  D  L  T  G  I  K  K  H  F  C  R  K  H  G  E  K  K  W  K  C  E  K  C  S  K  R  Y  A  V  Q  S  D  W  K  A  H  S  K  I  C  G  T  R  E  Y  R  C  D  C  G  T  L  F  S  R :   R  D  S  F  I  T  H  R  A  F  C  D  A  L  T  E  E  S  S  R  T  I  I  P  P  P  N  S  S  T  S  H  H  L  N  L  H  T  L  Q  N  F  Q  M  K  Q  E  Q  Q  Q  Q  N  N  D  L  S  S  Q  L  F  I  Q  N  P  N  G  N  S  S  N  M  F  G  A  P  P  P  H  M  S  A  T  A  L  L  Q  K  A  A  Q  I  G  V  T  S  S  S  H  T  A  N  N  M  S  A  T  T  F  F  S  P  T  T  S  T  T  T  G  I  A  M  S  G  S  G  S  G  A  G  V  A  R  Q  Y  H  P  F  E  N  N  N  N  N  N  N  T  N  T  D  F  V  T  G  N  T  S  F  P  D  F  G  A  S  V  T  P  G  F  M  E  Q  V  H  D  M  Q  N  M  M  A  T  T  A  P  S  L  P  C  T  S  F  D  E  G  F  G  R  G  A  H  L  M  R  Q  G  K  E  N  N  E  G  L  T  R  D  F  L  G  L  R  A  F  P  H  H  R  D  F  L  S  T  T  T  P  P  A  A  L  H  Y  N  M  G  S  S  A  A  A  A  A  P  A  S  F  D  Q  H  H  H  H  H  Q  N  Q  N  Q  N  Q  L  P  W  Q  N  *  F  Y  Y  D  F  *  I  L  F  R  Q  Q  Y  L  V  L  Y  F  V  V  V  L  C  Q  C  *  K  V  L  E  G  S  *  A  P  I  L  N  C  F  L  F  I  *  Y  F  C  L  F  R  F  S  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19727" stop="20024"/>
                    <exon start="20232" stop="20628"/>
                    <exon start="21718" stop="22540"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1515</number_coding_nucleotides>
                  <number_encoded_amino_acids>505</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFRQSSQIYFLYIYIYKQQTTSLTYTNYSTFAFIFYERMIKGMLGDDSMSNLTSASNEASISSTNNRIEIGSHVLYPQLQNIQTQPPPNKKKRNLPGNPDPEAEVVALSPRSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVKKKVYVCPEASCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALTEESSRTIIPPPNSSTSHHLNLHTLQNFQMKQEQQQQNNDLSSQLFIQNPNGNSSNMFGAPPPHMSATALLQKAAQIGVTSSSHTANNMSATTFFSPTTSTTTGIAMSGSGSGAGVARQYHPFENNNNNNNTNTDFVTGNTSFPDFGASVTPGFMEQVHDMQNMMATTAPSLPCTSFDEGFGRGAHLMRQGKENNEGLTRDFLGLRAFPHHRDFLSTTTPPAALHYNMGSSAAAAAPASFDQHHHHHQNQNQNQLPWQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19668" e_stop="20024"/>
            <exon e_start="20232" e_stop="20628"/>
            <exon e_start="21718" e_stop="21830"/>
            <exon e_start="22110" e_stop="22155"/>
            <exon e_start="22261" e_stop="22693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.946" e_score="0.994"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="19668" e_stop="20024" e_length="357"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.946">
            <gDNA_intron_boundary i_start="20025" i_stop="20231" i_length="207"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20232" e_stop="20628" e_length="397"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20629" i_stop="21717" i_length="1089"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21718" e_stop="21830" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21831" i_stop="22109" i_length="279"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22110" e_stop="22155" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22156" i_stop="22260" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="22261" e_stop="22693" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19668" stop="20024"/>
              <exon start="20232" stop="20434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19803" stop="20024"/>
              <exon start="20232" stop="20478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19826" stop="20024"/>
              <exon start="20232" stop="20418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19827" stop="20024"/>
              <exon start="20232" stop="20416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19830" stop="20024"/>
              <exon start="20232" stop="20628"/>
              <exon start="21718" stop="21762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19851" stop="20024"/>
              <exon start="20232" stop="20628"/>
              <exon start="21718" stop="21779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20317" stop="20628"/>
              <exon start="21718" stop="21830"/>
              <exon start="22110" stop="22155"/>
              <exon start="22261" stop="22356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22278" stop="22693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTATTAATTATTACTCTTTGCTTTCCTCTTTCTTCTTTTACCTTTTGTCATCTCTAGGGTTTCAGACAAAGCAGCCAAATATATTTTTTATATATATATATATATAAACAACAAACTACATCTCTTACTTACACCAACTACTCTACTTTTGCTTTTATTTTTTATGAGAGAATGATAAAAGGTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAG : ATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGTGTACATCATCATCCATCAAGAGCCTTAGGGGATCTGACTGGGATTAAGAAGCATTTCTGTAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAATGTTCAAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCTAG : GAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAACAATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATA : CACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATAC : TACTGCACCTTCTTTGCCATGTACTAGTTTTGATGAAGGATTTGGTCGCGGCGCGCATTTGATGAGACAAGGTAAAGAAAATAATGAAGGGTTGACAAGAGATTTTTTGGGACTTAGAGCATTTCCACATCACAGGGATTTTCTCAGTACTACTACACCACCTGCTGCTCTTCATTATAACATGGGTTCTTCTGCTGCTGCTGCTGCTCCTGCTTCATTTGATCAACATCATCATCATCATCAGAATCAAAATCAAAATCAATTACCCTGGCAAAATTAGTTCTACTATGATTTCTGAATTTTATTTAGACAACAATACTTAGTATTATATTTTGTTGTTGTTTTGTGTCAGTGTTAAAAAGTCTTGGAAGGGAGCTAAGCACCCATCTTAAATTGCTTTTTATTTATATAATATTTTTGTCTTTTCAGGTTC</gDNA_template>
            <first_frame> N  Y  *  L  L  L  F  A  F  L  F  L  L  L  P  F  V  I  S  R  V  S  D  K  A  A  K  Y  I  F  Y  I  Y  I  Y  I  N  N  K  L  H  L  L  L  T  P  T  T  L  L  L  L  L  F  F  M  R  E  *  *  K  V  C  *  E  M  I  V  C  Q  I  *  Q  V  H  L  M  K  Q  A  Y  L  Q  P  T  I  E  L  K  L  V  V  M  F  S  T  H  N  Y  K  T  F  K  P  N  H  L  L  T  R  R  R  E  I  Y  Q  E  I  Q  :  I  Q  K  Q  K  L  *  H  Y  L  Q  E  V  Y  W  Q  P  I  D  L  Y  V  R  Y  V  T  K  D  F  K  E  I  K  I  F  N  Y  I  E  E  D  I  I  C  P  G  N  *  S  K  E  A  I  K  K  *  R  R  K  Y  M  C  V  Q  K  H  H  V  Y  I  I  I  H  Q  E  P  *  G  I  *  L  G  L  R  S  I  S  V  E  N  M  V  R  K  N  G  N  V  K  N  V  Q  N  V  M  Q  F  N  L  I  G  K  L  T  L  R  F  V  V  Q  E  S  I  D  V  I  V  E  P  F  S  L   : G  G  I  V  S  L  H  T  E  P  F  V  M  L  *  Q  K  K  V  Q  E  Q  *  S  H  H  Q  I  L  Q  L  L  I  I  L  I  F  I  :  H  V  N  I  I  H  L  K  I  I  I  I  I  I  I   : L  L  H  L  L  C  H  V  L  V  L  M  K  D  L  V  A  A  R  I  *  *  D  K  V  K  K  I  M  K  G  *  Q  E  I  F  W  D  L  E  H  F  H  I  T  G  I  F  S  V  L  L  H  H  L  L  L  F  I  I  T  W  V  L  L  L  L  L  L  L  L  L  H  L  I  N  I  I  I  I  I  R  I  K  I  K  I  N  Y  P  G  K  I  S  S  T  M  I  S  E  F  Y  L  D  N  N  T  *  Y  Y  I  L  L  L  F  C  V  S  V  K  K  S  W  K  G  A  K  H  P  S  *  I  A  F  Y  L  Y  N  I  F  V  F  S  G   </first_frame>
            <second_frame>  T  I  N  Y  Y  S  L  L  S  S  F  F  F  Y  L  L  S  S  L  G  F  Q  T  K  Q  P  N  I  F  F  I  Y  I  Y  I  *  T  T  N  Y  I  S  Y  L  H  Q  L  L  Y  F  C  F  Y  F  L  *  E  N  D  K  R  Y  A  R  R  *  *  Y  V  K  F  N  K  C  I  *  *  S  K  H  I  F  N  Q  Q  *  N  *  N  W  *  S  C  S  L  P  T  T  T  K  H  S  N  P  T  T  S  *  Q  E  E  E  K  S  T  R  K  S  R :   S  R  S  R  S  C  S  I  I  S  K  K  S  I  G  N  Q  *  I  C  M  *  D  M  *  Q  R  I  S  K  R  S  K  S  S  T  T  *  K  R  T  *  F  A  L  E  I  K  A  K  K  Q  *  R  S  E  E  E  S  I  C  V  S  R  S  I  M  C  T  S  S  S  I  K  S  L  R  G  S  D  W  D  *  E  A  F  L  *  K  T  W  *  E  K  M  E  M  *  K  M  F  K  T  L  C  S  S  I  *  L  E  S  S  L  *  D  L  W  Y  K  R  V  *  M  *  L  W  N  P  F  L  *  :  E  G  *  F  H  Y  T  Q  S  L  L  *  C  F  N  R  R  K  F  K  N  N  N  P  T  T  K  F  F  N  F  S  S  S  *  S  S  Y :   T  S  I  S  S  I  *  K  *  *  *  *  *  *  Y  :  Y  C  T  F  F  A  M  Y  *  F  *  *  R  I  W  S  R  R  A  F  D  E  T  R  *  R  K  *  *  R  V  D  K  R  F  F  G  T  *  S  I  S  T  S  Q  G  F  S  Q  Y  Y  Y  T  T  C  C  S  S  L  *  H  G  F  F  C  C  C  C  C  S  C  F  I  *  S  T  S  S  S  S  S  E  S  K  S  K  S  I  T  L  A  K  L  V  L  L  *  F  L  N  F  I  *  T  T  I  L  S  I  I  F  C  C  C  F  V  S  V  L  K  S  L  G  R  E  L  S  T  H  L  K  L  L  F  I  Y  I  I  F  L  S  F  Q  V  </second_frame>
            <third_frame>   L  L  I  I  T  L  C  F  P  L  S  S  F  T  F  C  H  L  *  G  F  R  Q  S  S  Q  I  Y  F  L  Y  I  Y  I  Y  K  Q  Q  T  T  S  L  T  Y  T  N  Y  S  T  F  A  F  I  F  Y  E  R  M  I  K  G  M  L  G  D  D  S  M  S  N  L  T  S  A  S  N  E  A  S  I  S  S  T  N  N  R  I  E  I  G  S  H  V  L  Y  P  Q  L  Q  N  I  Q  T  Q  P  P  P  N  K  K  K  R  N  L  P  G  N  P   : D  P  E  A  E  V  V  A  L  S  P  R  S  L  L  A  T  N  R  F  V  C  E  I  C  N  K  G  F  Q  R  D  Q  N  L  Q  L  H  R  R  G  H  N  L  P  W  K  L  K  Q  R  S  N  K  E  V  K  K  K  V  Y  V  C  P  E  A  S  C  V  H  H  H  P  S  R  A  L  G  D  L  T  G  I  K  K  H  F  C  R  K  H  G  E  K  K  W  K  C  E  K  C  S  K  R  Y  A  V  Q  S  D  W  K  A  H  S  K  I  C  G  T  R  E  Y  R  C  D  C  G  T  L  F  S  R :   R  D  S  F  I  T  H  R  A  F  C  D  A  L  T  E  E  S  S  R  T  I  I  P  P  P  N  S  S  T  S  H  H  L  N  L  H   : T  R  Q  Y  H  P  F  E  N  N  N  N  N  N  N  T :   T  A  P  S  L  P  C  T  S  F  D  E  G  F  G  R  G  A  H  L  M  R  Q  G  K  E  N  N  E  G  L  T  R  D  F  L  G  L  R  A  F  P  H  H  R  D  F  L  S  T  T  T  P  P  A  A  L  H  Y  N  M  G  S  S  A  A  A  A  A  P  A  S  F  D  Q  H  H  H  H  H  Q  N  Q  N  Q  N  Q  L  P  W  Q  N  *  F  Y  Y  D  F  *  I  L  F  R  Q  Q  Y  L  V  L  Y  F  V  V  V  L  C  Q  C  *  K  V  L  E  G  S  *  A  P  I  L  N  C  F  L  F  I  *  Y  F  C  L  F  R  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19727" stop="20024"/>
                    <exon start="20232" stop="20628"/>
                    <exon start="21718" stop="21830"/>
                    <exon start="22110" stop="22155"/>
                    <exon start="22261" stop="22540"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1131</number_coding_nucleotides>
                  <number_encoded_amino_acids>377</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFRQSSQIYFLYIYIYKQQTTSLTYTNYSTFAFIFYERMIKGMLGDDSMSNLTSASNEASISSTNNRIEIGSHVLYPQLQNIQTQPPPNKKKRNLPGNPDPEAEVVALSPRSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVKKKVYVCPEASCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALTEESSRTIIPPPNSSTSHHLNLHTRQYHPFENNNNNNNTTAPSLPCTSFDEGFGRGAHLMRQGKENNEGLTRDFLGLRAFPHHRDFLSTTTPPAALHYNMGSSAAAAAPASFDQHHHHHQNQNQNQLPWQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39771" PGL_stop="44095"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39771" e_stop="39898"/>
            <exon e_start="41770" e_stop="42246"/>
            <exon e_start="42835" e_stop="44095"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.996" e_score="0.992"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="0.982"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="39771" e_stop="39898" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39899" i_stop="41769" i_length="1871"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="41770" e_stop="42246" e_length="477"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42247" i_stop="42834" i_length="588"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="42835" e_stop="44095" e_length="1261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39771" stop="39898"/>
              <exon start="41770" stop="42111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39782" stop="39898"/>
              <exon start="41770" stop="42064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41788" stop="42246"/>
              <exon start="42835" stop="43032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41810" stop="42246"/>
              <exon start="42835" stop="42934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41950" stop="42246"/>
              <exon start="42835" stop="43311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42080" stop="42246"/>
              <exon start="42835" stop="43146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43079" stop="43709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43212" stop="43800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43545" stop="44077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43603" stop="44095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614582" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGACTTGGTCTAAATGAGGAAGTGCAGCCGACCATGGAAACCAATACAAGATTTGCCGACGTTAAGGGTGTTGATGAGGCTAAAGGGGAGTTGGAAGAAATTGTTCACTATCTCCGAGACCCTAAG : CGATTCACTCGTCTTGGTGGCAAACTCCCAAAGGGTGTGCTACTTGTTGGTCCTCCTGGAACCGGTAAGACCATGTTGGCAAGAGCTATAGCAGGAGAAGCTGGGGTTCCCTTTTTCTCATGCAGTGGTAGTGAGTTTGAGGAAATGTTTGTGGGTGTTGGAGCCCGGAGAGTAAGAGACCTTTTTGCAGCTGCTAAGAAACGATCACCCTGCATTATATTCATTGATGAAATTGATGCCATTGGAGGAAGCCGTAACCCAAAGGACCAACAATATATGAGGATGACTTTGAATCAGTTGCTTGTTGAGCTGGATGGGTTCAAACAAAATGATGGAGTCATTGTGATTGCGGCCACTAACTTCCCAGAATCATTGGACAAGGCACTGGTGAGACCTGGACGATTCGATCGCAACATTGTTGTCCCAAATCCTGATGTTGAAGGTCGGAAGCAGATTCTGGAATCTCACATGTCAAAG : ATTGTCAAGGCAGATGATGTCGACCTTATGATCATTTCTAGGGGGACTCCTGGGTTTTCCGGGGCTGACCTTGCCAATTTGGTTAACATTGCTGCTGTGAAGGCTGCAATGGAAGGTGCTAAAGCTGTAAGCTTGGCTGATCTAGAGTATGCTAAGGACAAGATCATGATGGGAAGTGAGCGCAAATCAGCTTTCATATCCAAAGAGACGAGAAAGCTTACAGCCTACCATGAAGGTGGCCATGCTCTTGTGGCTATTCATACAGATGGGGCTCTTCCAGTGCACAAGGCAACCATTGTTCCACGTGGAATGGCTCTTGGTATGGTTGCTCAATTGCCAGAGAAGGATGAGACTAGTATGTCCCGTAAGCAGATGCTTGCTCGGCTTGATGTTTGCATGGGTGGACGAGTTGCTGAAGAGCTCATTTTTGGAGAAAGTGAAGTAACTTCTGGTCCTTCTAGCGATCTCCAGCAAGCAACCAATCTAGCCAGGGCCATGGTTACAAAGTTTGGTATGAGCAAAGAAGTGGGGCTTGTTACCCACAACTACGATGATAATGGGAAGAGTATGAGCACTGAAACGAGGCTTCTCATTGAGAAGGAAGTAAGAGAATTACTTGAAAGGGCTTACAACAATGCGAAAATGATTCTCACCACCCATATCAAAGAGCTTCATGCTCTTGCCAATGCATTGCTTGAGCAGGAAACGATGACCGGAAATCAGATTAAGGCCCTGCTTACCCATGTCAATTCTAAACAAACACAGCAAAAGAAACCTCAATTAGTCTCAGAGGAGAGTCCATCACAGCCCAATCCATCTCCTCCATCAAATCCGGCTGCTGCAGCAGCAGCAGCAGCTGCAGCCGCTGCAGCTGCGGCCACTGCCGCAGCCAAAACCAAAGGCATTGCTCCTGTAGGATCTTAGTGTGGTAACTTGTTGCTAGTTTTTATCAATCCATGTGCATATAGTGGATCATTCTCATGCATGTTTTCCACCCTTTCGTTGCTATCAAGAAGGTGATTAATGTGTGGAGGTGAGTTTTAGAGGTCAACGGAAATAGTAGCAGATAAATGTCATAAATACTGTCAAGTGTGTCATTTTTAGCTGACCTCTTTCTTCTGGTGTTGTAAGCCACTTAGCTGACCTTTACAGATCTTAGTTTGATTATCTGCAGACTCATTGCCAATTGAGTTGGACACTTCTCATGAGTATATTGTAAAATTAGGAGTGTCACAAACTTCATAGCTTTCCAATAATGCAA</gDNA_template>
            <first_frame> Q  D  L  V  *  M  R  K  C  S  R  P  W  K  P  I  Q  D  L  P  T  L  R  V  L  M  R  L  K  G  S  W  K  K  L  F  T  I  S  E  T  L  S :   D  S  L  V  L  V  A  N  S  Q  R  V  C  Y  L  L  V  L  L  E  P  V  R  P  C  W  Q  E  L  *  Q  E  K  L  G  F  P  F  S  H  A  V  V  V  S  L  R  K  C  L  W  V  L  E  P  G  E  *  E  T  F  L  Q  L  L  R  N  D  H  P  A  L  Y  S  L  M  K  L  M  P  L  E  E  A  V  T  Q  R  T  N  N  I  *  G  *  L  *  I  S  C  L  L  S  W  M  G  S  N  K  M  M  E  S  L  *  L  R  P  L  T  S  Q  N  H  W  T  R  H  W  *  D  L  D  D  S  I  A  T  L  L  S  Q  I  L  M  L  K  V  G  S  R  F  W  N  L  T  C  Q  R :   L  S  R  Q  M  M  S  T  L  *  S  F  L  G  G  L  L  G  F  P  G  L  T  L  P  I  W  L  T  L  L  L  *  R  L  Q  W  K  V  L  K  L  *  A  W  L  I  *  S  M  L  R  T  R  S  *  W  E  V  S  A  N  Q  L  S  Y  P  K  R  R  E  S  L  Q  P  T  M  K  V  A  M  L  L  W  L  F  I  Q  M  G  L  F  Q  C  T  R  Q  P  L  F  H  V  E  W  L  L  V  W  L  L  N  C  Q  R  R  M  R  L  V  C  P  V  S  R  C  L  L  G  L  M  F  A  W  V  D  E  L  L  K  S  S  F  L  E  K  V  K  *  L  L  V  L  L  A  I  S  S  K  Q  P  I  *  P  G  P  W  L  Q  S  L  V  *  A  K  K  W  G  L  L  P  T  T  T  M  I  M  G  R  V  *  A  L  K  R  G  F  S  L  R  R  K  *  E  N  Y  L  K  G  L  T  T  M  R  K  *  F  S  P  P  I  S  K  S  F  M  L  L  P  M  H  C  L  S  R  K  R  *  P  E  I  R  L  R  P  C  L  P  M  S  I  L  N  K  H  S  K  R  N  L  N  *  S  Q  R  R  V  H  H  S  P  I  H  L  L  H  Q  I  R  L  L  Q  Q  Q  Q  Q  L  Q  P  L  Q  L  R  P  L  P  Q  P  K  P  K  A  L  L  L  *  D  L  S  V  V  T  C  C  *  F  L  S  I  H  V  H  I  V  D  H  S  H  A  C  F  P  P  F  R  C  Y  Q  E  G  D  *  C  V  E  V  S  F  R  G  Q  R  K  *  *  Q  I  N  V  I  N  T  V  K  C  V  I  F  S  *  P  L  S  S  G  V  V  S  H  L  A  D  L  Y  R  S  *  F  D  Y  L  Q  T  H  C  Q  L  S  W  T  L  L  M  S  I  L  *  N  *  E  C  H  K  L  H  S  F  P  I  M  Q </first_frame>
            <second_frame>  R  T  W  S  K  *  G  S  A  A  D  H  G  N  Q  Y  K  I  C  R  R  *  G  C  *  *  G  *  R  G  V  G  R  N  C  S  L  S  P  R  P  *   : A  I  H  S  S  W  W  Q  T  P  K  G  C  A  T  C  W  S  S  W  N  R  *  D  H  V  G  K  S  Y  S  R  R  S  W  G  S  L  F  L  M  Q  W  *  *  V  *  G  N  V  C  G  C  W  S  P  E  S  K  R  P  F  C  S  C  *  E  T  I  T  L  H  Y  I  H  *  *  N  *  C  H  W  R  K  P  *  P  K  G  P  T  I  Y  E  D  D  F  E  S  V  A  C  *  A  G  W  V  Q  T  K  *  W  S  H  C  D  C  G  H  *  L  P  R  I  I  G  Q  G  T  G  E  T  W  T  I  R  S  Q  H  C  C  P  K  S  *  C  *  R  S  E  A  D  S  G  I  S  H  V  K   : D  C  Q  G  R  *  C  R  P  Y  D  H  F  *  G  D  S  W  V  F  R  G  *  P  C  Q  F  G  *  H  C  C  C  E  G  C  N  G  R  C  *  S  C  K  L  G  *  S  R  V  C  *  G  Q  D  H  D  G  K  *  A  Q  I  S  F  H  I  Q  R  D  E  K  A  Y  S  L  P  *  R  W  P  C  S  C  G  Y  S  Y  R  W  G  S  S  S  A  Q  G  N  H  C  S  T  W  N  G  S  W  Y  G  C  S  I  A  R  E  G  *  D  *  Y  V  P  *  A  D  A  C  S  A  *  C  L  H  G  W  T  S  C  *  R  A  H  F  W  R  K  *  S  N  F  W  S  F  *  R  S  P  A  S  N  Q  S  S  Q  G  H  G  Y  K  V  W  Y  E  Q  R  S  G  A  C  Y  P  Q  L  R  *  *  W  E  E  Y  E  H  *  N  E  A  S  H  *  E  G  S  K  R  I  T  *  K  G  L  Q  Q  C  E  N  D  S  H  H  P  Y  Q  R  A  S  C  S  C  Q  C  I  A  *  A  G  N  D  D  R  K  S  D  *  G  P  A  Y  P  C  Q  F  *  T  N  T  A  K  E  T  S  I  S  L  R  G  E  S  I  T  A  Q  S  I  S  S  I  K  S  G  C  C  S  S  S  S  S  C  S  R  C  S  C  G  H  C  R  S  Q  N  Q  R  H  C  S  C  R  I  L  V  W  *  L  V  A  S  F  Y  Q  S  M  C  I  *  W  I  I  L  M  H  V  F  H  P  F  V  A  I  K  K  V  I  N  V  W  R  *  V  L  E  V  N  G  N  S  S  R  *  M  S  *  I  L  S  S  V  S  F  L  A  D  L  F  L  L  V  L  *  A  T  *  L  T  F  T  D  L  S  L  I  I  C  R  L  I  A  N  *  V  G  H  F  S  *  V  Y  C  K  I  R  S  V  T  N  F  I  A  F  Q  *  C   </second_frame>
            <third_frame>   G  L  G  L  N  E  E  V  Q  P  T  M  E  T  N  T  R  F  A  D  V  K  G  V  D  E  A  K  G  E  L  E  E  I  V  H  Y  L  R  D  P  K  :  R  F  T  R  L  G  G  K  L  P  K  G  V  L  L  V  G  P  P  G  T  G  K  T  M  L  A  R  A  I  A  G  E  A  G  V  P  F  F  S  C  S  G  S  E  F  E  E  M  F  V  G  V  G  A  R  R  V  R  D  L  F  A  A  A  K  K  R  S  P  C  I  I  F  I  D  E  I  D  A  I  G  G  S  R  N  P  K  D  Q  Q  Y  M  R  M  T  L  N  Q  L  L  V  E  L  D  G  F  K  Q  N  D  G  V  I  V  I  A  A  T  N  F  P  E  S  L  D  K  A  L  V  R  P  G  R  F  D  R  N  I  V  V  P  N  P  D  V  E  G  R  K  Q  I  L  E  S  H  M  S  K  :  I  V  K  A  D  D  V  D  L  M  I  I  S  R  G  T  P  G  F  S  G  A  D  L  A  N  L  V  N  I  A  A  V  K  A  A  M  E  G  A  K  A  V  S  L  A  D  L  E  Y  A  K  D  K  I  M  M  G  S  E  R  K  S  A  F  I  S  K  E  T  R  K  L  T  A  Y  H  E  G  G  H  A  L  V  A  I  H  T  D  G  A  L  P  V  H  K  A  T  I  V  P  R  G  M  A  L  G  M  V  A  Q  L  P  E  K  D  E  T  S  M  S  R  K  Q  M  L  A  R  L  D  V  C  M  G  G  R  V  A  E  E  L  I  F  G  E  S  E  V  T  S  G  P  S  S  D  L  Q  Q  A  T  N  L  A  R  A  M  V  T  K  F  G  M  S  K  E  V  G  L  V  T  H  N  Y  D  D  N  G  K  S  M  S  T  E  T  R  L  L  I  E  K  E  V  R  E  L  L  E  R  A  Y  N  N  A  K  M  I  L  T  T  H  I  K  E  L  H  A  L  A  N  A  L  L  E  Q  E  T  M  T  G  N  Q  I  K  A  L  L  T  H  V  N  S  K  Q  T  Q  Q  K  K  P  Q  L  V  S  E  E  S  P  S  Q  P  N  P  S  P  P  S  N  P  A  A  A  A  A  A  A  A  A  A  A  A  A  A  A  T  A  A  A  K  T  K  G  I  A  P  V  G  S  *  C  G  N  L  L  L  V  F  I  N  P  C  A  Y  S  G  S  F  S  C  M  F  S  T  L  S  L  L  S  R  R  *  L  M  C  G  G  E  F  *  R  S  T  E  I  V  A  D  K  C  H  K  Y  C  Q  V  C  H  F  *  L  T  S  F  F  W  C  C  K  P  L  S  *  P  L  Q  I  L  V  *  L  S  A  D  S  L  P  I  E  L  D  T  S  H  E  Y  I  V  K  L  G  V  S  Q  T  S  *  L  S  N  N  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39773" stop="39898"/>
                    <exon start="41770" stop="42246"/>
                    <exon start="42835" stop="43758"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1524</number_coding_nucleotides>
                  <number_encoded_amino_acids>508</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLGLNEEVQPTMETNTRFADVKGVDEAKGELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMRMTLNQLLVELDGFKQNDGVIVIAATNFPESLDKALVRPGRFDRNIVVPNPDVEGRKQILESHMSKIVKADDVDLMIISRGTPGFSGADLANLVNIAAVKAAMEGAKAVSLADLEYAKDKIMMGSERKSAFISKETRKLTAYHEGGHALVAIHTDGALPVHKATIVPRGMALGMVAQLPEKDETSMSRKQMLARLDVCMGGRVAEELIFGESEVTSGPSSDLQQATNLARAMVTKFGMSKEVGLVTHNYDDNGKSMSTETRLLIEKEVRELLERAYNNAKMILTTHIKELHALANALLEQETMTGNQIKALLTHVNSKQTQQKKPQLVSEESPSQPNPSPPSNPAAAAAAAAAAAAAAATAAAKTKGIAPVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44086" PGL_stop="43302"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44086" e_stop="43302"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="44086" e_stop="43302" e_length="785"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44086" stop="43302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432419" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAAAGCTATGAAGTTTGTGACACTCCTAATTTTACAATATACTCATGAGAAGTGTCCAACTCAATTGGCAATGAGTCTGCAGATAATCAAACTAAGATCTGTAAAGGTCAGCTAAGTGGCTTACAACACCAGAAGAAAGAGGTCAGCTAAAAATGACACACTTGACAGTATTTATGACATTTATCTGCTACTATTTCCGTTGACCTCTAAAACTCACCTCCACACATTAATCACCTTCTTGATAGCAACGAAAGGGTGGAAAACATGCATGAGAATGATCCACTATATGCACATGGATTGATAAAAACTAGCAACAAGTTACCACACTAAGATCCTACAGGAGCAATGCCTTTGGTTTTGGCTGCGGCAGTGGCCGCAGCTGCAGCGGCTGCAGCTGCTGCTGCTGCTGCAGCAGCCGGATTTGATGGAGGAGATGGATTGGGCTGTGATGGACTCTCCTCTGAGACTAATTGAGGTTTCTTTTGCTGTGTTTGTTTAGAATTGACATGGGTAAGCAGGGCCTTAATCTGATTTCCGGTCATCGTTTCCTGCTCAAGCAATGCATTGGCAAGAGCATGAAGCTCTTTGATATGGGTGGTGAGAATCATTTTCGCATTGTTGTAAGCCCTTTCAAGTAATTCTCTTACTTCCTTCTCAATGAGAAGCCTCGTTTCAGTGCTCATACTCTTCCCATTATCATCGTAGTTGTGGGTAACAAGCCCCACTTCTTTGCTCATACCAAACTTTGTAACCATGGCCCTGGCTAGATTGGTTGCTTGCTGG</gDNA_template>
            <first_frame> W  K  A  M  K  F  V  T  L  L  I  L  Q  Y  T  H  E  K  C  P  T  Q  L  A  M  S  L  Q  I  I  K  L  R  S  V  K  V  S  *  V  A  Y  N  T  R  R  K  R  S  A  K  N  D  T  L  D  S  I  Y  D  I  Y  L  L  L  F  P  L  T  S  K  T  H  L  H  T  L  I  T  F  L  I  A  T  K  G  W  K  T  C  M  R  M  I  H  Y  M  H  M  D  *  *  K  L  A  T  S  Y  H  T  K  I  L  Q  E  Q  C  L  W  F  W  L  R  Q  W  P  Q  L  Q  R  L  Q  L  L  L  L  L  Q  Q  P  D  L  M  E  E  M  D  W  A  V  M  D  S  P  L  R  L  I  E  V  S  F  A  V  F  V  *  N  *  H  G  *  A  G  P  *  S  D  F  R  S  S  F  P  A  Q  A  M  H  W  Q  E  H  E  A  L  *  Y  G  W  *  E  S  F  S  H  C  C  K  P  F  Q  V  I  L  L  L  P  S  Q  *  E  A  S  F  Q  C  S  Y  S  S  H  Y  H  R  S  C  G  *  Q  A  P  L  L  C  S  Y  Q  T  L  *  P  W  P  W  L  D  W  L  L  A   </first_frame>
            <second_frame>  G  K  L  *  S  L  *  H  S  *  F  Y  N  I  L  M  R  S  V  Q  L  N  W  Q  *  V  C  R  *  S  N  *  D  L  *  R  S  A  K  W  L  T  T  P  E  E  R  G  Q  L  K  M  T  H  L  T  V  F  M  T  F  I  C  Y  Y  F  R  *  P  L  K  L  T  S  T  H  *  S  P  S  *  *  Q  R  K  G  G  K  H  A  *  E  *  S  T  I  C  T  W  I  D  K  N  *  Q  Q  V  T  T  L  R  S  Y  R  S  N  A  F  G  F  G  C  G  S  G  R  S  C  S  G  C  S  C  C  C  C  C  S  S  R  I  *  W  R  R  W  I  G  L  *  W  T  L  L  *  D  *  L  R  F  L  L  L  C  L  F  R  I  D  M  G  K  Q  G  L  N  L  I  S  G  H  R  F  L  L  K  Q  C  I  G  K  S  M  K  L  F  D  M  G  G  E  N  H  F  R  I  V  V  S  P  F  K  *  F  S  Y  F  L  L  N  E  K  P  R  F  S  A  H  T  L  P  I  I  I  V  V  V  G  N  K  P  H  F  F  A  H  T  K  L  C  N  H  G  P  G  *  I  G  C  L  L  </second_frame>
            <third_frame>   E  S  Y  E  V  C  D  T  P  N  F  T  I  Y  S  *  E  V  S  N  S  I  G  N  E  S  A  D  N  Q  T  K  I  C  K  G  Q  L  S  G  L  Q  H  Q  K  K  E  V  S  *  K  *  H  T  *  Q  Y  L  *  H  L  S  A  T  I  S  V  D  L  *  N  S  P  P  H  I  N  H  L  L  D  S  N  E  R  V  E  N  M  H  E  N  D  P  L  Y  A  H  G  L  I  K  T  S  N  K  L  P  H  *  D  P  T  G  A  M  P  L  V  L  A  A  A  V  A  A  A  A  A  A  A  A  A  A  A  A  A  A  A  G  F  D  G  G  D  G  L  G  C  D  G  L  S  S  E  T  N  *  G  F  F  C  C  V  C  L  E  L  T  W  V  S  R  A  L  I  *  F  P  V  I  V  S  C  S  S  N  A  L  A  R  A  *  S  S  L  I  W  V  V  R  I  I  F  A  L  L  *  A  L  S  S  N  S  L  T  S  F  S  M  R  S  L  V  S  V  L  I  L  F  P  L  S  S  *  L  W  V  T  S  P  T  S  L  L  I  P  N  F  V  T  M  A  L  A  R  L  V  A  C  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43780" stop="43586"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLATSYHTKILQEQCLWFWLRQWPQLQRLQLLLLLQQPDLMEEMDWAVMDSPLRLIEVSFAVFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="66680" PGL_stop="74045"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66680" e_stop="66707"/>
            <exon e_start="66901" e_stop="66965"/>
            <exon e_start="68224" e_stop="68342"/>
            <exon e_start="69173" e_stop="69255"/>
            <exon e_start="69903" e_stop="70024"/>
            <exon e_start="71119" e_stop="71283"/>
            <exon e_start="73153" e_stop="73246"/>
            <exon e_start="73452" e_stop="74000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66680" e_stop="66707" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.935">
            <gDNA_intron_boundary i_start="66708" i_stop="66900" i_length="193"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66901" e_stop="66965" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.968">
            <gDNA_intron_boundary i_start="66966" i_stop="68223" i_length="1258"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68224" e_stop="68342" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.828" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68343" i_stop="69172" i_length="830"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69173" e_stop="69255" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69256" i_stop="69902" i_length="647"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69903" e_stop="70024" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="70025" i_stop="71118" i_length="1094"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71119" e_stop="71283" e_length="165"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71284" i_stop="73152" i_length="1869"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73153" e_stop="73246" e_length="94"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73247" i_stop="73451" i_length="205"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="73452" e_stop="74000" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66680" stop="66707"/>
              <exon start="66901" stop="66965"/>
              <exon start="68224" stop="68342"/>
              <exon start="69173" stop="69255"/>
              <exon start="69903" stop="70024"/>
              <exon start="71119" stop="71283"/>
              <exon start="73153" stop="73246"/>
              <exon start="73452" stop="73578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66680" stop="66707"/>
              <exon start="66901" stop="66965"/>
              <exon start="68224" stop="68342"/>
              <exon start="69173" stop="69255"/>
              <exon start="69903" stop="70024"/>
              <exon start="71119" stop="71283"/>
              <exon start="73153" stop="73246"/>
              <exon start="73452" stop="73577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71119" stop="71283"/>
              <exon start="73153" stop="73246"/>
              <exon start="73452" stop="73865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71119" stop="71283"/>
              <exon start="73153" stop="73246"/>
              <exon start="73452" stop="73571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71202" stop="71283"/>
              <exon start="73153" stop="73246"/>
              <exon start="73452" stop="74000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73456" stop="73901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATGAAGAGAGGATATATAAATGATGT : GAAACTTGAAGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAG : AAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAG : GATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGG : TGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAG : GAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAG : GAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAG : GGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCATCAAGATGAGTTGTCTTCCGTTGTGGTTGCTTTTGTGAAAGCAGGTTTAGGTGGAAGAAACTACATGGCTATGCCATCTGAGTCATGCAAAAGAACAAGTGGATGTATACATTCACGATTTTGATCCAGTATCCTTATGTTGTGTACAAGTTAATTATTTACCAACAACAAGAAACAGACACCAAAACAGCTTGTAACTTTGTAAATGAGCATAGCCACTGTTGTAATCTCACCGCTAATTAAATGAAGTATTTGAAGGACCAAATACCAAAACTCGGGGCATCACATGAAATTTATAGGTACTGCAGAAGATGGGGAAGAAAACAAGAAAAGGATATTAATGTAGTAATGGCGGTTGTTTTCTTTCCTATTTTTGCTGGAAAGAACCATCATTCAACATTCTTTGAACTTCTGTACAATTTT</gDNA_template>
            <first_frame> I  *  R  E  D  I  *  M  M   : *  N  L  K  R  P  K  A  L  F  R  W  L  R  P  L  Q  S  L  I  C  K  :  K  F  G  V  S  V  *  Q  Y  I  T  V  M  V  R  N  W  W  A  C  Y  M  K  Q  I  P  W  S  L  *  L  S  A  T  V  S  N  H  R  R :   I  G  F  P  W  *  I  L  L  L  L  M  R  K  K  E  S  V  P  S  A  L  T  L  Q  E  M   : V  K  A  K  V  P  F  S  M  V  T  T  A  E  K  L  M  I  F  V  P  *  S  S  T  S  I  R  R  S  V  S  *  Q  Q  *  L  V  I  A  K  :  E  E  M  L  Y  S  C  M  L  R  T  T  R  M  Y  K  L  S  S  I  F  L  G  A  S  I  L  R  E  G  *  S  I  A  W  A  E  T  S  K  R  R  *  S  I  T  V  L  L  M  L  E  I  E  K  :  E  G  S  S  I  V  S  L  R  K  V  *  W  T  V  *  Q  L  I  L  V  D  H  V  K  V  S  P  I  T  A   : G  Y  *  R  S  M  V  Q  W  M  K  W  C  Q  L  K  M  L  W  N  L  P  R  M  C  Q  I  I  N  Y  K  L  L  K  E  L  I  M  N  S  L  C  I  K  M  S  C  L  P  L  W  L  L  L  *  K  Q  V  *  V  E  E  T  T  W  L  C  H  L  S  H  A  K  E  Q  V  D  V  Y  I  H  D  F  D  P  V  S  L  C  C  V  Q  V  N  Y  L  P  T  T  R  N  R  H  Q  N  S  L  *  L  C  K  *  A  *  P  L  L  *  S  H  R  *  L  N  E  V  F  E  G  P  N  T  K  T  R  G  I  T  *  N  L  *  V  L  Q  K  M  G  K  K  T  R  K  G  Y  *  C  S  N  G  G  C  F  L  S  Y  F  C  W  K  E  P  S  F  N  I  L  *  T  S  V  Q  F  </first_frame>
            <second_frame>  Y  E  E  R  I  Y  K  *  C  :  E  T  *  R  D  Q  K  L  C  S  D  G  S  V  P  F  N  P  *  S  A  R :   N  S  A  *  V  C  D  S  T  *  Q  S  W  *  E  T  G  G  R  A  T  *  N  K  F  P  G  A  C  N  Y  L  P  R  F  Q  I  I  E   : G  S  D  S  H  G  E  S  C  C  C  L  *  E  R  R  N  Q  C  L  P  L  *  L  C  R  K  W  :  *  K  R  R  F  L  S  V  W  *  L  P  Q  R  S  *  *  S  S  C  H  S  R  A  L  P  *  G  G  A  F  H  S  S  N  S  W  S  *  Q  R :   R  K  C  C  T  L  V  C  F  E  L  Q  G  C  T  N  C  H  Q  Y  F  W  A  L  Q  S  *  E  R  D  R  A  S  L  G  Q  R  L  Q  R  E  D  K  A  *  R  F  Y  *  C  *  K  *  K  R :   K  V  Q  V  S  C  H  *  G  K  F  D  G  P  S  N  N  *  Y  S  W  I  M  S  K  Y  H  Q  *  L  Q  :  G  I  D  G  P  W  F  N  G  *  N  G  A  S  *  R  C  Y  G  I  C  Q  E  C  V  K  S  *  I  T  N  Y  *  R  S  *  S  *  I  H  F  A  S  R  *  V  V  F  R  C  G  C  F  C  E  S  R  F  R  W  K  K  L  H  G  Y  A  I  *  V  M  Q  K  N  K  W  M  Y  T  F  T  I  L  I  Q  Y  P  Y  V  V  Y  K  L  I  I  Y  Q  Q  Q  E  T  D  T  K  T  A  C  N  F  V  N  E  H  S  H  C  C  N  L  T  A  N  *  M  K  Y  L  K  D  Q  I  P  K  L  G  A  S  H  E  I  Y  R  Y  C  R  R  W  G  R  K  Q  E  K  D  I  N  V  V  M  A  V  V  F  F  P  I  F  A  G  K  N  H  H  S  T  F  F  E  L  L  Y  N  F </second_frame>
            <third_frame>   M  K  R  G  Y  I  N  D  V :   K  L  E  E  T  K  S  F  V  Q  M  A  P  S  P  S  I  P  N  L  Q   : E  I  R  R  K  C  V  T  V  H  N  S  H  G  E  K  L  V  G  V  L  H  E  T  N  S  L  E  L  V  I  I  C  H  G  F  K  S  S  K  :  D  R  I  P  M  V  N  L  A  A  A  Y  E  K  E  G  I  S  A  F  R  F  D  F  A  G  N  G :   E  S  E  G  S  F  Q  Y  G  N  Y  R  R  E  A  D  D  L  R  A  I  V  E  H  F  H  K  E  E  R  F  I  A  A  I  V  G  H  S  K   : G  G  N  V  V  L  L  Y  A  S  N  Y  K  D  V  Q  T  V  I  N  I  S  G  R  F  N  L  E  R  G  I  E  H  R  L  G  R  D  F  K  E  K  I  K  H  N  G  F  I  D  V  R  N  R  K   : G  R  F  K  Y  R  V  T  E  E  S  L  M  D  R  L  T  T  D  T  R  G  S  C  Q  S  I  T  N  N  C  R :   V  L  T  V  H  G  S  M  D  E  M  V  P  V  E  D  A  M  E  F  A  K  N  V  S  N  H  K  L  Q  I  I  E  G  A  D  H  E  F  T  L  H  Q  D  E  L  S  S  V  V  V  A  F  V  K  A  G  L  G  G  R  N  Y  M  A  M  P  S  E  S  C  K  R  T  S  G  C  I  H  S  R  F  *  S  S  I  L  M  L  C  T  S  *  L  F  T  N  N  K  K  Q  T  P  K  Q  L  V  T  L  *  M  S  I  A  T  V  V  I  S  P  L  I  K  *  S  I  *  R  T  K  Y  Q  N  S  G  H  H  M  K  F  I  G  T  A  E  D  G  E  E  N  K  K  R  I  L  M  *  *  W  R  L  F  S  F  L  F  L  L  E  R  T  I  I  Q  H  S  L  N  F  C  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66682" stop="66707"/>
                    <exon start="66901" stop="66965"/>
                    <exon start="68224" stop="68342"/>
                    <exon start="69173" stop="69255"/>
                    <exon start="69903" stop="70024"/>
                    <exon start="71119" stop="71283"/>
                    <exon start="73153" stop="73246"/>
                    <exon start="73452" stop="73701"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKRGYINDVKLEETKSFVQMAPSPSIPNLQEIRRKCVTVHNSHGEKLVGVLHETNSLELVIICHGFKSSKDRIPMVNLAAAYEKEGISAFRFDFAGNGESEGSFQYGNYRREADDLRAIVEHFHKEERFIAAIVGHSKGGNVVLLYASNYKDVQTVINISGRFNLERGIEHRLGRDFKEKIKHNGFIDVRNRKGRFKYRVTEESLMDRLTTDTRGSCQSITNNCRVLTVHGSMDEMVPVEDAMEFAKNVSNHKLQIIEGADHEFTLHQDELSSVVVAFVKAGLGGRNYMAMPSESCKRTSGCIHSRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66886" e_stop="66965"/>
            <exon e_start="68224" e_stop="68342"/>
            <exon e_start="69173" e_stop="69255"/>
            <exon e_start="69903" e_stop="70024"/>
            <exon e_start="71119" e_stop="71283"/>
            <exon e_start="73153" e_stop="73246"/>
            <exon e_start="73452" e_stop="74000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.989" e_score="0.988"/>
          <exon-intron don_prob="0.000" acc_prob="0.960" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66886" e_stop="66965" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.968">
            <gDNA_intron_boundary i_start="66966" i_stop="68223" i_length="1258"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68224" e_stop="68342" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.828" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68343" i_stop="69172" i_length="830"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="69173" e_stop="69255" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69256" i_stop="69902" i_length="647"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="69903" e_stop="70024" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="70025" i_stop="71118" i_length="1094"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71119" e_stop="71283" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71284" i_stop="73152" i_length="1869"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73153" e_stop="73246" e_length="94"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73247" i_stop="73451" i_length="205"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73452" e_stop="74000" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66886" stop="66965"/>
              <exon start="68224" stop="68342"/>
              <exon start="69173" stop="69255"/>
              <exon start="69903" stop="70024"/>
              <exon start="71119" stop="71279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71119" stop="71283"/>
              <exon start="73153" stop="73246"/>
              <exon start="73452" stop="73865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71119" stop="71283"/>
              <exon start="73153" stop="73246"/>
              <exon start="73452" stop="73571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71202" stop="71283"/>
              <exon start="73153" stop="73246"/>
              <exon start="73452" stop="74000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73456" stop="73901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTCCTTACTAGGAAACTTGAAGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAG : AAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAG : GATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGG : TGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAG : GAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAG : GAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAG : GGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCATCAAGATGAGTTGTCTTCCGTTGTGGTTGCTTTTGTGAAAGCAGGTTTAGGTGGAAGAAACTACATGGCTATGCCATCTGAGTCATGCAAAAGAACAAGTGGATGTATACATTCACGATTTTGATCCAGTATCCTTATGTTGTGTACAAGTTAATTATTTACCAACAACAAGAAACAGACACCAAAACAGCTTGTAACTTTGTAAATGAGCATAGCCACTGTTGTAATCTCACCGCTAATTAAATGAAGTATTTGAAGGACCAAATACCAAAACTCGGGGCATCACATGAAATTTATAGGTACTGCAGAAGATGGGGAAGAAAACAAGAAAAGGATATTAATGTAGTAATGGCGGTTGTTTTCTTTCCTATTTTTGCTGGAAAGAACCATCATTCAACATTCTTTGAACTTCTGTACAATTTT</gDNA_template>
            <first_frame> S  L  P  Y  *  E  T  *  R  D  Q  K  L  C  S  D  G  S  V  P  F  N  P  *  S  A  R :   N  S  A  *  V  C  D  S  T  *  Q  S  W  *  E  T  G  G  R  A  T  *  N  K  F  P  G  A  C  N  Y  L  P  R  F  Q  I  I  E   : G  S  D  S  H  G  E  S  C  C  C  L  *  E  R  R  N  Q  C  L  P  L  *  L  C  R  K  W  :  *  K  R  R  F  L  S  V  W  *  L  P  Q  R  S  *  *  S  S  C  H  S  R  A  L  P  *  G  G  A  F  H  S  S  N  S  W  S  *  Q  R :   R  K  C  C  T  L  V  C  F  E  L  Q  G  C  T  N  C  H  Q  Y  F  W  A  L  Q  S  *  E  R  D  R  A  S  L  G  Q  R  L  Q  R  E  D  K  A  *  R  F  Y  *  C  *  K  *  K  R :   K  V  Q  V  S  C  H  *  G  K  F  D  G  P  S  N  N  *  Y  S  W  I  M  S  K  Y  H  Q  *  L  Q  :  G  I  D  G  P  W  F  N  G  *  N  G  A  S  *  R  C  Y  G  I  C  Q  E  C  V  K  S  *  I  T  N  Y  *  R  S  *  S  *  I  H  F  A  S  R  *  V  V  F  R  C  G  C  F  C  E  S  R  F  R  W  K  K  L  H  G  Y  A  I  *  V  M  Q  K  N  K  W  M  Y  T  F  T  I  L  I  Q  Y  P  Y  V  V  Y  K  L  I  I  Y  Q  Q  Q  E  T  D  T  K  T  A  C  N  F  V  N  E  H  S  H  C  C  N  L  T  A  N  *  M  K  Y  L  K  D  Q  I  P  K  L  G  A  S  H  E  I  Y  R  Y  C  R  R  W  G  R  K  Q  E  K  D  I  N  V  V  M  A  V  V  F  F  P  I  F  A  G  K  N  H  H  S  T  F  F  E  L  L  Y  N  F </first_frame>
            <second_frame>  L  F  L  T  R  K  L  E  E  T  K  S  F  V  Q  M  A  P  S  P  S  I  P  N  L  Q   : E  I  R  R  K  C  V  T  V  H  N  S  H  G  E  K  L  V  G  V  L  H  E  T  N  S  L  E  L  V  I  I  C  H  G  F  K  S  S  K  :  D  R  I  P  M  V  N  L  A  A  A  Y  E  K  E  G  I  S  A  F  R  F  D  F  A  G  N  G :   E  S  E  G  S  F  Q  Y  G  N  Y  R  R  E  A  D  D  L  R  A  I  V  E  H  F  H  K  E  E  R  F  I  A  A  I  V  G  H  S  K   : G  G  N  V  V  L  L  Y  A  S  N  Y  K  D  V  Q  T  V  I  N  I  S  G  R  F  N  L  E  R  G  I  E  H  R  L  G  R  D  F  K  E  K  I  K  H  N  G  F  I  D  V  R  N  R  K   : G  R  F  K  Y  R  V  T  E  E  S  L  M  D  R  L  T  T  D  T  R  G  S  C  Q  S  I  T  N  N  C  R :   V  L  T  V  H  G  S  M  D  E  M  V  P  V  E  D  A  M  E  F  A  K  N  V  S  N  H  K  L  Q  I  I  E  G  A  D  H  E  F  T  L  H  Q  D  E  L  S  S  V  V  V  A  F  V  K  A  G  L  G  G  R  N  Y  M  A  M  P  S  E  S  C  K  R  T  S  G  C  I  H  S  R  F  *  S  S  I  L  M  L  C  T  S  *  L  F  T  N  N  K  K  Q  T  P  K  Q  L  V  T  L  *  M  S  I  A  T  V  V  I  S  P  L  I  K  *  S  I  *  R  T  K  Y  Q  N  S  G  H  H  M  K  F  I  G  T  A  E  D  G  E  E  N  K  K  R  I  L  M  *  *  W  R  L  F  S  F  L  F  L  L  E  R  T  I  I  Q  H  S  L  N  F  C  T  I   </second_frame>
            <third_frame>   S  S  L  L  G  N  L  K  R  P  K  A  L  F  R  W  L  R  P  L  Q  S  L  I  C  K  :  K  F  G  V  S  V  *  Q  Y  I  T  V  M  V  R  N  W  W  A  C  Y  M  K  Q  I  P  W  S  L  *  L  S  A  T  V  S  N  H  R  R :   I  G  F  P  W  *  I  L  L  L  L  M  R  K  K  E  S  V  P  S  A  L  T  L  Q  E  M   : V  K  A  K  V  P  F  S  M  V  T  T  A  E  K  L  M  I  F  V  P  *  S  S  T  S  I  R  R  S  V  S  *  Q  Q  *  L  V  I  A  K  :  E  E  M  L  Y  S  C  M  L  R  T  T  R  M  Y  K  L  S  S  I  F  L  G  A  S  I  L  R  E  G  *  S  I  A  W  A  E  T  S  K  R  R  *  S  I  T  V  L  L  M  L  E  I  E  K  :  E  G  S  S  I  V  S  L  R  K  V  *  W  T  V  *  Q  L  I  L  V  D  H  V  K  V  S  P  I  T  A   : G  Y  *  R  S  M  V  Q  W  M  K  W  C  Q  L  K  M  L  W  N  L  P  R  M  C  Q  I  I  N  Y  K  L  L  K  E  L  I  M  N  S  L  C  I  K  M  S  C  L  P  L  W  L  L  L  *  K  Q  V  *  V  E  E  T  T  W  L  C  H  L  S  H  A  K  E  Q  V  D  V  Y  I  H  D  F  D  P  V  S  L  C  C  V  Q  V  N  Y  L  P  T  T  R  N  R  H  Q  N  S  L  *  L  C  K  *  A  *  P  L  L  *  S  H  R  *  L  N  E  V  F  E  G  P  N  T  K  T  R  G  I  T  *  N  L  *  V  L  Q  K  M  G  K  K  T  R  K  G  Y  *  C  S  N  G  G  C  F  L  S  Y  F  C  W  K  E  P  S  F  N  I  L  *  T  S  V  Q  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66887" stop="66965"/>
                    <exon start="68224" stop="68342"/>
                    <exon start="69173" stop="69255"/>
                    <exon start="69903" stop="70024"/>
                    <exon start="71119" stop="71283"/>
                    <exon start="73153" stop="73246"/>
                    <exon start="73452" stop="73701"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFLTRKLEETKSFVQMAPSPSIPNLQEIRRKCVTVHNSHGEKLVGVLHETNSLELVIICHGFKSSKDRIPMVNLAAAYEKEGISAFRFDFAGNGESEGSFQYGNYRREADDLRAIVEHFHKEERFIAAIVGHSKGGNVVLLYASNYKDVQTVINISGRFNLERGIEHRLGRDFKEKIKHNGFIDVRNRKGRFKYRVTEESLMDRLTTDTRGSCQSITNNCRVLTVHGSMDEMVPVEDAMEFAKNVSNHKLQIIEGADHEFTLHQDELSSVVVAFVKAGLGGRNYMAMPSESCKRTSGCIHSRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="66910" e_stop="66965"/>
            <exon e_start="68224" e_stop="68342"/>
            <exon e_start="69173" e_stop="69255"/>
            <exon e_start="69903" e_stop="71065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66910" e_stop="66965" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.968">
            <gDNA_intron_boundary i_start="66966" i_stop="68223" i_length="1258"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68224" e_stop="68342" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.828" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68343" i_stop="69172" i_length="830"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69173" e_stop="69255" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69256" i_stop="69902" i_length="647"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69903" e_stop="71065" e_length="1163"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66910" stop="66965"/>
              <exon start="68224" stop="68342"/>
              <exon start="69173" stop="69255"/>
              <exon start="69903" stop="70301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66910" stop="66965"/>
              <exon start="68224" stop="68342"/>
              <exon start="69173" stop="69255"/>
              <exon start="69903" stop="70280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70270" stop="70692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70647" stop="71065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAG : AAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAG : GATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGG : TGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAGGTTTAGCCTTTGAAAGCTAACTTATGTCTGATCTTGGGAAGATACGCCGTGTTTCTCTTTTCCTTTCCCCATTCCTAGTTCTCTTGCTAGGGGTGTGAATGGTGGTGTTTGGAGGATTACAGTACCACTATACTGGAACAGTACATGCAGTCTAACTGATGTTTCGACCAGTAGCAATGCCACTTTTCGCTGCTGTTTGATTCGAGTCATTGATAGATAGAAGCTTTCTTGTCATTACTGCTTATCATACTTGATGCGTTCACGTAGGAATTTTACATTTTGTCCTTGCAATTTATGTTAAATCTGCTGAGTAAGTTATGTTTGAGTGCATAAATGAATACCCTTTCTTTGTTAGTAGGTAAGTTTTTCTCATTAGGTCATCAATATTTTCCTGGATTGGGATTCGTAAATATGTTAATAGATTCTTGATCTGTATCTTCCATTTTTGGGTGTGTGTGTTATGTCTTTGTTGGGGGTTCTTGTTTTGGTTCAGTACTTCAGGGATTATTAACAGTACTTTTTGCAAGAATATGTGTGGGTTGAAAATTGTGTGTTCATACTCGAACTTTTGAGTGTTCTTATTTCATTATGAGCTTTTTAAACATTGAAGAAGGTTTTCCTTTTCAAGTAAATAGTTCTTTGTTAAAATCAAATTATGATTGCTGATTTAGCAATTTTTGGTTTACTGTTATGTTCATTTTAAATTTAACTTTAAAAGGTAGCAGTAAATGTTGACAACCTTCATGTTTTACCCCAGCATTATATGGTCCTGCTAACTGCTGATGTTTATGATGGTATTTTCTCTTGTCCATATTCTACTTAATTTCTTATCAGTAAGAGTTGCACAAGTACTTTGAATTGTCATGATAGTGATGTATTGATCTCACAGGAGTCGGGACACAGTCAAATTTACAAGGAAAGATAGTATCTTCTTGTGCTATAGTTTGCATTGTATCCTCTCTTCACATAATCAACACATACTGCACCTCAAATTAAGTTATAGTAACTATCTCCAGCTTATTTTTCTGCATGCATATCGTA</gDNA_template>
            <first_frame> R  D  Q  K  L  C  S  D  G  S  V  P  F  N  P  *  S  A  R :   N  S  A  *  V  C  D  S  T  *  Q  S  W  *  E  T  G  G  R  A  T  *  N  K  F  P  G  A  C  N  Y  L  P  R  F  Q  I  I  E   : G  S  D  S  H  G  E  S  C  C  C  L  *  E  R  R  N  Q  C  L  P  L  *  L  C  R  K  W  :  *  K  R  R  F  L  S  V  W  *  L  P  Q  R  S  *  *  S  S  C  H  S  R  A  L  P  *  G  G  A  F  H  S  S  N  S  W  S  *  Q  R  F  S  L  *  K  L  T  Y  V  *  S  W  E  D  T  P  C  F  S  F  P  F  P  I  P  S  S  L  A  R  G  V  N  G  G  V  W  R  I  T  V  P  L  Y  W  N  S  T  C  S  L  T  D  V  S  T  S  S  N  A  T  F  R  C  C  L  I  R  V  I  D  R  *  K  L  S  C  H  Y  C  L  S  Y  L  M  R  S  R  R  N  F  T  F  C  P  C  N  L  C  *  I  C  *  V  S  Y  V  *  V  H  K  *  I  P  F  L  C  *  *  V  S  F  S  H  *  V  I  N  I  F  L  D  W  D  S  *  I  C  *  *  I  L  D  L  Y  L  P  F  L  G  V  C  V  M  S  L  L  G  V  L  V  L  V  Q  Y  F  R  D  Y  *  Q  Y  F  L  Q  E  Y  V  W  V  E  N  C  V  F  I  L  E  L  L  S  V  L  I  S  L  *  A  F  *  T  L  K  K  V  F  L  F  K  *  I  V  L  C  *  N  Q  I  M  I  A  D  L  A  I  F  G  L  L  L  C  S  F  *  I  *  L  *  K  V  A  V  N  V  D  N  L  H  V  L  P  Q  H  Y  M  V  L  L  T  A  D  V  Y  D  G  I  F  S  C  P  Y  S  T  *  F  L  I  S  K  S  C  T  S  T  L  N  C  H  D  S  D  V  L  I  S  Q  E  S  G  H  S  Q  I  Y  K  E  R  *  Y  L  L  V  L  *  F  A  L  Y  P  L  F  T  *  S  T  H  T  A  P  Q  I  K  L  *  *  L  S  P  A  Y  F  S  A  C  I  S   </first_frame>
            <second_frame>  E  T  K  S  F  V  Q  M  A  P  S  P  S  I  P  N  L  Q   : E  I  R  R  K  C  V  T  V  H  N  S  H  G  E  K  L  V  G  V  L  H  E  T  N  S  L  E  L  V  I  I  C  H  G  F  K  S  S  K  :  D  R  I  P  M  V  N  L  A  A  A  Y  E  K  E  G  I  S  A  F  R  F  D  F  A  G  N  G :   E  S  E  G  S  F  Q  Y  G  N  Y  R  R  E  A  D  D  L  R  A  I  V  E  H  F  H  K  E  E  R  F  I  A  A  I  V  G  H  S  K  G  L  A  F  E  S  *  L  M  S  D  L  G  K  I  R  R  V  S  L  F  L  S  P  F  L  V  L  L  L  G  V  *  M  V  V  F  G  G  L  Q  Y  H  Y  T  G  T  V  H  A  V  *  L  M  F  R  P  V  A  M  P  L  F  A  A  V  *  F  E  S  L  I  D  R  S  F  L  V  I  T  A  Y  H  T  *  C  V  H  V  G  I  L  H  F  V  L  A  I  Y  V  K  S  A  E  *  V  M  F  E  C  I  N  E  Y  P  F  F  V  S  R  *  V  F  L  I  R  S  S  I  F  S  W  I  G  I  R  K  Y  V  N  R  F  L  I  C  I  F  H  F  W  V  C  V  L  C  L  C  W  G  F  L  F  W  F  S  T  S  G  I  I  N  S  T  F  C  K  N  M  C  G  L  K  I  V  C  S  Y  S  N  F  *  V  F  L  F  H  Y  E  L  F  K  H  *  R  R  F  S  F  S  S  K  *  F  F  V  K  I  K  L  *  L  L  I  *  Q  F  L  V  Y  C  Y  V  H  F  K  F  N  F  K  R  *  Q  *  M  L  T  T  F  M  F  Y  P  S  I  I  W  S  C  *  L  L  M  F  M  M  V  F  S  L  V  H  I  L  L  N  F  L  S  V  R  V  A  Q  V  L  *  I  V  M  I  V  M  Y  *  S  H  R  S  R  D  T  V  K  F  T  R  K  D  S  I  F  L  C  Y  S  L  H  C  I  L  S  S  H  N  Q  H  I  L  H  L  K  L  S  Y  S  N  Y  L  Q  L  I  F  L  H  A  Y  R  </second_frame>
            <third_frame>   R  P  K  A  L  F  R  W  L  R  P  L  Q  S  L  I  C  K  :  K  F  G  V  S  V  *  Q  Y  I  T  V  M  V  R  N  W  W  A  C  Y  M  K  Q  I  P  W  S  L  *  L  S  A  T  V  S  N  H  R  R :   I  G  F  P  W  *  I  L  L  L  L  M  R  K  K  E  S  V  P  S  A  L  T  L  Q  E  M   : V  K  A  K  V  P  F  S  M  V  T  T  A  E  K  L  M  I  F  V  P  *  S  S  T  S  I  R  R  S  V  S  *  Q  Q  *  L  V  I  A  K  V  *  P  L  K  A  N  L  C  L  I  L  G  R  Y  A  V  F  L  F  S  F  P  H  S  *  F  S  C  *  G  C  E  W  W  C  L  E  D  Y  S  T  T  I  L  E  Q  Y  M  Q  S  N  *  C  F  D  Q  *  Q  C  H  F  S  L  L  F  D  S  S  H  *  *  I  E  A  F  L  S  L  L  L  I  I  L  D  A  F  T  *  E  F  Y  I  L  S  L  Q  F  M  L  N  L  L  S  K  L  C  L  S  A  *  M  N  T  L  S  L  L  V  G  K  F  F  S  L  G  H  Q  Y  F  P  G  L  G  F  V  N  M  L  I  D  S  *  S  V  S  S  I  F  G  C  V  C  Y  V  F  V  G  G  S  C  F  G  S  V  L  Q  G  L  L  T  V  L  F  A  R  I  C  V  G  *  K  L  C  V  H  T  R  T  F  E  C  S  Y  F  I  M  S  F  L  N  I  E  E  G  F  P  F  Q  V  N  S  S  L  L  K  S  N  Y  D  C  *  F  S  N  F  W  F  T  V  M  F  I  L  N  L  T  L  K  G  S  S  K  C  *  Q  P  S  C  F  T  P  A  L  Y  G  P  A  N  C  *  C  L  *  W  Y  F  L  L  S  I  F  Y  L  I  S  Y  Q  *  E  L  H  K  Y  F  E  L  S  *  *  *  C  I  D  L  T  G  V  G  T  Q  S  N  L  Q  G  K  I  V  S  S  C  A  I  V  C  I  V  S  S  L  H  I  I  N  T  Y  C  T  S  N  *  V  I  V  T  I  S  S  L  F  F  C  M  H  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66911" stop="66965"/>
                    <exon start="68224" stop="68342"/>
                    <exon start="69173" stop="69255"/>
                    <exon start="69903" stop="70044"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETKSFVQMAPSPSIPNLQEIRRKCVTVHNSHGEKLVGVLHETNSLELVIICHGFKSSKDRIPMVNLAAAYEKEGISAFRFDFAGNGESEGSFQYGNYRREADDLRAIVEHFHKEERFIAAIVGHSKGLAFES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70387" stop="70596"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLIRSSIFSWIGIRKYVNRFLICIFHFWVCVLCLCWGFLFWFSTSGIINSTFCKNMCGLKIVCSYSNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="73149" e_stop="73246"/>
            <exon e_start="73452" e_stop="74045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="0.980"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="73149" e_stop="73246" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73247" i_stop="73451" i_length="205"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="73452" e_stop="74045" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73149" stop="73246"/>
              <exon start="73452" stop="74045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73456" stop="73901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGGAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAG : GGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCATCAAGATGAGTTGTCTTCCGTTGTGGTTGCTTTTGTGAAAGCAGGTTTAGGTGGAAGAAACTACATGGCTATGCCATCTGAGTCATGCAAAAGAACAAGTGGATGTATACATTCACGATTTTGATCCAGTATCCTTATGTTGTGTACAAGTTAATTATTTACCAACAACAAGAAACAGACACCAAAACAGCTTGTAACTTTGTAAATGAGCATAGCCACTGTTGTAATCTCACCGCTAATTAAATGAAGTATTTGAAGGACCAAATACCAAAACTCGGGGCATCACATGAAATTTATAGGTACTGCAGAAGATGGGGAAGAAAACAAGAAAAGGATATTAATGTAGTAATGGCGGTTGTTTTCTTTCCTATTTTTGCTGGAAAGAACCATCATTCAACATTCTTTGAACTTCTGTACAATTTTATATCAAACATTGATTTATACAAGTAGTGAAATGTTGAAATTGCT</gDNA_template>
            <first_frame> A  G  R  F  K  Y  R  V  T  E  E  S  L  M  D  R  L  T  T  D  T  R  G  S  C  Q  S  I  T  N  N  C  R :   V  L  T  V  H  G  S  M  D  E  M  V  P  V  E  D  A  M  E  F  A  K  N  V  S  N  H  K  L  Q  I  I  E  G  A  D  H  E  F  T  L  H  Q  D  E  L  S  S  V  V  V  A  F  V  K  A  G  L  G  G  R  N  Y  M  A  M  P  S  E  S  C  K  R  T  S  G  C  I  H  S  R  F  *  S  S  I  L  M  L  C  T  S  *  L  F  T  N  N  K  K  Q  T  P  K  Q  L  V  T  L  *  M  S  I  A  T  V  V  I  S  P  L  I  K  *  S  I  *  R  T  K  Y  Q  N  S  G  H  H  M  K  F  I  G  T  A  E  D  G  E  E  N  K  K  R  I  L  M  *  *  W  R  L  F  S  F  L  F  L  L  E  R  T  I  I  Q  H  S  L  N  F  C  T  I  L  Y  Q  T  L  I  Y  T  S  S  E  M  L  K  L   </first_frame>
            <second_frame>  Q  E  G  S  S  I  V  S  L  R  K  V  *  W  T  V  *  Q  L  I  L  V  D  H  V  K  V  S  P  I  T  A   : G  Y  *  R  S  M  V  Q  W  M  K  W  C  Q  L  K  M  L  W  N  L  P  R  M  C  Q  I  I  N  Y  K  L  L  K  E  L  I  M  N  S  L  C  I  K  M  S  C  L  P  L  W  L  L  L  *  K  Q  V  *  V  E  E  T  T  W  L  C  H  L  S  H  A  K  E  Q  V  D  V  Y  I  H  D  F  D  P  V  S  L  C  C  V  Q  V  N  Y  L  P  T  T  R  N  R  H  Q  N  S  L  *  L  C  K  *  A  *  P  L  L  *  S  H  R  *  L  N  E  V  F  E  G  P  N  T  K  T  R  G  I  T  *  N  L  *  V  L  Q  K  M  G  K  K  T  R  K  G  Y  *  C  S  N  G  G  C  F  L  S  Y  F  C  W  K  E  P  S  F  N  I  L  *  T  S  V  Q  F  Y  I  K  H  *  F  I  Q  V  V  K  C  *  N  C  </second_frame>
            <third_frame>   R  K  V  Q  V  S  C  H  *  G  K  F  D  G  P  S  N  N  *  Y  S  W  I  M  S  K  Y  H  Q  *  L  Q  :  G  I  D  G  P  W  F  N  G  *  N  G  A  S  *  R  C  Y  G  I  C  Q  E  C  V  K  S  *  I  T  N  Y  *  R  S  *  S  *  I  H  F  A  S  R  *  V  V  F  R  C  G  C  F  C  E  S  R  F  R  W  K  K  L  H  G  Y  A  I  *  V  M  Q  K  N  K  W  M  Y  T  F  T  I  L  I  Q  Y  P  Y  V  V  Y  K  L  I  I  Y  Q  Q  Q  E  T  D  T  K  T  A  C  N  F  V  N  E  H  S  H  C  C  N  L  T  A  N  *  M  K  Y  L  K  D  Q  I  P  K  L  G  A  S  H  E  I  Y  R  Y  C  R  R  W  G  R  K  Q  E  K  D  I  N  V  V  M  A  V  V  F  F  P  I  F  A  G  K  N  H  H  S  T  F  F  E  L  L  Y  N  F  I  S  N  I  D  L  Y  K  *  *  N  V  E  I  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73149" stop="73246"/>
                    <exon start="73452" stop="73701"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGRFKYRVTEESLMDRLTTDTRGSCQSITNNCRVLTVHGSMDEMVPVEDAMEFAKNVSNHKLQIIEGADHEFTLHQDELSSVVVAFVKAGLGGRNYMAMPSESCKRTSGCIHSRF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73821" stop="74027"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKYLKDQIPKLGASHEIYRYCRRWGRKQEKDINVVMAVVFFPIFAGKNHHSTFFELLYNFISNIDLYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="78477" PGL_stop="74198"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78471" e_stop="78426"/>
            <exon e_start="76810" e_stop="75731"/>
            <exon e_start="74893" e_stop="74198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78471" e_stop="78426" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.968">
            <gDNA_intron_boundary i_start="78425" i_stop="76811" i_length="1615"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="76810" e_stop="75731" e_length="1080"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75730" i_stop="74894" i_length="837"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74893" e_stop="74198" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78471" stop="78426"/>
              <exon start="76810" stop="76574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78452" stop="78426"/>
              <exon start="76810" stop="76108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78448" stop="78426"/>
              <exon start="76810" stop="76022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76810" stop="76060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76810" stop="76163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76810" stop="76182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76810" stop="76194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76810" stop="76350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76810" stop="76355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76809" stop="76154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76809" stop="76192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76809" stop="76596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76769" stop="75918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76725" stop="76282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76683" stop="75954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76653" stop="75855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76596" stop="76121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76596" stop="76136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76594" stop="76045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76417" stop="76001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76290" stop="75849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76169" stop="75743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75898" stop="75731"/>
              <exon start="74893" stop="74339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75862" stop="75731"/>
              <exon start="74893" stop="74290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611688" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75779" stop="75731"/>
              <exon start="74893" stop="74198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74715" stop="74198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283510" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74449" stop="74246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598223" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCACTCTCTTGTAAGGATTTTATGTCTAACAAGCATCACCAG : GTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACTCATAACGGAAGAACAGATACTCTTCCTTATCCCAAACAAGCAAGCTCCTTCTATCATTTGAGTAAAGTCCATGATTCCCACAACATAGCCTTCACTTGCAAGGCGTGGGGAATCAGAGCTACCGACCTGAATCAGGGAGTTGTATATGGGGTGAGGACTGATGAAACTGCAATACATGAGGATCTGGTTAACAGACTTGATTATGATGGTGTATTTGGAACTGCACTAAATCGTTTCTGTGTTCAGGCTGCTGTTGGACATCCACTAACGGTGTATGGTAAAGGAGGGCAG : ACCAGGGGATATTTGGATATCAGAGATACAGTTCAATGTGTTGAAATTGCAATTGCCAATCCAGCAAAACCAGGAGAGTTCCGGGTTTTCAACCAATTCACAGAGCAGTTTTCAGTAAATGAGCTTGCAGCCCTTGTCACCAAGGCAGGGCAAAAACTTGGCCTTGAGGTGAAGGCCATATCAGTGCCCAATCCAAGAGTAGAAGCAGAGGAACACTACTACAATGCCAAACATACTAAACTTATTGAGCTGGGACTACAACCTCACCTTCTTTCTGATTCTCTTCTCGACTCTCTATTGAACTTTGCTGTTCAATATAAGGATCGTGTCGACACAAAGCAGATAATGCCTAGTGTTTCCTGGAAAAAAATTGGCGCGAAGCCAAAGACTGTTGCAGCATAAATCACTTAGACAAGCTATAGAGACTTGAGACTGGGAGTTCTTGTATGTCATTTTTATATAGGAGCTATAGTATTTTACAATGCCTTGCACAATTTTATGTTGTAACTTTGGGAAGTATTTGTTGTATTCCGAAGCTTGTGAAGGTTGTGGATGTAGTTTTTGTTTGAGAAAATACTCGAGGTAGTCGTGACCTGTCTCAAGCCTGAAACTTGTGTGATTTACTTGTCAATTTAGTTTTGGCTACACAGAAGTGTTCCCGGATATCTTCCTCATTGGACAGATGAATTTTTGCTT</gDNA_template>
            <first_frame> F  L  T  L  L  *  G  F  Y  V  *  Q  A  S  P   : G  L  R  K  L  V  G  S  Y  R  G  G  Y  H  G  T  F  T  F  Y  Y  M  F  F  R  C  L  F  Q  Q  K  A  A  F  Q  V  N  *  P  M  L  Y  S  *  S  N  M  F  *  Y  G  N  F  F  L  T  L  E  A  K  F  A  K  Q  K  V  C  K  I  C  D  Q  S  F  S  C  F  H  E  P  R  S  Q  N  T  E  *  L  W  F  S  T  D  H  *  W  S  I  H  *  E  E  G  H  G  H  W  W  *  W  L  L  W  L  G  Y  C  S  P  P  I  Q  Q  G  I  *  S  C  H  C  *  Q  P  Y  P  S  I  I  *  R  P  A  W  S  R  F  S  N  T  H  L  I  Y  S  *  P  H  K  A  L  E  I  S  H  R  K  R  Y  S  T  V  C  W  *  Y  M  *  V  *  V  L  G  R  S  L  Q  I  L  *  T  *  C  C  S  P  F  W  R  A  E  V  C  P  L  F  Y  D  *  *  V  K  S  Y  L  Y  P  T  *  *  C  D  R  D  T  *  C  T  I  C  H  K  G  V  *  G  R  V  S  F  G  Q  T  R  D  H  G  G  I  W  N  P  *  Y  R  Y  *  R  R  L  Y  N  Y  Y  S  *  R  K  N  R  Y  S  S  L  S  Q  T  S  K  L  L  L  S  F  E  *  S  P  *  F  P  Q  H  S  L  H  L  Q  G  V  G  N  Q  S  Y  R  P  E  S  G  S  C  I  W  G  E  D  *  *  N  C  N  T  *  G  S  G  *  Q  T  *  L  *  W  C  I  W  N  C  T  K  S  F  L  C  S  G  C  C  W  T  S  T  N  G  V  W  *  R  R  A   : D  Q  G  I  F  G  Y  Q  R  Y  S  S  M  C  *  N  C  N  C  Q  S  S  K  T  R  R  V  P  G  F  Q  P  I  H  R  A  V  F  S  K  *  A  C  S  P  C  H  Q  G  R  A  K  T  W  P  *  G  E  G  H  I  S  A  Q  S  K  S  R  S  R  G  T  L  L  Q  C  Q  T  Y  *  T  Y  *  A  G  T  T  T  S  P  S  F  *  F  S  S  R  L  S  I  E  L  C  C  S  I  *  G  S  C  R  H  K  A  D  N  A  *  C  F  L  E  K  N  W  R  E  A  K  D  C  C  S  I  N  H  L  D  K  L  *  R  L  E  T  G  S  S  C  M  S  F  L  Y  R  S  Y  S  I  L  Q  C  L  A  Q  F  Y  V  V  T  L  G  S  I  C  C  I  P  K  L  V  K  V  V  D  V  V  F  V  *  E  N  T  R  G  S  R  D  L  S  Q  A  *  N  L  C  D  L  L  V  N  L  V  L  A  T  Q  K  C  S  R  I  S  S  S  L  D  R  *  I  F  A  </first_frame>
            <second_frame>  F  S  L  S  C  K  D  F  M  S  N  K  H  H  Q  :  V  *  E  N  W  *  A  H  I  E  A  A  I  M  A  H  L  L  S  T  T  C  S  L  D  V  S  S  S  K  K  L  H  F  K  S  I  N  Q  C  S  T  P  N  P  T  C  F  N  M  G  I  S  F  S  P  L  K  L  S  L  Q  S  K  R  S  A  K  Y  V  I  R  A  S  A  V  S  M  S  Q  E  A  R  T  Q  N  D  S  G  S  Q  Q  T  T  D  G  A  S  T  R  K  K  V  M  V  I  G  G  D  G  Y  C  G  W  A  T  A  L  H  L  S  N  K  G  Y  E  V  A  I  V  D  N  L  I  R  R  L  F  D  D  Q  L  G  L  D  S  L  T  P  I  S  S  I  H  N  R  I  R  R  W  K  S  L  T  G  K  D  I  Q  L  F  V  G  D  I  C  E  F  E  F  L  A  E  A  F  K  S  F  E  P  D  A  V  V  H  F  G  E  Q  R  S  A  P  Y  S  M  I  D  R  S  R  A  I  Y  T  Q  H  N  N  V  I  G  T  L  N  V  L  F  A  I  K  E  F  R  E  E  C  H  L  V  K  L  G  T  M  G  E  Y  G  T  P  N  I  D  I  E  E  G  Y  I  T  I  T  H  N  G  R  T  D  T  L  P  Y  P  K  Q  A  S  S  F  Y  H  L  S  K  V  H  D  S  H  N  I  A  F  T  C  K  A  W  G  I  R  A  T  D  L  N  Q  G  V  V  Y  G  V  R  T  D  E  T  A  I  H  E  D  L  V  N  R  L  D  Y  D  G  V  F  G  T  A  L  N  R  F  C  V  Q  A  A  V  G  H  P  L  T  V  Y  G  K  G  G  Q  :  T  R  G  Y  L  D  I  R  D  T  V  Q  C  V  E  I  A  I  A  N  P  A  K  P  G  E  F  R  V  F  N  Q  F  T  E  Q  F  S  V  N  E  L  A  A  L  V  T  K  A  G  Q  K  L  G  L  E  V  K  A  I  S  V  P  N  P  R  V  E  A  E  E  H  Y  Y  N  A  K  H  T  K  L  I  E  L  G  L  Q  P  H  L  L  S  D  S  L  L  D  S  L  L  N  F  A  V  Q  Y  K  D  R  V  D  T  K  Q  I  M  P  S  V  S  W  K  K  I  G  A  K  P  K  T  V  A  A  *  I  T  *  T  S  Y  R  D  L  R  L  G  V  L  V  C  H  F  Y  I  G  A  I  V  F  Y  N  A  L  H  N  F  M  L  *  L  W  E  V  F  V  V  F  R  S  L  *  R  L  W  M  *  F  L  F  E  K  I  L  E  V  V  V  T  C  L  K  P  E  T  C  V  I  Y  L  S  I  *  F  W  L  H  R  S  V  P  G  Y  L  P  H  W  T  D  E  F  L  L </second_frame>
            <third_frame>   S  H  S  L  V  R  I  L  C  L  T  S  I  T  R :   F  K  K  I  G  R  L  I  S  R  R  L  S  W  H  I  Y  F  L  L  H  V  L  *  M  S  L  P  A  K  S  C  I  S  S  Q  L  T  N  A  L  L  L  I  Q  H  V  L  I  W  E  F  L  S  H  P  *  S  *  V  C  K  A  K  G  L  Q  N  M  *  S  E  L  Q  L  F  P  *  A  K  K  P  E  H  R  M  T  L  V  L  N  R  P  L  M  E  H  P  L  G  R  R  S  W  S  L  V  V  M  A  I  V  A  G  L  L  L  S  T  Y  P  T  R  D  M  K  L  P  L  L  T  T  L  S  V  D  Y  L  T  T  S  L  V  *  I  L  *  H  P  S  H  L  F  I  T  A  *  G  V  G  N  L  S  Q  E  K  I  F  N  C  L  L  V  I  Y  V  S  L  S  S  W  Q  K  P  S  N  P  L  N  L  M  L  *  S  I  L  E  S  R  G  L  P  L  I  L  *  L  I  G  Q  E  L  F  I  P  N  I  I  M  *  *  G  H  L  M  Y  Y  L  P  *  R  S  L  G  K  S  V  I  W  S  N  S  G  P  W  G  N  M  E  P  L  I  *  I  L  K  K  V  I  *  L  L  L  I  T  E  E  Q  I  L  F  L  I  P  N  K  Q  A  P  S  I  I  *  V  K  S  M  I  P  T  T  *  P  S  L  A  R  R  G  E  S  E  L  P  T  *  I  R  E  L  Y  M  G  *  G  L  M  K  L  Q  Y  M  R  I  W  L  T  D  L  I  M  M  V  Y  L  E  L  H  *  I  V  S  V  F  R  L  L  L  D  I  H  *  R  C  M  V  K  E  G  R :   P  G  D  I  W  I  S  E  I  Q  F  N  V  L  K  L  Q  L  P  I  Q  Q  N  Q  E  S  S  G  F  S  T  N  S  Q  S  S  F  Q  *  M  S  L  Q  P  L  S  P  R  Q  G  K  N  L  A  L  R  *  R  P  Y  Q  C  P  I  Q  E  *  K  Q  R  N  T  T  T  M  P  N  I  L  N  L  L  S  W  D  Y  N  L  T  F  F  L  I  L  F  S  T  L  Y  *  T  L  L  F  N  I  R  I  V  S  T  Q  S  R  *  C  L  V  F  P  G  K  K  L  A  R  S  Q  R  L  L  Q  H  K  S  L  R  Q  A  I  E  T  *  D  W  E  F  L  Y  V  I  F  I  *  E  L  *  Y  F  T  M  P  C  T  I  L  C  C  N  F  G  K  Y  L  L  Y  S  E  A  C  E  G  C  G  C  S  F  C  L  R  K  Y  S  R  *  S  *  P  V  S  S  L  K  L  V  *  F  T  C  Q  F  S  F  G  Y  T  E  V  F  P  D  I  F  L  I  G  Q  M  N  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76792" stop="75731"/>
                    <exon start="74893" stop="74492"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1461</number_coding_nucleotides>
                  <number_encoded_amino_acids>487</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHIEAAIMAHLLSTTCSLDVSSSKKLHFKSINQCSTPNPTCFNMGISFSPLKLSLQSKRSAKYVIRASAVSMSQEARTQNDSGSQQTTDGASTRKKVMVIGGDGYCGWATALHLSNKGYEVAIVDNLIRRLFDDQLGLDSLTPISSIHNRIRRWKSLTGKDIQLFVGDICEFEFLAEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAIYTQHNNVIGTLNVLFAIKEFREECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAIHEDLVNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKPGEFRVFNQFTEQFSVNELAALVTKAGQKLGLEVKAISVPNPRVEAEEHYYNAKHTKLIELGLQPHLLSDSLLDSLLNFAVQYKDRVDTKQIMPSVSWKKIGAKPKTVAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78477" e_stop="78426"/>
            <exon e_start="76810" e_stop="76212"/>
            <exon e_start="74893" e_stop="74832"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.705" acc_prob="0.996" e_score="0.997"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78477" e_stop="78426" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.968">
            <gDNA_intron_boundary i_start="78425" i_stop="76811" i_length="1615"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="76810" e_stop="76212" e_length="599"/>
          </exon>
          <intron i_serial="2" don_prob="0.705" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76211" i_stop="74894" i_length="1318"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="74893" e_stop="74832" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78477" stop="78426"/>
              <exon start="76810" stop="76212"/>
              <exon start="74893" stop="74832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78471" stop="78426"/>
              <exon start="76810" stop="76574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76810" stop="76350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76810" stop="76355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76809" stop="76596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76725" stop="76282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308010" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACCTTTCTCACTCTCTTGTAAGGATTTTATGTCTAACAAGCATCACCAG : GTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAG : ACCAGGGGATATTTGGATATCAGAGATACAGTTCAATGTGTTGAAATTGCAATTGCCAATCC</gDNA_template>
            <first_frame> K  T  F  L  T  L  L  *  G  F  Y  V  *  Q  A  S  P   : G  L  R  K  L  V  G  S  Y  R  G  G  Y  H  G  T  F  T  F  Y  Y  M  F  F  R  C  L  F  Q  Q  K  A  A  F  Q  V  N  *  P  M  L  Y  S  *  S  N  M  F  *  Y  G  N  F  F  L  T  L  E  A  K  F  A  K  Q  K  V  C  K  I  C  D  Q  S  F  S  C  F  H  E  P  R  S  Q  N  T  E  *  L  W  F  S  T  D  H  *  W  S  I  H  *  E  E  G  H  G  H  W  W  *  W  L  L  W  L  G  Y  C  S  P  P  I  Q  Q  G  I  *  S  C  H  C  *  Q  P  Y  P  S  I  I  *  R  P  A  W  S  R  F  S  N  T  H  L  I  Y  S  *  P  H  K  A  L  E  I  S  H  R  K  R  Y  S  T  V  C  W  *  Y  M  *  V  *  V  L  G  R  S  L  Q  I  L  *  T  *  C  C  S  P  F  W  R  A  E  :  T  R  G  Y  L  D  I  R  D  T  V  Q  C  V  E  I  A  I  A  N   </first_frame>
            <second_frame>  K  P  F  S  L  S  C  K  D  F  M  S  N  K  H  H  Q  :  V  *  E  N  W  *  A  H  I  E  A  A  I  M  A  H  L  L  S  T  T  C  S  L  D  V  S  S  S  K  K  L  H  F  K  S  I  N  Q  C  S  T  P  N  P  T  C  F  N  M  G  I  S  F  S  P  L  K  L  S  L  Q  S  K  R  S  A  K  Y  V  I  R  A  S  A  V  S  M  S  Q  E  A  R  T  Q  N  D  S  G  S  Q  Q  T  T  D  G  A  S  T  R  K  K  V  M  V  I  G  G  D  G  Y  C  G  W  A  T  A  L  H  L  S  N  K  G  Y  E  V  A  I  V  D  N  L  I  R  R  L  F  D  D  Q  L  G  L  D  S  L  T  P  I  S  S  I  H  N  R  I  R  R  W  K  S  L  T  G  K  D  I  Q  L  F  V  G  D  I  C  E  F  E  F  L  A  E  A  F  K  S  F  E  P  D  A  V  V  H  F  G  E  Q  R :   P  G  D  I  W  I  S  E  I  Q  F  N  V  L  K  L  Q  L  P  I  </second_frame>
            <third_frame>   N  L  S  H  S  L  V  R  I  L  C  L  T  S  I  T  R :   F  K  K  I  G  R  L  I  S  R  R  L  S  W  H  I  Y  F  L  L  H  V  L  *  M  S  L  P  A  K  S  C  I  S  S  Q  L  T  N  A  L  L  L  I  Q  H  V  L  I  W  E  F  L  S  H  P  *  S  *  V  C  K  A  K  G  L  Q  N  M  *  S  E  L  Q  L  F  P  *  A  K  K  P  E  H  R  M  T  L  V  L  N  R  P  L  M  E  H  P  L  G  R  R  S  W  S  L  V  V  M  A  I  V  A  G  L  L  L  S  T  Y  P  T  R  D  M  K  L  P  L  L  T  T  L  S  V  D  Y  L  T  T  S  L  V  *  I  L  *  H  P  S  H  L  F  I  T  A  *  G  V  G  N  L  S  Q  E  K  I  F  N  C  L  L  V  I  Y  V  S  L  S  S  W  Q  K  P  S  N  P  L  N  L  M  L  *  S  I  L  E  S  R   : D  Q  G  I  F  G  Y  Q  R  Y  S  S  M  C  *  N  C  N  C  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76792" stop="76212"/>
                    <exon start="74893" stop="74833"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHIEAAIMAHLLSTTCSLDVSSSKKLHFKSINQCSTPNPTCFNMGISFSPLKLSLQSKRSAKYVIRASAVSMSQEARTQNDSGSQQTTDGASTRKKVMVIGGDGYCGWATALHLSNKGYEVAIVDNLIRRLFDDQLGLDSLTPISSIHNRIRRWKSLTGKDIQLFVGDICEFEFLAEAFKSFEPDAVVHFGEQRPGDIWISEIQFNVLKLQLPI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="80429" PGL_stop="79615"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80429" e_stop="79615"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="80429" e_stop="79615" e_length="815"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80429" stop="79751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80428" stop="79873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80424" stop="79968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80380" stop="79797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80023" stop="79615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289962" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAGGATCTTGAATTCAAATTTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAATCGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGGTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTCGTTTTGATCTGGCAACATATGAAAAACTTGAATACATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGACAGAAACTTTTTTAATATATAAAGCCTCAATAATCCTTATATGGATTGCAATAGTCAAGAAAGAAAAGGGTACAAAAGAATGACCCTAATTGTCTTTGTATTTTATGAAAATGTCTTGGTAAGACAGAATTTTCTCTTGACCTACAGATTGATAATTTGACAAATGAAATGTTTGTCTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTCATAAATGATGATTCAGTTTGATCTCAAACGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACTAGATATTTGTTTTGCAGTAAATTTACT</gDNA_template>
            <first_frame> T  R  I  L  N  S  N  L  S  Y  S  V  D  R  *  M  V  G  Q  V  K  C  T  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  G  S  P  *  I  K  V  *  C  Q  W  G  T  N  K  L  L  C  D  S  I  I  V  R  Y  Q  I  R  F  V  P  W  G  I  K  V  I  A  K  I  L  T  L  L  E  M  F  S  P  L  V  D  A  M  R  F  V  L  I  W  Q  H  M  K  N  L  N  T  C  N  E  *  L  *  C  L  A  R  Q  *  R  L  Y  E  N  P  *  N  N  R  G  V  *  S  I  *  E  F  D  R  N  F  F  N  I  *  S  L  N  N  P  Y  M  D  C  N  S  Q  E  R  K  G  Y  K  R  M  T  L  I  V  F  V  F  Y  E  N  V  L  V  R  Q  N  F  L  L  T  Y  R  L  I  I  *  Q  M  K  C  L  S  N  S  A  H  T  L  K  S  F  D  A  I  L  Y  G  *  I  A  F  I  E  Y  P  N  D  Y  E  I  T  S  *  M  M  I  Q  F  D  L  K  R  R  M  M  S  F  L  V  M  K  L  Y  L  G  A  I  R  A  L  V  H  L  T  N  N  I  *  L  D  I  C  F  A  V  N  L   </first_frame>
            <second_frame>  R  G  S  *  I  Q  I  C  H  I  V  W  T  D  K  W  L  A  K  *  N  A  Q  F  K  Y  I  L  F  H  L  E  K  *  H  F  G  L  V  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  Y  Y  A  I  V  *  S  *  D  I  K  Y  D  L  C  L  G  A  *  R  L  S  Q  K  S  *  H  Y  W  R  C  F  L  L  W  W  M  Q  *  G  S  F  *  S  G  N  I  *  K  T  *  I  H  V  M  N  N  C  N  V  *  L  D  N  E  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  T  E  T  F  L  I  Y  K  A  S  I  I  L  I  W  I  A  I  V  K  K  E  K  G  T  K  E  *  P  *  L  S  L  Y  F  M  K  M  S  W  *  D  R  I  F  S  *  P  T  D  *  *  F  D  K  *  N  V  C  L  T  V  H  I  H  *  K  V  L  M  Q  F  Y  M  D  K  S  H  S  L  S  T  P  M  I  M  R  S  L  H  K  *  *  F  S  L  I  S  N  E  G  *  *  V  S  W  *  *  N  S  I  L  V  Q  S  G  H  *  C  I  L  L  T  I  F  D  *  I  F  V  L  Q  *  I  Y  </second_frame>
            <third_frame>   E  D  L  E  F  K  F  V  I  *  C  G  Q  I  N  G  W  P  S  K  M  H  N  S  S  I  F  C  F  T  *  K  S  D  I  L  D  W  *  S  I  N  Q  G  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  R  K  I  S  N  T  I  C  A  L  G  H  K  G  Y  R  K  N  P  D  I  I  G  D  V  F  S  F  G  G  C  N  E  V  R  F  D  L  A  T  Y  E  K  L  E  Y  M  *  *  I  I  V  M  S  S  *  T  M  K  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  V  *  Q  K  L  F  *  Y  I  K  P  Q  *  S  L  Y  G  L  Q  *  S  R  K  K  R  V  Q  K  N  D  P  N  C  L  C  I  L  *  K  C  L  G  K  T  E  F  S  L  D  L  Q  I  D  N  L  T  N  E  M  F  V  *  Q  C  T  Y  T  E  K  F  *  C  N  F  I  W  I  N  R  I  H  *  V  P  Q  *  L  *  D  H  F  I  N  D  D  S  V  *  S  Q  T  K  D  D  E  F  L  G  D  E  T  L  S  W  C  N  Q  G  T  S  A  S  Y  *  Q  Y  L  T  R  Y  L  F  C  S  K  F  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0076I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="80036" PGL_stop="80710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80036" e_stop="80710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="80036" e_stop="80710" e_length="675"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80036" stop="80710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80036" stop="80437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTACATGTATTCAAGTTTTTCATATGTTGCCAGATCAAAACGAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAACCTTTATGCCCCAAGGCACAAATCGTATTTGATATCTTACGATTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTCCACACTATATGACAAATTTGAATTCAAGATCCTCGTCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTTTTCATTTTTTATTATTTTAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCGCTTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTTCTTCTTTAAGAAATTTTATATTTGGAATCAATTGGTCTATTATGCTTTTGGCGTATCATAGACTCTG</gDNA_template>
            <first_frame> F  R  H  L  D  C  F  K  D  F  H  I  T  F  I  V  *  L  D  I  T  I  I  H  Y  M  Y  S  S  F  S  Y  V  A  R  S  K  R  T  S  L  H  P  P  K  E  K  T  S  P  I  M  S  G  F  L  R  *  P  L  C  P  K  A  Q  I  V  F  D  I  L  R  L  Y  Y  R  I  I  I  Y  L  Y  P  T  D  I  I  P  *  F  M  D  Y  Q  S  K  M  S  L  F  *  V  K  Q  N  I  L  E  L  C  I  L  L  G  Q  P  F  I  C  P  H  Y  M  T  N  L  N  S  R  S  S  S  Q  F  I  S  L  S  A  T  S  Y  Q  R  Y  R  R  R  L  F  D  I  D  S  N  K  T  *  L  I  E  I  F  S  F  F  I  I  L  G  T  *  T  F  F  K  I  L  *  S  V  M  S  M  C  A  F  I  A  L  A  S  L  S  *  P  Y  *  S  F  A  P  F  F  F  K  K  F  Y  I  W  N  Q  L  V  Y  Y  A  F  G  V  S  *  T  L </first_frame>
            <second_frame>  S  D  T  S  I  V  S  R  I  F  I  *  P  S  L  S  S  *  T  L  Q  L  F  I  T  C  I  Q  V  F  H  M  L  P  D  Q  N  E  P  H  C  I  H  Q  R  R  K  H  L  Q  *  C  Q  D  F  C  D  N  L  Y  A  P  R  H  K  S  Y  L  I  S  Y  D  Y  T  I  A  *  *  F  I  C  T  P  L  T  L  Y  L  D  L  W  T  T  S  P  K  C  H  F  S  K  *  N  K  I  Y  L  N  C  A  F  Y  L  A  N  H  L  S  V  H  T  I  *  Q  I  *  I  Q  D  P  R  H  N  L  Y  H  *  A  L  P  H  I  K  D  T  V  D  G  Y  L  I  S  I  P  T  R  H  N  L  S  R  S  F  H  F  L  L  F  *  V  P  E  P  F  S  R  F  Y  E  V  L  C  Q  C  A  L  L  *  H  L  P  H  Y  H  D  H  I  D  H  L  L  L  S  S  L  R  N  F  I  F  G  I  N  W  S  I  M  L  L  A  Y  H  R  L   </second_frame>
            <third_frame>   Q  T  P  R  L  F  Q  G  F  S  Y  N  L  H  C  L  A  R  H  Y  N  Y  S  L  H  V  F  K  F  F  I  C  C  Q  I  K  T  N  L  I  A  S  T  K  G  E  N  I  S  N  N  V  R  I  F  A  I  T  F  M  P  Q  G  T  N  R  I  *  Y  L  T  I  I  L  S  H  N  N  L  F  V  P  H  *  H  Y  T  L  I  Y  G  L  P  V  Q  N  V  T  F  L  S  E  T  K  Y  T  *  I  V  H  F  T  W  P  T  I  Y  L  S  T  L  Y  D  K  F  E  F  K  I  L  V  T  I  Y  I  I  E  R  Y  L  I  S  K  I  P  S  T  V  I  *  Y  R  F  Q  Q  D  I  T  Y  R  D  L  F  I  F  Y  Y  F  R  Y  L  N  L  F  Q  D  F  M  K  C  Y  V  N  V  R  F  Y  S  T  C  L  I  I  M  T  I  L  I  I  C  S  F  L  L  *  E  I  L  Y  L  E  S  I  G  L  L  C  F  W  R  I  I  D  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80038" stop="80241"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTPRLFQGFSYNLHCLARHYNYSLHVFKFFICCQIKTNLIASTKGENISNNVRIFAITFMPQGTNRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="82522" PGL_stop="82169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82522" e_stop="82169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="82522" e_stop="82169" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82522" stop="82169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204533" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTTCATTATCAAAATGGTATGAAAGGACATTGGACTTGTGAATGTTGTCGACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAGGATAAACTGATGGTACAATTAATCTTTCAAAGTGATGTTGAGGTGTGTCATAGAAATATGATGAATTTTAAAGCCATGACAATGTGCTTATAATGCAAATTTATGAAATACAAAGAAATAATTAGTCCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATGGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATATGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATTGAAG</gDNA_template>
            <first_frame> S  F  H  Y  Q  N  G  M  K  G  H  W  T  C  E  C  C  R  P  N  N  L  T  S  L  *  I  L  Y  H  D  T  R  G  *  T  D  G  T  I  N  L  S  K  *  C  *  G  V  S  *  K  Y  D  E  F  *  S  H  D  N  V  L  I  M  Q  I  Y  E  I  Q  R  N  N  *  S  I  P  *  R  E  C  D  L  *  *  V  W  *  M  L  D  H  S  I  R  E  W  V  Q  I  *  *  N  H  Y  G  L  D  I  C  H  N  S  P  L  L  K </first_frame>
            <second_frame>  V  F  I  I  K  M  V  *  K  D  I  G  L  V  N  V  V  D  P  I  I  *  Q  V  Y  K  S  S  I  M  I  Q  E  D  K  L  M  V  Q  L  I  F  Q  S  D  V  E  V  C  H  R  N  M  M  N  F  K  A  M  T  M  C  L  *  C  K  F  M  K  Y  K  E  I  I  S  P  F  L  E  E  N  V  T  C  D  E  Y  G  E  C  S  T  I  L  *  E  N  G  S  R  Y  D  K  I  I  M  G  W  I  Y  V  T  T  H  L  Y  *   </second_frame>
            <third_frame>   F  S  L  S  K  W  Y  E  R  T  L  D  L  *  M  L  S  T  Q  *  F  D  K  F  I  N  P  L  S  *  Y  K  R  I  N  *  W  Y  N  *  S  F  K  V  M  L  R  C  V  I  E  I  *  *  I  L  K  P  *  Q  C  A  Y  N  A  N  L  *  N  T  K  K  *  L  V  H  S  L  K  R  M  *  L  V  M  S  M  V  N  A  R  P  F  Y  K  R  M  G  P  D  M  I  K  S  L  W  V  G  Y  M  S  Q  L  T  S  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0076I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="112392" PGL_stop="114342"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113114" e_stop="114342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="113114" e_stop="114342" e_length="1229"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113114" stop="113756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113613" stop="114317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113613" stop="114044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113924" stop="114342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113924" stop="114342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113924" stop="114342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGGGGTTGTTTGAAAAGAAAGGCCATGTTTGTTTATTCACCATGTTCTTAATGACAATGTTGTTTTCCTTAAGTGTTTATGGAATCTTGTATTGTCATGGTGTGTTGGCACATTTGATAAGTGGTGCCTTGATGGGGTGTCTTTGGATTCAGAGTGGGTGGATTGGTCATGATTCAGGGCATTATCAGGTGATGAGCACTCGCGGATTCAACAGATTTGCTCAAGTCCTTACTGGGAATTGCCTTGCTGGAATCAGCATTGCTTGGTGGAAGTGGAACCACAATGCTCACCACATTGCCTGCAACAGTCTTGAATATGACCCTGATCTTCAACACATGCCATTCTTTGTGGTATCTTCCAAGTTTTTCGACTCACTCACTTCTTATTTTTACGATAGGAAGATGAATTTTGATTCTTTTACTAGATTCTTGGTTAGTCATCAACATTGGACATTTTATCCTGTTATGTGTTTTGCTAGAATCAATTTGTTTGCTCAGTCATTCATATTGTTGTTATCCAACAAAAATGTGCCCCATCGAGTTCAGGAGCTTTTGGGGGTGGTTTCTTTCTGGATTTGGTATCCGTTGCTTGTTTCTTTCTTGCCAAACTGGGGCGAAAGAATTATATTTGTTCTTGCTAGTTTCACAGTGACTGGAATTCAGCATGTTCAATTCTGTTTAAACCATTTCTCATCTGAAATTTATGTTGCACCACCTAAAGGAAATGATTGGTTTGAGAAGCAAACTAATGGCTCTCTCGACATATCATGCCCTAGTTGGATGGATTGGTTTCATGGTGGATTGCAGTTTCAGATTGAGCATCATTTGTTTCCTAGATTACCAAGATGCCAACTGAGGAAAGTCTCTCCCTTTGTGAAAGACCTCTGTAAAAAGCATGGTTTGCCTTACAGTTGTGTCTCCTTCTGGAAGTCTAATGTTTTGACCATCAGCACCCTCAGAGCTGCAGCTTTGCAGGCTCGGGATTTAACTAAGCCTGTTCCAAAAAATCTAGTTTGGGAAGCCGTCAACACTCACGGTTGAGACTGAGGAGCTCAAGGAAATCCATGGTATATCATTTCCTCATGATCGATGGATTGGAGAAAAGTGCTGCTATATGTATTATTTATTTCTAGTATTGATCAATTGTAACAACAATAATCTGCATCTCCGTTTTACTGGGAATGAATATCTTTGTAATATCTAAAGAGAACAATCGTATTGTGTC</gDNA_template>
            <first_frame> *  N  G  V  V  *  K  E  R  P  C  L  F  I  H  H  V  L  N  D  N  V  V  F  L  K  C  L  W  N  L  V  L  S  W  C  V  G  T  F  D  K  W  C  L  D  G  V  S  L  D  S  E  W  V  D  W  S  *  F  R  A  L  S  G  D  E  H  S  R  I  Q  Q  I  C  S  S  P  Y  W  E  L  P  C  W  N  Q  H  C  L  V  E  V  E  P  Q  C  S  P  H  C  L  Q  Q  S  *  I  *  P  *  S  S  T  H  A  I  L  C  G  I  F  Q  V  F  R  L  T  H  F  L  F  L  R  *  E  D  E  F  *  F  F  Y  *  I  L  G  *  S  S  T  L  D  I  L  S  C  Y  V  F  C  *  N  Q  F  V  C  S  V  I  H  I  V  V  I  Q  Q  K  C  A  P  S  S  S  G  A  F  G  G  G  F  F  L  D  L  V  S  V  A  C  F  F  L  A  K  L  G  R  K  N  Y  I  C  S  C  *  F  H  S  D  W  N  S  A  C  S  I  L  F  K  P  F  L  I  *  N  L  C  C  T  T  *  R  K  *  L  V  *  E  A  N  *  W  L  S  R  H  I  M  P  *  L  D  G  L  V  S  W  W  I  A  V  S  D  *  A  S  F  V  S  *  I  T  K  M  P  T  E  E  S  L  S  L  C  E  R  P  L  *  K  A  W  F  A  L  Q  L  C  L  L  L  E  V  *  C  F  D  H  Q  H  P  Q  S  C  S  F  A  G  S  G  F  N  *  A  C  S  K  K  S  S  L  G  S  R  Q  H  S  R  L  R  L  R  S  S  R  K  S  M  V  Y  H  F  L  M  I  D  G  L  E  K  S  A  A  I  C  I  I  Y  F  *  Y  *  S  I  V  T  T  I  I  C  I  S  V  L  L  G  M  N  I  F  V  I  S  K  E  N  N  R  I  V   </first_frame>
            <second_frame>  K  M  G  L  F  E  K  K  G  H  V  C  L  F  T  M  F  L  M  T  M  L  F  S  L  S  V  Y  G  I  L  Y  C  H  G  V  L  A  H  L  I  S  G  A  L  M  G  C  L  W  I  Q  S  G  W  I  G  H  D  S  G  H  Y  Q  V  M  S  T  R  G  F  N  R  F  A  Q  V  L  T  G  N  C  L  A  G  I  S  I  A  W  W  K  W  N  H  N  A  H  H  I  A  C  N  S  L  E  Y  D  P  D  L  Q  H  M  P  F  F  V  V  S  S  K  F  F  D  S  L  T  S  Y  F  Y  D  R  K  M  N  F  D  S  F  T  R  F  L  V  S  H  Q  H  W  T  F  Y  P  V  M  C  F  A  R  I  N  L  F  A  Q  S  F  I  L  L  L  S  N  K  N  V  P  H  R  V  Q  E  L  L  G  V  V  S  F  W  I  W  Y  P  L  L  V  S  F  L  P  N  W  G  E  R  I  I  F  V  L  A  S  F  T  V  T  G  I  Q  H  V  Q  F  C  L  N  H  F  S  S  E  I  Y  V  A  P  P  K  G  N  D  W  F  E  K  Q  T  N  G  S  L  D  I  S  C  P  S  W  M  D  W  F  H  G  G  L  Q  F  Q  I  E  H  H  L  F  P  R  L  P  R  C  Q  L  R  K  V  S  P  F  V  K  D  L  C  K  K  H  G  L  P  Y  S  C  V  S  F  W  K  S  N  V  L  T  I  S  T  L  R  A  A  A  L  Q  A  R  D  L  T  K  P  V  P  K  N  L  V  W  E  A  V  N  T  H  G  *  D  *  G  A  Q  G  N  P  W  Y  I  I  S  S  *  S  M  D  W  R  K  V  L  L  Y  V  L  F  I  S  S  I  D  Q  L  *  Q  Q  *  S  A  S  P  F  Y  W  E  *  I  S  L  *  Y  L  K  R  T  I  V  L  C  </second_frame>
            <third_frame>   K  W  G  C  L  K  R  K  A  M  F  V  Y  S  P  C  S  *  *  Q  C  C  F  P  *  V  F  M  E  S  C  I  V  M  V  C  W  H  I  *  *  V  V  P  *  W  G  V  F  G  F  R  V  G  G  L  V  M  I  Q  G  I  I  R  *  *  A  L  A  D  S  T  D  L  L  K  S  L  L  G  I  A  L  L  E  S  A  L  L  G  G  S  G  T  T  M  L  T  T  L  P  A  T  V  L  N  M  T  L  I  F  N  T  C  H  S  L  W  Y  L  P  S  F  S  T  H  S  L  L  I  F  T  I  G  R  *  I  L  I  L  L  L  D  S  W  L  V  I  N  I  G  H  F  I  L  L  C  V  L  L  E  S  I  C  L  L  S  H  S  Y  C  C  Y  P  T  K  M  C  P  I  E  F  R  S  F  W  G  W  F  L  S  G  F  G  I  R  C  L  F  L  S  C  Q  T  G  A  K  E  L  Y  L  F  L  L  V  S  Q  *  L  E  F  S  M  F  N  S  V  *  T  I  S  H  L  K  F  M  L  H  H  L  K  E  M  I  G  L  R  S  K  L  M  A  L  S  T  Y  H  A  L  V  G  W  I  G  F  M  V  D  C  S  F  R  L  S  I  I  C  F  L  D  Y  Q  D  A  N  *  G  K  S  L  P  L  *  K  T  S  V  K  S  M  V  C  L  T  V  V  S  P  S  G  S  L  M  F  *  P  S  A  P  S  E  L  Q  L  C  R  L  G  I  *  L  S  L  F  Q  K  I  *  F  G  K  P  S  T  L  T  V  E  T  E  E  L  K  E  I  H  G  I  S  F  P  H  D  R  W  I  G  E  K  C  C  Y  M  Y  Y  L  F  L  V  L  I  N  C  N  N  N  N  L  H  L  R  F  T  G  N  E  Y  L  C  N  I  *  R  E  Q  S  Y  C  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113115" stop="114158"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGLFEKKGHVCLFTMFLMTMLFSLSVYGILYCHGVLAHLISGALMGCLWIQSGWIGHDSGHYQVMSTRGFNRFAQVLTGNCLAGISIAWWKWNHNAHHIACNSLEYDPDLQHMPFFVVSSKFFDSLTSYFYDRKMNFDSFTRFLVSHQHWTFYPVMCFARINLFAQSFILLLSNKNVPHRVQELLGVVSFWIWYPLLVSFLPNWGERIIFVLASFTVTGIQHVQFCLNHFSSEIYVAPPKGNDWFEKQTNGSLDISCPSWMDWFHGGLQFQIEHHLFPRLPRCQLRKVSPFVKDLCKKHGLPYSCVSFWKSNVLTISTLRAAALQARDLTKPVPKNLVWEAVNTHG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="112392" e_stop="113075"/>
            <exon e_start="113271" e_stop="113432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.078" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112392" e_stop="113075" e_length="684"/>
          </exon>
          <intron i_serial="1" don_prob="0.078" acc_prob="0.979">
            <gDNA_intron_boundary i_start="113076" i_stop="113270" i_length="195"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="113271" e_stop="113432" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112392" stop="112815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112397" stop="112811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112767" stop="113075"/>
              <exon start="113271" stop="113432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCACTTCATCACTCACACTCCATTGATTCACATTCACTCACTGAAATACACTCTCCCATAGAAAATATCTTCAATTTTCATTAAACAAGTTCAAGATTTTTGCCTACGATTCTTTGCTACACAGACAAGGTAAGAGGGTTTTGGTAAGTCTTTTGAACAGCTAACCATATATATATAGCCTTATAACTGAAAAGGGGTATGTATTAATTTTCAAAAAAAAAATATATGTTGTGGCGCCTCCTTGCATATGCCAACAATGTCTAGAGTTGCAGAAAAGTAAAAGGGTTTGTCAGAACAGAATTTCAATTAAAGATTACATCTTTTTACAAGTTGTGATCTTACAATTCTTGTTTTTTTTTTTCTTTTTTGAGAAGAATTTAGGGAAGGGTCTTTTTCAGATCTCTTTTTCTAGCATTTTTCTTATGGCAGATTCAAGAAAGTACATTTCTAGTGAGGAACTGAAGAATCACAACAAACCAGGGGATCTGTGGATATCCATTCAGGGTAAGGTGTATGATGTATCAGATTGGGTGAAGGAACATCCTGGTGGTGATTTCCCACTGTTAAATCTTGCTGGACAGGATGTTACTGATGCATTTGTTGCATTTCATCCTGCTACTGCTTGGAAGTATCTTGACAAGTTCTTTAAGGGGTTTTACCTCAAGGATTATTCTGTTTCTGAG : AGTGGGTGGATTGGTCATGATTCAGGGCATTATCAGGTGATGAGCACTCGCGGATTCAACAGATTTGCTCAAGTCCTTACTGGGAATTGCCTTGCTGGAATCAGCATTGCTTGGTGGAAGTGGAACCACAATGCTCACCACATTGCCTGCAACAGTCTTGAA</gDNA_template>
            <first_frame> F  T  S  S  L  T  L  H  *  F  T  F  T  H  *  N  T  L  S  H  R  K  Y  L  Q  F  S  L  N  K  F  K  I  F  A  Y  D  S  L  L  H  R  Q  G  K  R  V  L  V  S  L  L  N  S  *  P  Y  I  Y  S  L  I  T  E  K  G  Y  V  L  I  F  K  K  K  I  Y  V  V  A  P  P  C  I  C  Q  Q  C  L  E  L  Q  K  S  K  R  V  C  Q  N  R  I  S  I  K  D  Y  I  F  L  Q  V  V  I  L  Q  F  L  F  F  F  F  F  F  E  K  N  L  G  K  G  L  F  Q  I  S  F  S  S  I  F  L  M  A  D  S  R  K  Y  I  S  S  E  E  L  K  N  H  N  K  P  G  D  L  W  I  S  I  Q  G  K  V  Y  D  V  S  D  W  V  K  E  H  P  G  G  D  F  P  L  L  N  L  A  G  Q  D  V  T  D  A  F  V  A  F  H  P  A  T  A  W  K  Y  L  D  K  F  F  K  G  F  Y  L  K  D  Y  S  V  S  E  :  S  G  W  I  G  H  D  S  G  H  Y  Q  V  M  S  T  R  G  F  N  R  F  A  Q  V  L  T  G  N  C  L  A  G  I  S  I  A  W  W  K  W  N  H  N  A  H  H  I  A  C  N  S  L  E </first_frame>
            <second_frame>  S  L  H  H  S  H  S  I  D  S  H  S  L  T  E  I  H  S  P  I  E  N  I  F  N  F  H  *  T  S  S  R  F  L  P  T  I  L  C  Y  T  D  K  V  R  G  F  W  *  V  F  *  T  A  N  H  I  Y  I  A  L  *  L  K  R  G  M  Y  *  F  S  K  K  K  Y  M  L  W  R  L  L  A  Y  A  N  N  V  *  S  C  R  K  V  K  G  F  V  R  T  E  F  Q  L  K  I  T  S  F  Y  K  L  *  S  Y  N  S  C  F  F  F  S  F  L  R  R  I  *  G  R  V  F  F  R  S  L  F  L  A  F  F  L  W  Q  I  Q  E  S  T  F  L  V  R  N  *  R  I  T  T  N  Q  G  I  C  G  Y  P  F  R  V  R  C  M  M  Y  Q  I  G  *  R  N  I  L  V  V  I  S  H  C  *  I  L  L  D  R  M  L  L  M  H  L  L  H  F  I  L  L  L  L  G  S  I  L  T  S  S  L  R  G  F  T  S  R  I  I  L  F  L  R :   V  G  G  L  V  M  I  Q  G  I  I  R  *  *  A  L  A  D  S  T  D  L  L  K  S  L  L  G  I  A  L  L  E  S  A  L  L  G  G  S  G  T  T  M  L  T  T  L  P  A  T  V  L   </second_frame>
            <third_frame>   H  F  I  T  H  T  P  L  I  H  I  H  S  L  K  Y  T  L  P  *  K  I  S  S  I  F  I  K  Q  V  Q  D  F  C  L  R  F  F  A  T  Q  T  R  *  E  G  F  G  K  S  F  E  Q  L  T  I  Y  I  *  P  Y  N  *  K  G  V  C  I  N  F  Q  K  K  N  I  C  C  G  A  S  L  H  M  P  T  M  S  R  V  A  E  K  *  K  G  L  S  E  Q  N  F  N  *  R  L  H  L  F  T  S  C  D  L  T  I  L  V  F  F  F  L  F  *  E  E  F  R  E  G  S  F  S  D  L  F  F  *  H  F  S  Y  G  R  F  K  K  V  H  F  *  *  G  T  E  E  S  Q  Q  T  R  G  S  V  D  I  H  S  G  *  G  V  *  C  I  R  L  G  E  G  T  S  W  W  *  F  P  T  V  K  S  C  W  T  G  C  Y  *  C  I  C  C  I  S  S  C  Y  C  L  E  V  S  *  Q  V  L  *  G  V  L  P  Q  G  L  F  C  F  *   : E  W  V  D  W  S  *  F  R  A  L  S  G  D  E  H  S  R  I  Q  Q  I  C  S  S  P  Y  W  E  L  P  C  W  N  Q  H  C  L  V  E  V  E  P  Q  C  S  P  H  C  L  Q  Q  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112557" stop="113075"/>
                    <exon start="113271" stop="113432"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYIYSLITEKGYVLIFKKKIYVVAPPCICQQCLELQKSKRVCQNRISIKDYIFLQVVILQFLFFFFFFEKNLGKGLFQISFSSIFLMADSRKYISSEELKNHNKPGDLWISIQGKVYDVSDWVKEHPGGDFPLLNLAGQDVTDAFVAFHPATAWKYLDKFFKGFYLKDYSVSESGWIGHDSGHYQVMSTRGFNRFAQVLTGNCLAGISIAWWKWNHNAHHIACNSLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="114474" PGL_stop="113751"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114474" e_stop="113751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="114474" e_stop="113751" e_length="724"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114474" stop="113751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432415" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAGTTCTGCAGTAACCTGCAAAGCTACTAGTTTGGTGATATTATACATTAAATCGAACCTGGGAGGGACAATATGAACTTTTTTGTCGTTATCTAAGATCAAATACAAGTAAGTAAGCCTTAATAGAATGACACAATACGATTGTTCTCTTTAGATATTACAAAGATATTCATTCCCAGTAAAACGGAGATGCAGATTATTGTTGTTACAATTGATCAATACTAGAAATAAATAATACATATAGCAGCACTTTTCTCCAATCCATCGATCATGAGGAAATGATATACCATGGATTTCCTTGAGCTCCTCAGTCTCAACCGTGAGTGTTGACGGCTTCCCAAACTAGATTTTTTGGAACAGGCTTAGTTAAATCCCGAGCCTGCAAAGCTGCAGCTCTGAGGGTGCTGATGGTCAAAACATTAGACTTCCAGAAGGAGACACAACTGTAAGGCAAACCATGCTTTTTACAGAGGTCTTTCACAAAGGGAGAGACTTTCCTCAGTTGGCATCTTGGTAATCTAGGAAACAAATGATGCTCAATCTGAAACTGCAATCCACCATGAAACCAATCCATCCAACTAGGGCATGATATGTCGAGAGAGCCATTAGTTTGCTTCTCAAACCAATCATTTCCTTTAGGTGGTGCAACATAAATTTCAGATGAGAAATGGTTTAAACAGAATTGAACATGCTGAATTCCAGTCACTGTGAAACTAGCAAG</gDNA_template>
            <first_frame> N  K  F  C  S  N  L  Q  S  Y  *  F  G  D  I  I  H  *  I  E  P  G  R  D  N  M  N  F  F  V  V  I  *  D  Q  I  Q  V  S  K  P  *  *  N  D  T  I  R  L  F  S  L  D  I  T  K  I  F  I  P  S  K  T  E  M  Q  I  I  V  V  T  I  D  Q  Y  *  K  *  I  I  H  I  A  A  L  F  S  N  P  S  I  M  R  K  *  Y  T  M  D  F  L  E  L  L  S  L  N  R  E  C  *  R  L  P  K  L  D  F  L  E  Q  A  *  L  N  P  E  P  A  K  L  Q  L  *  G  C  *  W  S  K  H  *  T  S  R  R  R  H  N  C  K  A  N  H  A  F  Y  R  G  L  S  Q  R  E  R  L  S  S  V  G  I  L  V  I  *  E  T  N  D  A  Q  S  E  T  A  I  H  H  E  T  N  P  S  N  *  G  M  I  C  R  E  S  H  *  F  A  S  Q  T  N  H  F  L  *  V  V  Q  H  K  F  Q  M  R  N  G  L  N  R  I  E  H  A  E  F  Q  S  L  *  N  *  Q  </first_frame>
            <second_frame>  T  S  S  A  V  T  C  K  A  T  S  L  V  I  L  Y  I  K  S  N  L  G  G  T  I  *  T  F  L  S  L  S  K  I  K  Y  K  *  V  S  L  N  R  M  T  Q  Y  D  C  S  L  *  I  L  Q  R  Y  S  F  P  V  K  R  R  C  R  L  L  L  L  Q  L  I  N  T  R  N  K  *  Y  I  *  Q  H  F  S  P  I  H  R  S  *  G  N  D  I  P  W  I  S  L  S  S  S  V  S  T  V  S  V  D  G  F  P  N  *  I  F  W  N  R  L  S  *  I  P  S  L  Q  S  C  S  S  E  G  A  D  G  Q  N  I  R  L  P  E  G  D  T  T  V  R  Q  T  M  L  F  T  E  V  F  H  K  G  R  D  F  P  Q  L  A  S  W  *  S  R  K  Q  M  M  L  N  L  K  L  Q  S  T  M  K  P  I  H  P  T  R  A  *  Y  V  E  R  A  I  S  L  L  L  K  P  I  I  S  F  R  W  C  N  I  N  F  R  *  E  M  V  *  T  E  L  N  M  L  N  S  S  H  C  E  T  S  K </second_frame>
            <third_frame>   Q  V  L  Q  *  P  A  K  L  L  V  W  *  Y  Y  T  L  N  R  T  W  E  G  Q  Y  E  L  F  C  R  Y  L  R  S  N  T  S  K  *  A  L  I  E  *  H  N  T  I  V  L  F  R  Y  Y  K  D  I  H  S  Q  *  N  G  D  A  D  Y  C  C  Y  N  *  S  I  L  E  I  N  N  T  Y  S  S  T  F  L  Q  S  I  D  H  E  E  M  I  Y  H  G  F  P  *  A  P  Q  S  Q  P  *  V  L  T  A  S  Q  T  R  F  F  G  T  G  L  V  K  S  R  A  C  K  A  A  A  L  R  V  L  M  V  K  T  L  D  F  Q  K  E  T  Q  L  *  G  K  P  C  F  L  Q  R  S  F  T  K  G  E  T  F  L  S  W  H  L  G  N  L  G  N  K  *  C  S  I  *  N  C  N  P  P  *  N  Q  S  I  Q  L  G  H  D  M  S  R  E  P  L  V  C  F  S  N  Q  S  F  P  L  G  G  A  T  *  I  S  D  E  K  W  F  K  Q  N  *  T  C  *  I  P  V  T  V  K  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0076I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="132671" PGL_stop="133702"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132671" e_stop="133702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="132671" e_stop="133702" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132671" stop="133211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133115" stop="133702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133115" stop="133702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133115" stop="133669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTCATATGATGGAGAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAATCTATCAAAAATCACCCAAATAGAGTCATACTTACTCATCGTCTTTGGAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTATTCATACTTTACTTGCTGACAATTCGGGAATTGAGCAACAAAATCAACAATGTCACGCTTAATCATACTCCACCAAAAATATTGCTTTAGATCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGGGCCTCCGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTTCTCATCAATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCGGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTGATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAGGTCATTAGCCAAAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGGAACCTGCAAGTGGGCTAGGCTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGCCTTTCCCGGATGATACAAGATAGTGATAATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACTGCTTCTAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACTTTTAATTGA</gDNA_template>
            <first_frame> S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  H  M  M  E  S  G  T  P  C  N  R  T  I  S  E  M  *  I  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  K  I  T  Q  I  E  S  Y  L  L  I  V  F  G  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  W  A  F  S  E  V  S  L  Q  A  S  G  I  H  T  L  L  A  D  N  S  G  I  E  Q  Q  N  Q  Q  C  H  A  *  S  Y  S  T  K  N  I  A  L  D  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  G  P  P  *  E  *  C  E  S  N  H  R  R  G  V  H  I  P  F  P  *  F  S  K  H  L  S  H  Q  F  L  L  L  *  P  L  L  A  T  P  Y  L  G  S  G  S  V  S  H  R  *  T  A  F  L  *  S  Y  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  H  L  L  L  A  S  *  G  H  *  P  K  S  E  P  L  *  P  M  G  V  *  E  P  A  S  G  L  G  F  P  C  S  L  P  F  Y  L  R  H  L  P  P  H  *  P  F  P  D  D  T  R  *  *  *  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  R  *  S  I  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  S  N  S  K  S  W  V  G  *  L  R  S  C  T  F  N  * </first_frame>
            <second_frame>  Q  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  R  V  E  L  H  A  I  E  Q  F  L  R  C  K  F  W  L  T  S  L  H  Y  K  S  P  *  P  E  *  N  E  Q  T  *  L  I  Y  Q  K  S  P  K  *  S  H  T  Y  S  S  S  L  E  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  G  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  E  L  S  N  K  I  N  N  V  T  L  N  H  T  P  P  K  I  L  L  *  I  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  G  L  R  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  S  Q  N  T  F  L  I  N  F  C  F  F  S  L  S  S  Q  H  L  I  S  D  P  D  Q  F  L  I  G  K  L  L  S  F  D  L  I  K  K  G  R  S  C  L  H  T  G  Q  K  S  S  L  L  I  Y  F  *  P  H  K  V  I  S  Q  S  L  N  L  S  S  Q  W  A  S  R  N  L  Q  V  G  *  A  S  H  A  P  C  L  S  T  *  G  I  C  H  H  I  S  L  S  R  M  I  Q  D  S  D  N  H  S  P  S  V  V  P  S  I  S  S  V  S  N  S  N  L  S  E  *  R  H  T  V  N  Y  D  D  P  Y  R  L  H  T  *  P  H  I  D  N  A  S  I  A  L  M  Q  T  L  L  L  L  T  P  N  R  G  S  D  N  Y  V  H  A  L  L  I   </second_frame>
            <third_frame>   S  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  S  Y  D  G  E  W  N  S  M  Q  S  N  N  F  *  D  V  N  F  G  *  L  L  C  I  I  S  H  L  D  R  N  E  M  S  R  L  S  *  S  I  K  N  H  P  N  R  V  I  L  T  H  R  L  W  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  Y  S  Y  F  T  C  *  Q  F  G  N  *  A  T  K  S  T  M  S  R  L  I  I  L  H  Q  K  Y  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  W  A  S  V  R  I  V  *  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  F  S  S  I  F  A  S  L  A  S  P  R  N  T  L  S  R  I  R  I  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  F  T  S  S  L  I  R  S  L  A  K  V  *  T  S  L  A  N  G  R  L  G  T  C  K  W  A  R  L  P  M  L  P  A  F  L  L  K  A  S  A  T  T  L  A  F  P  G  *  Y  K  I  V  I  I  I  V  L  Q  *  F  H  P  S  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  M  I  H  I  D  F  T  L  N  P  I  *  I  M  P  P  L  L  *  C  K  H  Y  C  F  *  L  Q  I  V  G  R  I  I  T  F  M  H  F  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133107" stop="133346"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMGLRKNSVNQIIDAGYTYPSLNSQNTFLINFCFFSLSSQHLISDPDQFLIGKLLSFDLIKKGRSCLHTGQKSSLLIYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133135" stop="133374"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSSTRGTHTLPLILKTPFSSIFASLASPRNTLSRIRISFSSVNCFPLILSRKEDLASTQAKNPPFSFTSSLIRSLAKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132824" stop="133033"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADLVNLSKITQIESYLLIVFGDQPRSPLQFSPTSIQEWAFSEVSLQASGIHTLLADNSGIEQQNQQCHA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132861" stop="133061"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTYSSSLETNHEVHCNSLPLPFRNGHSLKCPSRPLVFILYLLTIRELSNKINNVTLNHTPPKILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 306 chains have been computed
$ 
$ memory statistics:
$ 199936 bytes spliced alignments in total
$ 96 spliced alignments have been stored
$ 2082 bytes was the average size of a spliced alignment
$ 23800 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1586 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 376 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:41:16
-->
