<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:54:51"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0190C13-GF7tz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0190C13-GF7tz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0190C13-GF7tz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546115" ref_strand="+" ref_description="SGN-E546115 [TUS-69-F1]">
      <seq>tttccaactgaaattgaaatatcaaccaatcaatccccttccactacagctatctggtggtgctatgagtggcaaagcatttcttctctcccactacagcttttctcctcccaatatacctcgaacaaatttcaatgttcataattcattttaccatactagtggaagtggaagtggaagtggaagaggaagaggtcgatttggatatgtgcaaagagagttattattaattaagaggaatagtagtagtcggaagttgtgggctgatgtcaagtcaaaacccttcaaaattgcagaggatgatgctttattgagaaagaaagaagatggagataactcagtgggtctaccgcaagagtttccaaagcgttgggttattgtcattctttgtttctccgcttttcttctttgtaatatggatagagttaatatgagtatcgctatacttcccatggcatccgaatataactggactcctactactgttggtttaatacaatcttcatttttctggggttatcttcttactcagatagcaggaggtatatgggcagacactgttggtggcaaggctgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0190C13-GF7tz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0190C13.1" temp_strand="+" temp_description="C00HBa0190C13.1  CU210847.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0190C13 sequenced_by:sanger upload_account_name:uk">
        <position start="40484" stop="41742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40783" g_stop="41314" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41315" i_stop="41396" i_length="82">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41397" g_stop="41442" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="578" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0190C13.1" gen_strand="+" ref_id="SGN-E546115" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0190C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40783" e_stop="41314"/>
          <exon e_start="41397" e_stop="41442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCAACTGAAACTGAAATATCAACCAATCAATCCCCTTCCACTACAGCTGTCTGGTGGTGCTATGAGTGGCAAAGCATTTCTTCTCTCCCACTACAGCTTTTCTCCTCCCAATATACCTCGAACAAATTTCAATGTTCATAATTCATTTTACCATACTAGTGAAAGTGGAAGTGGAAGAGGAAGAGGAAGAGGTCGATTTGGATATGGGCAAAGAGAGTTATTATTAGTTAAGAGGAATAGTAGTAGTCGGAAGTTGTGGGCTGATGTCAAGTCAAAACCCTTCAAAATTGCAGAGGATGATGCTTTATTGAGAAAGAAAGAAGATGGAGATAACTCAGTGGGTCTACCGCAAGAGTTTCCAAAGCGTTGGGTTATTGTCATTCTTTGTTTCTCCGCTTTTCTTCTTTGTAATATGGATAGAGTTAATATGAGTATCGCTATACTTCCCATGGCATCCGAATATAACTGGACTCCTATTACTGTTGGTTTAATACAATCTTCATTTTTCTGGGGTTATCTTCTTACTCAGGTGAAACGACAAATCAATCAATCTTCATTCTTACTACACAATAGTAACTTTTATTTGGGATCCTCACTCATTCACTAGACAGATAGCAGGAGGTATATGGGCAGACACTGTTGGTGGCAAGGCTGTCT</genome_strand>
        <mrna_strand>TTTCCAACTGAAATTGAAATATCAACCAATCAATCCCCTTCCACTACAGCTATCTGGTGGTGCTATGAGTGGCAAAGCATTTCTTCTCTCCCACTACAGCTTTTCTCCTCCCAATATACCTCGAACAAATTTCAATGTTCATAATTCATTTTACCATACTAGTGGAAGTGGAAGTGGAAGTGGAAGAGGAAGAGGTCGATTTGGATATGTGCAAAGAGAGTTATTATTAATTAAGAGGAATAGTAGTAGTCGGAAGTTGTGGGCTGATGTCAAGTCAAAACCCTTCAAAATTGCAGAGGATGATGCTTTATTGAGAAAGAAAGAAGATGGAGATAACTCAGTGGGTCTACCGCAAGAGTTTCCAAAGCGTTGGGTTATTGTCATTCTTTGTTTCTCCGCTTTTCTTCTTTGTAATATGGATAGAGTTAATATGAGTATCGCTATACTTCCCATGGCATCCGAATATAACTGGACTCCTACTACTGTTGGTTTAATACAATCTTCATTTTTCTGGGGTTATCTTCTTACTCAG..................................................................................ATAGCAGGAGGTATATGGGCAGACACTGTTGGTGGCAAGGCTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0190C13-GF7tz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356491" ref_strand="+" ref_description="SGN-E356491 [cLHT-20-B5]">
      <seq>ttccaactgaaattgaaatatcaaccaatcaatccccttccactacagctatctggtggtgctatgagtggcaaagcatttcttctctcccactacagcttttctcctcccaatatacctcgaacaaatttcaatgttcataattcattttaccatactagtggaagtggaagtggaagtggaagaggaagaggtcgatttggatatgtgcaaagagagttattattaattaagaggaatagtagtagtcggaagttgtgggctgatgtcaagtcaaaacccttcaaaattgcagaggatgatgctttattgagaaagaaagaagatggagataactcagtgggtctaccgcaagagtttccaaagcgttgggttattgtcattctttgtttctccgcttttcttctttgtaatatggatagagttaatatgagtatcgctatacttcccatggcatccgaatataactggactcctactactgttggtttaatacaatcttcattcttctggggttatcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0190C13-GF7tz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0190C13.1" temp_strand="+" temp_description="C00HBa0190C13.1  CU210847.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0190C13 sequenced_by:sanger upload_account_name:uk">
        <position start="40484" stop="41607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40784" g_stop="41307" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0190C13.1" gen_strand="+" ref_id="SGN-E356491" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0190C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40784" e_stop="41307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAACTGAAACTGAAATATCAACCAATCAATCCCCTTCCACTACAGCTGTCTGGTGGTGCTATGAGTGGCAAAGCATTTCTTCTCTCCCACTACAGCTTTTCTCCTCCCAATATACCTCGAACAAATTTCAATGTTCATAATTCATTTTACCATACTAGTGAAAGTGGAAGTGGAAGAGGAAGAGGAAGAGGTCGATTTGGATATGGGCAAAGAGAGTTATTATTAGTTAAGAGGAATAGTAGTAGTCGGAAGTTGTGGGCTGATGTCAAGTCAAAACCCTTCAAAATTGCAGAGGATGATGCTTTATTGAGAAAGAAAGAAGATGGAGATAACTCAGTGGGTCTACCGCAAGAGTTTCCAAAGCGTTGGGTTATTGTCATTCTTTGTTTCTCCGCTTTTCTTCTTTGTAATATGGATAGAGTTAATATGAGTATCGCTATACTTCCCATGGCATCCGAATATAACTGGACTCCTATTACTGTTGGTTTAATACAATCTTCATTTTTCTGGGGTTATCTTCT</genome_strand>
        <mrna_strand>TTCCAACTGAAATTGAAATATCAACCAATCAATCCCCTTCCACTACAGCTATCTGGTGGTGCTATGAGTGGCAAAGCATTTCTTCTCTCCCACTACAGCTTTTCTCCTCCCAATATACCTCGAACAAATTTCAATGTTCATAATTCATTTTACCATACTAGTGGAAGTGGAAGTGGAAGTGGAAGAGGAAGAGGTCGATTTGGATATGTGCAAAGAGAGTTATTATTAATTAAGAGGAATAGTAGTAGTCGGAAGTTGTGGGCTGATGTCAAGTCAAAACCCTTCAAAATTGCAGAGGATGATGCTTTATTGAGAAAGAAAGAAGATGGAGATAACTCAGTGGGTCTACCGCAAGAGTTTCCAAAGCGTTGGGTTATTGTCATTCTTTGTTTCTCCGCTTTTCTTCTTTGTAATATGGATAGAGTTAATATGAGTATCGCTATACTTCCCATGGCATCCGAATATAACTGGACTCCTACTACTGTTGGTTTAATACAATCTTCATTCTTCTGGGGTTATCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0190C13-GF7tz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546073" ref_strand="+" ref_description="SGN-E546073 [TUS-69-E1](-)">
      <seq>tgtcagaaagatcatgcaaacaataggatttcttggacctgctttcttttaaccaagttgagccgtgttgactctccagcaatggcagttctctgtatggcatgcagtcagggaagtgatgctttttcacaatctggtttgtattcaaaccatcaggatattgctccccggtattctggtgtactccttggactatccaatactgctggggttctagctggtgtttttggcacagcagcaactggttacatcttgcaacatggttcttgggatgatgtgtttaaggtttcagttgggctttacttggttggaacagtagtttggaatgccttttcgactggtgagaagatcattgattgacacttggagacatcaaacttaagcccttgttgttatggtggatatgcatgtggtgcaatcaggaaggcgtgattgattaagaattggagatgaaaagagatttagttgagaatagaataggcaggagtatctttggcagtaaatcagaaaatgagggaacagatgtctttgacactggattgatttaaacaaggagactcccaagatttccacgaagataccagagtatgttggagtttgattgaacaaccaaatgaacaaggatacatgattgacatagcttgtaaatctgtgtgaagttaactaatccaattcctgcagactgcagtaatataggtaaaacagttttaatatcttattaatgttttataagaattaagggctcttattagtatttaattgcaccgacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0190C13-GF7tz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0190C13.1" temp_strand="+" temp_description="C00HBa0190C13.1  CU210847.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0190C13 sequenced_by:sanger upload_account_name:uk">
        <position start="43702" stop="46361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44004" g_stop="44105" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="111" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44106" i_stop="44436" i_length="331">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44437" g_stop="44502" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="177" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44503" i_stop="44705" i_length="203">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44706" g_stop="44790" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="262" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44791" i_stop="45551" i_length="761">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45552" g_stop="46061" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="772" r_length="510" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0190C13.1" gen_strand="+" ref_id="SGN-E546073" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0190C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44004" e_stop="44105"/>
          <exon e_start="44437" e_stop="44502"/>
          <exon e_start="44706" e_stop="44790"/>
          <exon e_start="45552" e_stop="46061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGCAAACAATAGGATTTCTTGGACCTGCTTTCTTTTTAACCCAGTTGAGCCGTGTTGACTCTCCAGCAATGGCAGTTCTCTGTATGGCATGCAGTCAGGTTTTTCTTATATTGAACAAGAATATTTGAGTCCTGCATAGCTTTTTGACAGATATTGTTCAACTGTGAAAACTATGATGTATAAGTAGTACGGAACTGTCAAAGCATGTACCGTCTCTCTCAGTTTGCATATGAGTTAACACTGTGGAATGTGCAGTTTCATGTAAATGGATAGGGTAGGGCAAAGCAAATGGAAGTATTGAAGAAGTTTAATTAATAATATTGCCTTTGTTCAGATATCCATCAAATTAGTTCTTGTTGATAAGATGTAATCTCTTCTTGCTTCAGCTTATAAGGTGCCCCTTTGAGATATTCTTCATTCTTGAAACAGGGAAGTGATGCTTTTTCACAATCTGGTTTGTATTCAAACCATCAGGATATTGCTCCACGGTATTCTGTGAGTATTACTTTATTGTCTTTCCACCTCTTAGTTTTGGTGTTTGTTAATGTATAATGAGCTTCAAATAATATCTGAGTAACCGTTGTGTATTACTTTGTGTTCTCAAGATGAGAATTATTTATGATGTATTATTGCTGCGTGTTATATAAATTGTTTATGATATTGTCGGTAATATGAGATAATGAATGGTACTTTTTCAGGGTGTACTCCTTGGACTATCCAATACTGCTGGGGTTCTAGCTGGTGTTTTTGGCACAGCAGCAACTGGTTACATCTTGCAACATGGTATTTCATCCTTTTCATTTTAGTCTAGATAATTTAGGGATGCCTGTGCTACAGAATTGATAGACTTTTTTTTTTAAATTTTTGGCGGTAGTGCTATTGGAAACAACCTAAAGATATTTTGACTTCTATGTCCATGTTACTACTGAGAACTTACAAGACATTACTAACCACATAGAGTAAATGGATTAAGGGCTCACCTGGTTTTAGTTTCACCTGATTTCATATGTTTGTTTGTGGTAAATTAGTTCTTTGAATAATTATTGTGGATGGTTTGTACGGGAAACTCTCTTTGCAACTAATAATAATAAATTGATTTTTTAAGACTGATCATCTTTAAAATATGGTTTCAACAATCAGTTGTTTAGGTGATCATGATCAATTTTCTTTTACCCAATTCTCATAATATAGTCATTTTCACACTCACCTGCTTAGATATGCTTTGTGAAAATTAAATCATTCGAATTAGACCTGTTCTTGTTAATAATAATGAGAGTTGCTTTCAGCTGATCAACAGACTTTAACAACCACTGTCTTGTTATCATGGTTTGCAAGAGCATTAGCTTGGCAATGTAGGAGCTAAAAAAATGGTCTTTACCTCGTCGCAATGTCAGTAACGCTTTCCACTCTTGGGGGAGGCCTTATTTGCAGTCAGTATGACTACTCATTTTCTCTCATCATCTGTCAAGATAGAACAGAAATAAAGACATGATAGCCCTTCAAAAGCATGTGTCCCTAAAATGAATTATATTTTCTGTTCTCAGGTTCTTGGGATGATGTGTTTAAAGTTTCAGTTGGGCTTTACTTGGTTGGAACAGTAGTTTGGAATGCCTTTTCAACTGGTGAGAAGATCATTGATTGACACTTGGAGACAGCAAACTTAAGCCCTTGGTGTTATAGTGGATATGCATGTGGTGCAATCAGGAAGGCGTGATTGATTAAGAATTGGAGATGAAAAGAGATTTAGTTGAGAATAGAATAGGCAGGAGTATCTTTGGCAGTAAATCAGAAAATGAGGGAACAGATGTCTTTGACACTGGATTGATTTAAACAAGGAGACTCCCAAGATTTCCACGAAGATACCAGAGTATTGTTGGAGTTTGATTGAACAACCAAATGAACAAGGATACATGATTGACATAGCTTGTAAATCTGTGTAAAGTT-ACTAATCCAATCCCTGCAGACTGCAGTAATATAGGTAAAACAGTTTTAATATCTTATTAATGTTTTGTAAGAATTAAGGGCTCTTATTAGTATTTAATTGCACTGACAAA</genome_strand>
        <mrna_strand>ATCATGCAAACAATAGGATTTCTTGGACCTGCTTTC-TTTTAACCAAGTTGAGCCGTGTTGACTCTCCAGCAATGGCAGTTCTCTGTATGGCATGCAGTCAG...........................................................................................................................................................................................................................................................................................................................................GGAAGTGATGCTTTTTCACAATCTGGTTTGTATTCAAACCATCAGGATATTGCTCCCCGGTATTCT...........................................................................................................................................................................................................GGTGTACTCCTTGGACTATCCAATACTGCTGGGGTTCTAGCTGGTGTTTTTGGCACAGCAGCAACTGGTTACATCTTGCAACATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGGGATGATGTGTTTAAGGTTTCAGTTGGGCTTTACTTGGTTGGAACAGTAGTTTGGAATGCCTTTTCGACTGGTGAGAAGATCATTGATTGACACTTGGAGACATCAAACTTAAGCCCTTGTTGTTATGGTGGATATGCATGTGGTGCAATCAGGAAGGCGTGATTGATTAAGAATTGGAGATGAAAAGAGATTTAGTTGAGAATAGAATAGGCAGGAGTATCTTTGGCAGTAAATCAGAAAATGAGGGAACAGATGTCTTTGACACTGGATTGATTTAAACAAGGAGACTCCCAAGATTTCCACGAAGATACCAGAGTA-TGTTGGAGTTTGATTGAACAACCAAATGAACAAGGATACATGATTGACATAGCTTGTAAATCTGTGTGAAGTTAACTAATCCAATTCCTGCAGACTGCAGTAATATAGGTAAAACAGTTTTAATATCTTATTAATGTTTTATAAGAATTAAGGGCTCTTATTAGTATTTAATTGCACCGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0190C13-GF7tz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306608" ref_strand="+" ref_description="SGN-E306608 [cLEY-19-E13]">
      <seq>atacccaacaacttaaggagttcttggatcgtatcattactgctggtgcggaggttttactcgtcatgaatgataaacgatgagttctccagcagtttgatttccttttttgaattgagctgtttgaagcacaatggatggtacatgttgcactatgaagactttagcccaagtttgctattaatacataccctgggcacatgatgtgaatttgattgattgttttgaaagttatcttaaaccctatctaggtgactataattgaaaatcattcaaagttttgacttgagttatcttaaaggtatactttattgcttcttgttggatcttccttcaaagtatgaaatgaacttacgctatttcagctgcttcttacacattatctttggaaatagtcattactttttcggccagtagaaaattggttgctcttttaacactctggaaaagaagaaagaagaaaggaaaaaggtgaagtatatacatctaaaatatggttttgtctgtagcaagacattgggctctattatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0190C13-GF7tz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0190C13.1" temp_strand="-" temp_description="C00HBa0190C13.1  CU210847.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0190C13 sequenced_by:sanger upload_account_name:uk">
        <position start="51670" stop="50539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51370" g_stop="50839" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0190C13.1" gen_strand="-" ref_id="SGN-E306608" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0190C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51370" e_stop="50839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCCAACAACTTAGGGAGTTCTTGGATCGTATCATTACTGCTGGTGCGGAGGTTTTACTCGTCATGAATGATAAACGATGAGTTCTCCAGCAGTTTGATTTGCTTTTTTGACTTGAGCTGTTTGAAGCACAATGGATGGTACATGTTGCACTATGAAGACTTTAGCCCAAGTTTGCTATTAATACATACCCTGGGCACATGATGTGAATTTGATTGATTGTTTTGAAAGTTATCTTAAACCCTATCTAGGTGACTATAATTGAAAATCATTCAAAGTTTTGACATGAGTTATCTTAAAGGTATACTTTATTGCTTCTTGTTGGATCTTCCTTCAAAGTATGAAATGAACTTACGCTATGTCAGCTGCTTCTTACACATTATCTTTGGAAATAGTTATTACTTTTTCGGCCAGTAGAAAATTGGTTGCTCTTTTAACACTCTGGAAAAGAAGAAAGAAGAAAGGAAAAAGGTGAAGTATATACATCTAAAATATGG--TTGTCTGTAGCAAGACATTGGGCTCTATTATATTT</genome_strand>
        <mrna_strand>ATACCCAACAACTTAAGGAGTTCTTGGATCGTATCATTACTGCTGGTGCGGAGGTTTTACTCGTCATGAATGATAAACGATGAGTTCTCCAGCAGTTTGATTTCCTTTTTTGAATTGAGCTGTTTGAAGCACAATGGATGGTACATGTTGCACTATGAAGACTTTAGCCCAAGTTTGCTATTAATACATACCCTGGGCACATGATGTGAATTTGATTGATTGTTTTGAAAGTTATCTTAAACCCTATCTAGGTGACTATAATTGAAAATCATTCAAAGTTTTGACTTGAGTTATCTTAAAGGTATACTTTATTGCTTCTTGTTGGATCTTCCTTCAAAGTATGAAATGAACTTACGCTATTTCAGCTGCTTCTTACACATTATCTTTGGAAATAGTCATTACTTTTTCGGCCAGTAGAAAATTGGTTGCTCTTTTAACACTCTGGAAAAGAAGAAAGAAGAAAGGAAAAAGGTGAAGTATATACATCTAAAATATGGTTTTGTCTGTAGCAAGACATTGGGCTCTATTATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0190C13-GF7tz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0190C13-GF7tz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0190C13.1" temp_strand="-" temp_description="C00HBa0190C13.1  CU210847.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0190C13 sequenced_by:sanger upload_account_name:uk">
        <position start="125856" stop="124541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125556" g_stop="124841" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0190C13.1" gen_strand="-" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0190C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125556" e_stop="124841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGATCTTCGTTTCAAAATACTTCTACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACCTGCATGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCATAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACATTCACAGGCACAACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTT-TTCGCTCAAAATCTCCGCTTTCAGCTCTGGACAGATTTCCTGCAAAACAAAAAGAAACTTATGTCAAAATTAGCACAAAAAAGGCTTTTGGACACATTAAACTTAAGGAAAAAGTATTAATTATACCATGAAACCACGGTATATCAATACCCTCAACTTAAATTCATTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATTCGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCAC-AAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0190C13-GF7tz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243969" ref_strand="+" ref_description="SGN-E243969 [cLEE-1-A19]">
      <seq>ggaaatctgccaaaacgcggcttggtcgacggaccacgcgacggaccgtcgtggactctgtcgtcccatacttggtgcaatttcttctgctgctttcttcattcccctcgacggcaagtgtaacggaccgtcataggtacaacggtctgtcgagggtcttcgtttcaaaatacttcaactcttggaatctgggtactgggatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaagcttcgtaatcccacacttggtcagacttccccatcttccttcagcagcttctctacgctaccacctacggaccgtcacaagcacgacagaccttcaaaagctccgtaggtggtctcttctgcatttttttgctcaaaatctccgctttcagcttttgacagatttcctgcaaaacaaagagaaacttatatcaaaattagcacaaaaaaggctttcggacactttaaacttaaggcaaaagtattaattatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0190C13-GF7tz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0190C13.1" temp_strand="-" temp_description="C00HBa0190C13.1  CU210847.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0190C13 sequenced_by:sanger upload_account_name:uk">
        <position start="126025" stop="115344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125725" g_stop="125186" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0190C13.1" gen_strand="-" ref_id="SGN-E243969" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.034" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0190C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125725" e_stop="125186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATCTGCCAAAACGCGGCTGGGTCGACGGACCACGCGAAGGACCGTCGTGATCACAACGGACCATCGTGGACTCCGTCGTCCCATACTTGGTGCAATTTCTTTTGCTGCTTTCTTCATTCCCCTCGACGGCAAGTGTGACGGACCGTCATAGGCACAACGGTCTGTCGAGGATCTTCGTTTCAAAATACTTCTACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACCTGCATGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCATAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACATTCACAGGCACAACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCA-TTTTTCGCTCAAAATCTCCGCTTTCAGCTCTGGACAGATTTCCTGCAAAACAAAAAGAAACTTATGTCAAAATTAGCACAAAAAAGGCTTTTGGACACATTAAACTTAAGGAAAAAGTATTAATTATACC</genome_strand>
        <mrna_strand>GGAAATCTGCCAAAACGCGGCTTGGTCGACGGACCACGC----GA----CG-GA-C-C----G----TCGTGGACTCTGTCGTCCCATACTTGGTGCAATTTCTTCTGCTGCTTTCTTCATTCCCCTCGACGGCAAGTGTAACGGACCGTCATAGGTACAACGGTCTGTCGAGGGTCTTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTACCACCTACGGACCGTCACAAGCACGACAGACCTTCAAAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTTGCTCAAAATCTCCGCTTTCAGCTTTTGACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAAGGCTTTCGGACACTTTAAACTTAAGGCAAAAGTATTAATTATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="40783" PGL_stop="41442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40783" e_stop="41314"/>
            <exon e_start="41397" e_stop="41442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.837" e_score="0.985"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="40783" e_stop="41314" e_length="532"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.837">
            <gDNA_intron_boundary i_start="41315" i_stop="41396" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41397" e_stop="41442" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40783" stop="41314"/>
              <exon start="41397" stop="41442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40784" stop="41307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356491" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCCAACTGAAACTGAAATATCAACCAATCAATCCCCTTCCACTACAGCTGTCTGGTGGTGCTATGAGTGGCAAAGCATTTCTTCTCTCCCACTACAGCTTTTCTCCTCCCAATATACCTCGAACAAATTTCAATGTTCATAATTCATTTTACCATACTAGTGAAAGTGGAAGTGGAAGAGGAAGAGGAAGAGGTCGATTTGGATATGGGCAAAGAGAGTTATTATTAGTTAAGAGGAATAGTAGTAGTCGGAAGTTGTGGGCTGATGTCAAGTCAAAACCCTTCAAAATTGCAGAGGATGATGCTTTATTGAGAAAGAAAGAAGATGGAGATAACTCAGTGGGTCTACCGCAAGAGTTTCCAAAGCGTTGGGTTATTGTCATTCTTTGTTTCTCCGCTTTTCTTCTTTGTAATATGGATAGAGTTAATATGAGTATCGCTATACTTCCCATGGCATCCGAATATAACTGGACTCCTATTACTGTTGGTTTAATACAATCTTCATTTTTCTGGGGTTATCTTCTTACTCAG : ATAGCAGGAGGTATATGGGCAGACACTGTTGGTGGCAAGGCTGTCT</gDNA_template>
            <first_frame> V  P  T  E  T  E  I  S  T  N  Q  S  P  S  T  T  A  V  W  W  C  Y  E  W  Q  S  I  S  S  L  P  L  Q  L  F  S  S  Q  Y  T  S  N  K  F  Q  C  S  *  F  I  L  P  Y  *  *  K  W  K  W  K  R  K  R  K  R  S  I  W  I  W  A  K  R  V  I  I  S  *  E  E  *  *  *  S  E  V  V  G  *  C  Q  V  K  T  L  Q  N  C  R  G  *  C  F  I  E  K  E  R  R  W  R  *  L  S  G  S  T  A  R  V  S  K  A  L  G  Y  C  H  S  L  F  L  R  F  S  S  L  *  Y  G  *  S  *  Y  E  Y  R  Y  T  S  H  G  I  R  I  *  L  D  S  Y  Y  C  W  F  N  T  I  F  I  F  L  G  L  S  S  Y  S   : D  S  R  R  Y  M  G  R  H  C  W  W  Q  G  C   </first_frame>
            <second_frame>  F  Q  L  K  L  K  Y  Q  P  I  N  P  L  P  L  Q  L  S  G  G  A  M  S  G  K  A  F  L  L  S  H  Y  S  F  S  P  P  N  I  P  R  T  N  F  N  V  H  N  S  F  Y  H  T  S  E  S  G  S  G  R  G  R  G  R  G  R  F  G  Y  G  Q  R  E  L  L  L  V  K  R  N  S  S  S  R  K  L  W  A  D  V  K  S  K  P  F  K  I  A  E  D  D  A  L  L  R  K  K  E  D  G  D  N  S  V  G  L  P  Q  E  F  P  K  R  W  V  I  V  I  L  C  F  S  A  F  L  L  C  N  M  D  R  V  N  M  S  I  A  I  L  P  M  A  S  E  Y  N  W  T  P  I  T  V  G  L  I  Q  S  S  F  F  W  G  Y  L  L  T  Q  :  I  A  G  G  I  W  A  D  T  V  G  G  K  A  V  </second_frame>
            <third_frame>   S  N  *  N  *  N  I  N  Q  S  I  P  F  H  Y  S  C  L  V  V  L  *  V  A  K  H  F  F  S  P  T  T  A  F  L  L  P  I  Y  L  E  Q  I  S  M  F  I  I  H  F  T  I  L  V  K  V  E  V  E  E  E  E  E  E  V  D  L  D  M  G  K  E  S  Y  Y  *  L  R  G  I  V  V  V  G  S  C  G  L  M  S  S  Q  N  P  S  K  L  Q  R  M  M  L  Y  *  E  R  K  K  M  E  I  T  Q  W  V  Y  R  K  S  F  Q  S  V  G  L  L  S  F  F  V  S  P  L  F  F  F  V  I  W  I  E  L  I  *  V  S  L  Y  F  P  W  H  P  N  I  T  G  L  L  L  L  L  V  *  Y  N  L  H  F  S  G  V  I  F  L  L  R :   *  Q  E  V  Y  G  Q  T  L  L  V  A  R  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0190C13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40784" stop="41314"/>
                    <exon start="41397" stop="41441"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQLKLKYQPINPLPLQLSGGAMSGKAFLLSHYSFSPPNIPRTNFNVHNSFYHTSESGSGRGRGRGRFGYGQRELLLVKRNSSSRKLWADVKSKPFKIAEDDALLRKKEDGDNSVGLPQEFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMASEYNWTPITVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="44004" PGL_stop="46061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44004" e_stop="44105"/>
            <exon e_start="44437" e_stop="44502"/>
            <exon e_start="44706" e_stop="44790"/>
            <exon e_start="45552" e_stop="46061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.828" acc_prob="0.880" e_score="0.980"/>
          <exon-intron don_prob="0.945" acc_prob="0.998" e_score="0.985"/>
          <exon-intron don_prob="0.922" acc_prob="0.869" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="44004" e_stop="44105" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.828" acc_prob="0.880">
            <gDNA_intron_boundary i_start="44106" i_stop="44436" i_length="331"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="44437" e_stop="44502" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44503" i_stop="44705" i_length="203"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44706" e_stop="44790" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.922" acc_prob="0.869">
            <gDNA_intron_boundary i_start="44791" i_stop="45551" i_length="761"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="45552" e_stop="46061" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44004" stop="44105"/>
              <exon start="44437" stop="44502"/>
              <exon start="44706" stop="44790"/>
              <exon start="45552" stop="46061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATGCAAACAATAGGATTTCTTGGACCTGCTTTCTTTTTAACCCAGTTGAGCCGTGTTGACTCTCCAGCAATGGCAGTTCTCTGTATGGCATGCAGTCAG : GGAAGTGATGCTTTTTCACAATCTGGTTTGTATTCAAACCATCAGGATATTGCTCCACGGTATTCT : GGTGTACTCCTTGGACTATCCAATACTGCTGGGGTTCTAGCTGGTGTTTTTGGCACAGCAGCAACTGGTTACATCTTGCAACATG : GTTCTTGGGATGATGTGTTTAAAGTTTCAGTTGGGCTTTACTTGGTTGGAACAGTAGTTTGGAATGCCTTTTCAACTGGTGAGAAGATCATTGATTGACACTTGGAGACAGCAAACTTAAGCCCTTGGTGTTATAGTGGATATGCATGTGGTGCAATCAGGAAGGCGTGATTGATTAAGAATTGGAGATGAAAAGAGATTTAGTTGAGAATAGAATAGGCAGGAGTATCTTTGGCAGTAAATCAGAAAATGAGGGAACAGATGTCTTTGACACTGGATTGATTTAAACAAGGAGACTCCCAAGATTTCCACGAAGATACCAGAGTATTGTTGGAGTTTGATTGAACAACCAAATGAACAAGGATACATGATTGACATAGCTTGTAAATCTGTGTAAAGTTACTAATCCAATCCCTGCAGACTGCAGTAATATAGGTAAAACAGTTTTAATATCTTATTAATGTTTTGTAAGAATTAAGGGCTCTTATTAGTATTTAATTGCACTGACAAA</gDNA_template>
            <first_frame> I  M  Q  T  I  G  F  L  G  P  A  F  F  L  T  Q  L  S  R  V  D  S  P  A  M  A  V  L  C  M  A  C  S  Q  :  G  S  D  A  F  S  Q  S  G  L  Y  S  N  H  Q  D  I  A  P  R  Y  S  :  G  V  L  L  G  L  S  N  T  A  G  V  L  A  G  V  F  G  T  A  A  T  G  Y  I  L  Q  H   : G  S  W  D  D  V  F  K  V  S  V  G  L  Y  L  V  G  T  V  V  W  N  A  F  S  T  G  E  K  I  I  D  *  H  L  E  T  A  N  L  S  P  W  C  Y  S  G  Y  A  C  G  A  I  R  K  A  *  L  I  K  N  W  R  *  K  E  I  *  L  R  I  E  *  A  G  V  S  L  A  V  N  Q  K  M  R  E  Q  M  S  L  T  L  D  *  F  K  Q  G  D  S  Q  D  F  H  E  D  T  R  V  L  L  E  F  D  *  T  T  K  *  T  R  I  H  D  *  H  S  L  *  I  C  V  K  L  L  I  Q  S  L  Q  T  A  V  I  *  V  K  Q  F  *  Y  L  I  N  V  L  *  E  L  R  A  L  I  S  I  *  L  H  *  Q  </first_frame>
            <second_frame>  S  C  K  Q  *  D  F  L  D  L  L  S  F  *  P  S  *  A  V  L  T  L  Q  Q  W  Q  F  S  V  W  H  A  V  R :   E  V  M  L  F  H  N  L  V  C  I  Q  T  I  R  I  L  L  H  G  I  L :   V  Y  S  L  D  Y  P  I  L  L  G  F  *  L  V  F  L  A  Q  Q  Q  L  V  T  S  C  N  M  :  V  L  G  M  M  C  L  K  F  Q  L  G  F  T  W  L  E  Q  *  F  G  M  P  F  Q  L  V  R  R  S  L  I  D  T  W  R  Q  Q  T  *  A  L  G  V  I  V  D  M  H  V  V  Q  S  G  R  R  D  *  L  R  I  G  D  E  K  R  F  S  *  E  *  N  R  Q  E  Y  L  W  Q  *  I  R  K  *  G  N  R  C  L  *  H  W  I  D  L  N  K  E  T  P  K  I  S  T  K  I  P  E  Y  C  W  S  L  I  E  Q  P  N  E  Q  G  Y  M  I  D  I  A  C  K  S  V  *  S  Y  *  S  N  P  C  R  L  Q  *  Y  R  *  N  S  F  N  I  L  L  M  F  C  K  N  *  G  L  L  L  V  F  N  C  T  D  K </second_frame>
            <third_frame>   H  A  N  N  R  I  S  W  T  C  F  L  F  N  P  V  E  P  C  *  L  S  S  N  G  S  S  L  Y  G  M  Q  S   : G  K  *  C  F  F  T  I  W  F  V  F  K  P  S  G  Y  C  S  T  V  F   : W  C  T  P  W  T  I  Q  Y  C  W  G  S  S  W  C  F  W  H  S  S  N  W  L  H  L  A  T  W :   F  L  G  *  C  V  *  S  F  S  W  A  L  L  G  W  N  S  S  L  E  C  L  F  N  W  *  E  D  H  *  L  T  L  G  D  S  K  L  K  P  L  V  L  *  W  I  C  M  W  C  N  Q  E  G  V  I  D  *  E  L  E  M  K  R  D  L  V  E  N  R  I  G  R  S  I  F  G  S  K  S  E  N  E  G  T  D  V  F  D  T  G  L  I  *  T  R  R  L  P  R  F  P  R  R  Y  Q  S  I  V  G  V  *  L  N  N  Q  M  N  K  D  T  *  L  T  *  L  V  N  L  C  K  V  T  N  P  I  P  A  D  C  S  N  I  G  K  T  V  L  I  S  Y  *  C  F  V  R  I  K  G  S  Y  *  Y  L  I  A  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0190C13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44004" stop="44105"/>
                    <exon start="44437" stop="44502"/>
                    <exon start="44706" stop="44790"/>
                    <exon start="45552" stop="45649"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMQTIGFLGPAFFLTQLSRVDSPAMAVLCMACSQGSDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNAFSTGEKIID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="51370" PGL_stop="50839"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51370" e_stop="50839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="51370" e_stop="50839" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51370" stop="50839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306608" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACCCAACAACTTAGGGAGTTCTTGGATCGTATCATTACTGCTGGTGCGGAGGTTTTACTCGTCATGAATGATAAACGATGAGTTCTCCAGCAGTTTGATTTGCTTTTTTGACTTGAGCTGTTTGAAGCACAATGGATGGTACATGTTGCACTATGAAGACTTTAGCCCAAGTTTGCTATTAATACATACCCTGGGCACATGATGTGAATTTGATTGATTGTTTTGAAAGTTATCTTAAACCCTATCTAGGTGACTATAATTGAAAATCATTCAAAGTTTTGACATGAGTTATCTTAAAGGTATACTTTATTGCTTCTTGTTGGATCTTCCTTCAAAGTATGAAATGAACTTACGCTATGTCAGCTGCTTCTTACACATTATCTTTGGAAATAGTTATTACTTTTTCGGCCAGTAGAAAATTGGTTGCTCTTTTAACACTCTGGAAAAGAAGAAAGAAGAAAGGAAAAAGGTGAAGTATATACATCTAAAATATGGTTGTCTGTAGCAAGACATTGGGCTCTATTATATTT</gDNA_template>
            <first_frame> I  P  N  N  L  G  S  S  W  I  V  S  L  L  L  V  R  R  F  Y  S  S  *  M  I  N  D  E  F  S  S  S  L  I  C  F  F  D  L  S  C  L  K  H  N  G  W  Y  M  L  H  Y  E  D  F  S  P  S  L  L  L  I  H  T  L  G  T  *  C  E  F  D  *  L  F  *  K  L  S  *  T  L  S  R  *  L  *  L  K  I  I  Q  S  F  D  M  S  Y  L  K  G  I  L  Y  C  F  L  L  D  L  P  S  K  Y  E  M  N  L  R  Y  V  S  C  F  L  H  I  I  F  G  N  S  Y  Y  F  F  G  Q  *  K  I  G  C  S  F  N  T  L  E  K  K  K  E  E  R  K  K  V  K  Y  I  H  L  K  Y  G  C  L  *  Q  D  I  G  L  Y  Y  I  </first_frame>
            <second_frame>  Y  P  T  T  *  G  V  L  G  S  Y  H  Y  C  W  C  G  G  F  T  R  H  E  *  *  T  M  S  S  P  A  V  *  F  A  F  L  T  *  A  V  *  S  T  M  D  G  T  C  C  T  M  K  T  L  A  Q  V  C  Y  *  Y  I  P  W  A  H  D  V  N  L  I  D  C  F  E  S  Y  L  K  P  Y  L  G  D  Y  N  *  K  S  F  K  V  L  T  *  V  I  L  K  V  Y  F  I  A  S  C  W  I  F  L  Q  S  M  K  *  T  Y  A  M  S  A  A  S  Y  T  L  S  L  E  I  V  I  T  F  S  A  S  R  K  L  V  A  L  L  T  L  W  K  R  R  K  K  K  G  K  R  *  S  I  Y  I  *  N  M  V  V  C  S  K  T  L  G  S  I  I  F </second_frame>
            <third_frame>   T  Q  Q  L  R  E  F  L  D  R  I  I  T  A  G  A  E  V  L  L  V  M  N  D  K  R  *  V  L  Q  Q  F  D  L  L  F  *  L  E  L  F  E  A  Q  W  M  V  H  V  A  L  *  R  L  *  P  K  F  A  I  N  T  Y  P  G  H  M  M  *  I  *  L  I  V  L  K  V  I  L  N  P  I  *  V  T  I  I  E  N  H  S  K  F  *  H  E  L  S  *  R  Y  T  L  L  L  L  V  G  S  S  F  K  V  *  N  E  L  T  L  C  Q  L  L  L  T  H  Y  L  W  K  *  L  L  L  F  R  P  V  E  N  W  L  L  F  *  H  S  G  K  E  E  R  R  K  E  K  G  E  V  Y  T  S  K  I  W  L  S  V  A  R  H  W  A  L  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0190C13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="125725" PGL_stop="124841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125725" e_stop="124841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="125725" e_stop="124841" e_length="885"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125725" stop="125186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125556" stop="124841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAATCTGCCAAAACGCGGCTGGGTCGACGGACCACGCGAAGGACCGTCGTGATCACAACGGACCATCGTGGACTCCGTCGTCCCATACTTGGTGCAATTTCTTTTGCTGCTTTCTTCATTCCCCTCGACGGCAAGTGTGACGGACCGTCATAGGCACAACGGTCTGTCGAGGATCTTCGTTTCAAAATACTTCTACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACCTGCATGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCATAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACATTCACAGGCACAACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTCGCTCAAAATCTCCGCTTTCAGCTCTGGACAGATTTCCTGCAAAACAAAAAGAAACTTATGTCAAAATTAGCACAAAAAAGGCTTTTGGACACATTAAACTTAAGGAAAAAGTATTAATTATACCATGAAACCACGGTATATCAATACCCTCAACTTAAATTCATTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATTCGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> G  N  L  P  K  R  G  W  V  D  G  P  R  E  G  P  S  *  S  Q  R  T  I  V  D  S  V  V  P  Y  L  V  Q  F  L  L  L  L  S  S  F  P  S  T  A  S  V  T  D  R  H  R  H  N  G  L  S  R  I  F  V  S  K  Y  F  Y  S  W  N  L  G  T  G  I  T  S  L  I  F  T  T  N  L  H  D  G  P  S  *  P  *  R  T  V  T  S  F  I  I  P  H  L  V  R  L  P  H  L  P  S  A  A  A  L  R  C  H  L  R  T  F  T  G  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  S  L  K  I  S  A  F  S  S  G  Q  I  S  C  K  T  K  R  N  L  C  Q  N  *  H  K  K  G  F  W  T  H  *  T  *  G  K  S  I  N  Y  T  M  K  P  R  Y  I  N  T  L  N  L  N  S  L  F  V  L  K  R  R  T  M  T  H  Y  T  I  F  V  Q  *  Y  S  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  I  L  W  D  S  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  P  R  C  *  Q  F  R  Y  C  N  *  C  P  H  F  R  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </first_frame>
            <second_frame>  E  I  C  Q  N  A  A  G  S  T  D  H  A  K  D  R  R  D  H  N  G  P  S  W  T  P  S  S  H  T  W  C  N  F  F  C  C  F  L  H  S  P  R  R  Q  V  *  R  T  V  I  G  T  T  V  C  R  G  S  S  F  Q  N  T  S  T  L  G  I  W  V  L  G  S  L  L  *  S  S  R  R  T  C  M  T  D  R  H  S  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  H  S  Q  A  Q  R  T  V  I  S  S  V  G  G  L  F  C  I  F  R  S  K  S  P  L  S  A  L  D  R  F  P  A  K  Q  K  E  T  Y  V  K  I  S  T  K  K  A  F  G  H  I  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  I  P  S  T  *  I  H  C  L  S  S  S  D  A  L  *  L  T  T  Q  S  L  Y  N  S  I  H  V  L  S  F  A  I  I  W  L  S  I  P  I  N  L  I  K  S  M  H  A  I  T  I  R  L  E  F  C  G  I  R  T  *  H  R  L  T  M  H  *  H  L  S  S  S  I  S  H  R  G  A  N  N  S  G  I  A  T  S  V  L  T  L  E  Q  N  P  H  F  S  H  N  D  F  S  L  S  I  R  I   </second_frame>
            <third_frame>   K  S  A  K  T  R  L  G  R  R  T  T  R  R  T  V  V  I  T  T  D  H  R  G  L  R  R  P  I  L  G  A  I  S  F  A  A  F  F  I  P  L  D  G  K  C  D  G  P  S  *  A  Q  R  S  V  E  D  L  R  F  K  I  L  L  L  L  E  F  G  Y  W  D  H  F  S  D  L  H  D  E  P  A  *  R  T  V  I  A  M  T  D  R  H  K  L  H  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  C  T  T  L  P  P  T  D  I  H  R  H  N  G  P  S  *  A  P  *  V  V  S  S  A  F  F  A  Q  N  L  R  F  Q  L  W  T  D  F  L  Q  N  K  K  K  L  M  S  K  L  A  Q  K  R  L  L  D  T  L  N  L  R  K  K  Y  *  L  Y  H  E  T  T  V  Y  Q  Y  P  Q  L  K  F  I  V  C  P  Q  A  T  H  Y  D  S  L  H  N  L  C  T  I  V  F  M  F  Y  P  L  Q  S  F  G  Y  Q  S  R  L  I  S  S  N  L  C  M  L  S  L  L  G  L  N  F  V  G  F  E  H  D  T  D  S  P  C  T  N  T  Y  P  L  Q  F  L  T  E  V  L  T  I  P  V  L  Q  L  V  S  S  L  *  N  K  I  L  I  F  H  T  M  I  S  V  *  V  *  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0190C13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125192" stop="124893"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYHETTVYQYPQLKFIVCPQATHYDSLHNLCTIVFMFYPLQSFGYQSRLISSNLCMLSLLGLNFVGFEHDTDSPCTNTYPLQFLTEVLTIPVLQLVSSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0190C13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125430" stop="125182"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTWSDFPIFLQQLHYAATYGHSQAQRTVISSVGGLFCIFRSKSPLSALDRFPAKQKETYVKISTKKAFGHIKLKEKVLIIP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0190C13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125671" stop="125459"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQRTIVDSVVPYLVQFLLLLSSFPSTASVTDRHRHNGLSRIFVSKYFYSWNLGTGITSLIFTTNLHDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0190C13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125452" stop="125240"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTVTSFIIPHLVRLPHLPSAAALRCHLRTFTGTTDRHKLRRWSLLHFSLKISAFSSGQISCKTKRNLCQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 260 chains have been computed
$ 
$ memory statistics:
$ 31152 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 5192 bytes was the average size of a spliced alignment
$ 9184 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2296 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 297 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:57:36
-->
