<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:57:34"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555197" ref_strand="+" ref_description="SGN-E555197 [cTSC-6-L20]">
      <seq>aaaagactcatcgtgtgctcattgtcgaggaatgcatgcgcacaggaggtattggggccagcttgacagccgctataactgagaactttcacgactatctagatgccccaatcgtatgtctgtcgtcacaggatgtgccaaccccttatgctgggacgttagagaattggactgttgtccaacctccccagattgttactgcagttgaacaactttgccagtgatcaagtggtagaagttttatgataatcatgccattatgttcagttgcttatgtcataatttaaggctcaacttctgatcgatttttattgtctgattttgctagagattttattttttggaacttgggagtcctagttaaggtgagatgtttgttgttttgccttctacccacaccaaaatggtgcttggaatcgttatgtactggtaaggtaactagacttcatagaaacattatcattgttttgtttcgttaaagataaagatttaggtctattttataatcaaagctggagttgtcctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="29556" stop="28429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29256" g_stop="28710" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E555197" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29256" e_stop="28710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAGCTGGAGTTGTCCTACATTGCTAAAAGTATTAAATT</genome_strand>
        <mrna_strand>AAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAGCTGGAGTTGTCCTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545427" ref_strand="+" ref_description="SGN-E545427 [TUS-68-E9](-)">
      <seq>ctgaatctgaagaagcagagatggtacgacctggggagcatgtaaccattctaacttattccaggatgaggtatcatgtaatgcaggctgccaagacacttgtgaacaagggttatgatcccgaggtcattgatattaggtctctgaaaccatttgatctttacaccatcgggaagtcagtgaaaaagactcatcgtgtgctcattgtcgaggaatgcatgcgcacaggaggtattggggccagcttgacagccgctataactgagaactttcacgactatctagatgccccaatcgtatgtctgtcgtcacaggatgtgccaaccccttatgctgggacgttagagaattggactgttgtccaacctccccagattgttactgcagttgaacaactttgccagtgatcaagtggtagaagttttatgataatcatgccattatgttcagttgcttatgtcataatttaaggctcaacttctgatcgatttttattgtctgattttgctagagattttattttttggaacttgggagtcctagttaaggtgagatgtttgttgttttgccttctacccacaccaaaatggtgcttggaatcgttatgtactggtaaggtaactagacttcatagaaacattatcattgttttgtttcgttaaagataaagatttaggtctattttataatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="29740" stop="28446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29440" g_stop="28738" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E545427" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29440" e_stop="28738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAGCTGGAGT</genome_strand>
        <mrna_strand>CTGAATC-TGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545428" ref_strand="+" ref_description="SGN-E545428 [TUS-68-E9]">
      <seq>ctgaatcttgaagaagcagagatggtacgacctggggagcatgtaaccattctaacttattccaggatgaggtatcatgtaatgcaggctgccaagacacttgtgaacaagggttatgatcccgaggtcattgatattaggtctctgaaaccatttgatctttacaccatcgggaagtcagtgaaaaagactcatcgtgtgctcattgtcgaggaatgcatgcgcacaggaggtattggggccagcttgacagccgctataactgagaactttcacgactatctagatgccccaatcgtatgtctgtcgtcacaggatgtgccaaccccttatgctgggacgttagagaattggactgttgtccaacctccccagattgttactgcagttgaacaactttgccagtgatcaagtggtagaagttttatgataatcatgccattatgttcagttgcttatgtcataatttaaggctcaacttctgatcgatttttattgtctgattttgctagagattttattttttggaacttgggagtcctagttaaggtgagatgtttgttgttttgccttctacccacaccaaaatggtgcttggaatcgttatgtactggtaaggtaactagacttcatagaaacattatcattgttttgttttcgttaagataaagatttaggtctattttataatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="29740" stop="28446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29440" g_stop="28739" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E545428" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29440" e_stop="28739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAGCTGGAG</genome_strand>
        <mrna_strand>CTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTTCGTTAAGATAAAGATTTAGGTCTATTTTATAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733586" ref_strand="+" ref_description="SGN-E733586 [LB10BF08]">
      <seq>ctcatcgtgtgctcattgtcgaggaatgcatgcgcacaggaggtattggggccagcttgacagccgctataactgagaactttcacgactatctagatgccccaatcgtatgtctgtcgtcacaggatgtgccaaccccttatgctgggacgttagagaattggactgttgtccaacctccccagattgttactgcagttgaacaactttgccagtgatcaagtggtagaagttttatgataatcatgccattatgttcagttgcttatgtcataatttaaggctcaacttctgatcgatttttattgtctgattttgctagagattttattttttggaacttgggagtcctagttaaggtgagatgtttgttgttttgccttctacccacaccaaaatggtgcttggaatcgttatgtactggtaaggtaactagacttcatagaaacattatcattgttttgtttcgttaaagataaagatttaggtctattttataatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="29550" stop="28446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29250" g_stop="28739" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E733586" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29250" e_stop="28739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAGCTGGAG</genome_strand>
        <mrna_strand>CTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283366" ref_strand="+" ref_description="SGN-E283366 [cLER-12-O13]">
      <seq>gcaggctgccaagacacttgtgaacaagggttatgatcccgaggtcattgatattaggtctctgaaaccatttgatctttacaccatcgggaagtcagtgaaaaagactcatcgtgtgctcattgtcgaggaatgcatgcgcacaggaggtattggggccagcttgacagccgctataactgagaactttcacgactatctagatgccccaatcgtatgtctgtcgtcacaggatgtgccaaccccttatgctgggacgttagagaattggactgttgtccaacctccccagattgttactgcagttgaacaactttgccagtgatcaagtggtagaagttttatgataatcatgccattatgttcagttgcttatgtcataatttaaggctcaacttctgatcgatttttattgtctgattttgctagagattttattttttggaacttgggagtcctagttaaggtgagatgtttgttgttttgccttctacccacaccaaaatggtgcttggaatcgttatgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="29657" stop="28529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29357" g_stop="28829" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E283366" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29357" e_stop="28829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACT</genome_strand>
        <mrna_strand>GCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689795" ref_strand="+" ref_description="SGN-E689795 [LH_Ea01N09]">
      <seq>ccgtccgaggtcctggtggagttggtcgacagcttggagcggagcactctcaacgccttgagtcatatttccagtcaattcctggaatccaaatggttgcctgttcaaccccctacaacgccaagggcctgatgaaggctgctatcagaagtgataaccctgtgattctttttgagcatgttttgctctacaacctcaaggagagaattccagacgaagagtatgtgttgaatcttgaagaagcagagatggtacgccctggtgagcatgttaccattctaacttattccaggatgaggtatcatgtcatgcaagctgctaagacactcgtgaacaagggttatgatcccgaggtcattgatatcaggtcactgaaaccatttgaccttcacaccatcgggaattcagtgaagaagactcatcgtgtcctcattgtcgaggaatgtatgcgtacaggaggaattggtgccagcttgacagctgctataactgagaacttccatgactatctcgatgccccaatcatatgtctgtcctcacaggatgtgccaacgccatatgctgggacgttagagaactggaccgttgtccaacctccccagattgttactgcagtacaacagctctgccagtgattgttactagacattgtagtttttggaacttacattttctagttaaggtgagatgattggtccattgttgtctacctgcaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="29966" stop="28578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29667" g_stop="29037" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29036" i_stop="28942" i_length="95">
            <donor d_prob="0.307" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28941" g_stop="28854" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="720" r_length="89" r_score="0.739"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E689795" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29667" e_stop="29037"/>
          <exon e_start="28941" e_stop="28854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATT-TTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAA</genome_strand>
        <mrna_strand>CCGTCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCGGAGCACTCTCAACGCCTTGAGTCATATTTCCAGTCAATTCCTGGAATCCAAATGGTTGCCTGTTCAACCCCCTACAACGCCAAGGGCCTGATGAAGGCTGCTATCAGAAGTGATAACCCTGTGATTCTTTTTGAGCATGTTTTGCTCTACAACCTCAAGGAGAGAATTCCAGACGAAGAGTATGTGTTGAATCTTGAAGAAGCAGAGATGGTACGCCCTGGTGAGCATGTTACCATTCTAACTTATTCCAGGATGAGGTATCATGTCATGCAAGCTGCTAAGACACTCGTGAACAAGGGTTATGATCCCGAGGTCATTGATATCAGGTCACTGAAACCATTTGACCTTCACACCATCGGGAATTCAGTGAAGAAGACTCATCGTGTCCTCATTGTCGAGGAATGTATGCGTACAGGAGGAATTGGTGCCAGCTTGACAGCTGCTATAACTGAGAACTTCCATGACTATCTCGATGCCCCAATCATATGTCTGTCCTCACAGGATGTGCCAACGCCATATGCTGGGACGTTAGAGAACTGGACCGTTGTCCAACCTCCCCAGATTGTTACTGCAGTACAACAGCTCTGCCA...............................................................................................GTGATTGTTACTAGACATTGTAGTTTTTGGAACTTACATTTTCTAGTTAAGGTGAGATGATTGGTCCATTGTTGTCTACCTGCACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308696" ref_strand="+" ref_description="SGN-E308696 [cLEZ-13-O5]">
      <seq>tgaatcttgaagaagcagagatggtacgacctggggagcatgtaaccattctaacttattccaggatgaggtatcatgtaatgcaggctgccaagacacttgtgaacaagggttatgatcccgaggtcattgatattaggtctctgaaaccatttgatctttacaccatcgggaagtcagtgaaaaagactcatcgtgtgctcattgtcgaggaatgcatgcgcacaggaggtattggggccagcttgacagccgctataactgagaactttcacgactatctagatgccccaatcgtatgtctgtcgtcacaggatgtgccaaccccttatgctgggacgttagagaattggactgttgtccaacctccccagattgttactgcagttgaacaactttgccagtgatcaagtggtagaagttttatgataatcatgccattatgttcagttgcttatgtcataatttaaggctcaacttctgatcgatttttattgtctgattttgctagagattttattttttggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="29739" stop="28610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29439" g_stop="28910" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E308696" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29439" e_stop="28910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAAC</genome_strand>
        <mrna_strand>TGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708277" ref_strand="+" ref_description="SGN-E708277 [FA35BC12]">
      <seq>cggatagggatcccgctgtttgtgtaatgggtgaagatgtcggtcattatggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgacactcccattgctgagaactctttcactggtatgggcattggagctgcaatgaccggtttgcgtccagttattgagggaatgaacatgggatttcttcttctagcctttaatcaaatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagtcgtcatccgaggtcctggtggagttggtcgacagcttggagcggagcactctcaacgccttgagtcatatttccagtcaattcctggaatccaaatggttgcctgttcaaccccctacaacgccaagggcttgatgaaggctgctatcagaagtgataaccctgtgattctttttgagcatgttttgctctacaacctcaaggagagaattccagacgaagagtatgtgttgaatcttgaagaagcagagatggtacgccctggtgagcatgttaccattctaacttattccaggatgaggtatcatgtcatgcaagctgctaagacactcgtgaacaagggttatgatcccgaggtcattgatatcaggtcactgaaaccgtttgaccttcacaccatcgggaattcagtgaagaagactcatcgcgtcctcattgtcgaggaatgtatgcgtacaggaggtattggtgccagcttgacagctgctataaccgagaacttccatgactatctcgatgccccaatcatatgtctgtcctcacaggatgtgccaacgccatatgctggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="30254" stop="28801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29955" g_stop="29101" g_length="855"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E708277" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29955" e_stop="29101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGA</genome_strand>
        <mrna_strand>CGGATAGGGATCCCGCTGTTTGTGTAATGGGTGAAGATGTCGGTCATTATGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGACACTCCCATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACCGGTTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTAGCCTTTAATCAAATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTCGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCGGAGCACTCTCAACGCCTTGAGTCATATTTCCAGTCAATTCCTGGAATCCAAATGGTTGCCTGTTCAACCCCCTACAACGCCAAGGGCTTGATGAAGGCTGCTATCAGAAGTGATAACCCTGTGATTCTTTTTGAGCATGTTTTGCTCTACAACCTCAAGGAGAGAATTCCAGACGAAGAGTATGTGTTGAATCTTGAAGAAGCAGAGATGGTACGCCCTGGTGAGCATGTTACCATTCTAACTTATTCCAGGATGAGGTATCATGTCATGCAAGCTGCTAAGACACTCGTGAACAAGGGTTATGATCCCGAGGTCATTGATATCAGGTCACTGAAACCGTTTGACCTTCACACCATCGGGAATTCAGTGAAGAAGACTCATCGCGTCCTCATTGTCGAGGAATGTATGCGTACAGGAGGTATTGGTGCCAGCTTGACAGCTGCTATAACCGAGAACTTCCATGACTATCTCGATGCCCCAATCATATGTCTGTCCTCACAGGATGTGCCAACGCCATATGCTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256699" ref_strand="+" ref_description="SGN-E256699 [cLEG-40-L11]">
      <seq>gaatgaacatgggatttcttcttctagcctttaatcaaatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagccgtcatccgaggtcctggtggagttggtcgacagcttggagcggagcactctcaacgccttgagtcatatttccagtcaattcctggaatccaaatggttgcctgttcaaccccctacaacgccaagggcttgatgaaggctgctatcagaagtgataaccctgtgattctttttgagcatgttttgctctacaacctcaaggagagaattccagacgaagagtatgtgttgaatcttgaagaagcagagatggtacgccctggtgagcatgttaccattctaacttattccaggatgaggtatcatgtcatgcaagctgctaagacactcgtgaacaagggttatgatcccgaggtcattgatatcaggtcactgaaaccgtttgaccttcacaccatcgggaattcagtgaagaagactcatcgcgtcctcattgtcgaggaatgtatgcgtacaggaggtattggtgccagcttgacagctgctataaccgagaacttccatgactatctcgatgccccaatcatatgtctgtcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="30066" stop="28830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29766" g_stop="29130" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E256699" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29766" e_stop="29130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTC</genome_strand>
        <mrna_strand>GAATGAACATGGGATTTCTTCTTCTAGCCTTTAATCAAATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGCCGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCGGAGCACTCTCAACGCCTTGAGTCATATTTCCAGTCAATTCCTGGAATCCAAATGGTTGCCTGTTCAACCCCCTACAACGCCAAGGGCTTGATGAAGGCTGCTATCAGAAGTGATAACCCTGTGATTCTTTTTGAGCATGTTTTGCTCTACAACCTCAAGGAGAGAATTCCAGACGAAGAGTATGTGTTGAATCTTGAAGAAGCAGAGATGGTACGCCCTGGTGAGCATGTTACCATTCTAACTTATTCCAGGATGAGGTATCATGTCATGCAAGCTGCTAAGACACTCGTGAACAAGGGTTATGATCCCGAGGTCATTGATATCAGGTCACTGAAACCGTTTGACCTTCACACCATCGGGAATTCAGTGAAGAAGACTCATCGCGTCCTCATTGTCGAGGAATGTATGCGTACAGGAGGTATTGGTGCCAGCTTGACAGCTGCTATAACCGAGAACTTCCATGACTATCTCGATGCCCCAATCATATGTCTGTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730895" ref_strand="+" ref_description="SGN-E730895 [LA25CB06]">
      <seq>tgcaatgactggcttgcgtccagttattgagggaatgaacatgggatttcttcttctggccttcaaccagatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagttgtcatccgaggtcctggtggagttggtcgacagcttggagcagagcactctcaacgccttgagtcatacttccagtcaattcctggaatccagatggtcgcctgttcaaccccctacaatgctaagggcttgatgaaggcagctatcaaaagtgataaccctgtgattctgtttgagcatgttttgctctacaacctcaaggaaagaattccagatgaagagtatgtgctgaatcttgaagaagcagagatggtacgacctggggagcatgtaaccctctccacttattccaggatgaggtatcatgtaatgcaggctgccaagacacttgtgaacaaggcctatgatcccgaggtcattgatattaggtctctgaaaccatttgatctttacaccatcgggaagtcagtgaaaaagactcatcgtgtgctcattgtcgaggaatgcatgcgcacacgaggtattggggccagcttgacagccgctataactgaaaactttcacgactatctagatgccccaatcgtatgtctgtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="30098" stop="28831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29798" g_stop="29131" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E730895" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29798" e_stop="29131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGT</genome_strand>
        <mrna_strand>TGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCCTCTCCACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGCCTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACACGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAAAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262664" ref_strand="+" ref_description="SGN-E262664 [cLEG-63-C7]">
      <seq>gaatgaacatgggatttcttcttctagcctttaatcaaatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagccgtcatccgaggtcctggtggagttggtcgacagcttggagcggagcactctcaacgccttgagtcatatttccagtcaattcctggaatccaaatggttgcctgttcaaccccctacaacgccaagggcttgatgaaggctgctatcagaagtgataaccctgtgattctttttgagcatgttttgctctacaacctcaaggagagaattccagacgaagagtatgtgttgaatcttgaagaagcagagatggtacgccctggtgagcatgttaccattctaacttattccaggatgaggtatcatgtcatgcaagctgctaagacactcgtgaacaagggttatgatcccgaggtcattgatatcaggtcactgaaaccgtttgaccttcacaccatcgggaattcagtgaagaagactcatcgcgtcctcattgtcgaggaatgtatgcgtacaggaggtattggtgccagcttgacagctgctataaccgagaacttccatgactatctcgatgccccaatcatatgtctgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="30066" stop="28831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29766" g_stop="29131" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E262664" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29766" e_stop="29131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGT</genome_strand>
        <mrna_strand>GAATGAACATGGGATTTCTTCTTCTAGCCTTTAATCAAATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGCCGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCGGAGCACTCTCAACGCCTTGAGTCATATTTCCAGTCAATTCCTGGAATCCAAATGGTTGCCTGTTCAACCCCCTACAACGCCAAGGGCTTGATGAAGGCTGCTATCAGAAGTGATAACCCTGTGATTCTTTTTGAGCATGTTTTGCTCTACAACCTCAAGGAGAGAATTCCAGACGAAGAGTATGTGTTGAATCTTGAAGAAGCAGAGATGGTACGCCCTGGTGAGCATGTTACCATTCTAACTTATTCCAGGATGAGGTATCATGTCATGCAAGCTGCTAAGACACTCGTGAACAAGGGTTATGATCCCGAGGTCATTGATATCAGGTCACTGAAACCGTTTGACCTTCACACCATCGGGAATTCAGTGAAGAAGACTCATCGCGTCCTCATTGTCGAGGAATGTATGCGTACAGGAGGTATTGGTGCCAGCTTGACAGCTGCTATAACCGAGAACTTCCATGACTATCTCGATGCCCCAATCATATGTCTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254474" ref_strand="+" ref_description="SGN-E254474 [cLEG-27-N8]">
      <seq>gaatgaacatgggatttcttcttctagcctttaatcaaatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagccgtcatccgaggtcctggtggagttggtcgacagcttggagcggagcactctcaacgccttgagtcatatttccagtcaattcctggaatccaaatggttgcctgttcaaccccctacaacgccaagggcttgatgaaggctgctatcagaagtgataaccctgtgattctttttgagcatgttttgctctacaacctcaaggagagaattccagacgaagagtatgtgttgaatcttgaagaagcagagatggtacgccctggtgagcatgttaccattctaacttattccaggatgaggtatcatgtcatgcaagctgctaagacactcgtgaacaagggttatgatcccgaggtcattgatatcaggtcactgaaaccgtttgaccttcacaccatcgggaattcagtgaagaagactcatcgcgtcctcattgtcgaggaatgtatgcgtacaggaggtattggtgccagcttgacagctgctataaccgagaacttccatgactatctcgatgccccaatcatatgtctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="30066" stop="28834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29766" g_stop="29134" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E254474" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29766" e_stop="29134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGT</genome_strand>
        <mrna_strand>GAATGAACATGGGATTTCTTCTTCTAGCCTTTAATCAAATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGCCGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCGGAGCACTCTCAACGCCTTGAGTCATATTTCCAGTCAATTCCTGGAATCCAAATGGTTGCCTGTTCAACCCCCTACAACGCCAAGGGCTTGATGAAGGCTGCTATCAGAAGTGATAACCCTGTGATTCTTTTTGAGCATGTTTTGCTCTACAACCTCAAGGAGAGAATTCCAGACGAAGAGTATGTGTTGAATCTTGAAGAAGCAGAGATGGTACGCCCTGGTGAGCATGTTACCATTCTAACTTATTCCAGGATGAGGTATCATGTCATGCAAGCTGCTAAGACACTCGTGAACAAGGGTTATGATCCCGAGGTCATTGATATCAGGTCACTGAAACCGTTTGACCTTCACACCATCGGGAATTCAGTGAAGAAGACTCATCGCGTCCTCATTGTCGAGGAATGTATGCGTACAGGAGGTATTGGTGCCAGCTTGACAGCTGCTATAACCGAGAACTTCCATGACTATCTCGATGCCCCAATCATATGTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709332" ref_strand="+" ref_description="SGN-E709332 [FA51BH06]">
      <seq>acgaccggtaatgcaatgactggcttgcgtccagttattgagggactgaacatgggatttcttcttctggccttcaaccagatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagttgtcatccgaggtcctggtggagttggtcgacagcttggagcagagcactctcaacgccttgagtcatacttccagtcaattcctggaatccagatggtcgcctgttcaaccccctacaatgctaagggcttgatgaaggcagctatcaaaagtgataaccctgtgattctgtttgagcatgttttgctctacaacctcaaggaaagaattccagatgaagagtatgtgctgaatcttgaagaagcagagatggtacgacctggggagcatgtaaccattctaacttattccaggatgaggtatcatgtaatgcaggctgccaagacacttgtgaacaagggttatgatcccgaggtcattgatattaggtctctgaaaccatttgatctttacaccatcgggaagtcagtgaaaaagactcatcgtgtgctcattgtcgaggaatgcatgcgcacaggaggtattggggccagcttgacagccgctataactgagaactttcacgactatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="30098" stop="28857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29809" g_stop="29157" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E709332" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29809" e_stop="29157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCT</genome_strand>
        <mrna_strand>ACGACCGGTAATGCAATGACTGGCTTGCGTCCAGTTATTGAGGGACTGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698440" ref_strand="+" ref_description="SGN-E698440 [FA06BC06]">
      <seq>cccttagggatcccgctgtttgtgtaatgggtgaagatgtccgtcattatggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgacactcccattgctgagaactctttcactggtatgggcattggagctgcaatgaccggtttgcgtccagttattgagggaatgaacatgggatttcttcttctagcctttaatcaaatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagtcgtcatccgaggtcctggtggagttggtcgacagcttggagcggagcactctcaacgccttgagtcatatttccagtcaattcctggaatccaaatggttgcctgttcaaccccctacaacgccaagggcttgatgaaggctgctatcagaagtgataaccctgtgattctttttgagcatgttttgctctacaacctcaaggagagaattccagacgaagagtatgtgttgaatcttgaagaagcagagatggtacgccctggtgagcatgttaccattctaacttattccaggatgaggtatcatgtcatgcaagctgctaagacactcgtgaacaagggttatgatcccgaggtcattgatatcaggtcactgaaaccgtttgaccttcacaccatcgggaattcagtgaaaaagactcatcgcgtcctcattgtccaggaatgtatgcgtacagaaggtattggtgccagcttgacagctgctataaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="30250" stop="28876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29955" g_stop="29176" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E698440" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29955" e_stop="29176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTG</genome_strand>
        <mrna_strand>CCCTTAGGGATCCCGCTGTTTGTGTAATGGGTGAAGATGTCCGTCATTATGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGACACTCCCATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACCGGTTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTAGCCTTTAATCAAATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTCGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCGGAGCACTCTCAACGCCTTGAGTCATATTTCCAGTCAATTCCTGGAATCCAAATGGTTGCCTGTTCAACCCCCTACAACGCCAAGGGCTTGATGAAGGCTGCTATCAGAAGTGATAACCCTGTGATTCTTTTTGAGCATGTTTTGCTCTACAACCTCAAGGAGAGAATTCCAGACGAAGAGTATGTGTTGAATCTTGAAGAAGCAGAGATGGTACGCCCTGGTGAGCATGTTACCATTCTAACTTATTCCAGGATGAGGTATCATGTCATGCAAGCTGCTAAGACACTCGTGAACAAGGGTTATGATCCCGAGGTCATTGATATCAGGTCACTGAAACCGTTTGACCTTCACACCATCGGGAATTCAGTGAAAAAGACTCATCGCGTCCTCATTGTCCAGGAATGTATGCGTACAGAAGGTATTGGTGCCAGCTTGACAGCTGCTATAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252001" ref_strand="+" ref_description="SGN-E252001 [cLEG-8-K5]">
      <seq>gaatgaacatgggatttcttcttctagcctttaatcaaatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagccgtcatccgaggtcctggtggagttggtcgacagcttggagcggagcactctcaacgccttgagtcatatttccagtcaattcctggaatccaaatggttgcctgttcaaccccctacaacgccaagggcttgatgaaggctgctatcagaagtgataaccctgtgattctttttgagcatgttttgctctacaacctcaaggagagaattccagacgaagagtatgtgttgaatcttgaagaagcagagatggtacgccctggtgagcatgttaccattctaacttattccaggatgaggtatcatgtcatgcaagctgctaagacactcgtgaacaagggttatgatcccgaggtcattgatatcaggtcactgaaaccgtttgaccttcacaccatcgggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="30066" stop="28965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29766" g_stop="29264" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E252001" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29766" e_stop="29264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAG</genome_strand>
        <mrna_strand>GAATGAACATGGGATTTCTTCTTCTAGCCTTTAATCAAATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGCCGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCGGAGCACTCTCAACGCCTTGAGTCATATTTCCAGTCAATTCCTGGAATCCAAATGGTTGCCTGTTCAACCCCCTACAACGCCAAGGGCTTGATGAAGGCTGCTATCAGAAGTGATAACCCTGTGATTCTTTTTGAGCATGTTTTGCTCTACAACCTCAAGGAGAGAATTCCAGACGAAGAGTATGTGTTGAATCTTGAAGAAGCAGAGATGGTACGCCCTGGTGAGCATGTTACCATTCTAACTTATTCCAGGATGAGGTATCATGTCATGCAAGCTGCTAAGACACTCGTGAACAAGGGTTATGATCCCGAGGTCATTGATATCAGGTCACTGAAACCGTTTGACCTTCACACCATCGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280251" ref_strand="+" ref_description="SGN-E280251 [cLEL-7-P12](-)">
      <seq>taatatcaatgacctcgggatcataacccttgttcacaagtgtcttggcagcttgcattacatgatacctcatcctggaataagttagaatggttacatgctccccaggtcgtaccatctctgcttcttcaagattcagcacatactcttcatctggaattctttccttgaggttgtagagcaaaacatgctcaaacagaatcacagggttatcacttttgatagctgccttcatcaagcccttagcattgtagggggttgaacaggcgaccatctggattccaggaattgactggaagtatgactcaaggcgttgagagtgctctgctccaagctgtcgaccaactccaccaggacctcggatgacaactggtatcttaacctggccaccagatgtgtagtggagcataccgcagttgttactggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="+" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="29002" stop="30023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29302" g_stop="29730" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="+" ref_id="SGN-E280251" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29302" e_stop="29730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATCAATGACCTCGGGATCATAACCCTTGTTCACAAGTGTCTTGGCAGCCTGCATTACATGATACCTCATCCTGGAATAAGTTAGAATGGTTACATGCTCCCCAGGTCGTACCATCTCTGCTTCTTCAAGATTCAGCACATACTCTTCATCTGGAATTCTTTCCTTGAGGTTGTAGAGCAAAACATGCTCAAACAGAATCACAGGGTTATCACTTTTGATAGCTGCCTTCATCAAGCCCTTAGCATTGTAGGGGGTTGAACAGGCGACCATCTGGATTCCAGGAATTGACTGGAAGTATGACTCAAGGCGTTGAGAGTGCTCTGCTCCAAGCTGTCGACCAACTCCACCAGGACCTCGGATGACAACTGGTATCTTAAACTGGCCACCAGATGTGTAGTGGAGCATACCGCAGTTGTTAGATATCT</genome_strand>
        <mrna_strand>TAATATCAATGACCTCGGGATCATAACCCTTGTTCACAAGTGTCTTGGCAGCTTGCATTACATGATACCTCATCCTGGAATAAGTTAGAATGGTTACATGCTCCCCAGGTCGTACCATCTCTGCTTCTTCAAGATTCAGCACATACTCTTCATCTGGAATTCTTTCCTTGAGGTTGTAGAGCAAAACATGCTCAAACAGAATCACAGGGTTATCACTTTTGATAGCTGCCTTCATCAAGCCCTTAGCATTGTAGGGGGTTGAACAGGCGACCATCTGGATTCCAGGAATTGACTGGAAGTATGACTCAAGGCGTTGAGAGTGCTCTGCTCCAAGCTGTCGACCAACTCCACCAGGACCTCGGATGACAACTGGTATCTTAACCTGGCCACCAGATGTGTAGTGGAGCATACCGCAGTTGTTACTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731227" ref_strand="+" ref_description="SGN-E731227 [LA26CA12]">
      <seq>tcattatatactgctgcagcttatacttcatcaaagccagggcatgaactattgctctttgaggccctccgtgaaggtcttgaagaagaaatggacagggatcccgctgtttgtgtaatgggtgaagatgtcggtcattatggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgacactcccattgctgagaactctttcactggtatgggcattggagctgcaatgaccggtttgcgtccagttattgagggaatgaacatgggatttcttcttctagcctttaatcaaatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagtcgtcatccgaggtcctggtggagttggtcgacagcttggagcggagcactctcaacgccttgagtcatatttccagtcaattcctggaatccaaatggttgcctgttcaaccccctacaacgccaagggcttgatgaaggctgctatcagaagtgataaccctgtgattctttttgagcatgttttgctctacaacctcaaggagagaattccagacgaagagtatgtgttgaatcttgaagaagcagagatggtacgccctggtgagcatgttaccattctaacttattccaggatgaggtatcatgtcatgcaagctgctaagacactcgtgaacaagggttatgatcccgaggtcattgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="30306" stop="29004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30005" g_stop="29304" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="743" r_length="702" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E731227" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30005" e_stop="29304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATAT</genome_strand>
        <mrna_strand>GCATGAACTATTGCTCTTTGAGGCCCTCCGTGAAGGTCTTGAAGAAGAAATGGACAGGGATCCCGCTGTTTGTGTAATGGGTGAAGATGTCGGTCATTATGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGACACTCCCATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACCGGTTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTAGCCTTTAATCAAATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTCGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCGGAGCACTCTCAACGCCTTGAGTCATATTTCCAGTCAATTCCTGGAATCCAAATGGTTGCCTGTTCAACCCCCTACAACGCCAAGGGCTTGATGAAGGCTGCTATCAGAAGTGATAACCCTGTGATTCTTTTTGAGCATGTTTTGCTCTACAACCTCAAGGAGAGAATTCCAGACGAAGAGTATGTGTTGAATCTTGAAGAAGCAGAGATGGTACGCCCTGGTGAGCATGTTACCATTCTAACTTATTCCAGGATGAGGTATCATGTCATGCAAGCTGCTAAGACACTCGTGAACAAGGGTTATGATCCCGAGGTCATTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706009" ref_strand="+" ref_description="SGN-E706009 [FA28DA07]">
      <seq>atttttcttcgtggggttttctagatggctgctattatacaaggaattggtgctgctactgcactaacctcagccagttctttggacaccaagaagacatttttctccaattctcgcagatctttgtcagttggtgcagagaggaaaggaaggacttttgtggttagatctgatgggggtttgagctatggtttgaatggacgtggaggaagagctgaacaattaattactaatgctgttgctactaaagaagatactgctgcagcttctacttcatcaaagccagggcatgaactattgctctttgaggccctccgtgaaggtcttgaagaagaaatggacagggatcccgctgtttgtgtaatgggtgaagatgtcggtcattatggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgacactcccattgctgagaactctttcactggtatgggcattggagctgcaatgaccggtttgcgtccagttattgagggaatgaacatgggatttcttcttctagcctttaatcaaatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagtcgtcatccgaggtcctggtggagttggtcgacagcttggagcggagcactctcaacgccttgagtcatatttccagtcaattcctggaatccaaatggttgcctgttcaaccccctacaacgccaagggcttgatgaaggctgctatcagaagtgataaccctgtgattctttttgagcatgttttgctctacaacctcaaggagagaattccagacgaagagtatgtgttgaatcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="38309" stop="29130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38009" g_stop="37880" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37879" i_stop="37637" i_length="243">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37636" g_stop="37522" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="243" r_length="113" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="287" r_length="44" r_score="0.886"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337">
            <donor d_prob="1.000" d_score="0.89"/>
            <acceptor a_prob="0.985" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30005" g_stop="29430" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="863" r_length="576" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E706009" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38009" e_stop="37880"/>
          <exon e_start="37636" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
          <exon e_start="30005" e_stop="29430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAGGTTTGTTGCAATTTATTAGTCTTTTAGCTAGTATTCGAAATTGGGTTTTGTTAGTATTGCTTAAATTTATGTTCTTTTTTTGTTGATTATGTTTGTTTGGTTCTCTTTTCTGATTCAGGGTTTATCTAATCTTTGTGTCTTACGGTTGTTTTTGATCGGAAGTATTAATTGGTCCACTAAAAGAATGTTTTATTTTCCAGTTAGTGCTTGTTTACTCTCCAAATTTCAGTCATTTATCTTCCATTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGGGTATATTTACTACTTCTCTAAGTTGTACTTGCATATCTTGACAGTTTAAATTGCTTCCTTCTGGTTGCCACTTCATTTGTCTCTCCTTATCTGAAACTTTATGTACGCGTGGTGGCTTGTCAGCAGGTGAGATTAGTTTTTTTCTTTAAAAATATCTTGATTAAGTTGGGCAAGGTTACATTCTTGTCTTGTAAAGAGGTTGGCTGGTAGGATTATGGTTTTCTTTTATTGTATGATTAAATTCAGCTGCTAATCTCGATGGTGTTGTCAAAGGAAATAGAGAAGTCAATAGAAGTTGCTGTTTTGCTTCAGATTATGCTAATTCATCCTGTGATAAACATGTCTAGTTCTCCTCCTTGTTCTGAATTTTGATAGCAGAAACAAAAGAAAGAGTGATGGTGGGAGTGATGTGTTCTTTTTTGTTTGGATTAGTACTGGCGTACTGGGGATATAAATAAAAAAGAAAAGAAAAGAAAGAAAGAAAGGATGGGCTACATAGTGAACAAAAGTTCAACCCCTCTTACCAACCAAAAGTAGGCTTACATAGAGAAATTCATTTTTAGTATATCTTATATTTAAGCTACACAGGTCTCCCGTAGACTTGAAAAAACGAGTTACTCTTTTTTCACTTTCTTCTTCTGGTACTTCCAATTATTAATTTATTATTTGCTCAAAAATTTTGAAGGTTCTTATTTGTTGTAATTTTTTGCTATGTTTATGGTCAAAAGAAATGATTTCCATAGCCATTCCAATAATACTTCTTTTGATAAGTATATAATTAAACTTTTTTCGAGTCATATCGTTTGGTGTTGGGGATGGGATATATATCTATATATGTATGAGAAAACTTATCCCATCGTTGCTGTATAAATGGTAGGATAAATAATTCCAAAGACTAATTAATATCCCTAACAAAAAGAATGATAAAATAGCCTTGTTGTTTATCCTGGGATTATTATCATCTATCCCTCATACCAAGTGACCCGTAAGAGATTACAATGACAACATACCCAGTGTAATTCCACAAGTGGGTCTGGGAGGGCAAATGTACGCATACCTTCTCTCTATCTTTTAGTAGAGAGGTTGTTTCCAATAGACTCTCGACTCAAAAGTAGTGTCATTAAAGCATGATATAAAAGAAAATAACCACTGCAAAATAGCAAGATAAATGAAACACATGAAGTAATATGTAGTAGAAAAAATGGAGAATAAGAACTATGCAAATACTAGATGTGATTACTAATTAAGGAGAGGATGAGTCGAGGAGATTAACCCTCGAGATTAACCCTCCAACCAAACTCTCACATTTCCTCTTCACCTGTCTGAACCACCTCTGTCTCACTTCTCTAATCTTATCCTTCACGGAGGCCACTTTCGCCTTGTCCTGTGTATATTCATTCCTAATCTCATCTCTCCTAGTATGCCTGCATATCCATTTGGGCATCCTCATTTATGCTATCTTCATCTTCTGTATGTGTGCATTCTTGACTGGCCAACCCTTTACCTCGCACTACAGTCTAGGTTTAACTATCACTCAGTAGAACTTACCTTTTTAAGTCTTGGTGAAACATTTTGTCACACAGTACTCTGGATACAAGTGCCCATTTCATTGTTAATCTTCCCATTTCCTTGGATTATAGACCCAATATACTTGAAACTCTCCCTTGGGTATGACTTGTCTATCAATCTTCACTTCCATCCCCTCCTCCACTATAGGCATTGTGTGATTGAACTTGCAGTCCAGGTCCATTGGCGTAGCCACATGGTTGTATACCCTTCGTTGGAAAAAAAAATATCGTACATAGTACATACAAGTAAGTATATACAAGAAAATGATACATGAAATGATTAAATAACATTTTTTGGACACCCTTGAGATAACATGCTGTTAATGCCCAGTATTTTCACCTCCTTTGAATGGGGAAGTGTTCGTGTGTTCGAATCTCACTAGTTCTACTTTTTGAAACGAGCTTTTGTTGTGCTATTTCTGGACACCCTTCTGGTTCCGCCACTGCCAGTTACTCTATTTTAATCCTACGTTTGCTTAACCTGAAACCTTTAGATTCTAGGGTCTGTTTGCCAAACTACTCTATCATTAACTCCACCACGCGTCTCATAGATATCAATACAGATCGATACTATGTCATTTGCGAATAACATACATCAAGATGCCACCCCTTAAATACGCCACGTCAATTCGTCCATCACTTTGGTTAAAAGAATTGCGATGTATGATTGAAGTGCCCAACAAAATAATGTACACCACATGCTAGCCTGGACTTCGGATTTAGAGGTTGTGATAGGTGGAGTTTTCTAAGTTAAGTCATACACTCACTATATATTTGTGAGGGAGGACTCTGACTTTCCACACTTATCAACCTGAAATCCTAGGAAGGAAAGATGTGTTTCTCTTCTTGCCTAGAAACAAGAGAGGTAATGTTTGACATCTGAAGATCCAAGGCAGAAAAGATTGTCTGTCAATTTGTGTTTGTCAAGAAGATGTGGACCATCTCCTATTGCAGTGTGCTGCTGCTACTAGTTGTAGTTAATGGTTGTGAACTGGTCCAAAATGCCATGGACAACGTTGGGCACATCAATGAATTTGTTGTGCAACTAGACTTTCAGAAGAAGGATGGGAAGACATAGGCATGGTGCACCTTTAGCCCTAGTGTGAGTTCTTTAGAAGGAGAGCAATCAGAGAGCGCTTATAGACTGATTTGACTATCCAACTCTAAGAGATTGACTATCCAAAAAGATAAAAAATAAACCTAAGATGTTGCTGCGAGCCTGCAACTATACAACTATTTTACGAAGATTAATTCGTATTTCTAGCTTGTAAGTATCTGACGGAATTTTAGAGTGTCCTTATCATTTATTTTATTTCATATACACTAGACACAGAGGCGAATCGATGATTTCGAGTCTCTTGGTGCCAAGTAGGTTAATCAGTTAAATTAATTTTAGGCTTCAATCGAATTATTCATCTTTCCGGTCTATGAAATATGAACAATAATGAGATGACAATTTTTGTATTATATATACTACAAATTCTTTAAGCATGGGTCATGCTAATCTTCTCCGCATTATTTCAATTTTATTAGATGTCTCCAACAAAGCAAAAGTTTATCATTTTAATTTTAGATGCTCTTGTTGAAAGTCGAATTCAAGATCGACAACGGAAGATTTTTTTTCTCACTTATATTTGGGAAAAATCACTTTAGCTCAATTGTTTGACTATTTGAACTCTCACCTTACCATTTTCCCTTCCCTTCCCTACCTCCATATAAAAATACAAATTTTCACCCCACATTTGATTGAGATCATAAAGTAAAGAAAGTTAAAACTTTCAATTATACTATAAATATCATAAATATTCATCCTTCATTTATAATTGTACTCGACAAGTTTTTACATTTTGAAAACGATCAATGACAATATCAATGCGTATATTTATAAATGGATCACGTTTTATGTAACACGCTAGTCCAATATACTTATAAATTACTACTCCATATTAAAACAACTATTAGAAACAAACAAAAAAAATAATGTGTCGCTATCATATTAAGGAAGCAAGTTAAAATTGCAAAGGGCCGTCAGCGAGCAAGTTAAAGTTGCAAATTAAAAAACTCCTAGGGCCTCAGCGAGATTCGACCTCGCGATCTCCGTATTAGAATATGACCCTTAGCCAGCCACGCCACAAGGACTTTTGGTTCCCTGGGTGGCACGTTTAATATTTGTAATTATATTGTCGATATATACCTATATATATTAGAGTTTCCGTCGAAGCCCGTGGGAGGTGTATCACCCCCACGAACCTTAGTAGATCCACCCCTGACTAGACAGCTACCATAAGGGCACAACTATATTGAATTCTTAAAATGCATTGTACCTTGCACTCCATTTTACTGCTTGCTGCTTGGATCTTGTCATGTGACTGGCTCACAAAAAGAAGAGAAAGAATGCAACTATAGGATCTCAGAGAGAAACACCTGAGACCAACATAAAATGTGTCTCACTTTTGGGATCTCATCGTCTCCTATTCTTAATGATAAAACAAATTCTCTTCAACTTTATATGGATTCATAGAGGCCCTTGCTAATAGTGTTTGTCAACCCTTGTTTATTTTAGATCCTTACTTAAAGGCCAAGTTATTGCCTTTTTGTTTTATTTGTAACTTCTTACCGAGCTATAACTCCAACACAAATCTACTTTTACGTATGGGGATGTAGGTCAATAACACTTTGTTAGTGTTACCCTAATTTATTTTAGATCTGTACTTAAAGGCCAACTTATTGCCTACTTGTTTTATTTGTTCGAGATTTTACAGTATGTACATAATGCACATACATAAATGAACTATAAGACAATATGTATTATTGTACTTGTACACATCATATGTGTAGTGATTGTTATGTGTACTTGCAATAAAATTGTGCCCAAGTATTTCTTGTCTTGATGTGACTTCATTTTTATGCAAGCTTTTTCTAATATCTAGTAATTCTTGTAGAAATGGCAATTGAGGTTTTGTACTCCTAAAGTTGACACAAAATAGAAAACAAAAAACCGCAAGAACTTCCATTAGTCTTATCTCTTTTTTTGTGTGTAGCATACCTCTAAGAAAGAAACTCATCTATTCCAATTCAAATATGATGATTCACCATTGTTGGTCGATGGAGTTTGGCCTTGTCATGTAGGTGAATTACCTGATTTACACGTCAACACCATATCAGTTCAATTTGGGTCAAAGACATTTAGGAATTATAACAACATAAAGCAAAATGGCGAGTTGATCATCCATATGGAAGATGTACTCAGAAGTATCATTAAGAAAGGTGCTTTGAGATATGCTTTCTTGGTGTAATGTAAAATAGAGATTTATGATATGATGGAGGCCTCTGTTCCTTTTACCAATGATGCTGAGCTGAAATCAAATACTTTTTGCAGTTCTGTGAAGAAGTGTTTACCAATTATTTGATCTGAAAGGGGGGACCAAGCAGTTTTGTATACTGCTACAAATGGTTAGGGTTAGTGCTGAGCCTTGAAAAGTTTGGTGCCACTGTATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATTTCCACATATTTTGACATATTATTTGGGTCAAAATTTGGGTGAAATTTCAACATGTGTTTGACCATTGTTTTTGGGAAACATATTTAACTTTTTTAGGAGATATGATTTATACCCATATCAAAACTAACCATAGGTTTGTAGTACAAATAAATTGGATCTTTGTTCCAACAAATAACAAGTAGTGTCCAGGACATTAGAGCAATATGGTAGTTCAGAGTGAGTTAGTTCAACAAGTATCATTCCATACATTGTGAAGTAGACAGAGCACATGACATTATTACCCTTAGCCGATTGTTCATCATTTCATCAATAGTCATATCATTACTTTCATATTCACGGAATATTCTATCACTGCTTGGGTGTTTACGGAAAAATTATGTAAATATAGCGCAACAACTACTGTAGAGGGTGTTTTTGTAAACGATAAAGTTTGGTATAGAATTTAAATTTTTAAAAGATTCCAAATAATGAGATTTGACCCAATACTAGTTTTTTCTAGTATTTGGGAATTTGGGTTATTTGCCAAATAATGACAAATTGTATGGACAAACACTATTTGCCAAATTTGCCCCCAAATTTTACATGGGAAATCTATGGCCAAATGGGTCAGAAGAGTGCTCTCTGAGATGGGAACTAGAGCAGTAACTAAGCCTGGGGCATGGGTGTTGCTTTGGTACTTCCGTCAGTGAATGTTCTCTTTGTATGGGAGAATATGCTAAGCGGAAAAATAGAAATGTCCGAATGGGGCATGCAAACACACTAGAACAAGTATGCTGCTAGGAGGAACAAAAGAAGCATATGAATCAGAACTTTACCTTTGAATCAGGGCAGTTATTGTAGAAACACAATTATGTGATAGTTGTGGAGAACTAAAATTCATTGTTTGAAAAACAATGGGCTCAGGGCTGAACCAAAGGTTTGTGTTTATAAGTCTATTGACTGAAGTTAGAATTCCATTAGTGTATGACAGAGTTAACAAAATAAGCATAGGAATCAGAACTTTACCTTTGAATCACGGCAGTTAATGTAGAAACACAATTATGTGATAGTTGTGGAGAACAAAAATTTATTATTTGGAAACAATGAGCTGAACCAAAGGTATGTCTATTAACTGAAGTTAGAATTCCATGAGTGTATGACAGAGGAAAAGTTACCCTGTGAGTGTCGTGATCTATGTTCATACAATAACTGGTTAAGCAATCTTAATTTTTACCATCAGAGGTCCCTCTGAAGATTGTCATCGATGTCTTTACTCTTGTCGAGCGGAGTTGTTCAGAAGGAAGGCTTACATCTTATATAGGGAATTTGGCTCCCTTTCATACTTCAACTCTTTGGAACTTTGATATTTTCTTTCTGCTTTATCGGATTTTGAGGTTCTAATTACATTGAATTATTTGGGCCACCAGAAGCTAGTAGAGAGCTCATATAGTTCTGATGGCAGTCATAACAATTATTATCTTTGGATGTAAATGAGTTACCTTTGCTTCTTTGATGGGGTCTTCCTAATTAATGGGGATGATTATGTTCATGTTCAAAAGAATTTTCTGTGATTGTGCTTGTTTAATCATTAAACTTTAGCGTCAACCACTTGCTACTGCACTGCCCTGTTGCTTCAGACCTCTGGAATATGTTATGTTGTTTTTTTGGTCTATCCTGGGTCAGGGATGCCTTAGAAAGTTGGAGTTCACGGTAAGTTGACAACGCAATCAAGTGTATGTCGATGATGATCCCTGGTACTCTCTTTTGGTATTTATGGAAAGTGGAACAGAAGATGTTTTGATGGAATTTCCACTTCTAGAAATCTTTTGCGAGGCAGATGTCTAGTTAGCCTTTTTAGCTGTCCAAATTGACCCATGTAAATAATTTAGACCTATTCTTGGATTTTGTTAGCTCTATAGTTTAAAAAGAGGCTACAAATCCTTTTTTGTGAGCTTAACTGCTCTCTCCTTGTAATGCTAGCATCTTGTTGATGCCTTAAAAAGAATCTATCTTACTTCACAAAAAAGAAAGCATTAAACTTGCATCATTGAATAGATCTCTGTTGGCTGGTTGGATATACACCTTTATTCAATTTTTTAATCGTCGATCACGGTGTGAACTATATTAATTACTGCCCAACTGCTCGCGTGCTGATTGTACTTTATCCAGCTTGCTTATTACTTGATCTCACCAGTTGTTTGATTGAATGTACATCTTTAGGCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGA</genome_strand>
        <mrna_strand>ATTTTTCTTCGTGGGGTTTTCTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACCTCAGCCAGTTCTTTGGACACCAAGAAGACATTTTTCTCCAATTCTCGCAGATCTTTGTCAG...................................................................................................................................................................................................................................................TTGG--TGCAGAGAGGAAAGGAAGGACTTTTGTGGTTAGATCTGATGGGGGTTTGAGCTATGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATTACTAATGCTGTTGCT.......................................................................................................................................ACTAAAGAAGATACTGCTGCAGCTTCTACTTCATCAAAGCCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAACTATTGCTCTTTGAGGCCCTCCGTGAAGGTCTTGAAGAAGAAATGGACAGGGATCCCGCTGTTTGTGTAATGGGTGAAGATGTCGGTCATTATGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGACACTCCCATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACCGGTTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTAGCCTTTAATCAAATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTCGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCGGAGCACTCTCAACGCCTTGAGTCATATTTCCAGTCAATTCCTGGAATCCAAATGGTTGCCTGTTCAACCCCCTACAACGCCAAGGGCTTGATGAAGGCTGCTATCAGAAGTGATAACCCTGTGATTCTTTTTGAGCATGTTTTGCTCTACAACCTCAAGGAGAGAATTCCAGACGAAGAGTATGTGTTGAATCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245544" ref_strand="+" ref_description="SGN-E245544 [cLEF-43-L2]">
      <seq>tgctctttgaggccctccgcgaaggcctggaagaagagatggacagagatcccactgtttgtgtaatgggtgaagatgtctgtcattacggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgatactcctattgctgagaactctttcactggtatgggcattggagctgcaatgactggcttgcgtccagttattgagggaatgaacatgggatttcttcttctggccttcaaccagatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagttgtcatccgaggtcctggtggagttggtcgacagcttggagcagagcactctcaacgccttgagtcatacttccagtcaattcctggaatccagatggtcgcctgttcaaccccctacaatgctaagggcttgatgaaggcagctatcaaaagtgataaccctgtgattctgtttgagcatgttttgctctacaacctcaaggaaagaattccagatgaagagtatgtgctgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="30294" stop="29133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29994" g_stop="29433" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E245544" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29994" e_stop="29433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCT</genome_strand>
        <mrna_strand>TGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCTGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701930" ref_strand="+" ref_description="SGN-E701930 [FA17BD04]">
      <seq>agcactttgttttcttcgccgcaactcatttttttctctattcactgagaatatatttatagttatggctgctattatacaaggaattggtgctgctactgcactaacatcagccaattctttggataccaagaagtcacttttcgctaattctcgcagatctttgtcagagaggaaaggaaggttatttgtggctagatctgatgggcgtttaagcagtggtttgaatggacgtggaggaagagctgaacaattaatcactaatgctgttgctgcaaaagaagatgctgctgcagcttctacttcattcaagccagggcatgaactgttgctctttgaggccctccgcgaaggcctggaagaagagatggacagagatcccactgtttgtgtaatgggtgaagatgtcggtcattacggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgatactcctattgctgagaactctttcactggtatgggcattggagctgcaatgactggcttgcgtccagttattgagggaatgaacatgggatttcttcttctggccttcaaccagatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagttgtcatccgaggtcctggtggagttggtcgacagcttggagcagagcactctcaacgccttgagtcatacttccagtcaattcctggaatccagatggtcgcctgttcaaccccctacaatgctaanggcttgatgaaggcagctatcaaaagtgataaccctgtgattctgtttgagcatgttttgctctacaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="38438" stop="29172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38138" g_stop="38075" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38074" i_stop="37986" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37985" g_stop="37880" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="170" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37625" g_stop="37522" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="274" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="318" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30005" g_stop="29472" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="852" r_length="534" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E701930" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38138" e_stop="38075"/>
          <exon e_start="37985" e_stop="37880"/>
          <exon e_start="37625" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
          <exon e_start="30005" e_stop="29472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAGGTTTGTTGCAATTTATTAGTCTTTTAGCTAGTATTCGAAATTGGGTTTTGTTAGTATTGCTTAAATTTATGTTCTTTTTTTGTTGATTATGTTTGTTTGGTTCTCTTTTCTGATTCAGGGTTTATCTAATCTTTGTGTCTTACGGTTGTTTTTGATCGGAAGTATTAATTGGTCCACTAAAAGAATGTTTTATTTTCCAGTTAGTGCTTGTTTACTCTCCAAATTTCAGTCATTTATCTTCCATTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGGGTATATTTACTACTTCTCTAAGTTGTACTTGCATATCTTGACAGTTTAAATTGCTTCCTTCTGGTTGCCACTTCATTTGTCTCTCCTTATCTGAAACTTTATGTACGCGTGGTGGCTTGTCAGCAGGTGAGATTAGTTTTTTTCTTTAAAAATATCTTGATTAAGTTGGGCAAGGTTACATTCTTGTCTTGTAAAGAGGTTGGCTGGTAGGATTATGGTTTTCTTTTATTGTATGATTAAATTCAGCTGCTAATCTCGATGGTGTTGTCAAAGGAAATAGAGAAGTCAATAGAAGTTGCTGTTTTGCTTCAGATTATGCTAATTCATCCTGTGATAAACATGTCTAGTTCTCCTCCTTGTTCTGAATTTTGATAGCAGAAACAAAAGAAAGAGTGATGGTGGGAGTGATGTGTTCTTTTTTGTTTGGATTAGTACTGGCGTACTGGGGATATAAATAAAAAAGAAAAGAAAAGAAAGAAAGAAAGGATGGGCTACATAGTGAACAAAAGTTCAACCCCTCTTACCAACCAAAAGTAGGCTTACATAGAGAAATTCATTTTTAGTATATCTTATATTTAAGCTACACAGGTCTCCCGTAGACTTGAAAAAACGAGTTACTCTTTTTTCACTTTCTTCTTCTGGTACTTCCAATTATTAATTTATTATTTGCTCAAAAATTTTGAAGGTTCTTATTTGTTGTAATTTTTTGCTATGTTTATGGTCAAAAGAAATGATTTCCATAGCCATTCCAATAATACTTCTTTTGATAAGTATATAATTAAACTTTTTTCGAGTCATATCGTTTGGTGTTGGGGATGGGATATATATCTATATATGTATGAGAAAACTTATCCCATCGTTGCTGTATAAATGGTAGGATAAATAATTCCAAAGACTAATTAATATCCCTAACAAAAAGAATGATAAAATAGCCTTGTTGTTTATCCTGGGATTATTATCATCTATCCCTCATACCAAGTGACCCGTAAGAGATTACAATGACAACATACCCAGTGTAATTCCACAAGTGGGTCTGGGAGGGCAAATGTACGCATACCTTCTCTCTATCTTTTAGTAGAGAGGTTGTTTCCAATAGACTCTCGACTCAAAAGTAGTGTCATTAAAGCATGATATAAAAGAAAATAACCACTGCAAAATAGCAAGATAAATGAAACACATGAAGTAATATGTAGTAGAAAAAATGGAGAATAAGAACTATGCAAATACTAGATGTGATTACTAATTAAGGAGAGGATGAGTCGAGGAGATTAACCCTCGAGATTAACCCTCCAACCAAACTCTCACATTTCCTCTTCACCTGTCTGAACCACCTCTGTCTCACTTCTCTAATCTTATCCTTCACGGAGGCCACTTTCGCCTTGTCCTGTGTATATTCATTCCTAATCTCATCTCTCCTAGTATGCCTGCATATCCATTTGGGCATCCTCATTTATGCTATCTTCATCTTCTGTATGTGTGCATTCTTGACTGGCCAACCCTTTACCTCGCACTACAGTCTAGGTTTAACTATCACTCAGTAGAACTTACCTTTTTAAGTCTTGGTGAAACATTTTGTCACACAGTACTCTGGATACAAGTGCCCATTTCATTGTTAATCTTCCCATTTCCTTGGATTATAGACCCAATATACTTGAAACTCTCCCTTGGGTATGACTTGTCTATCAATCTTCACTTCCATCCCCTCCTCCACTATAGGCATTGTGTGATTGAACTTGCAGTCCAGGTCCATTGGCGTAGCCACATGGTTGTATACCCTTCGTTGGAAAAAAAAATATCGTACATAGTACATACAAGTAAGTATATACAAGAAAATGATACATGAAATGATTAAATAACATTTTTTGGACACCCTTGAGATAACATGCTGTTAATGCCCAGTATTTTCACCTCCTTTGAATGGGGAAGTGTTCGTGTGTTCGAATCTCACTAGTTCTACTTTTTGAAACGAGCTTTTGTTGTGCTATTTCTGGACACCCTTCTGGTTCCGCCACTGCCAGTTACTCTATTTTAATCCTACGTTTGCTTAACCTGAAACCTTTAGATTCTAGGGTCTGTTTGCCAAACTACTCTATCATTAACTCCACCACGCGTCTCATAGATATCAATACAGATCGATACTATGTCATTTGCGAATAACATACATCAAGATGCCACCCCTTAAATACGCCACGTCAATTCGTCCATCACTTTGGTTAAAAGAATTGCGATGTATGATTGAAGTGCCCAACAAAATAATGTACACCACATGCTAGCCTGGACTTCGGATTTAGAGGTTGTGATAGGTGGAGTTTTCTAAGTTAAGTCATACACTCACTATATATTTGTGAGGGAGGACTCTGACTTTCCACACTTATCAACCTGAAATCCTAGGAAGGAAAGATGTGTTTCTCTTCTTGCCTAGAAACAAGAGAGGTAATGTTTGACATCTGAAGATCCAAGGCAGAAAAGATTGTCTGTCAATTTGTGTTTGTCAAGAAGATGTGGACCATCTCCTATTGCAGTGTGCTGCTGCTACTAGTTGTAGTTAATGGTTGTGAACTGGTCCAAAATGCCATGGACAACGTTGGGCACATCAATGAATTTGTTGTGCAACTAGACTTTCAGAAGAAGGATGGGAAGACATAGGCATGGTGCACCTTTAGCCCTAGTGTGAGTTCTTTAGAAGGAGAGCAATCAGAGAGCGCTTATAGACTGATTTGACTATCCAACTCTAAGAGATTGACTATCCAAAAAGATAAAAAATAAACCTAAGATGTTGCTGCGAGCCTGCAACTATACAACTATTTTACGAAGATTAATTCGTATTTCTAGCTTGTAAGTATCTGACGGAATTTTAGAGTGTCCTTATCATTTATTTTATTTCATATACACTAGACACAGAGGCGAATCGATGATTTCGAGTCTCTTGGTGCCAAGTAGGTTAATCAGTTAAATTAATTTTAGGCTTCAATCGAATTATTCATCTTTCCGGTCTATGAAATATGAACAATAATGAGATGACAATTTTTGTATTATATATACTACAAATTCTTTAAGCATGGGTCATGCTAATCTTCTCCGCATTATTTCAATTTTATTAGATGTCTCCAACAAAGCAAAAGTTTATCATTTTAATTTTAGATGCTCTTGTTGAAAGTCGAATTCAAGATCGACAACGGAAGATTTTTTTTCTCACTTATATTTGGGAAAAATCACTTTAGCTCAATTGTTTGACTATTTGAACTCTCACCTTACCATTTTCCCTTCCCTTCCCTACCTCCATATAAAAATACAAATTTTCACCCCACATTTGATTGAGATCATAAAGTAAAGAAAGTTAAAACTTTCAATTATACTATAAATATCATAAATATTCATCCTTCATTTATAATTGTACTCGACAAGTTTTTACATTTTGAAAACGATCAATGACAATATCAATGCGTATATTTATAAATGGATCACGTTTTATGTAACACGCTAGTCCAATATACTTATAAATTACTACTCCATATTAAAACAACTATTAGAAACAAACAAAAAAAATAATGTGTCGCTATCATATTAAGGAAGCAAGTTAAAATTGCAAAGGGCCGTCAGCGAGCAAGTTAAAGTTGCAAATTAAAAAACTCCTAGGGCCTCAGCGAGATTCGACCTCGCGATCTCCGTATTAGAATATGACCCTTAGCCAGCCACGCCACAAGGACTTTTGGTTCCCTGGGTGGCACGTTTAATATTTGTAATTATATTGTCGATATATACCTATATATATTAGAGTTTCCGTCGAAGCCCGTGGGAGGTGTATCACCCCCACGAACCTTAGTAGATCCACCCCTGACTAGACAGCTACCATAAGGGCACAACTATATTGAATTCTTAAAATGCATTGTACCTTGCACTCCATTTTACTGCTTGCTGCTTGGATCTTGTCATGTGACTGGCTCACAAAAAGAAGAGAAAGAATGCAACTATAGGATCTCAGAGAGAAACACCTGAGACCAACATAAAATGTGTCTCACTTTTGGGATCTCATCGTCTCCTATTCTTAATGATAAAACAAATTCTCTTCAACTTTATATGGATTCATAGAGGCCCTTGCTAATAGTGTTTGTCAACCCTTGTTTATTTTAGATCCTTACTTAAAGGCCAAGTTATTGCCTTTTTGTTTTATTTGTAACTTCTTACCGAGCTATAACTCCAACACAAATCTACTTTTACGTATGGGGATGTAGGTCAATAACACTTTGTTAGTGTTACCCTAATTTATTTTAGATCTGTACTTAAAGGCCAACTTATTGCCTACTTGTTTTATTTGTTCGAGATTTTACAGTATGTACATAATGCACATACATAAATGAACTATAAGACAATATGTATTATTGTACTTGTACACATCATATGTGTAGTGATTGTTATGTGTACTTGCAATAAAATTGTGCCCAAGTATTTCTTGTCTTGATGTGACTTCATTTTTATGCAAGCTTTTTCTAATATCTAGTAATTCTTGTAGAAATGGCAATTGAGGTTTTGTACTCCTAAAGTTGACACAAAATAGAAAACAAAAAACCGCAAGAACTTCCATTAGTCTTATCTCTTTTTTTGTGTGTAGCATACCTCTAAGAAAGAAACTCATCTATTCCAATTCAAATATGATGATTCACCATTGTTGGTCGATGGAGTTTGGCCTTGTCATGTAGGTGAATTACCTGATTTACACGTCAACACCATATCAGTTCAATTTGGGTCAAAGACATTTAGGAATTATAACAACATAAAGCAAAATGGCGAGTTGATCATCCATATGGAAGATGTACTCAGAAGTATCATTAAGAAAGGTGCTTTGAGATATGCTTTCTTGGTGTAATGTAAAATAGAGATTTATGATATGATGGAGGCCTCTGTTCCTTTTACCAATGATGCTGAGCTGAAATCAAATACTTTTTGCAGTTCTGTGAAGAAGTGTTTACCAATTATTTGATCTGAAAGGGGGGACCAAGCAGTTTTGTATACTGCTACAAATGGTTAGGGTTAGTGCTGAGCCTTGAAAAGTTTGGTGCCACTGTATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATTTCCACATATTTTGACATATTATTTGGGTCAAAATTTGGGTGAAATTTCAACATGTGTTTGACCATTGTTTTTGGGAAACATATTTAACTTTTTTAGGAGATATGATTTATACCCATATCAAAACTAACCATAGGTTTGTAGTACAAATAAATTGGATCTTTGTTCCAACAAATAACAAGTAGTGTCCAGGACATTAGAGCAATATGGTAGTTCAGAGTGAGTTAGTTCAACAAGTATCATTCCATACATTGTGAAGTAGACAGAGCACATGACATTATTACCCTTAGCCGATTGTTCATCATTTCATCAATAGTCATATCATTACTTTCATATTCACGGAATATTCTATCACTGCTTGGGTGTTTACGGAAAAATTATGTAAATATAGCGCAACAACTACTGTAGAGGGTGTTTTTGTAAACGATAAAGTTTGGTATAGAATTTAAATTTTTAAAAGATTCCAAATAATGAGATTTGACCCAATACTAGTTTTTTCTAGTATTTGGGAATTTGGGTTATTTGCCAAATAATGACAAATTGTATGGACAAACACTATTTGCCAAATTTGCCCCCAAATTTTACATGGGAAATCTATGGCCAAATGGGTCAGAAGAGTGCTCTCTGAGATGGGAACTAGAGCAGTAACTAAGCCTGGGGCATGGGTGTTGCTTTGGTACTTCCGTCAGTGAATGTTCTCTTTGTATGGGAGAATATGCTAAGCGGAAAAATAGAAATGTCCGAATGGGGCATGCAAACACACTAGAACAAGTATGCTGCTAGGAGGAACAAAAGAAGCATATGAATCAGAACTTTACCTTTGAATCAGGGCAGTTATTGTAGAAACACAATTATGTGATAGTTGTGGAGAACTAAAATTCATTGTTTGAAAAACAATGGGCTCAGGGCTGAACCAAAGGTTTGTGTTTATAAGTCTATTGACTGAAGTTAGAATTCCATTAGTGTATGACAGAGTTAACAAAATAAGCATAGGAATCAGAACTTTACCTTTGAATCACGGCAGTTAATGTAGAAACACAATTATGTGATAGTTGTGGAGAACAAAAATTTATTATTTGGAAACAATGAGCTGAACCAAAGGTATGTCTATTAACTGAAGTTAGAATTCCATGAGTGTATGACAGAGGAAAAGTTACCCTGTGAGTGTCGTGATCTATGTTCATACAATAACTGGTTAAGCAATCTTAATTTTTACCATCAGAGGTCCCTCTGAAGATTGTCATCGATGTCTTTACTCTTGTCGAGCGGAGTTGTTCAGAAGGAAGGCTTACATCTTATATAGGGAATTTGGCTCCCTTTCATACTTCAACTCTTTGGAACTTTGATATTTTCTTTCTGCTTTATCGGATTTTGAGGTTCTAATTACATTGAATTATTTGGGCCACCAGAAGCTAGTAGAGAGCTCATATAGTTCTGATGGCAGTCATAACAATTATTATCTTTGGATGTAAATGAGTTACCTTTGCTTCTTTGATGGGGTCTTCCTAATTAATGGGGATGATTATGTTCATGTTCAAAAGAATTTTCTGTGATTGTGCTTGTTTAATCATTAAACTTTAGCGTCAACCACTTGCTACTGCACTGCCCTGTTGCTTCAGACCTCTGGAATATGTTATGTTGTTTTTTTGGTCTATCCTGGGTCAGGGATGCCTTAGAAAGTTGGAGTTCACGGTAAGTTGACAACGCAATCAAGTGTATGTCGATGATGATCCCTGGTACTCTCTTTTGGTATTTATGGAAAGTGGAACAGAAGATGTTTTGATGGAATTTCCACTTCTAGAAATCTTTTGCGAGGCAGATGTCTAGTTAGCCTTTTTAGCTGTCCAAATTGACCCATGTAAATAATTTAGACCTATTCTTGGATTTTGTTAGCTCTATAGTTTAAAAAGAGGCTACAAATCCTTTTTTGTGAGCTTAACTGCTCTCTCCTTGTAATGCTAGCATCTTGTTGATGCCTTAAAAAGAATCTATCTTACTTCACAAAAAAGAAAGCATTAAACTTGCATCATTGAATAGATCTCTGTTGGCTGGTTGGATATACACCTTTATTCAATTTTTTAATCGTCGATCACGGTGTGAACTATATTAATTACTGCCCAACTGCTCGCGTGCTGATTGTACTTTATCCAGCTTGCTTATTACTTGATCTCACCAGTTGTTTGATTGAATGTACATCTTTAGGCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCT</genome_strand>
        <mrna_strand>AGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTT.........................................................................................ATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG..............................................................................................................................................................................................................................................................AGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT.......................................................................................................................................GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704252" ref_strand="+" ref_description="SGN-E704252 [FA23DB03]">
      <seq>ctgcattttctcttcatttatttgaatcaagaatccatttttcttcgtggggttttctagatggctgctattatacaaggaattggtgctgctactgcactaacctcagccagttctttggacaccaagaagacatttttctccaattctcgcagatctttgtcagttggtgcagagaggaaaggaaggacttttgtggttagatctgatgggggtttgagctatggtttgaatggacgtggaggaagagctgaacaattaattactaatgctgttgctactaaagaagatactgctgcagcttctacttcatcaaagccagggcatgaactattgctctttgaggccctccgtgaaggtcttgaagaagaaatggacagggatcccgctgtttgtgtaatgggtgaagatgtcggtcattatggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgacactcccattgctgagaactctttcactggtatgggcattggagctgcaatgaccggtttgcgtccagttattgagggaatgaacatgggatttcttcttctagcctttaatcaaatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagtcgtcatccgaggtcctggtggagttggtcgacagcttggagcggagcactctncacgccttgagtcatatttccagtcaattcctggaatccaaatggttgcctgttcaaccccctacaacgccaagggcttgatgaaagctgctatcagaagtgataaccctgtgattctttttgagcatgttttgctctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="38345" stop="29177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38045" g_stop="37880" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37879" i_stop="37637" i_length="243">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37636" g_stop="37522" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="279" r_length="113" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="323" r_length="44" r_score="0.886"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337">
            <donor d_prob="1.000" d_score="0.89"/>
            <acceptor a_prob="0.985" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30005" g_stop="29477" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="852" r_length="529" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E704252" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38045" e_stop="37880"/>
          <exon e_start="37636" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
          <exon e_start="30005" e_stop="29477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAGGTTTGTTGCAATTTATTAGTCTTTTAGCTAGTATTCGAAATTGGGTTTTGTTAGTATTGCTTAAATTTATGTTCTTTTTTTGTTGATTATGTTTGTTTGGTTCTCTTTTCTGATTCAGGGTTTATCTAATCTTTGTGTCTTACGGTTGTTTTTGATCGGAAGTATTAATTGGTCCACTAAAAGAATGTTTTATTTTCCAGTTAGTGCTTGTTTACTCTCCAAATTTCAGTCATTTATCTTCCATTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGGGTATATTTACTACTTCTCTAAGTTGTACTTGCATATCTTGACAGTTTAAATTGCTTCCTTCTGGTTGCCACTTCATTTGTCTCTCCTTATCTGAAACTTTATGTACGCGTGGTGGCTTGTCAGCAGGTGAGATTAGTTTTTTTCTTTAAAAATATCTTGATTAAGTTGGGCAAGGTTACATTCTTGTCTTGTAAAGAGGTTGGCTGGTAGGATTATGGTTTTCTTTTATTGTATGATTAAATTCAGCTGCTAATCTCGATGGTGTTGTCAAAGGAAATAGAGAAGTCAATAGAAGTTGCTGTTTTGCTTCAGATTATGCTAATTCATCCTGTGATAAACATGTCTAGTTCTCCTCCTTGTTCTGAATTTTGATAGCAGAAACAAAAGAAAGAGTGATGGTGGGAGTGATGTGTTCTTTTTTGTTTGGATTAGTACTGGCGTACTGGGGATATAAATAAAAAAGAAAAGAAAAGAAAGAAAGAAAGGATGGGCTACATAGTGAACAAAAGTTCAACCCCTCTTACCAACCAAAAGTAGGCTTACATAGAGAAATTCATTTTTAGTATATCTTATATTTAAGCTACACAGGTCTCCCGTAGACTTGAAAAAACGAGTTACTCTTTTTTCACTTTCTTCTTCTGGTACTTCCAATTATTAATTTATTATTTGCTCAAAAATTTTGAAGGTTCTTATTTGTTGTAATTTTTTGCTATGTTTATGGTCAAAAGAAATGATTTCCATAGCCATTCCAATAATACTTCTTTTGATAAGTATATAATTAAACTTTTTTCGAGTCATATCGTTTGGTGTTGGGGATGGGATATATATCTATATATGTATGAGAAAACTTATCCCATCGTTGCTGTATAAATGGTAGGATAAATAATTCCAAAGACTAATTAATATCCCTAACAAAAAGAATGATAAAATAGCCTTGTTGTTTATCCTGGGATTATTATCATCTATCCCTCATACCAAGTGACCCGTAAGAGATTACAATGACAACATACCCAGTGTAATTCCACAAGTGGGTCTGGGAGGGCAAATGTACGCATACCTTCTCTCTATCTTTTAGTAGAGAGGTTGTTTCCAATAGACTCTCGACTCAAAAGTAGTGTCATTAAAGCATGATATAAAAGAAAATAACCACTGCAAAATAGCAAGATAAATGAAACACATGAAGTAATATGTAGTAGAAAAAATGGAGAATAAGAACTATGCAAATACTAGATGTGATTACTAATTAAGGAGAGGATGAGTCGAGGAGATTAACCCTCGAGATTAACCCTCCAACCAAACTCTCACATTTCCTCTTCACCTGTCTGAACCACCTCTGTCTCACTTCTCTAATCTTATCCTTCACGGAGGCCACTTTCGCCTTGTCCTGTGTATATTCATTCCTAATCTCATCTCTCCTAGTATGCCTGCATATCCATTTGGGCATCCTCATTTATGCTATCTTCATCTTCTGTATGTGTGCATTCTTGACTGGCCAACCCTTTACCTCGCACTACAGTCTAGGTTTAACTATCACTCAGTAGAACTTACCTTTTTAAGTCTTGGTGAAACATTTTGTCACACAGTACTCTGGATACAAGTGCCCATTTCATTGTTAATCTTCCCATTTCCTTGGATTATAGACCCAATATACTTGAAACTCTCCCTTGGGTATGACTTGTCTATCAATCTTCACTTCCATCCCCTCCTCCACTATAGGCATTGTGTGATTGAACTTGCAGTCCAGGTCCATTGGCGTAGCCACATGGTTGTATACCCTTCGTTGGAAAAAAAAATATCGTACATAGTACATACAAGTAAGTATATACAAGAAAATGATACATGAAATGATTAAATAACATTTTTTGGACACCCTTGAGATAACATGCTGTTAATGCCCAGTATTTTCACCTCCTTTGAATGGGGAAGTGTTCGTGTGTTCGAATCTCACTAGTTCTACTTTTTGAAACGAGCTTTTGTTGTGCTATTTCTGGACACCCTTCTGGTTCCGCCACTGCCAGTTACTCTATTTTAATCCTACGTTTGCTTAACCTGAAACCTTTAGATTCTAGGGTCTGTTTGCCAAACTACTCTATCATTAACTCCACCACGCGTCTCATAGATATCAATACAGATCGATACTATGTCATTTGCGAATAACATACATCAAGATGCCACCCCTTAAATACGCCACGTCAATTCGTCCATCACTTTGGTTAAAAGAATTGCGATGTATGATTGAAGTGCCCAACAAAATAATGTACACCACATGCTAGCCTGGACTTCGGATTTAGAGGTTGTGATAGGTGGAGTTTTCTAAGTTAAGTCATACACTCACTATATATTTGTGAGGGAGGACTCTGACTTTCCACACTTATCAACCTGAAATCCTAGGAAGGAAAGATGTGTTTCTCTTCTTGCCTAGAAACAAGAGAGGTAATGTTTGACATCTGAAGATCCAAGGCAGAAAAGATTGTCTGTCAATTTGTGTTTGTCAAGAAGATGTGGACCATCTCCTATTGCAGTGTGCTGCTGCTACTAGTTGTAGTTAATGGTTGTGAACTGGTCCAAAATGCCATGGACAACGTTGGGCACATCAATGAATTTGTTGTGCAACTAGACTTTCAGAAGAAGGATGGGAAGACATAGGCATGGTGCACCTTTAGCCCTAGTGTGAGTTCTTTAGAAGGAGAGCAATCAGAGAGCGCTTATAGACTGATTTGACTATCCAACTCTAAGAGATTGACTATCCAAAAAGATAAAAAATAAACCTAAGATGTTGCTGCGAGCCTGCAACTATACAACTATTTTACGAAGATTAATTCGTATTTCTAGCTTGTAAGTATCTGACGGAATTTTAGAGTGTCCTTATCATTTATTTTATTTCATATACACTAGACACAGAGGCGAATCGATGATTTCGAGTCTCTTGGTGCCAAGTAGGTTAATCAGTTAAATTAATTTTAGGCTTCAATCGAATTATTCATCTTTCCGGTCTATGAAATATGAACAATAATGAGATGACAATTTTTGTATTATATATACTACAAATTCTTTAAGCATGGGTCATGCTAATCTTCTCCGCATTATTTCAATTTTATTAGATGTCTCCAACAAAGCAAAAGTTTATCATTTTAATTTTAGATGCTCTTGTTGAAAGTCGAATTCAAGATCGACAACGGAAGATTTTTTTTCTCACTTATATTTGGGAAAAATCACTTTAGCTCAATTGTTTGACTATTTGAACTCTCACCTTACCATTTTCCCTTCCCTTCCCTACCTCCATATAAAAATACAAATTTTCACCCCACATTTGATTGAGATCATAAAGTAAAGAAAGTTAAAACTTTCAATTATACTATAAATATCATAAATATTCATCCTTCATTTATAATTGTACTCGACAAGTTTTTACATTTTGAAAACGATCAATGACAATATCAATGCGTATATTTATAAATGGATCACGTTTTATGTAACACGCTAGTCCAATATACTTATAAATTACTACTCCATATTAAAACAACTATTAGAAACAAACAAAAAAAATAATGTGTCGCTATCATATTAAGGAAGCAAGTTAAAATTGCAAAGGGCCGTCAGCGAGCAAGTTAAAGTTGCAAATTAAAAAACTCCTAGGGCCTCAGCGAGATTCGACCTCGCGATCTCCGTATTAGAATATGACCCTTAGCCAGCCACGCCACAAGGACTTTTGGTTCCCTGGGTGGCACGTTTAATATTTGTAATTATATTGTCGATATATACCTATATATATTAGAGTTTCCGTCGAAGCCCGTGGGAGGTGTATCACCCCCACGAACCTTAGTAGATCCACCCCTGACTAGACAGCTACCATAAGGGCACAACTATATTGAATTCTTAAAATGCATTGTACCTTGCACTCCATTTTACTGCTTGCTGCTTGGATCTTGTCATGTGACTGGCTCACAAAAAGAAGAGAAAGAATGCAACTATAGGATCTCAGAGAGAAACACCTGAGACCAACATAAAATGTGTCTCACTTTTGGGATCTCATCGTCTCCTATTCTTAATGATAAAACAAATTCTCTTCAACTTTATATGGATTCATAGAGGCCCTTGCTAATAGTGTTTGTCAACCCTTGTTTATTTTAGATCCTTACTTAAAGGCCAAGTTATTGCCTTTTTGTTTTATTTGTAACTTCTTACCGAGCTATAACTCCAACACAAATCTACTTTTACGTATGGGGATGTAGGTCAATAACACTTTGTTAGTGTTACCCTAATTTATTTTAGATCTGTACTTAAAGGCCAACTTATTGCCTACTTGTTTTATTTGTTCGAGATTTTACAGTATGTACATAATGCACATACATAAATGAACTATAAGACAATATGTATTATTGTACTTGTACACATCATATGTGTAGTGATTGTTATGTGTACTTGCAATAAAATTGTGCCCAAGTATTTCTTGTCTTGATGTGACTTCATTTTTATGCAAGCTTTTTCTAATATCTAGTAATTCTTGTAGAAATGGCAATTGAGGTTTTGTACTCCTAAAGTTGACACAAAATAGAAAACAAAAAACCGCAAGAACTTCCATTAGTCTTATCTCTTTTTTTGTGTGTAGCATACCTCTAAGAAAGAAACTCATCTATTCCAATTCAAATATGATGATTCACCATTGTTGGTCGATGGAGTTTGGCCTTGTCATGTAGGTGAATTACCTGATTTACACGTCAACACCATATCAGTTCAATTTGGGTCAAAGACATTTAGGAATTATAACAACATAAAGCAAAATGGCGAGTTGATCATCCATATGGAAGATGTACTCAGAAGTATCATTAAGAAAGGTGCTTTGAGATATGCTTTCTTGGTGTAATGTAAAATAGAGATTTATGATATGATGGAGGCCTCTGTTCCTTTTACCAATGATGCTGAGCTGAAATCAAATACTTTTTGCAGTTCTGTGAAGAAGTGTTTACCAATTATTTGATCTGAAAGGGGGGACCAAGCAGTTTTGTATACTGCTACAAATGGTTAGGGTTAGTGCTGAGCCTTGAAAAGTTTGGTGCCACTGTATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATTTCCACATATTTTGACATATTATTTGGGTCAAAATTTGGGTGAAATTTCAACATGTGTTTGACCATTGTTTTTGGGAAACATATTTAACTTTTTTAGGAGATATGATTTATACCCATATCAAAACTAACCATAGGTTTGTAGTACAAATAAATTGGATCTTTGTTCCAACAAATAACAAGTAGTGTCCAGGACATTAGAGCAATATGGTAGTTCAGAGTGAGTTAGTTCAACAAGTATCATTCCATACATTGTGAAGTAGACAGAGCACATGACATTATTACCCTTAGCCGATTGTTCATCATTTCATCAATAGTCATATCATTACTTTCATATTCACGGAATATTCTATCACTGCTTGGGTGTTTACGGAAAAATTATGTAAATATAGCGCAACAACTACTGTAGAGGGTGTTTTTGTAAACGATAAAGTTTGGTATAGAATTTAAATTTTTAAAAGATTCCAAATAATGAGATTTGACCCAATACTAGTTTTTTCTAGTATTTGGGAATTTGGGTTATTTGCCAAATAATGACAAATTGTATGGACAAACACTATTTGCCAAATTTGCCCCCAAATTTTACATGGGAAATCTATGGCCAAATGGGTCAGAAGAGTGCTCTCTGAGATGGGAACTAGAGCAGTAACTAAGCCTGGGGCATGGGTGTTGCTTTGGTACTTCCGTCAGTGAATGTTCTCTTTGTATGGGAGAATATGCTAAGCGGAAAAATAGAAATGTCCGAATGGGGCATGCAAACACACTAGAACAAGTATGCTGCTAGGAGGAACAAAAGAAGCATATGAATCAGAACTTTACCTTTGAATCAGGGCAGTTATTGTAGAAACACAATTATGTGATAGTTGTGGAGAACTAAAATTCATTGTTTGAAAAACAATGGGCTCAGGGCTGAACCAAAGGTTTGTGTTTATAAGTCTATTGACTGAAGTTAGAATTCCATTAGTGTATGACAGAGTTAACAAAATAAGCATAGGAATCAGAACTTTACCTTTGAATCACGGCAGTTAATGTAGAAACACAATTATGTGATAGTTGTGGAGAACAAAAATTTATTATTTGGAAACAATGAGCTGAACCAAAGGTATGTCTATTAACTGAAGTTAGAATTCCATGAGTGTATGACAGAGGAAAAGTTACCCTGTGAGTGTCGTGATCTATGTTCATACAATAACTGGTTAAGCAATCTTAATTTTTACCATCAGAGGTCCCTCTGAAGATTGTCATCGATGTCTTTACTCTTGTCGAGCGGAGTTGTTCAGAAGGAAGGCTTACATCTTATATAGGGAATTTGGCTCCCTTTCATACTTCAACTCTTTGGAACTTTGATATTTTCTTTCTGCTTTATCGGATTTTGAGGTTCTAATTACATTGAATTATTTGGGCCACCAGAAGCTAGTAGAGAGCTCATATAGTTCTGATGGCAGTCATAACAATTATTATCTTTGGATGTAAATGAGTTACCTTTGCTTCTTTGATGGGGTCTTCCTAATTAATGGGGATGATTATGTTCATGTTCAAAAGAATTTTCTGTGATTGTGCTTGTTTAATCATTAAACTTTAGCGTCAACCACTTGCTACTGCACTGCCCTGTTGCTTCAGACCTCTGGAATATGTTATGTTGTTTTTTTGGTCTATCCTGGGTCAGGGATGCCTTAGAAAGTTGGAGTTCACGGTAAGTTGACAACGCAATCAAGTGTATGTCGATGATGATCCCTGGTACTCTCTTTTGGTATTTATGGAAAGTGGAACAGAAGATGTTTTGATGGAATTTCCACTTCTAGAAATCTTTTGCGAGGCAGATGTCTAGTTAGCCTTTTTAGCTGTCCAAATTGACCCATGTAAATAATTTAGACCTATTCTTGGATTTTGTTAGCTCTATAGTTTAAAAAGAGGCTACAAATCCTTTTTTGTGAGCTTAACTGCTCTCTCCTTGTAATGCTAGCATCTTGTTGATGCCTTAAAAAGAATCTATCTTACTTCACAAAAAAGAAAGCATTAAACTTGCATCATTGAATAGATCTCTGTTGGCTGGTTGGATATACACCTTTATTCAATTTTTTAATCGTCGATCACGGTGTGAACTATATTAATTACTGCCCAACTGCTCGCGTGCTGATTGTACTTTATCCAGCTTGCTTATTACTTGATCTCACCAGTTGTTTGATTGAATGTACATCTTTAGGCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTAC</genome_strand>
        <mrna_strand>CTGCATTTTCTCTTCATTTATTTGAATCAAGAATCCATTTTTCTTCGTGGGGTTTTCTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACCTCAGCCAGTTCTTTGGACACCAAGAAGACATTTTTCTCCAATTCTCGCAGATCTTTGTCAG...................................................................................................................................................................................................................................................TTGG--TGCAGAGAGGAAAGGAAGGACTTTTGTGGTTAGATCTGATGGGGGTTTGAGCTATGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATTACTAATGCTGTTGCT.......................................................................................................................................ACTAAAGAAGATACTGCTGCAGCTTCTACTTCATCAAAGCCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAACTATTGCTCTTTGAGGCCCTCCGTGAAGGTCTTGAAGAAGAAATGGACAGGGATCCCGCTGTTTGTGTAATGGGTGAAGATGTCGGTCATTATGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGACACTCCCATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACCGGTTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTAGCCTTTAATCAAATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTCGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCGGAGCACTCTNCACGCCTTGAGTCATATTTCCAGTCAATTCCTGGAATCCAAATGGTTGCCTGTTCAACCCCCTACAACGCCAAGGGCTTGATGAAAGCTGCTATCAGAAGTGATAACCCTGTGATTCTTTTTGAGCATGTTTTGCTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697879" ref_strand="+" ref_description="SGN-E697879 [FA04CC10]">
      <seq>gctgcaaaagaagatgctgctgcagcttctacttcattcaagccagggcatgaactgttgctctttgaggccctccgcgaaggcctggaagaagagatggacagagatcccactgtttgtgtaatgggtgaagatgtcggtcattacggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgatactcctattgctgagaactctttcactggtatgggcattggagctgcaatgactggcttgcgtccagttattgagggaatgaacatgggatttcttcttctggccttcaaccagatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagttgtcatccgaggtcctggtggagttggtcgacagcttggagcatagcactctcaacgccttgagtcatacttccagtcaattcctggaatccagatggtcgcctgttcaaccccctacaatgctaagggcttgatgaaggcagctatcacaagtgataaccctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="37686" stop="29204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37524" g_stop="37522" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="47" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30005" g_stop="29504" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="549" r_length="502" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E697879" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37524" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
          <exon e_start="30005" e_stop="29504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGGGTATATTTACTACTTCTCTAAGTTGTACTTGCATATCTTGACAGTTTAAATTGCTTCCTTCTGGTTGCCACTTCATTTGTCTCTCCTTATCTGAAACTTTATGTACGCGTGGTGGCTTGTCAGCAGGTGAGATTAGTTTTTTTCTTTAAAAATATCTTGATTAAGTTGGGCAAGGTTACATTCTTGTCTTGTAAAGAGGTTGGCTGGTAGGATTATGGTTTTCTTTTATTGTATGATTAAATTCAGCTGCTAATCTCGATGGTGTTGTCAAAGGAAATAGAGAAGTCAATAGAAGTTGCTGTTTTGCTTCAGATTATGCTAATTCATCCTGTGATAAACATGTCTAGTTCTCCTCCTTGTTCTGAATTTTGATAGCAGAAACAAAAGAAAGAGTGATGGTGGGAGTGATGTGTTCTTTTTTGTTTGGATTAGTACTGGCGTACTGGGGATATAAATAAAAAAGAAAAGAAAAGAAAGAAAGAAAGGATGGGCTACATAGTGAACAAAAGTTCAACCCCTCTTACCAACCAAAAGTAGGCTTACATAGAGAAATTCATTTTTAGTATATCTTATATTTAAGCTACACAGGTCTCCCGTAGACTTGAAAAAACGAGTTACTCTTTTTTCACTTTCTTCTTCTGGTACTTCCAATTATTAATTTATTATTTGCTCAAAAATTTTGAAGGTTCTTATTTGTTGTAATTTTTTGCTATGTTTATGGTCAAAAGAAATGATTTCCATAGCCATTCCAATAATACTTCTTTTGATAAGTATATAATTAAACTTTTTTCGAGTCATATCGTTTGGTGTTGGGGATGGGATATATATCTATATATGTATGAGAAAACTTATCCCATCGTTGCTGTATAAATGGTAGGATAAATAATTCCAAAGACTAATTAATATCCCTAACAAAAAGAATGATAAAATAGCCTTGTTGTTTATCCTGGGATTATTATCATCTATCCCTCATACCAAGTGACCCGTAAGAGATTACAATGACAACATACCCAGTGTAATTCCACAAGTGGGTCTGGGAGGGCAAATGTACGCATACCTTCTCTCTATCTTTTAGTAGAGAGGTTGTTTCCAATAGACTCTCGACTCAAAAGTAGTGTCATTAAAGCATGATATAAAAGAAAATAACCACTGCAAAATAGCAAGATAAATGAAACACATGAAGTAATATGTAGTAGAAAAAATGGAGAATAAGAACTATGCAAATACTAGATGTGATTACTAATTAAGGAGAGGATGAGTCGAGGAGATTAACCCTCGAGATTAACCCTCCAACCAAACTCTCACATTTCCTCTTCACCTGTCTGAACCACCTCTGTCTCACTTCTCTAATCTTATCCTTCACGGAGGCCACTTTCGCCTTGTCCTGTGTATATTCATTCCTAATCTCATCTCTCCTAGTATGCCTGCATATCCATTTGGGCATCCTCATTTATGCTATCTTCATCTTCTGTATGTGTGCATTCTTGACTGGCCAACCCTTTACCTCGCACTACAGTCTAGGTTTAACTATCACTCAGTAGAACTTACCTTTTTAAGTCTTGGTGAAACATTTTGTCACACAGTACTCTGGATACAAGTGCCCATTTCATTGTTAATCTTCCCATTTCCTTGGATTATAGACCCAATATACTTGAAACTCTCCCTTGGGTATGACTTGTCTATCAATCTTCACTTCCATCCCCTCCTCCACTATAGGCATTGTGTGATTGAACTTGCAGTCCAGGTCCATTGGCGTAGCCACATGGTTGTATACCCTTCGTTGGAAAAAAAAATATCGTACATAGTACATACAAGTAAGTATATACAAGAAAATGATACATGAAATGATTAAATAACATTTTTTGGACACCCTTGAGATAACATGCTGTTAATGCCCAGTATTTTCACCTCCTTTGAATGGGGAAGTGTTCGTGTGTTCGAATCTCACTAGTTCTACTTTTTGAAACGAGCTTTTGTTGTGCTATTTCTGGACACCCTTCTGGTTCCGCCACTGCCAGTTACTCTATTTTAATCCTACGTTTGCTTAACCTGAAACCTTTAGATTCTAGGGTCTGTTTGCCAAACTACTCTATCATTAACTCCACCACGCGTCTCATAGATATCAATACAGATCGATACTATGTCATTTGCGAATAACATACATCAAGATGCCACCCCTTAAATACGCCACGTCAATTCGTCCATCACTTTGGTTAAAAGAATTGCGATGTATGATTGAAGTGCCCAACAAAATAATGTACACCACATGCTAGCCTGGACTTCGGATTTAGAGGTTGTGATAGGTGGAGTTTTCTAAGTTAAGTCATACACTCACTATATATTTGTGAGGGAGGACTCTGACTTTCCACACTTATCAACCTGAAATCCTAGGAAGGAAAGATGTGTTTCTCTTCTTGCCTAGAAACAAGAGAGGTAATGTTTGACATCTGAAGATCCAAGGCAGAAAAGATTGTCTGTCAATTTGTGTTTGTCAAGAAGATGTGGACCATCTCCTATTGCAGTGTGCTGCTGCTACTAGTTGTAGTTAATGGTTGTGAACTGGTCCAAAATGCCATGGACAACGTTGGGCACATCAATGAATTTGTTGTGCAACTAGACTTTCAGAAGAAGGATGGGAAGACATAGGCATGGTGCACCTTTAGCCCTAGTGTGAGTTCTTTAGAAGGAGAGCAATCAGAGAGCGCTTATAGACTGATTTGACTATCCAACTCTAAGAGATTGACTATCCAAAAAGATAAAAAATAAACCTAAGATGTTGCTGCGAGCCTGCAACTATACAACTATTTTACGAAGATTAATTCGTATTTCTAGCTTGTAAGTATCTGACGGAATTTTAGAGTGTCCTTATCATTTATTTTATTTCATATACACTAGACACAGAGGCGAATCGATGATTTCGAGTCTCTTGGTGCCAAGTAGGTTAATCAGTTAAATTAATTTTAGGCTTCAATCGAATTATTCATCTTTCCGGTCTATGAAATATGAACAATAATGAGATGACAATTTTTGTATTATATATACTACAAATTCTTTAAGCATGGGTCATGCTAATCTTCTCCGCATTATTTCAATTTTATTAGATGTCTCCAACAAAGCAAAAGTTTATCATTTTAATTTTAGATGCTCTTGTTGAAAGTCGAATTCAAGATCGACAACGGAAGATTTTTTTTCTCACTTATATTTGGGAAAAATCACTTTAGCTCAATTGTTTGACTATTTGAACTCTCACCTTACCATTTTCCCTTCCCTTCCCTACCTCCATATAAAAATACAAATTTTCACCCCACATTTGATTGAGATCATAAAGTAAAGAAAGTTAAAACTTTCAATTATACTATAAATATCATAAATATTCATCCTTCATTTATAATTGTACTCGACAAGTTTTTACATTTTGAAAACGATCAATGACAATATCAATGCGTATATTTATAAATGGATCACGTTTTATGTAACACGCTAGTCCAATATACTTATAAATTACTACTCCATATTAAAACAACTATTAGAAACAAACAAAAAAAATAATGTGTCGCTATCATATTAAGGAAGCAAGTTAAAATTGCAAAGGGCCGTCAGCGAGCAAGTTAAAGTTGCAAATTAAAAAACTCCTAGGGCCTCAGCGAGATTCGACCTCGCGATCTCCGTATTAGAATATGACCCTTAGCCAGCCACGCCACAAGGACTTTTGGTTCCCTGGGTGGCACGTTTAATATTTGTAATTATATTGTCGATATATACCTATATATATTAGAGTTTCCGTCGAAGCCCGTGGGAGGTGTATCACCCCCACGAACCTTAGTAGATCCACCCCTGACTAGACAGCTACCATAAGGGCACAACTATATTGAATTCTTAAAATGCATTGTACCTTGCACTCCATTTTACTGCTTGCTGCTTGGATCTTGTCATGTGACTGGCTCACAAAAAGAAGAGAAAGAATGCAACTATAGGATCTCAGAGAGAAACACCTGAGACCAACATAAAATGTGTCTCACTTTTGGGATCTCATCGTCTCCTATTCTTAATGATAAAACAAATTCTCTTCAACTTTATATGGATTCATAGAGGCCCTTGCTAATAGTGTTTGTCAACCCTTGTTTATTTTAGATCCTTACTTAAAGGCCAAGTTATTGCCTTTTTGTTTTATTTGTAACTTCTTACCGAGCTATAACTCCAACACAAATCTACTTTTACGTATGGGGATGTAGGTCAATAACACTTTGTTAGTGTTACCCTAATTTATTTTAGATCTGTACTTAAAGGCCAACTTATTGCCTACTTGTTTTATTTGTTCGAGATTTTACAGTATGTACATAATGCACATACATAAATGAACTATAAGACAATATGTATTATTGTACTTGTACACATCATATGTGTAGTGATTGTTATGTGTACTTGCAATAAAATTGTGCCCAAGTATTTCTTGTCTTGATGTGACTTCATTTTTATGCAAGCTTTTTCTAATATCTAGTAATTCTTGTAGAAATGGCAATTGAGGTTTTGTACTCCTAAAGTTGACACAAAATAGAAAACAAAAAACCGCAAGAACTTCCATTAGTCTTATCTCTTTTTTTGTGTGTAGCATACCTCTAAGAAAGAAACTCATCTATTCCAATTCAAATATGATGATTCACCATTGTTGGTCGATGGAGTTTGGCCTTGTCATGTAGGTGAATTACCTGATTTACACGTCAACACCATATCAGTTCAATTTGGGTCAAAGACATTTAGGAATTATAACAACATAAAGCAAAATGGCGAGTTGATCATCCATATGGAAGATGTACTCAGAAGTATCATTAAGAAAGGTGCTTTGAGATATGCTTTCTTGGTGTAATGTAAAATAGAGATTTATGATATGATGGAGGCCTCTGTTCCTTTTACCAATGATGCTGAGCTGAAATCAAATACTTTTTGCAGTTCTGTGAAGAAGTGTTTACCAATTATTTGATCTGAAAGGGGGGACCAAGCAGTTTTGTATACTGCTACAAATGGTTAGGGTTAGTGCTGAGCCTTGAAAAGTTTGGTGCCACTGTATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATTTCCACATATTTTGACATATTATTTGGGTCAAAATTTGGGTGAAATTTCAACATGTGTTTGACCATTGTTTTTGGGAAACATATTTAACTTTTTTAGGAGATATGATTTATACCCATATCAAAACTAACCATAGGTTTGTAGTACAAATAAATTGGATCTTTGTTCCAACAAATAACAAGTAGTGTCCAGGACATTAGAGCAATATGGTAGTTCAGAGTGAGTTAGTTCAACAAGTATCATTCCATACATTGTGAAGTAGACAGAGCACATGACATTATTACCCTTAGCCGATTGTTCATCATTTCATCAATAGTCATATCATTACTTTCATATTCACGGAATATTCTATCACTGCTTGGGTGTTTACGGAAAAATTATGTAAATATAGCGCAACAACTACTGTAGAGGGTGTTTTTGTAAACGATAAAGTTTGGTATAGAATTTAAATTTTTAAAAGATTCCAAATAATGAGATTTGACCCAATACTAGTTTTTTCTAGTATTTGGGAATTTGGGTTATTTGCCAAATAATGACAAATTGTATGGACAAACACTATTTGCCAAATTTGCCCCCAAATTTTACATGGGAAATCTATGGCCAAATGGGTCAGAAGAGTGCTCTCTGAGATGGGAACTAGAGCAGTAACTAAGCCTGGGGCATGGGTGTTGCTTTGGTACTTCCGTCAGTGAATGTTCTCTTTGTATGGGAGAATATGCTAAGCGGAAAAATAGAAATGTCCGAATGGGGCATGCAAACACACTAGAACAAGTATGCTGCTAGGAGGAACAAAAGAAGCATATGAATCAGAACTTTACCTTTGAATCAGGGCAGTTATTGTAGAAACACAATTATGTGATAGTTGTGGAGAACTAAAATTCATTGTTTGAAAAACAATGGGCTCAGGGCTGAACCAAAGGTTTGTGTTTATAAGTCTATTGACTGAAGTTAGAATTCCATTAGTGTATGACAGAGTTAACAAAATAAGCATAGGAATCAGAACTTTACCTTTGAATCACGGCAGTTAATGTAGAAACACAATTATGTGATAGTTGTGGAGAACAAAAATTTATTATTTGGAAACAATGAGCTGAACCAAAGGTATGTCTATTAACTGAAGTTAGAATTCCATGAGTGTATGACAGAGGAAAAGTTACCCTGTGAGTGTCGTGATCTATGTTCATACAATAACTGGTTAAGCAATCTTAATTTTTACCATCAGAGGTCCCTCTGAAGATTGTCATCGATGTCTTTACTCTTGTCGAGCGGAGTTGTTCAGAAGGAAGGCTTACATCTTATATAGGGAATTTGGCTCCCTTTCATACTTCAACTCTTTGGAACTTTGATATTTTCTTTCTGCTTTATCGGATTTTGAGGTTCTAATTACATTGAATTATTTGGGCCACCAGAAGCTAGTAGAGAGCTCATATAGTTCTGATGGCAGTCATAACAATTATTATCTTTGGATGTAAATGAGTTACCTTTGCTTCTTTGATGGGGTCTTCCTAATTAATGGGGATGATTATGTTCATGTTCAAAAGAATTTTCTGTGATTGTGCTTGTTTAATCATTAAACTTTAGCGTCAACCACTTGCTACTGCACTGCCCTGTTGCTTCAGACCTCTGGAATATGTTATGTTGTTTTTTTGGTCTATCCTGGGTCAGGGATGCCTTAGAAAGTTGGAGTTCACGGTAAGTTGACAACGCAATCAAGTGTATGTCGATGATGATCCCTGGTACTCTCTTTTGGTATTTATGGAAAGTGGAACAGAAGATGTTTTGATGGAATTTCCACTTCTAGAAATCTTTTGCGAGGCAGATGTCTAGTTAGCCTTTTTAGCTGTCCAAATTGACCCATGTAAATAATTTAGACCTATTCTTGGATTTTGTTAGCTCTATAGTTTAAAAAGAGGCTACAAATCCTTTTTTGTGAGCTTAACTGCTCTCTCCTTGTAATGCTAGCATCTTGTTGATGCCTTAAAAAGAATCTATCTTACTTCACAAAAAAGAAAGCATTAAACTTGCATCATTGAATAGATCTCTGTTGGCTGGTTGGATATACACCTTTATTCAATTTTTTAATCGTCGATCACGGTGTGAACTATATTAATTACTGCCCAACTGCTCGCGTGCTGATTGTACTTTATCCAGCTTGCTTATTACTTGATCTCACCAGTTGTTTGATTGAATGTACATCTTTAGGCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTG</genome_strand>
        <mrna_strand>GCT.......................................................................................................................................GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCATAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCACAAGTGATAACCCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691717" ref_strand="+" ref_description="SGN-E691717 [LH_Ea06N11]">
      <seq>cccgtttttgtggggttttctagatggctgctattatgcaaggcattggtgctgctactgcactaacctcagccagttctttggacgccaagaaggcatttttctccaattctcgcagatctttgtcagttggtgcagagaggaaaggaaggacttttgtggttagatctgatgggggtttgagctatggtttgaaaggacgtggaggaagagctgaacaattaattactaatgctgttgctactaaagaagatactgctgcagcttctacttcatcaaagccagggcatgaactgttgctctttgaggccctccgtgaaggtcttgaagaagaaatggacagagatcccgctgtttgtgtaatgggtgaagatgtcggtcattatggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgacactcccattgctgagaactctttcactggtatgggcattggagctgcaatgaccggtttgcgtccagttattgagggaatgaacatgggatttcttcttctagcctttaatcagatatcaaataactgcggtatgctccactacacatctggtggccagtttaagataccagtcgtcatccgaggtcctggtggagttggtcgacagcttggagcggagcactctcaacgccttgagtcatatttccagtcaattcctggaatccaaatggttgcctgttcaaccccctacaaagccaagggcctgatgaaggctgctatcacaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="38305" stop="29215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38008" g_stop="37880" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.876"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37879" i_stop="37637" i_length="243">
            <donor d_prob="0.983" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37636" g_stop="37522" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="242" r_length="113" r_score="0.896"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="286" r_length="44" r_score="0.886"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337">
            <donor d_prob="1.000" d_score="0.89"/>
            <acceptor a_prob="0.985" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30005" g_stop="29515" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="777" r_length="491" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E691717" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38008" e_stop="37880"/>
          <exon e_start="37636" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
          <exon e_start="30005" e_stop="29515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAGGTTTGTTGCAATTTATTAGTCTTTTAGCTAGTATTCGAAATTGGGTTTTGTTAGTATTGCTTAAATTTATGTTCTTTTTTTGTTGATTATGTTTGTTTGGTTCTCTTTTCTGATTCAGGGTTTATCTAATCTTTGTGTCTTACGGTTGTTTTTGATCGGAAGTATTAATTGGTCCACTAAAAGAATGTTTTATTTTCCAGTTAGTGCTTGTTTACTCTCCAAATTTCAGTCATTTATCTTCCATTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGGGTATATTTACTACTTCTCTAAGTTGTACTTGCATATCTTGACAGTTTAAATTGCTTCCTTCTGGTTGCCACTTCATTTGTCTCTCCTTATCTGAAACTTTATGTACGCGTGGTGGCTTGTCAGCAGGTGAGATTAGTTTTTTTCTTTAAAAATATCTTGATTAAGTTGGGCAAGGTTACATTCTTGTCTTGTAAAGAGGTTGGCTGGTAGGATTATGGTTTTCTTTTATTGTATGATTAAATTCAGCTGCTAATCTCGATGGTGTTGTCAAAGGAAATAGAGAAGTCAATAGAAGTTGCTGTTTTGCTTCAGATTATGCTAATTCATCCTGTGATAAACATGTCTAGTTCTCCTCCTTGTTCTGAATTTTGATAGCAGAAACAAAAGAAAGAGTGATGGTGGGAGTGATGTGTTCTTTTTTGTTTGGATTAGTACTGGCGTACTGGGGATATAAATAAAAAAGAAAAGAAAAGAAAGAAAGAAAGGATGGGCTACATAGTGAACAAAAGTTCAACCCCTCTTACCAACCAAAAGTAGGCTTACATAGAGAAATTCATTTTTAGTATATCTTATATTTAAGCTACACAGGTCTCCCGTAGACTTGAAAAAACGAGTTACTCTTTTTTCACTTTCTTCTTCTGGTACTTCCAATTATTAATTTATTATTTGCTCAAAAATTTTGAAGGTTCTTATTTGTTGTAATTTTTTGCTATGTTTATGGTCAAAAGAAATGATTTCCATAGCCATTCCAATAATACTTCTTTTGATAAGTATATAATTAAACTTTTTTCGAGTCATATCGTTTGGTGTTGGGGATGGGATATATATCTATATATGTATGAGAAAACTTATCCCATCGTTGCTGTATAAATGGTAGGATAAATAATTCCAAAGACTAATTAATATCCCTAACAAAAAGAATGATAAAATAGCCTTGTTGTTTATCCTGGGATTATTATCATCTATCCCTCATACCAAGTGACCCGTAAGAGATTACAATGACAACATACCCAGTGTAATTCCACAAGTGGGTCTGGGAGGGCAAATGTACGCATACCTTCTCTCTATCTTTTAGTAGAGAGGTTGTTTCCAATAGACTCTCGACTCAAAAGTAGTGTCATTAAAGCATGATATAAAAGAAAATAACCACTGCAAAATAGCAAGATAAATGAAACACATGAAGTAATATGTAGTAGAAAAAATGGAGAATAAGAACTATGCAAATACTAGATGTGATTACTAATTAAGGAGAGGATGAGTCGAGGAGATTAACCCTCGAGATTAACCCTCCAACCAAACTCTCACATTTCCTCTTCACCTGTCTGAACCACCTCTGTCTCACTTCTCTAATCTTATCCTTCACGGAGGCCACTTTCGCCTTGTCCTGTGTATATTCATTCCTAATCTCATCTCTCCTAGTATGCCTGCATATCCATTTGGGCATCCTCATTTATGCTATCTTCATCTTCTGTATGTGTGCATTCTTGACTGGCCAACCCTTTACCTCGCACTACAGTCTAGGTTTAACTATCACTCAGTAGAACTTACCTTTTTAAGTCTTGGTGAAACATTTTGTCACACAGTACTCTGGATACAAGTGCCCATTTCATTGTTAATCTTCCCATTTCCTTGGATTATAGACCCAATATACTTGAAACTCTCCCTTGGGTATGACTTGTCTATCAATCTTCACTTCCATCCCCTCCTCCACTATAGGCATTGTGTGATTGAACTTGCAGTCCAGGTCCATTGGCGTAGCCACATGGTTGTATACCCTTCGTTGGAAAAAAAAATATCGTACATAGTACATACAAGTAAGTATATACAAGAAAATGATACATGAAATGATTAAATAACATTTTTTGGACACCCTTGAGATAACATGCTGTTAATGCCCAGTATTTTCACCTCCTTTGAATGGGGAAGTGTTCGTGTGTTCGAATCTCACTAGTTCTACTTTTTGAAACGAGCTTTTGTTGTGCTATTTCTGGACACCCTTCTGGTTCCGCCACTGCCAGTTACTCTATTTTAATCCTACGTTTGCTTAACCTGAAACCTTTAGATTCTAGGGTCTGTTTGCCAAACTACTCTATCATTAACTCCACCACGCGTCTCATAGATATCAATACAGATCGATACTATGTCATTTGCGAATAACATACATCAAGATGCCACCCCTTAAATACGCCACGTCAATTCGTCCATCACTTTGGTTAAAAGAATTGCGATGTATGATTGAAGTGCCCAACAAAATAATGTACACCACATGCTAGCCTGGACTTCGGATTTAGAGGTTGTGATAGGTGGAGTTTTCTAAGTTAAGTCATACACTCACTATATATTTGTGAGGGAGGACTCTGACTTTCCACACTTATCAACCTGAAATCCTAGGAAGGAAAGATGTGTTTCTCTTCTTGCCTAGAAACAAGAGAGGTAATGTTTGACATCTGAAGATCCAAGGCAGAAAAGATTGTCTGTCAATTTGTGTTTGTCAAGAAGATGTGGACCATCTCCTATTGCAGTGTGCTGCTGCTACTAGTTGTAGTTAATGGTTGTGAACTGGTCCAAAATGCCATGGACAACGTTGGGCACATCAATGAATTTGTTGTGCAACTAGACTTTCAGAAGAAGGATGGGAAGACATAGGCATGGTGCACCTTTAGCCCTAGTGTGAGTTCTTTAGAAGGAGAGCAATCAGAGAGCGCTTATAGACTGATTTGACTATCCAACTCTAAGAGATTGACTATCCAAAAAGATAAAAAATAAACCTAAGATGTTGCTGCGAGCCTGCAACTATACAACTATTTTACGAAGATTAATTCGTATTTCTAGCTTGTAAGTATCTGACGGAATTTTAGAGTGTCCTTATCATTTATTTTATTTCATATACACTAGACACAGAGGCGAATCGATGATTTCGAGTCTCTTGGTGCCAAGTAGGTTAATCAGTTAAATTAATTTTAGGCTTCAATCGAATTATTCATCTTTCCGGTCTATGAAATATGAACAATAATGAGATGACAATTTTTGTATTATATATACTACAAATTCTTTAAGCATGGGTCATGCTAATCTTCTCCGCATTATTTCAATTTTATTAGATGTCTCCAACAAAGCAAAAGTTTATCATTTTAATTTTAGATGCTCTTGTTGAAAGTCGAATTCAAGATCGACAACGGAAGATTTTTTTTCTCACTTATATTTGGGAAAAATCACTTTAGCTCAATTGTTTGACTATTTGAACTCTCACCTTACCATTTTCCCTTCCCTTCCCTACCTCCATATAAAAATACAAATTTTCACCCCACATTTGATTGAGATCATAAAGTAAAGAAAGTTAAAACTTTCAATTATACTATAAATATCATAAATATTCATCCTTCATTTATAATTGTACTCGACAAGTTTTTACATTTTGAAAACGATCAATGACAATATCAATGCGTATATTTATAAATGGATCACGTTTTATGTAACACGCTAGTCCAATATACTTATAAATTACTACTCCATATTAAAACAACTATTAGAAACAAACAAAAAAAATAATGTGTCGCTATCATATTAAGGAAGCAAGTTAAAATTGCAAAGGGCCGTCAGCGAGCAAGTTAAAGTTGCAAATTAAAAAACTCCTAGGGCCTCAGCGAGATTCGACCTCGCGATCTCCGTATTAGAATATGACCCTTAGCCAGCCACGCCACAAGGACTTTTGGTTCCCTGGGTGGCACGTTTAATATTTGTAATTATATTGTCGATATATACCTATATATATTAGAGTTTCCGTCGAAGCCCGTGGGAGGTGTATCACCCCCACGAACCTTAGTAGATCCACCCCTGACTAGACAGCTACCATAAGGGCACAACTATATTGAATTCTTAAAATGCATTGTACCTTGCACTCCATTTTACTGCTTGCTGCTTGGATCTTGTCATGTGACTGGCTCACAAAAAGAAGAGAAAGAATGCAACTATAGGATCTCAGAGAGAAACACCTGAGACCAACATAAAATGTGTCTCACTTTTGGGATCTCATCGTCTCCTATTCTTAATGATAAAACAAATTCTCTTCAACTTTATATGGATTCATAGAGGCCCTTGCTAATAGTGTTTGTCAACCCTTGTTTATTTTAGATCCTTACTTAAAGGCCAAGTTATTGCCTTTTTGTTTTATTTGTAACTTCTTACCGAGCTATAACTCCAACACAAATCTACTTTTACGTATGGGGATGTAGGTCAATAACACTTTGTTAGTGTTACCCTAATTTATTTTAGATCTGTACTTAAAGGCCAACTTATTGCCTACTTGTTTTATTTGTTCGAGATTTTACAGTATGTACATAATGCACATACATAAATGAACTATAAGACAATATGTATTATTGTACTTGTACACATCATATGTGTAGTGATTGTTATGTGTACTTGCAATAAAATTGTGCCCAAGTATTTCTTGTCTTGATGTGACTTCATTTTTATGCAAGCTTTTTCTAATATCTAGTAATTCTTGTAGAAATGGCAATTGAGGTTTTGTACTCCTAAAGTTGACACAAAATAGAAAACAAAAAACCGCAAGAACTTCCATTAGTCTTATCTCTTTTTTTGTGTGTAGCATACCTCTAAGAAAGAAACTCATCTATTCCAATTCAAATATGATGATTCACCATTGTTGGTCGATGGAGTTTGGCCTTGTCATGTAGGTGAATTACCTGATTTACACGTCAACACCATATCAGTTCAATTTGGGTCAAAGACATTTAGGAATTATAACAACATAAAGCAAAATGGCGAGTTGATCATCCATATGGAAGATGTACTCAGAAGTATCATTAAGAAAGGTGCTTTGAGATATGCTTTCTTGGTGTAATGTAAAATAGAGATTTATGATATGATGGAGGCCTCTGTTCCTTTTACCAATGATGCTGAGCTGAAATCAAATACTTTTTGCAGTTCTGTGAAGAAGTGTTTACCAATTATTTGATCTGAAAGGGGGGACCAAGCAGTTTTGTATACTGCTACAAATGGTTAGGGTTAGTGCTGAGCCTTGAAAAGTTTGGTGCCACTGTATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATTTCCACATATTTTGACATATTATTTGGGTCAAAATTTGGGTGAAATTTCAACATGTGTTTGACCATTGTTTTTGGGAAACATATTTAACTTTTTTAGGAGATATGATTTATACCCATATCAAAACTAACCATAGGTTTGTAGTACAAATAAATTGGATCTTTGTTCCAACAAATAACAAGTAGTGTCCAGGACATTAGAGCAATATGGTAGTTCAGAGTGAGTTAGTTCAACAAGTATCATTCCATACATTGTGAAGTAGACAGAGCACATGACATTATTACCCTTAGCCGATTGTTCATCATTTCATCAATAGTCATATCATTACTTTCATATTCACGGAATATTCTATCACTGCTTGGGTGTTTACGGAAAAATTATGTAAATATAGCGCAACAACTACTGTAGAGGGTGTTTTTGTAAACGATAAAGTTTGGTATAGAATTTAAATTTTTAAAAGATTCCAAATAATGAGATTTGACCCAATACTAGTTTTTTCTAGTATTTGGGAATTTGGGTTATTTGCCAAATAATGACAAATTGTATGGACAAACACTATTTGCCAAATTTGCCCCCAAATTTTACATGGGAAATCTATGGCCAAATGGGTCAGAAGAGTGCTCTCTGAGATGGGAACTAGAGCAGTAACTAAGCCTGGGGCATGGGTGTTGCTTTGGTACTTCCGTCAGTGAATGTTCTCTTTGTATGGGAGAATATGCTAAGCGGAAAAATAGAAATGTCCGAATGGGGCATGCAAACACACTAGAACAAGTATGCTGCTAGGAGGAACAAAAGAAGCATATGAATCAGAACTTTACCTTTGAATCAGGGCAGTTATTGTAGAAACACAATTATGTGATAGTTGTGGAGAACTAAAATTCATTGTTTGAAAAACAATGGGCTCAGGGCTGAACCAAAGGTTTGTGTTTATAAGTCTATTGACTGAAGTTAGAATTCCATTAGTGTATGACAGAGTTAACAAAATAAGCATAGGAATCAGAACTTTACCTTTGAATCACGGCAGTTAATGTAGAAACACAATTATGTGATAGTTGTGGAGAACAAAAATTTATTATTTGGAAACAATGAGCTGAACCAAAGGTATGTCTATTAACTGAAGTTAGAATTCCATGAGTGTATGACAGAGGAAAAGTTACCCTGTGAGTGTCGTGATCTATGTTCATACAATAACTGGTTAAGCAATCTTAATTTTTACCATCAGAGGTCCCTCTGAAGATTGTCATCGATGTCTTTACTCTTGTCGAGCGGAGTTGTTCAGAAGGAAGGCTTACATCTTATATAGGGAATTTGGCTCCCTTTCATACTTCAACTCTTTGGAACTTTGATATTTTCTTTCTGCTTTATCGGATTTTGAGGTTCTAATTACATTGAATTATTTGGGCCACCAGAAGCTAGTAGAGAGCTCATATAGTTCTGATGGCAGTCATAACAATTATTATCTTTGGATGTAAATGAGTTACCTTTGCTTCTTTGATGGGGTCTTCCTAATTAATGGGGATGATTATGTTCATGTTCAAAAGAATTTTCTGTGATTGTGCTTGTTTAATCATTAAACTTTAGCGTCAACCACTTGCTACTGCACTGCCCTGTTGCTTCAGACCTCTGGAATATGTTATGTTGTTTTTTTGGTCTATCCTGGGTCAGGGATGCCTTAGAAAGTTGGAGTTCACGGTAAGTTGACAACGCAATCAAGTGTATGTCGATGATGATCCCTGGTACTCTCTTTTGGTATTTATGGAAAGTGGAACAGAAGATGTTTTGATGGAATTTCCACTTCTAGAAATCTTTTGCGAGGCAGATGTCTAGTTAGCCTTTTTAGCTGTCCAAATTGACCCATGTAAATAATTTAGACCTATTCTTGGATTTTGTTAGCTCTATAGTTTAAAAAGAGGCTACAAATCCTTTTTTGTGAGCTTAACTGCTCTCTCCTTGTAATGCTAGCATCTTGTTGATGCCTTAAAAAGAATCTATCTTACTTCACAAAAAAGAAAGCATTAAACTTGCATCATTGAATAGATCTCTGTTGGCTGGTTGGATATACACCTTTATTCAATTTTTTAATCGTCGATCACGGTGTGAACTATATTAATTACTGCCCAACTGCTCGCGTGCTGATTGTACTTTATCCAGCTTGCTTATTACTTGATCTCACCAGTTGTTTGATTGAATGTACATCTTTAGGCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTG</genome_strand>
        <mrna_strand>CCCGTTTTTGTGGGGTTTTCTAGATGGCTGCTATTATGCAAGGCATTGGTGCTGCTACTGCACTAACCTCAGCCAGTTCTTTGGACGCCAAGAAGGCATTTTTCTCCAATTCTCGCAGATCTTTGTCAG...................................................................................................................................................................................................................................................TTGG--TGCAGAGAGGAAAGGAAGGACTTTTGTGGTTAGATCTGATGGGGGTTTGAGCTATGGTTTGAAAGGACGTGGAGGAAGAGCTGAACAATTAATTACTAATGCTGTTGCT.......................................................................................................................................ACTAAAGAAGATACTGCTGCAGCTTCTACTTCATCAAAGCCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAACTGTTGCTCTTTGAGGCCCTCCGTGAAGGTCTTGAAGAAGAAATGGACAGAGATCCCGCTGTTTGTGTAATGGGTGAAGATGTCGGTCATTATGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGACACTCCCATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACCGGTTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTAGCCTTTAATCAGATATCAAATAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTCGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCGGAGCACTCTCAACGCCTTGAGTCATATTTCCAGTCAATTCCTGGAATCCAAATGGTTGCCTGTTCAACCCCCTACAAAGCCAAGGGCCTGATGAAGGCTGCTATCACAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728187" ref_strand="+" ref_description="SGN-E728187 [LA17AA01]">
      <seq>gttttcttcgccgcaactcatttttttctctattcactgagaatatatttatagttatggctgctattatacaaggaattggtgctgctactgcactaacatcagccaattctttggataccaagaagtcacttttcgctaattctcgcagatctttgtcagagaggaaaggaaggttatttgtggctagatctgatgggcgtttaagcagtggtttgaatggacgtggaggaagagcttaacaattaatcactaatgctgttgctgcaaaagaagatgctgctgcagcttctacttcattcaagccagggcatgaactgttgctctttgaggccctccgcgaaggcctggaagaagagatggacagagatcccactgtttgtgtaatgggtgaagatgtcggtcattacggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgatactcctattgctgagaactctttcactggtatgggcattggagctgcaatgactggcttgcgtccagttattgagggaatgaacatgggatttcttcttctggccttcaaccagatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagttgtcatccgaggtcctggtggagttggtcgacagcttggagcagagcactctcaacgccttgagtcatacttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="38430" stop="29295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38130" g_stop="38075" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38074" i_stop="37986" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37985" g_stop="37880" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="162" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37625" g_stop="37522" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="266" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="310" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30005" g_stop="29595" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="721" r_length="411" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E728187" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38130" e_stop="38075"/>
          <exon e_start="37985" e_stop="37880"/>
          <exon e_start="37625" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
          <exon e_start="30005" e_stop="29595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAGGTTTGTTGCAATTTATTAGTCTTTTAGCTAGTATTCGAAATTGGGTTTTGTTAGTATTGCTTAAATTTATGTTCTTTTTTTGTTGATTATGTTTGTTTGGTTCTCTTTTCTGATTCAGGGTTTATCTAATCTTTGTGTCTTACGGTTGTTTTTGATCGGAAGTATTAATTGGTCCACTAAAAGAATGTTTTATTTTCCAGTTAGTGCTTGTTTACTCTCCAAATTTCAGTCATTTATCTTCCATTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGGGTATATTTACTACTTCTCTAAGTTGTACTTGCATATCTTGACAGTTTAAATTGCTTCCTTCTGGTTGCCACTTCATTTGTCTCTCCTTATCTGAAACTTTATGTACGCGTGGTGGCTTGTCAGCAGGTGAGATTAGTTTTTTTCTTTAAAAATATCTTGATTAAGTTGGGCAAGGTTACATTCTTGTCTTGTAAAGAGGTTGGCTGGTAGGATTATGGTTTTCTTTTATTGTATGATTAAATTCAGCTGCTAATCTCGATGGTGTTGTCAAAGGAAATAGAGAAGTCAATAGAAGTTGCTGTTTTGCTTCAGATTATGCTAATTCATCCTGTGATAAACATGTCTAGTTCTCCTCCTTGTTCTGAATTTTGATAGCAGAAACAAAAGAAAGAGTGATGGTGGGAGTGATGTGTTCTTTTTTGTTTGGATTAGTACTGGCGTACTGGGGATATAAATAAAAAAGAAAAGAAAAGAAAGAAAGAAAGGATGGGCTACATAGTGAACAAAAGTTCAACCCCTCTTACCAACCAAAAGTAGGCTTACATAGAGAAATTCATTTTTAGTATATCTTATATTTAAGCTACACAGGTCTCCCGTAGACTTGAAAAAACGAGTTACTCTTTTTTCACTTTCTTCTTCTGGTACTTCCAATTATTAATTTATTATTTGCTCAAAAATTTTGAAGGTTCTTATTTGTTGTAATTTTTTGCTATGTTTATGGTCAAAAGAAATGATTTCCATAGCCATTCCAATAATACTTCTTTTGATAAGTATATAATTAAACTTTTTTCGAGTCATATCGTTTGGTGTTGGGGATGGGATATATATCTATATATGTATGAGAAAACTTATCCCATCGTTGCTGTATAAATGGTAGGATAAATAATTCCAAAGACTAATTAATATCCCTAACAAAAAGAATGATAAAATAGCCTTGTTGTTTATCCTGGGATTATTATCATCTATCCCTCATACCAAGTGACCCGTAAGAGATTACAATGACAACATACCCAGTGTAATTCCACAAGTGGGTCTGGGAGGGCAAATGTACGCATACCTTCTCTCTATCTTTTAGTAGAGAGGTTGTTTCCAATAGACTCTCGACTCAAAAGTAGTGTCATTAAAGCATGATATAAAAGAAAATAACCACTGCAAAATAGCAAGATAAATGAAACACATGAAGTAATATGTAGTAGAAAAAATGGAGAATAAGAACTATGCAAATACTAGATGTGATTACTAATTAAGGAGAGGATGAGTCGAGGAGATTAACCCTCGAGATTAACCCTCCAACCAAACTCTCACATTTCCTCTTCACCTGTCTGAACCACCTCTGTCTCACTTCTCTAATCTTATCCTTCACGGAGGCCACTTTCGCCTTGTCCTGTGTATATTCATTCCTAATCTCATCTCTCCTAGTATGCCTGCATATCCATTTGGGCATCCTCATTTATGCTATCTTCATCTTCTGTATGTGTGCATTCTTGACTGGCCAACCCTTTACCTCGCACTACAGTCTAGGTTTAACTATCACTCAGTAGAACTTACCTTTTTAAGTCTTGGTGAAACATTTTGTCACACAGTACTCTGGATACAAGTGCCCATTTCATTGTTAATCTTCCCATTTCCTTGGATTATAGACCCAATATACTTGAAACTCTCCCTTGGGTATGACTTGTCTATCAATCTTCACTTCCATCCCCTCCTCCACTATAGGCATTGTGTGATTGAACTTGCAGTCCAGGTCCATTGGCGTAGCCACATGGTTGTATACCCTTCGTTGGAAAAAAAAATATCGTACATAGTACATACAAGTAAGTATATACAAGAAAATGATACATGAAATGATTAAATAACATTTTTTGGACACCCTTGAGATAACATGCTGTTAATGCCCAGTATTTTCACCTCCTTTGAATGGGGAAGTGTTCGTGTGTTCGAATCTCACTAGTTCTACTTTTTGAAACGAGCTTTTGTTGTGCTATTTCTGGACACCCTTCTGGTTCCGCCACTGCCAGTTACTCTATTTTAATCCTACGTTTGCTTAACCTGAAACCTTTAGATTCTAGGGTCTGTTTGCCAAACTACTCTATCATTAACTCCACCACGCGTCTCATAGATATCAATACAGATCGATACTATGTCATTTGCGAATAACATACATCAAGATGCCACCCCTTAAATACGCCACGTCAATTCGTCCATCACTTTGGTTAAAAGAATTGCGATGTATGATTGAAGTGCCCAACAAAATAATGTACACCACATGCTAGCCTGGACTTCGGATTTAGAGGTTGTGATAGGTGGAGTTTTCTAAGTTAAGTCATACACTCACTATATATTTGTGAGGGAGGACTCTGACTTTCCACACTTATCAACCTGAAATCCTAGGAAGGAAAGATGTGTTTCTCTTCTTGCCTAGAAACAAGAGAGGTAATGTTTGACATCTGAAGATCCAAGGCAGAAAAGATTGTCTGTCAATTTGTGTTTGTCAAGAAGATGTGGACCATCTCCTATTGCAGTGTGCTGCTGCTACTAGTTGTAGTTAATGGTTGTGAACTGGTCCAAAATGCCATGGACAACGTTGGGCACATCAATGAATTTGTTGTGCAACTAGACTTTCAGAAGAAGGATGGGAAGACATAGGCATGGTGCACCTTTAGCCCTAGTGTGAGTTCTTTAGAAGGAGAGCAATCAGAGAGCGCTTATAGACTGATTTGACTATCCAACTCTAAGAGATTGACTATCCAAAAAGATAAAAAATAAACCTAAGATGTTGCTGCGAGCCTGCAACTATACAACTATTTTACGAAGATTAATTCGTATTTCTAGCTTGTAAGTATCTGACGGAATTTTAGAGTGTCCTTATCATTTATTTTATTTCATATACACTAGACACAGAGGCGAATCGATGATTTCGAGTCTCTTGGTGCCAAGTAGGTTAATCAGTTAAATTAATTTTAGGCTTCAATCGAATTATTCATCTTTCCGGTCTATGAAATATGAACAATAATGAGATGACAATTTTTGTATTATATATACTACAAATTCTTTAAGCATGGGTCATGCTAATCTTCTCCGCATTATTTCAATTTTATTAGATGTCTCCAACAAAGCAAAAGTTTATCATTTTAATTTTAGATGCTCTTGTTGAAAGTCGAATTCAAGATCGACAACGGAAGATTTTTTTTCTCACTTATATTTGGGAAAAATCACTTTAGCTCAATTGTTTGACTATTTGAACTCTCACCTTACCATTTTCCCTTCCCTTCCCTACCTCCATATAAAAATACAAATTTTCACCCCACATTTGATTGAGATCATAAAGTAAAGAAAGTTAAAACTTTCAATTATACTATAAATATCATAAATATTCATCCTTCATTTATAATTGTACTCGACAAGTTTTTACATTTTGAAAACGATCAATGACAATATCAATGCGTATATTTATAAATGGATCACGTTTTATGTAACACGCTAGTCCAATATACTTATAAATTACTACTCCATATTAAAACAACTATTAGAAACAAACAAAAAAAATAATGTGTCGCTATCATATTAAGGAAGCAAGTTAAAATTGCAAAGGGCCGTCAGCGAGCAAGTTAAAGTTGCAAATTAAAAAACTCCTAGGGCCTCAGCGAGATTCGACCTCGCGATCTCCGTATTAGAATATGACCCTTAGCCAGCCACGCCACAAGGACTTTTGGTTCCCTGGGTGGCACGTTTAATATTTGTAATTATATTGTCGATATATACCTATATATATTAGAGTTTCCGTCGAAGCCCGTGGGAGGTGTATCACCCCCACGAACCTTAGTAGATCCACCCCTGACTAGACAGCTACCATAAGGGCACAACTATATTGAATTCTTAAAATGCATTGTACCTTGCACTCCATTTTACTGCTTGCTGCTTGGATCTTGTCATGTGACTGGCTCACAAAAAGAAGAGAAAGAATGCAACTATAGGATCTCAGAGAGAAACACCTGAGACCAACATAAAATGTGTCTCACTTTTGGGATCTCATCGTCTCCTATTCTTAATGATAAAACAAATTCTCTTCAACTTTATATGGATTCATAGAGGCCCTTGCTAATAGTGTTTGTCAACCCTTGTTTATTTTAGATCCTTACTTAAAGGCCAAGTTATTGCCTTTTTGTTTTATTTGTAACTTCTTACCGAGCTATAACTCCAACACAAATCTACTTTTACGTATGGGGATGTAGGTCAATAACACTTTGTTAGTGTTACCCTAATTTATTTTAGATCTGTACTTAAAGGCCAACTTATTGCCTACTTGTTTTATTTGTTCGAGATTTTACAGTATGTACATAATGCACATACATAAATGAACTATAAGACAATATGTATTATTGTACTTGTACACATCATATGTGTAGTGATTGTTATGTGTACTTGCAATAAAATTGTGCCCAAGTATTTCTTGTCTTGATGTGACTTCATTTTTATGCAAGCTTTTTCTAATATCTAGTAATTCTTGTAGAAATGGCAATTGAGGTTTTGTACTCCTAAAGTTGACACAAAATAGAAAACAAAAAACCGCAAGAACTTCCATTAGTCTTATCTCTTTTTTTGTGTGTAGCATACCTCTAAGAAAGAAACTCATCTATTCCAATTCAAATATGATGATTCACCATTGTTGGTCGATGGAGTTTGGCCTTGTCATGTAGGTGAATTACCTGATTTACACGTCAACACCATATCAGTTCAATTTGGGTCAAAGACATTTAGGAATTATAACAACATAAAGCAAAATGGCGAGTTGATCATCCATATGGAAGATGTACTCAGAAGTATCATTAAGAAAGGTGCTTTGAGATATGCTTTCTTGGTGTAATGTAAAATAGAGATTTATGATATGATGGAGGCCTCTGTTCCTTTTACCAATGATGCTGAGCTGAAATCAAATACTTTTTGCAGTTCTGTGAAGAAGTGTTTACCAATTATTTGATCTGAAAGGGGGGACCAAGCAGTTTTGTATACTGCTACAAATGGTTAGGGTTAGTGCTGAGCCTTGAAAAGTTTGGTGCCACTGTATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATTTCCACATATTTTGACATATTATTTGGGTCAAAATTTGGGTGAAATTTCAACATGTGTTTGACCATTGTTTTTGGGAAACATATTTAACTTTTTTAGGAGATATGATTTATACCCATATCAAAACTAACCATAGGTTTGTAGTACAAATAAATTGGATCTTTGTTCCAACAAATAACAAGTAGTGTCCAGGACATTAGAGCAATATGGTAGTTCAGAGTGAGTTAGTTCAACAAGTATCATTCCATACATTGTGAAGTAGACAGAGCACATGACATTATTACCCTTAGCCGATTGTTCATCATTTCATCAATAGTCATATCATTACTTTCATATTCACGGAATATTCTATCACTGCTTGGGTGTTTACGGAAAAATTATGTAAATATAGCGCAACAACTACTGTAGAGGGTGTTTTTGTAAACGATAAAGTTTGGTATAGAATTTAAATTTTTAAAAGATTCCAAATAATGAGATTTGACCCAATACTAGTTTTTTCTAGTATTTGGGAATTTGGGTTATTTGCCAAATAATGACAAATTGTATGGACAAACACTATTTGCCAAATTTGCCCCCAAATTTTACATGGGAAATCTATGGCCAAATGGGTCAGAAGAGTGCTCTCTGAGATGGGAACTAGAGCAGTAACTAAGCCTGGGGCATGGGTGTTGCTTTGGTACTTCCGTCAGTGAATGTTCTCTTTGTATGGGAGAATATGCTAAGCGGAAAAATAGAAATGTCCGAATGGGGCATGCAAACACACTAGAACAAGTATGCTGCTAGGAGGAACAAAAGAAGCATATGAATCAGAACTTTACCTTTGAATCAGGGCAGTTATTGTAGAAACACAATTATGTGATAGTTGTGGAGAACTAAAATTCATTGTTTGAAAAACAATGGGCTCAGGGCTGAACCAAAGGTTTGTGTTTATAAGTCTATTGACTGAAGTTAGAATTCCATTAGTGTATGACAGAGTTAACAAAATAAGCATAGGAATCAGAACTTTACCTTTGAATCACGGCAGTTAATGTAGAAACACAATTATGTGATAGTTGTGGAGAACAAAAATTTATTATTTGGAAACAATGAGCTGAACCAAAGGTATGTCTATTAACTGAAGTTAGAATTCCATGAGTGTATGACAGAGGAAAAGTTACCCTGTGAGTGTCGTGATCTATGTTCATACAATAACTGGTTAAGCAATCTTAATTTTTACCATCAGAGGTCCCTCTGAAGATTGTCATCGATGTCTTTACTCTTGTCGAGCGGAGTTGTTCAGAAGGAAGGCTTACATCTTATATAGGGAATTTGGCTCCCTTTCATACTTCAACTCTTTGGAACTTTGATATTTTCTTTCTGCTTTATCGGATTTTGAGGTTCTAATTACATTGAATTATTTGGGCCACCAGAAGCTAGTAGAGAGCTCATATAGTTCTGATGGCAGTCATAACAATTATTATCTTTGGATGTAAATGAGTTACCTTTGCTTCTTTGATGGGGTCTTCCTAATTAATGGGGATGATTATGTTCATGTTCAAAAGAATTTTCTGTGATTGTGCTTGTTTAATCATTAAACTTTAGCGTCAACCACTTGCTACTGCACTGCCCTGTTGCTTCAGACCTCTGGAATATGTTATGTTGTTTTTTTGGTCTATCCTGGGTCAGGGATGCCTTAGAAAGTTGGAGTTCACGGTAAGTTGACAACGCAATCAAGTGTATGTCGATGATGATCCCTGGTACTCTCTTTTGGTATTTATGGAAAGTGGAACAGAAGATGTTTTGATGGAATTTCCACTTCTAGAAATCTTTTGCGAGGCAGATGTCTAGTTAGCCTTTTTAGCTGTCCAAATTGACCCATGTAAATAATTTAGACCTATTCTTGGATTTTGTTAGCTCTATAGTTTAAAAAGAGGCTACAAATCCTTTTTTGTGAGCTTAACTGCTCTCTCCTTGTAATGCTAGCATCTTGTTGATGCCTTAAAAAGAATCTATCTTACTTCACAAAAAAGAAAGCATTAAACTTGCATCATTGAATAGATCTCTGTTGGCTGGTTGGATATACACCTTTATTCAATTTTTTAATCGTCGATCACGGTGTGAACTATATTAATTACTGCCCAACTGCTCGCGTGCTGATTGTACTTTATCCAGCTTGCTTATTACTTGATCTCACCAGTTGTTTGATTGAATGTACATCTTTAGGCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCA</genome_strand>
        <mrna_strand>GTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTT.........................................................................................ATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG..............................................................................................................................................................................................................................................................AGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTTAACAATTAATCACTAATGCTGTTGCT.......................................................................................................................................GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E687640" ref_strand="+" ref_description="SGN-E687640 [T3_tus_79_D08]">
      <seq>cgatctttccttagattaaatcgccacaacctccttgagcactttgttttcttcgccgcaactcatttttttctctattcactgagaatatatttatagttgtaagggtcatttgaatcatcattctgatctgcattttctcttcgtttgttcgaatcaagaagctaattttctttgtggggtttactagatggctgctattatacaaggaattggtgctgctactgcactaacatcagccaattctttggataccaagaagtcacttttcgctaattctcgcagatctttgtcagagaggaaaggaaggttatttgtggctagatctgatgggcgtttaagcagtggtttgaatggacgtggaggaagagctgaacaattaatcactaatgctgttgctgcaaaagaagatgctgctgcagcttctacttcattcaagccagggcatgaactgttgctctttgaggccctccgcgaaggcctggaagaagagatggacagagatcccactgtttgtgtaatgggtgaagatgtcggtcattacggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgatactcctattgctgagaactctttcactggtatgggcattggagctgcaatgactggcttgcgtccagttattgagggaatgaacatgggatttcttcttctggccttcaaccagatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagttgtcatccgaggtcctggtggaattggtcgacagcttggaacagagcactctcaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="38473" stop="29313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38175" g_stop="37880" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37625" g_stop="37522" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="400" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="444" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30005" g_stop="29613" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="837" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E687640" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38175" e_stop="37880"/>
          <exon e_start="37625" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
          <exon e_start="30005" e_stop="29613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAGGTTTGTTGCAATTTATTAGTCTTTTAGCTAGTATTCGAAATTGGGTTTTGTTAGTATTGCTTAAATTTATGTTCTTTTTTTGTTGATTATGTTTGTTTGGTTCTCTTTTCTGATTCAGGGTTTATCTAATCTTTGTGTCTTACGGTTGTTTTTGATCGGAAGTATTAATTGGTCCACTAAAAGAATGTTTTATTTTCCAGTTAGTGCTTGTTTACTCTCCAAATTTCAGTCATTTATCTTCCATTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGGGTATATTTACTACTTCTCTAAGTTGTACTTGCATATCTTGACAGTTTAAATTGCTTCCTTCTGGTTGCCACTTCATTTGTCTCTCCTTATCTGAAACTTTATGTACGCGTGGTGGCTTGTCAGCAGGTGAGATTAGTTTTTTTCTTTAAAAATATCTTGATTAAGTTGGGCAAGGTTACATTCTTGTCTTGTAAAGAGGTTGGCTGGTAGGATTATGGTTTTCTTTTATTGTATGATTAAATTCAGCTGCTAATCTCGATGGTGTTGTCAAAGGAAATAGAGAAGTCAATAGAAGTTGCTGTTTTGCTTCAGATTATGCTAATTCATCCTGTGATAAACATGTCTAGTTCTCCTCCTTGTTCTGAATTTTGATAGCAGAAACAAAAGAAAGAGTGATGGTGGGAGTGATGTGTTCTTTTTTGTTTGGATTAGTACTGGCGTACTGGGGATATAAATAAAAAAGAAAAGAAAAGAAAGAAAGAAAGGATGGGCTACATAGTGAACAAAAGTTCAACCCCTCTTACCAACCAAAAGTAGGCTTACATAGAGAAATTCATTTTTAGTATATCTTATATTTAAGCTACACAGGTCTCCCGTAGACTTGAAAAAACGAGTTACTCTTTTTTCACTTTCTTCTTCTGGTACTTCCAATTATTAATTTATTATTTGCTCAAAAATTTTGAAGGTTCTTATTTGTTGTAATTTTTTGCTATGTTTATGGTCAAAAGAAATGATTTCCATAGCCATTCCAATAATACTTCTTTTGATAAGTATATAATTAAACTTTTTTCGAGTCATATCGTTTGGTGTTGGGGATGGGATATATATCTATATATGTATGAGAAAACTTATCCCATCGTTGCTGTATAAATGGTAGGATAAATAATTCCAAAGACTAATTAATATCCCTAACAAAAAGAATGATAAAATAGCCTTGTTGTTTATCCTGGGATTATTATCATCTATCCCTCATACCAAGTGACCCGTAAGAGATTACAATGACAACATACCCAGTGTAATTCCACAAGTGGGTCTGGGAGGGCAAATGTACGCATACCTTCTCTCTATCTTTTAGTAGAGAGGTTGTTTCCAATAGACTCTCGACTCAAAAGTAGTGTCATTAAAGCATGATATAAAAGAAAATAACCACTGCAAAATAGCAAGATAAATGAAACACATGAAGTAATATGTAGTAGAAAAAATGGAGAATAAGAACTATGCAAATACTAGATGTGATTACTAATTAAGGAGAGGATGAGTCGAGGAGATTAACCCTCGAGATTAACCCTCCAACCAAACTCTCACATTTCCTCTTCACCTGTCTGAACCACCTCTGTCTCACTTCTCTAATCTTATCCTTCACGGAGGCCACTTTCGCCTTGTCCTGTGTATATTCATTCCTAATCTCATCTCTCCTAGTATGCCTGCATATCCATTTGGGCATCCTCATTTATGCTATCTTCATCTTCTGTATGTGTGCATTCTTGACTGGCCAACCCTTTACCTCGCACTACAGTCTAGGTTTAACTATCACTCAGTAGAACTTACCTTTTTAAGTCTTGGTGAAACATTTTGTCACACAGTACTCTGGATACAAGTGCCCATTTCATTGTTAATCTTCCCATTTCCTTGGATTATAGACCCAATATACTTGAAACTCTCCCTTGGGTATGACTTGTCTATCAATCTTCACTTCCATCCCCTCCTCCACTATAGGCATTGTGTGATTGAACTTGCAGTCCAGGTCCATTGGCGTAGCCACATGGTTGTATACCCTTCGTTGGAAAAAAAAATATCGTACATAGTACATACAAGTAAGTATATACAAGAAAATGATACATGAAATGATTAAATAACATTTTTTGGACACCCTTGAGATAACATGCTGTTAATGCCCAGTATTTTCACCTCCTTTGAATGGGGAAGTGTTCGTGTGTTCGAATCTCACTAGTTCTACTTTTTGAAACGAGCTTTTGTTGTGCTATTTCTGGACACCCTTCTGGTTCCGCCACTGCCAGTTACTCTATTTTAATCCTACGTTTGCTTAACCTGAAACCTTTAGATTCTAGGGTCTGTTTGCCAAACTACTCTATCATTAACTCCACCACGCGTCTCATAGATATCAATACAGATCGATACTATGTCATTTGCGAATAACATACATCAAGATGCCACCCCTTAAATACGCCACGTCAATTCGTCCATCACTTTGGTTAAAAGAATTGCGATGTATGATTGAAGTGCCCAACAAAATAATGTACACCACATGCTAGCCTGGACTTCGGATTTAGAGGTTGTGATAGGTGGAGTTTTCTAAGTTAAGTCATACACTCACTATATATTTGTGAGGGAGGACTCTGACTTTCCACACTTATCAACCTGAAATCCTAGGAAGGAAAGATGTGTTTCTCTTCTTGCCTAGAAACAAGAGAGGTAATGTTTGACATCTGAAGATCCAAGGCAGAAAAGATTGTCTGTCAATTTGTGTTTGTCAAGAAGATGTGGACCATCTCCTATTGCAGTGTGCTGCTGCTACTAGTTGTAGTTAATGGTTGTGAACTGGTCCAAAATGCCATGGACAACGTTGGGCACATCAATGAATTTGTTGTGCAACTAGACTTTCAGAAGAAGGATGGGAAGACATAGGCATGGTGCACCTTTAGCCCTAGTGTGAGTTCTTTAGAAGGAGAGCAATCAGAGAGCGCTTATAGACTGATTTGACTATCCAACTCTAAGAGATTGACTATCCAAAAAGATAAAAAATAAACCTAAGATGTTGCTGCGAGCCTGCAACTATACAACTATTTTACGAAGATTAATTCGTATTTCTAGCTTGTAAGTATCTGACGGAATTTTAGAGTGTCCTTATCATTTATTTTATTTCATATACACTAGACACAGAGGCGAATCGATGATTTCGAGTCTCTTGGTGCCAAGTAGGTTAATCAGTTAAATTAATTTTAGGCTTCAATCGAATTATTCATCTTTCCGGTCTATGAAATATGAACAATAATGAGATGACAATTTTTGTATTATATATACTACAAATTCTTTAAGCATGGGTCATGCTAATCTTCTCCGCATTATTTCAATTTTATTAGATGTCTCCAACAAAGCAAAAGTTTATCATTTTAATTTTAGATGCTCTTGTTGAAAGTCGAATTCAAGATCGACAACGGAAGATTTTTTTTCTCACTTATATTTGGGAAAAATCACTTTAGCTCAATTGTTTGACTATTTGAACTCTCACCTTACCATTTTCCCTTCCCTTCCCTACCTCCATATAAAAATACAAATTTTCACCCCACATTTGATTGAGATCATAAAGTAAAGAAAGTTAAAACTTTCAATTATACTATAAATATCATAAATATTCATCCTTCATTTATAATTGTACTCGACAAGTTTTTACATTTTGAAAACGATCAATGACAATATCAATGCGTATATTTATAAATGGATCACGTTTTATGTAACACGCTAGTCCAATATACTTATAAATTACTACTCCATATTAAAACAACTATTAGAAACAAACAAAAAAAATAATGTGTCGCTATCATATTAAGGAAGCAAGTTAAAATTGCAAAGGGCCGTCAGCGAGCAAGTTAAAGTTGCAAATTAAAAAACTCCTAGGGCCTCAGCGAGATTCGACCTCGCGATCTCCGTATTAGAATATGACCCTTAGCCAGCCACGCCACAAGGACTTTTGGTTCCCTGGGTGGCACGTTTAATATTTGTAATTATATTGTCGATATATACCTATATATATTAGAGTTTCCGTCGAAGCCCGTGGGAGGTGTATCACCCCCACGAACCTTAGTAGATCCACCCCTGACTAGACAGCTACCATAAGGGCACAACTATATTGAATTCTTAAAATGCATTGTACCTTGCACTCCATTTTACTGCTTGCTGCTTGGATCTTGTCATGTGACTGGCTCACAAAAAGAAGAGAAAGAATGCAACTATAGGATCTCAGAGAGAAACACCTGAGACCAACATAAAATGTGTCTCACTTTTGGGATCTCATCGTCTCCTATTCTTAATGATAAAACAAATTCTCTTCAACTTTATATGGATTCATAGAGGCCCTTGCTAATAGTGTTTGTCAACCCTTGTTTATTTTAGATCCTTACTTAAAGGCCAAGTTATTGCCTTTTTGTTTTATTTGTAACTTCTTACCGAGCTATAACTCCAACACAAATCTACTTTTACGTATGGGGATGTAGGTCAATAACACTTTGTTAGTGTTACCCTAATTTATTTTAGATCTGTACTTAAAGGCCAACTTATTGCCTACTTGTTTTATTTGTTCGAGATTTTACAGTATGTACATAATGCACATACATAAATGAACTATAAGACAATATGTATTATTGTACTTGTACACATCATATGTGTAGTGATTGTTATGTGTACTTGCAATAAAATTGTGCCCAAGTATTTCTTGTCTTGATGTGACTTCATTTTTATGCAAGCTTTTTCTAATATCTAGTAATTCTTGTAGAAATGGCAATTGAGGTTTTGTACTCCTAAAGTTGACACAAAATAGAAAACAAAAAACCGCAAGAACTTCCATTAGTCTTATCTCTTTTTTTGTGTGTAGCATACCTCTAAGAAAGAAACTCATCTATTCCAATTCAAATATGATGATTCACCATTGTTGGTCGATGGAGTTTGGCCTTGTCATGTAGGTGAATTACCTGATTTACACGTCAACACCATATCAGTTCAATTTGGGTCAAAGACATTTAGGAATTATAACAACATAAAGCAAAATGGCGAGTTGATCATCCATATGGAAGATGTACTCAGAAGTATCATTAAGAAAGGTGCTTTGAGATATGCTTTCTTGGTGTAATGTAAAATAGAGATTTATGATATGATGGAGGCCTCTGTTCCTTTTACCAATGATGCTGAGCTGAAATCAAATACTTTTTGCAGTTCTGTGAAGAAGTGTTTACCAATTATTTGATCTGAAAGGGGGGACCAAGCAGTTTTGTATACTGCTACAAATGGTTAGGGTTAGTGCTGAGCCTTGAAAAGTTTGGTGCCACTGTATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATTTCCACATATTTTGACATATTATTTGGGTCAAAATTTGGGTGAAATTTCAACATGTGTTTGACCATTGTTTTTGGGAAACATATTTAACTTTTTTAGGAGATATGATTTATACCCATATCAAAACTAACCATAGGTTTGTAGTACAAATAAATTGGATCTTTGTTCCAACAAATAACAAGTAGTGTCCAGGACATTAGAGCAATATGGTAGTTCAGAGTGAGTTAGTTCAACAAGTATCATTCCATACATTGTGAAGTAGACAGAGCACATGACATTATTACCCTTAGCCGATTGTTCATCATTTCATCAATAGTCATATCATTACTTTCATATTCACGGAATATTCTATCACTGCTTGGGTGTTTACGGAAAAATTATGTAAATATAGCGCAACAACTACTGTAGAGGGTGTTTTTGTAAACGATAAAGTTTGGTATAGAATTTAAATTTTTAAAAGATTCCAAATAATGAGATTTGACCCAATACTAGTTTTTTCTAGTATTTGGGAATTTGGGTTATTTGCCAAATAATGACAAATTGTATGGACAAACACTATTTGCCAAATTTGCCCCCAAATTTTACATGGGAAATCTATGGCCAAATGGGTCAGAAGAGTGCTCTCTGAGATGGGAACTAGAGCAGTAACTAAGCCTGGGGCATGGGTGTTGCTTTGGTACTTCCGTCAGTGAATGTTCTCTTTGTATGGGAGAATATGCTAAGCGGAAAAATAGAAATGTCCGAATGGGGCATGCAAACACACTAGAACAAGTATGCTGCTAGGAGGAACAAAAGAAGCATATGAATCAGAACTTTACCTTTGAATCAGGGCAGTTATTGTAGAAACACAATTATGTGATAGTTGTGGAGAACTAAAATTCATTGTTTGAAAAACAATGGGCTCAGGGCTGAACCAAAGGTTTGTGTTTATAAGTCTATTGACTGAAGTTAGAATTCCATTAGTGTATGACAGAGTTAACAAAATAAGCATAGGAATCAGAACTTTACCTTTGAATCACGGCAGTTAATGTAGAAACACAATTATGTGATAGTTGTGGAGAACAAAAATTTATTATTTGGAAACAATGAGCTGAACCAAAGGTATGTCTATTAACTGAAGTTAGAATTCCATGAGTGTATGACAGAGGAAAAGTTACCCTGTGAGTGTCGTGATCTATGTTCATACAATAACTGGTTAAGCAATCTTAATTTTTACCATCAGAGGTCCCTCTGAAGATTGTCATCGATGTCTTTACTCTTGTCGAGCGGAGTTGTTCAGAAGGAAGGCTTACATCTTATATAGGGAATTTGGCTCCCTTTCATACTTCAACTCTTTGGAACTTTGATATTTTCTTTCTGCTTTATCGGATTTTGAGGTTCTAATTACATTGAATTATTTGGGCCACCAGAAGCTAGTAGAGAGCTCATATAGTTCTGATGGCAGTCATAACAATTATTATCTTTGGATGTAAATGAGTTACCTTTGCTTCTTTGATGGGGTCTTCCTAATTAATGGGGATGATTATGTTCATGTTCAAAAGAATTTTCTGTGATTGTGCTTGTTTAATCATTAAACTTTAGCGTCAACCACTTGCTACTGCACTGCCCTGTTGCTTCAGACCTCTGGAATATGTTATGTTGTTTTTTTGGTCTATCCTGGGTCAGGGATGCCTTAGAAAGTTGGAGTTCACGGTAAGTTGACAACGCAATCAAGTGTATGTCGATGATGATCCCTGGTACTCTCTTTTGGTATTTATGGAAAGTGGAACAGAAGATGTTTTGATGGAATTTCCACTTCTAGAAATCTTTTGCGAGGCAGATGTCTAGTTAGCCTTTTTAGCTGTCCAAATTGACCCATGTAAATAATTTAGACCTATTCTTGGATTTTGTTAGCTCTATAGTTTAAAAAGAGGCTACAAATCCTTTTTTGTGAGCTTAACTGCTCTCTCCTTGTAATGCTAGCATCTTGTTGATGCCTTAAAAAGAATCTATCTTACTTCACAAAAAAGAAAGCATTAAACTTGCATCATTGAATAGATCTCTGTTGGCTGGTTGGATATACACCTTTATTCAATTTTTTAATCGTCGATCACGGTGTGAACTATATTAATTACTGCCCAACTGCTCGCGTGCTGATTGTACTTTATCCAGCTTGCTTATTACTTGATCTCACCAGTTGTTTGATTGAATGTACATCTTTAGGCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACG</genome_strand>
        <mrna_strand>CGATCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG..............................................................................................................................................................................................................................................................AGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT.......................................................................................................................................GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729789" ref_strand="+" ref_description="SGN-E729789 [LA22AD12]">
      <seq>cctgtcttttgctcttttctaatctttccttagattaaatcgccacaacctccttgagcactttgttttcttcgccgcaactcatttttttctctattcactgagaatatatttatagttgtaagggtcatttgaatcatcattctgatctgcattttctcttcgtttgttcgaatcaagaagctaattttctttgtggggtttactagatggctgctattatacaaggaattggtgctgctactgcactaacatcagccaattctttggataccaagaagtcacttttcgctaattctcgcagatctttgtcagagaggaaaggaaggttatttgtggctagatctgatgggcgtttaagcagtggtttgaatggacgtggaggaagagctgaacaattaatcactaatgctgttgctgcaaaagaagatgctgctgcagcttctacttcattcaagccagggcatgaactgttgctctttgaggccctccgcgaaggcctggaagaagagatggacagagatcccactgtttgtgtaatgggtgaagatgtcggtcattacggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgatactcctattgctgagaactctttcactggtatgggcattggagctgcaatgactggcttgcgtccagttattgagggaatgaacatgggatttcttcttctggccttcaacaagatatctaacaactgcggtatgctccactacacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="38494" stop="29393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38194" g_stop="37880" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37625" g_stop="37522" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="419" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="463" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30005" g_stop="29693" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="776" r_length="313" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E729789" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38194" e_stop="37880"/>
          <exon e_start="37625" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
          <exon e_start="30005" e_stop="29693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTCTTTTGCTCTTTTCTAATCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAGGTTTGTTGCAATTTATTAGTCTTTTAGCTAGTATTCGAAATTGGGTTTTGTTAGTATTGCTTAAATTTATGTTCTTTTTTTGTTGATTATGTTTGTTTGGTTCTCTTTTCTGATTCAGGGTTTATCTAATCTTTGTGTCTTACGGTTGTTTTTGATCGGAAGTATTAATTGGTCCACTAAAAGAATGTTTTATTTTCCAGTTAGTGCTTGTTTACTCTCCAAATTTCAGTCATTTATCTTCCATTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGGGTATATTTACTACTTCTCTAAGTTGTACTTGCATATCTTGACAGTTTAAATTGCTTCCTTCTGGTTGCCACTTCATTTGTCTCTCCTTATCTGAAACTTTATGTACGCGTGGTGGCTTGTCAGCAGGTGAGATTAGTTTTTTTCTTTAAAAATATCTTGATTAAGTTGGGCAAGGTTACATTCTTGTCTTGTAAAGAGGTTGGCTGGTAGGATTATGGTTTTCTTTTATTGTATGATTAAATTCAGCTGCTAATCTCGATGGTGTTGTCAAAGGAAATAGAGAAGTCAATAGAAGTTGCTGTTTTGCTTCAGATTATGCTAATTCATCCTGTGATAAACATGTCTAGTTCTCCTCCTTGTTCTGAATTTTGATAGCAGAAACAAAAGAAAGAGTGATGGTGGGAGTGATGTGTTCTTTTTTGTTTGGATTAGTACTGGCGTACTGGGGATATAAATAAAAAAGAAAAGAAAAGAAAGAAAGAAAGGATGGGCTACATAGTGAACAAAAGTTCAACCCCTCTTACCAACCAAAAGTAGGCTTACATAGAGAAATTCATTTTTAGTATATCTTATATTTAAGCTACACAGGTCTCCCGTAGACTTGAAAAAACGAGTTACTCTTTTTTCACTTTCTTCTTCTGGTACTTCCAATTATTAATTTATTATTTGCTCAAAAATTTTGAAGGTTCTTATTTGTTGTAATTTTTTGCTATGTTTATGGTCAAAAGAAATGATTTCCATAGCCATTCCAATAATACTTCTTTTGATAAGTATATAATTAAACTTTTTTCGAGTCATATCGTTTGGTGTTGGGGATGGGATATATATCTATATATGTATGAGAAAACTTATCCCATCGTTGCTGTATAAATGGTAGGATAAATAATTCCAAAGACTAATTAATATCCCTAACAAAAAGAATGATAAAATAGCCTTGTTGTTTATCCTGGGATTATTATCATCTATCCCTCATACCAAGTGACCCGTAAGAGATTACAATGACAACATACCCAGTGTAATTCCACAAGTGGGTCTGGGAGGGCAAATGTACGCATACCTTCTCTCTATCTTTTAGTAGAGAGGTTGTTTCCAATAGACTCTCGACTCAAAAGTAGTGTCATTAAAGCATGATATAAAAGAAAATAACCACTGCAAAATAGCAAGATAAATGAAACACATGAAGTAATATGTAGTAGAAAAAATGGAGAATAAGAACTATGCAAATACTAGATGTGATTACTAATTAAGGAGAGGATGAGTCGAGGAGATTAACCCTCGAGATTAACCCTCCAACCAAACTCTCACATTTCCTCTTCACCTGTCTGAACCACCTCTGTCTCACTTCTCTAATCTTATCCTTCACGGAGGCCACTTTCGCCTTGTCCTGTGTATATTCATTCCTAATCTCATCTCTCCTAGTATGCCTGCATATCCATTTGGGCATCCTCATTTATGCTATCTTCATCTTCTGTATGTGTGCATTCTTGACTGGCCAACCCTTTACCTCGCACTACAGTCTAGGTTTAACTATCACTCAGTAGAACTTACCTTTTTAAGTCTTGGTGAAACATTTTGTCACACAGTACTCTGGATACAAGTGCCCATTTCATTGTTAATCTTCCCATTTCCTTGGATTATAGACCCAATATACTTGAAACTCTCCCTTGGGTATGACTTGTCTATCAATCTTCACTTCCATCCCCTCCTCCACTATAGGCATTGTGTGATTGAACTTGCAGTCCAGGTCCATTGGCGTAGCCACATGGTTGTATACCCTTCGTTGGAAAAAAAAATATCGTACATAGTACATACAAGTAAGTATATACAAGAAAATGATACATGAAATGATTAAATAACATTTTTTGGACACCCTTGAGATAACATGCTGTTAATGCCCAGTATTTTCACCTCCTTTGAATGGGGAAGTGTTCGTGTGTTCGAATCTCACTAGTTCTACTTTTTGAAACGAGCTTTTGTTGTGCTATTTCTGGACACCCTTCTGGTTCCGCCACTGCCAGTTACTCTATTTTAATCCTACGTTTGCTTAACCTGAAACCTTTAGATTCTAGGGTCTGTTTGCCAAACTACTCTATCATTAACTCCACCACGCGTCTCATAGATATCAATACAGATCGATACTATGTCATTTGCGAATAACATACATCAAGATGCCACCCCTTAAATACGCCACGTCAATTCGTCCATCACTTTGGTTAAAAGAATTGCGATGTATGATTGAAGTGCCCAACAAAATAATGTACACCACATGCTAGCCTGGACTTCGGATTTAGAGGTTGTGATAGGTGGAGTTTTCTAAGTTAAGTCATACACTCACTATATATTTGTGAGGGAGGACTCTGACTTTCCACACTTATCAACCTGAAATCCTAGGAAGGAAAGATGTGTTTCTCTTCTTGCCTAGAAACAAGAGAGGTAATGTTTGACATCTGAAGATCCAAGGCAGAAAAGATTGTCTGTCAATTTGTGTTTGTCAAGAAGATGTGGACCATCTCCTATTGCAGTGTGCTGCTGCTACTAGTTGTAGTTAATGGTTGTGAACTGGTCCAAAATGCCATGGACAACGTTGGGCACATCAATGAATTTGTTGTGCAACTAGACTTTCAGAAGAAGGATGGGAAGACATAGGCATGGTGCACCTTTAGCCCTAGTGTGAGTTCTTTAGAAGGAGAGCAATCAGAGAGCGCTTATAGACTGATTTGACTATCCAACTCTAAGAGATTGACTATCCAAAAAGATAAAAAATAAACCTAAGATGTTGCTGCGAGCCTGCAACTATACAACTATTTTACGAAGATTAATTCGTATTTCTAGCTTGTAAGTATCTGACGGAATTTTAGAGTGTCCTTATCATTTATTTTATTTCATATACACTAGACACAGAGGCGAATCGATGATTTCGAGTCTCTTGGTGCCAAGTAGGTTAATCAGTTAAATTAATTTTAGGCTTCAATCGAATTATTCATCTTTCCGGTCTATGAAATATGAACAATAATGAGATGACAATTTTTGTATTATATATACTACAAATTCTTTAAGCATGGGTCATGCTAATCTTCTCCGCATTATTTCAATTTTATTAGATGTCTCCAACAAAGCAAAAGTTTATCATTTTAATTTTAGATGCTCTTGTTGAAAGTCGAATTCAAGATCGACAACGGAAGATTTTTTTTCTCACTTATATTTGGGAAAAATCACTTTAGCTCAATTGTTTGACTATTTGAACTCTCACCTTACCATTTTCCCTTCCCTTCCCTACCTCCATATAAAAATACAAATTTTCACCCCACATTTGATTGAGATCATAAAGTAAAGAAAGTTAAAACTTTCAATTATACTATAAATATCATAAATATTCATCCTTCATTTATAATTGTACTCGACAAGTTTTTACATTTTGAAAACGATCAATGACAATATCAATGCGTATATTTATAAATGGATCACGTTTTATGTAACACGCTAGTCCAATATACTTATAAATTACTACTCCATATTAAAACAACTATTAGAAACAAACAAAAAAAATAATGTGTCGCTATCATATTAAGGAAGCAAGTTAAAATTGCAAAGGGCCGTCAGCGAGCAAGTTAAAGTTGCAAATTAAAAAACTCCTAGGGCCTCAGCGAGATTCGACCTCGCGATCTCCGTATTAGAATATGACCCTTAGCCAGCCACGCCACAAGGACTTTTGGTTCCCTGGGTGGCACGTTTAATATTTGTAATTATATTGTCGATATATACCTATATATATTAGAGTTTCCGTCGAAGCCCGTGGGAGGTGTATCACCCCCACGAACCTTAGTAGATCCACCCCTGACTAGACAGCTACCATAAGGGCACAACTATATTGAATTCTTAAAATGCATTGTACCTTGCACTCCATTTTACTGCTTGCTGCTTGGATCTTGTCATGTGACTGGCTCACAAAAAGAAGAGAAAGAATGCAACTATAGGATCTCAGAGAGAAACACCTGAGACCAACATAAAATGTGTCTCACTTTTGGGATCTCATCGTCTCCTATTCTTAATGATAAAACAAATTCTCTTCAACTTTATATGGATTCATAGAGGCCCTTGCTAATAGTGTTTGTCAACCCTTGTTTATTTTAGATCCTTACTTAAAGGCCAAGTTATTGCCTTTTTGTTTTATTTGTAACTTCTTACCGAGCTATAACTCCAACACAAATCTACTTTTACGTATGGGGATGTAGGTCAATAACACTTTGTTAGTGTTACCCTAATTTATTTTAGATCTGTACTTAAAGGCCAACTTATTGCCTACTTGTTTTATTTGTTCGAGATTTTACAGTATGTACATAATGCACATACATAAATGAACTATAAGACAATATGTATTATTGTACTTGTACACATCATATGTGTAGTGATTGTTATGTGTACTTGCAATAAAATTGTGCCCAAGTATTTCTTGTCTTGATGTGACTTCATTTTTATGCAAGCTTTTTCTAATATCTAGTAATTCTTGTAGAAATGGCAATTGAGGTTTTGTACTCCTAAAGTTGACACAAAATAGAAAACAAAAAACCGCAAGAACTTCCATTAGTCTTATCTCTTTTTTTGTGTGTAGCATACCTCTAAGAAAGAAACTCATCTATTCCAATTCAAATATGATGATTCACCATTGTTGGTCGATGGAGTTTGGCCTTGTCATGTAGGTGAATTACCTGATTTACACGTCAACACCATATCAGTTCAATTTGGGTCAAAGACATTTAGGAATTATAACAACATAAAGCAAAATGGCGAGTTGATCATCCATATGGAAGATGTACTCAGAAGTATCATTAAGAAAGGTGCTTTGAGATATGCTTTCTTGGTGTAATGTAAAATAGAGATTTATGATATGATGGAGGCCTCTGTTCCTTTTACCAATGATGCTGAGCTGAAATCAAATACTTTTTGCAGTTCTGTGAAGAAGTGTTTACCAATTATTTGATCTGAAAGGGGGGACCAAGCAGTTTTGTATACTGCTACAAATGGTTAGGGTTAGTGCTGAGCCTTGAAAAGTTTGGTGCCACTGTATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATTTCCACATATTTTGACATATTATTTGGGTCAAAATTTGGGTGAAATTTCAACATGTGTTTGACCATTGTTTTTGGGAAACATATTTAACTTTTTTAGGAGATATGATTTATACCCATATCAAAACTAACCATAGGTTTGTAGTACAAATAAATTGGATCTTTGTTCCAACAAATAACAAGTAGTGTCCAGGACATTAGAGCAATATGGTAGTTCAGAGTGAGTTAGTTCAACAAGTATCATTCCATACATTGTGAAGTAGACAGAGCACATGACATTATTACCCTTAGCCGATTGTTCATCATTTCATCAATAGTCATATCATTACTTTCATATTCACGGAATATTCTATCACTGCTTGGGTGTTTACGGAAAAATTATGTAAATATAGCGCAACAACTACTGTAGAGGGTGTTTTTGTAAACGATAAAGTTTGGTATAGAATTTAAATTTTTAAAAGATTCCAAATAATGAGATTTGACCCAATACTAGTTTTTTCTAGTATTTGGGAATTTGGGTTATTTGCCAAATAATGACAAATTGTATGGACAAACACTATTTGCCAAATTTGCCCCCAAATTTTACATGGGAAATCTATGGCCAAATGGGTCAGAAGAGTGCTCTCTGAGATGGGAACTAGAGCAGTAACTAAGCCTGGGGCATGGGTGTTGCTTTGGTACTTCCGTCAGTGAATGTTCTCTTTGTATGGGAGAATATGCTAAGCGGAAAAATAGAAATGTCCGAATGGGGCATGCAAACACACTAGAACAAGTATGCTGCTAGGAGGAACAAAAGAAGCATATGAATCAGAACTTTACCTTTGAATCAGGGCAGTTATTGTAGAAACACAATTATGTGATAGTTGTGGAGAACTAAAATTCATTGTTTGAAAAACAATGGGCTCAGGGCTGAACCAAAGGTTTGTGTTTATAAGTCTATTGACTGAAGTTAGAATTCCATTAGTGTATGACAGAGTTAACAAAATAAGCATAGGAATCAGAACTTTACCTTTGAATCACGGCAGTTAATGTAGAAACACAATTATGTGATAGTTGTGGAGAACAAAAATTTATTATTTGGAAACAATGAGCTGAACCAAAGGTATGTCTATTAACTGAAGTTAGAATTCCATGAGTGTATGACAGAGGAAAAGTTACCCTGTGAGTGTCGTGATCTATGTTCATACAATAACTGGTTAAGCAATCTTAATTTTTACCATCAGAGGTCCCTCTGAAGATTGTCATCGATGTCTTTACTCTTGTCGAGCGGAGTTGTTCAGAAGGAAGGCTTACATCTTATATAGGGAATTTGGCTCCCTTTCATACTTCAACTCTTTGGAACTTTGATATTTTCTTTCTGCTTTATCGGATTTTGAGGTTCTAATTACATTGAATTATTTGGGCCACCAGAAGCTAGTAGAGAGCTCATATAGTTCTGATGGCAGTCATAACAATTATTATCTTTGGATGTAAATGAGTTACCTTTGCTTCTTTGATGGGGTCTTCCTAATTAATGGGGATGATTATGTTCATGTTCAAAAGAATTTTCTGTGATTGTGCTTGTTTAATCATTAAACTTTAGCGTCAACCACTTGCTACTGCACTGCCCTGTTGCTTCAGACCTCTGGAATATGTTATGTTGTTTTTTTGGTCTATCCTGGGTCAGGGATGCCTTAGAAAGTTGGAGTTCACGGTAAGTTGACAACGCAATCAAGTGTATGTCGATGATGATCCCTGGTACTCTCTTTTGGTATTTATGGAAAGTGGAACAGAAGATGTTTTGATGGAATTTCCACTTCTAGAAATCTTTTGCGAGGCAGATGTCTAGTTAGCCTTTTTAGCTGTCCAAATTGACCCATGTAAATAATTTAGACCTATTCTTGGATTTTGTTAGCTCTATAGTTTAAAAAGAGGCTACAAATCCTTTTTTGTGAGCTTAACTGCTCTCTCCTTGTAATGCTAGCATCTTGTTGATGCCTTAAAAAGAATCTATCTTACTTCACAAAAAAGAAAGCATTAAACTTGCATCATTGAATAGATCTCTGTTGGCTGGTTGGATATACACCTTTATTCAATTTTTTAATCGTCGATCACGGTGTGAACTATATTAATTACTGCCCAACTGCTCGCGTGCTGATTGTACTTTATCCAGCTTGCTTATTACTTGATCTCACCAGTTGTTTGATTGAATGTACATCTTTAGGCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCT</genome_strand>
        <mrna_strand>CCTGTCTTTTGCTCTTTTCTAATCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG..............................................................................................................................................................................................................................................................AGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT.......................................................................................................................................GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200046" ref_strand="+" ref_description="SGN-E200046 [cLEC-8-G10]">
      <seq>tggtgcagagaggaaaggaaggacttttgtggttagatctgatgggggtttgagctatggtttgaatggacgtggaggaagagctgaacaattaattactaatgctgttgctactaaagaagatactgctgcagcttctacttcatcaaagccagggcatgaactattgctctttgaggccctccgtgaaggtcttgaagaagaaatggacagggatcccgctgtttgtgtaatgggtgaagatgtcggtcattatggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgacactcccattgctgagaactctttcactggtatgggcattggagctgcaatgaccggtttgcgtccagttattgagggaatgaacatgggatttcttcttctagcctttaatcaaatatctaacaactgcggtatgctccactacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="37930" stop="29396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37635" g_stop="37522" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="156" r_length="44" r_score="0.886"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337">
            <donor d_prob="1.000" d_score="0.89"/>
            <acceptor a_prob="0.985" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30005" g_stop="29696" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="466" r_length="310" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E200046" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37635" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
          <exon e_start="30005" e_stop="29696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGGGTATATTTACTACTTCTCTAAGTTGTACTTGCATATCTTGACAGTTTAAATTGCTTCCTTCTGGTTGCCACTTCATTTGTCTCTCCTTATCTGAAACTTTATGTACGCGTGGTGGCTTGTCAGCAGGTGAGATTAGTTTTTTTCTTTAAAAATATCTTGATTAAGTTGGGCAAGGTTACATTCTTGTCTTGTAAAGAGGTTGGCTGGTAGGATTATGGTTTTCTTTTATTGTATGATTAAATTCAGCTGCTAATCTCGATGGTGTTGTCAAAGGAAATAGAGAAGTCAATAGAAGTTGCTGTTTTGCTTCAGATTATGCTAATTCATCCTGTGATAAACATGTCTAGTTCTCCTCCTTGTTCTGAATTTTGATAGCAGAAACAAAAGAAAGAGTGATGGTGGGAGTGATGTGTTCTTTTTTGTTTGGATTAGTACTGGCGTACTGGGGATATAAATAAAAAAGAAAAGAAAAGAAAGAAAGAAAGGATGGGCTACATAGTGAACAAAAGTTCAACCCCTCTTACCAACCAAAAGTAGGCTTACATAGAGAAATTCATTTTTAGTATATCTTATATTTAAGCTACACAGGTCTCCCGTAGACTTGAAAAAACGAGTTACTCTTTTTTCACTTTCTTCTTCTGGTACTTCCAATTATTAATTTATTATTTGCTCAAAAATTTTGAAGGTTCTTATTTGTTGTAATTTTTTGCTATGTTTATGGTCAAAAGAAATGATTTCCATAGCCATTCCAATAATACTTCTTTTGATAAGTATATAATTAAACTTTTTTCGAGTCATATCGTTTGGTGTTGGGGATGGGATATATATCTATATATGTATGAGAAAACTTATCCCATCGTTGCTGTATAAATGGTAGGATAAATAATTCCAAAGACTAATTAATATCCCTAACAAAAAGAATGATAAAATAGCCTTGTTGTTTATCCTGGGATTATTATCATCTATCCCTCATACCAAGTGACCCGTAAGAGATTACAATGACAACATACCCAGTGTAATTCCACAAGTGGGTCTGGGAGGGCAAATGTACGCATACCTTCTCTCTATCTTTTAGTAGAGAGGTTGTTTCCAATAGACTCTCGACTCAAAAGTAGTGTCATTAAAGCATGATATAAAAGAAAATAACCACTGCAAAATAGCAAGATAAATGAAACACATGAAGTAATATGTAGTAGAAAAAATGGAGAATAAGAACTATGCAAATACTAGATGTGATTACTAATTAAGGAGAGGATGAGTCGAGGAGATTAACCCTCGAGATTAACCCTCCAACCAAACTCTCACATTTCCTCTTCACCTGTCTGAACCACCTCTGTCTCACTTCTCTAATCTTATCCTTCACGGAGGCCACTTTCGCCTTGTCCTGTGTATATTCATTCCTAATCTCATCTCTCCTAGTATGCCTGCATATCCATTTGGGCATCCTCATTTATGCTATCTTCATCTTCTGTATGTGTGCATTCTTGACTGGCCAACCCTTTACCTCGCACTACAGTCTAGGTTTAACTATCACTCAGTAGAACTTACCTTTTTAAGTCTTGGTGAAACATTTTGTCACACAGTACTCTGGATACAAGTGCCCATTTCATTGTTAATCTTCCCATTTCCTTGGATTATAGACCCAATATACTTGAAACTCTCCCTTGGGTATGACTTGTCTATCAATCTTCACTTCCATCCCCTCCTCCACTATAGGCATTGTGTGATTGAACTTGCAGTCCAGGTCCATTGGCGTAGCCACATGGTTGTATACCCTTCGTTGGAAAAAAAAATATCGTACATAGTACATACAAGTAAGTATATACAAGAAAATGATACATGAAATGATTAAATAACATTTTTTGGACACCCTTGAGATAACATGCTGTTAATGCCCAGTATTTTCACCTCCTTTGAATGGGGAAGTGTTCGTGTGTTCGAATCTCACTAGTTCTACTTTTTGAAACGAGCTTTTGTTGTGCTATTTCTGGACACCCTTCTGGTTCCGCCACTGCCAGTTACTCTATTTTAATCCTACGTTTGCTTAACCTGAAACCTTTAGATTCTAGGGTCTGTTTGCCAAACTACTCTATCATTAACTCCACCACGCGTCTCATAGATATCAATACAGATCGATACTATGTCATTTGCGAATAACATACATCAAGATGCCACCCCTTAAATACGCCACGTCAATTCGTCCATCACTTTGGTTAAAAGAATTGCGATGTATGATTGAAGTGCCCAACAAAATAATGTACACCACATGCTAGCCTGGACTTCGGATTTAGAGGTTGTGATAGGTGGAGTTTTCTAAGTTAAGTCATACACTCACTATATATTTGTGAGGGAGGACTCTGACTTTCCACACTTATCAACCTGAAATCCTAGGAAGGAAAGATGTGTTTCTCTTCTTGCCTAGAAACAAGAGAGGTAATGTTTGACATCTGAAGATCCAAGGCAGAAAAGATTGTCTGTCAATTTGTGTTTGTCAAGAAGATGTGGACCATCTCCTATTGCAGTGTGCTGCTGCTACTAGTTGTAGTTAATGGTTGTGAACTGGTCCAAAATGCCATGGACAACGTTGGGCACATCAATGAATTTGTTGTGCAACTAGACTTTCAGAAGAAGGATGGGAAGACATAGGCATGGTGCACCTTTAGCCCTAGTGTGAGTTCTTTAGAAGGAGAGCAATCAGAGAGCGCTTATAGACTGATTTGACTATCCAACTCTAAGAGATTGACTATCCAAAAAGATAAAAAATAAACCTAAGATGTTGCTGCGAGCCTGCAACTATACAACTATTTTACGAAGATTAATTCGTATTTCTAGCTTGTAAGTATCTGACGGAATTTTAGAGTGTCCTTATCATTTATTTTATTTCATATACACTAGACACAGAGGCGAATCGATGATTTCGAGTCTCTTGGTGCCAAGTAGGTTAATCAGTTAAATTAATTTTAGGCTTCAATCGAATTATTCATCTTTCCGGTCTATGAAATATGAACAATAATGAGATGACAATTTTTGTATTATATATACTACAAATTCTTTAAGCATGGGTCATGCTAATCTTCTCCGCATTATTTCAATTTTATTAGATGTCTCCAACAAAGCAAAAGTTTATCATTTTAATTTTAGATGCTCTTGTTGAAAGTCGAATTCAAGATCGACAACGGAAGATTTTTTTTCTCACTTATATTTGGGAAAAATCACTTTAGCTCAATTGTTTGACTATTTGAACTCTCACCTTACCATTTTCCCTTCCCTTCCCTACCTCCATATAAAAATACAAATTTTCACCCCACATTTGATTGAGATCATAAAGTAAAGAAAGTTAAAACTTTCAATTATACTATAAATATCATAAATATTCATCCTTCATTTATAATTGTACTCGACAAGTTTTTACATTTTGAAAACGATCAATGACAATATCAATGCGTATATTTATAAATGGATCACGTTTTATGTAACACGCTAGTCCAATATACTTATAAATTACTACTCCATATTAAAACAACTATTAGAAACAAACAAAAAAAATAATGTGTCGCTATCATATTAAGGAAGCAAGTTAAAATTGCAAAGGGCCGTCAGCGAGCAAGTTAAAGTTGCAAATTAAAAAACTCCTAGGGCCTCAGCGAGATTCGACCTCGCGATCTCCGTATTAGAATATGACCCTTAGCCAGCCACGCCACAAGGACTTTTGGTTCCCTGGGTGGCACGTTTAATATTTGTAATTATATTGTCGATATATACCTATATATATTAGAGTTTCCGTCGAAGCCCGTGGGAGGTGTATCACCCCCACGAACCTTAGTAGATCCACCCCTGACTAGACAGCTACCATAAGGGCACAACTATATTGAATTCTTAAAATGCATTGTACCTTGCACTCCATTTTACTGCTTGCTGCTTGGATCTTGTCATGTGACTGGCTCACAAAAAGAAGAGAAAGAATGCAACTATAGGATCTCAGAGAGAAACACCTGAGACCAACATAAAATGTGTCTCACTTTTGGGATCTCATCGTCTCCTATTCTTAATGATAAAACAAATTCTCTTCAACTTTATATGGATTCATAGAGGCCCTTGCTAATAGTGTTTGTCAACCCTTGTTTATTTTAGATCCTTACTTAAAGGCCAAGTTATTGCCTTTTTGTTTTATTTGTAACTTCTTACCGAGCTATAACTCCAACACAAATCTACTTTTACGTATGGGGATGTAGGTCAATAACACTTTGTTAGTGTTACCCTAATTTATTTTAGATCTGTACTTAAAGGCCAACTTATTGCCTACTTGTTTTATTTGTTCGAGATTTTACAGTATGTACATAATGCACATACATAAATGAACTATAAGACAATATGTATTATTGTACTTGTACACATCATATGTGTAGTGATTGTTATGTGTACTTGCAATAAAATTGTGCCCAAGTATTTCTTGTCTTGATGTGACTTCATTTTTATGCAAGCTTTTTCTAATATCTAGTAATTCTTGTAGAAATGGCAATTGAGGTTTTGTACTCCTAAAGTTGACACAAAATAGAAAACAAAAAACCGCAAGAACTTCCATTAGTCTTATCTCTTTTTTTGTGTGTAGCATACCTCTAAGAAAGAAACTCATCTATTCCAATTCAAATATGATGATTCACCATTGTTGGTCGATGGAGTTTGGCCTTGTCATGTAGGTGAATTACCTGATTTACACGTCAACACCATATCAGTTCAATTTGGGTCAAAGACATTTAGGAATTATAACAACATAAAGCAAAATGGCGAGTTGATCATCCATATGGAAGATGTACTCAGAAGTATCATTAAGAAAGGTGCTTTGAGATATGCTTTCTTGGTGTAATGTAAAATAGAGATTTATGATATGATGGAGGCCTCTGTTCCTTTTACCAATGATGCTGAGCTGAAATCAAATACTTTTTGCAGTTCTGTGAAGAAGTGTTTACCAATTATTTGATCTGAAAGGGGGGACCAAGCAGTTTTGTATACTGCTACAAATGGTTAGGGTTAGTGCTGAGCCTTGAAAAGTTTGGTGCCACTGTATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATTTCCACATATTTTGACATATTATTTGGGTCAAAATTTGGGTGAAATTTCAACATGTGTTTGACCATTGTTTTTGGGAAACATATTTAACTTTTTTAGGAGATATGATTTATACCCATATCAAAACTAACCATAGGTTTGTAGTACAAATAAATTGGATCTTTGTTCCAACAAATAACAAGTAGTGTCCAGGACATTAGAGCAATATGGTAGTTCAGAGTGAGTTAGTTCAACAAGTATCATTCCATACATTGTGAAGTAGACAGAGCACATGACATTATTACCCTTAGCCGATTGTTCATCATTTCATCAATAGTCATATCATTACTTTCATATTCACGGAATATTCTATCACTGCTTGGGTGTTTACGGAAAAATTATGTAAATATAGCGCAACAACTACTGTAGAGGGTGTTTTTGTAAACGATAAAGTTTGGTATAGAATTTAAATTTTTAAAAGATTCCAAATAATGAGATTTGACCCAATACTAGTTTTTTCTAGTATTTGGGAATTTGGGTTATTTGCCAAATAATGACAAATTGTATGGACAAACACTATTTGCCAAATTTGCCCCCAAATTTTACATGGGAAATCTATGGCCAAATGGGTCAGAAGAGTGCTCTCTGAGATGGGAACTAGAGCAGTAACTAAGCCTGGGGCATGGGTGTTGCTTTGGTACTTCCGTCAGTGAATGTTCTCTTTGTATGGGAGAATATGCTAAGCGGAAAAATAGAAATGTCCGAATGGGGCATGCAAACACACTAGAACAAGTATGCTGCTAGGAGGAACAAAAGAAGCATATGAATCAGAACTTTACCTTTGAATCAGGGCAGTTATTGTAGAAACACAATTATGTGATAGTTGTGGAGAACTAAAATTCATTGTTTGAAAAACAATGGGCTCAGGGCTGAACCAAAGGTTTGTGTTTATAAGTCTATTGACTGAAGTTAGAATTCCATTAGTGTATGACAGAGTTAACAAAATAAGCATAGGAATCAGAACTTTACCTTTGAATCACGGCAGTTAATGTAGAAACACAATTATGTGATAGTTGTGGAGAACAAAAATTTATTATTTGGAAACAATGAGCTGAACCAAAGGTATGTCTATTAACTGAAGTTAGAATTCCATGAGTGTATGACAGAGGAAAAGTTACCCTGTGAGTGTCGTGATCTATGTTCATACAATAACTGGTTAAGCAATCTTAATTTTTACCATCAGAGGTCCCTCTGAAGATTGTCATCGATGTCTTTACTCTTGTCGAGCGGAGTTGTTCAGAAGGAAGGCTTACATCTTATATAGGGAATTTGGCTCCCTTTCATACTTCAACTCTTTGGAACTTTGATATTTTCTTTCTGCTTTATCGGATTTTGAGGTTCTAATTACATTGAATTATTTGGGCCACCAGAAGCTAGTAGAGAGCTCATATAGTTCTGATGGCAGTCATAACAATTATTATCTTTGGATGTAAATGAGTTACCTTTGCTTCTTTGATGGGGTCTTCCTAATTAATGGGGATGATTATGTTCATGTTCAAAAGAATTTTCTGTGATTGTGCTTGTTTAATCATTAAACTTTAGCGTCAACCACTTGCTACTGCACTGCCCTGTTGCTTCAGACCTCTGGAATATGTTATGTTGTTTTTTTGGTCTATCCTGGGTCAGGGATGCCTTAGAAAGTTGGAGTTCACGGTAAGTTGACAACGCAATCAAGTGTATGTCGATGATGATCCCTGGTACTCTCTTTTGGTATTTATGGAAAGTGGAACAGAAGATGTTTTGATGGAATTTCCACTTCTAGAAATCTTTTGCGAGGCAGATGTCTAGTTAGCCTTTTTAGCTGTCCAAATTGACCCATGTAAATAATTTAGACCTATTCTTGGATTTTGTTAGCTCTATAGTTTAAAAAGAGGCTACAAATCCTTTTTTGTGAGCTTAACTGCTCTCTCCTTGTAATGCTAGCATCTTGTTGATGCCTTAAAAAGAATCTATCTTACTTCACAAAAAAGAAAGCATTAAACTTGCATCATTGAATAGATCTCTGTTGGCTGGTTGGATATACACCTTTATTCAATTTTTTAATCGTCGATCACGGTGTGAACTATATTAATTACTGCCCAACTGCTCGCGTGCTGATTGTACTTTATCCAGCTTGCTTATTACTTGATCTCACCAGTTGTTTGATTGAATGTACATCTTTAGGCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACA</genome_strand>
        <mrna_strand>TGGT--GCAGAGAGGAAAGGAAGGACTTTTGTGGTTAGATCTGATGGGGGTTTGAGCTATGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATTACTAATGCTGTTGCT.......................................................................................................................................ACTAAAGAAGATACTGCTGCAGCTTCTACTTCATCAAAGCCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAACTATTGCTCTTTGAGGCCCTCCGTGAAGGTCTTGAAGAAGAAATGGACAGGGATCCCGCTGTTTGTGTAATGGGTGAAGATGTCGGTCATTATGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGACACTCCCATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACCGGTTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTAGCCTTTAATCAAATATCTAACAACTGCGGTATGCTCCACTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346122" ref_strand="+" ref_description="SGN-E346122 [cTOF-34-K1]">
      <seq>atctccctcattattatactgcattttctcttcatttatttgaatcaagaatccatttttcttcgtggggttttctagatggctgctattatacaaggaattggtgctgctactgcactaacctcagccagttctttggacaccaagaagacatttttctccaattctcgcagatctttgtcagttggtgcagagaggaaaggaaggacttttgtggttagatctgatgggggtttgagctatggtttgaatggacgtggaggaagagctgaacaattaattactaatgctgttgctactaaagaagatactgctgcagcttctacttcatcaaagccagggcatgaactattgctctttgaggccctccgtgaaggtcttgaagaagaaatggacagggatcccgctgtttgtgtaatgggtgaagatgtcggtcattatggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgacactcccattgctgagaactctttcactggtatgggcattggagctgcaatgaccggtttgcgtccagttattgaaggaatgaacatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="38357" stop="29453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38065" g_stop="37880" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.876"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37879" i_stop="37637" i_length="243">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37636" g_stop="37522" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="297" r_length="113" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="341" r_length="44" r_score="0.886"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337">
            <donor d_prob="1.000" d_score="0.89"/>
            <acceptor a_prob="0.985" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30005" g_stop="29753" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="594" r_length="253" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E346122" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38065" e_stop="37880"/>
          <exon e_start="37636" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
          <exon e_start="30005" e_stop="29753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAGGTTTGTTGCAATTTATTAGTCTTTTAGCTAGTATTCGAAATTGGGTTTTGTTAGTATTGCTTAAATTTATGTTCTTTTTTTGTTGATTATGTTTGTTTGGTTCTCTTTTCTGATTCAGGGTTTATCTAATCTTTGTGTCTTACGGTTGTTTTTGATCGGAAGTATTAATTGGTCCACTAAAAGAATGTTTTATTTTCCAGTTAGTGCTTGTTTACTCTCCAAATTTCAGTCATTTATCTTCCATTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGGGTATATTTACTACTTCTCTAAGTTGTACTTGCATATCTTGACAGTTTAAATTGCTTCCTTCTGGTTGCCACTTCATTTGTCTCTCCTTATCTGAAACTTTATGTACGCGTGGTGGCTTGTCAGCAGGTGAGATTAGTTTTTTTCTTTAAAAATATCTTGATTAAGTTGGGCAAGGTTACATTCTTGTCTTGTAAAGAGGTTGGCTGGTAGGATTATGGTTTTCTTTTATTGTATGATTAAATTCAGCTGCTAATCTCGATGGTGTTGTCAAAGGAAATAGAGAAGTCAATAGAAGTTGCTGTTTTGCTTCAGATTATGCTAATTCATCCTGTGATAAACATGTCTAGTTCTCCTCCTTGTTCTGAATTTTGATAGCAGAAACAAAAGAAAGAGTGATGGTGGGAGTGATGTGTTCTTTTTTGTTTGGATTAGTACTGGCGTACTGGGGATATAAATAAAAAAGAAAAGAAAAGAAAGAAAGAAAGGATGGGCTACATAGTGAACAAAAGTTCAACCCCTCTTACCAACCAAAAGTAGGCTTACATAGAGAAATTCATTTTTAGTATATCTTATATTTAAGCTACACAGGTCTCCCGTAGACTTGAAAAAACGAGTTACTCTTTTTTCACTTTCTTCTTCTGGTACTTCCAATTATTAATTTATTATTTGCTCAAAAATTTTGAAGGTTCTTATTTGTTGTAATTTTTTGCTATGTTTATGGTCAAAAGAAATGATTTCCATAGCCATTCCAATAATACTTCTTTTGATAAGTATATAATTAAACTTTTTTCGAGTCATATCGTTTGGTGTTGGGGATGGGATATATATCTATATATGTATGAGAAAACTTATCCCATCGTTGCTGTATAAATGGTAGGATAAATAATTCCAAAGACTAATTAATATCCCTAACAAAAAGAATGATAAAATAGCCTTGTTGTTTATCCTGGGATTATTATCATCTATCCCTCATACCAAGTGACCCGTAAGAGATTACAATGACAACATACCCAGTGTAATTCCACAAGTGGGTCTGGGAGGGCAAATGTACGCATACCTTCTCTCTATCTTTTAGTAGAGAGGTTGTTTCCAATAGACTCTCGACTCAAAAGTAGTGTCATTAAAGCATGATATAAAAGAAAATAACCACTGCAAAATAGCAAGATAAATGAAACACATGAAGTAATATGTAGTAGAAAAAATGGAGAATAAGAACTATGCAAATACTAGATGTGATTACTAATTAAGGAGAGGATGAGTCGAGGAGATTAACCCTCGAGATTAACCCTCCAACCAAACTCTCACATTTCCTCTTCACCTGTCTGAACCACCTCTGTCTCACTTCTCTAATCTTATCCTTCACGGAGGCCACTTTCGCCTTGTCCTGTGTATATTCATTCCTAATCTCATCTCTCCTAGTATGCCTGCATATCCATTTGGGCATCCTCATTTATGCTATCTTCATCTTCTGTATGTGTGCATTCTTGACTGGCCAACCCTTTACCTCGCACTACAGTCTAGGTTTAACTATCACTCAGTAGAACTTACCTTTTTAAGTCTTGGTGAAACATTTTGTCACACAGTACTCTGGATACAAGTGCCCATTTCATTGTTAATCTTCCCATTTCCTTGGATTATAGACCCAATATACTTGAAACTCTCCCTTGGGTATGACTTGTCTATCAATCTTCACTTCCATCCCCTCCTCCACTATAGGCATTGTGTGATTGAACTTGCAGTCCAGGTCCATTGGCGTAGCCACATGGTTGTATACCCTTCGTTGGAAAAAAAAATATCGTACATAGTACATACAAGTAAGTATATACAAGAAAATGATACATGAAATGATTAAATAACATTTTTTGGACACCCTTGAGATAACATGCTGTTAATGCCCAGTATTTTCACCTCCTTTGAATGGGGAAGTGTTCGTGTGTTCGAATCTCACTAGTTCTACTTTTTGAAACGAGCTTTTGTTGTGCTATTTCTGGACACCCTTCTGGTTCCGCCACTGCCAGTTACTCTATTTTAATCCTACGTTTGCTTAACCTGAAACCTTTAGATTCTAGGGTCTGTTTGCCAAACTACTCTATCATTAACTCCACCACGCGTCTCATAGATATCAATACAGATCGATACTATGTCATTTGCGAATAACATACATCAAGATGCCACCCCTTAAATACGCCACGTCAATTCGTCCATCACTTTGGTTAAAAGAATTGCGATGTATGATTGAAGTGCCCAACAAAATAATGTACACCACATGCTAGCCTGGACTTCGGATTTAGAGGTTGTGATAGGTGGAGTTTTCTAAGTTAAGTCATACACTCACTATATATTTGTGAGGGAGGACTCTGACTTTCCACACTTATCAACCTGAAATCCTAGGAAGGAAAGATGTGTTTCTCTTCTTGCCTAGAAACAAGAGAGGTAATGTTTGACATCTGAAGATCCAAGGCAGAAAAGATTGTCTGTCAATTTGTGTTTGTCAAGAAGATGTGGACCATCTCCTATTGCAGTGTGCTGCTGCTACTAGTTGTAGTTAATGGTTGTGAACTGGTCCAAAATGCCATGGACAACGTTGGGCACATCAATGAATTTGTTGTGCAACTAGACTTTCAGAAGAAGGATGGGAAGACATAGGCATGGTGCACCTTTAGCCCTAGTGTGAGTTCTTTAGAAGGAGAGCAATCAGAGAGCGCTTATAGACTGATTTGACTATCCAACTCTAAGAGATTGACTATCCAAAAAGATAAAAAATAAACCTAAGATGTTGCTGCGAGCCTGCAACTATACAACTATTTTACGAAGATTAATTCGTATTTCTAGCTTGTAAGTATCTGACGGAATTTTAGAGTGTCCTTATCATTTATTTTATTTCATATACACTAGACACAGAGGCGAATCGATGATTTCGAGTCTCTTGGTGCCAAGTAGGTTAATCAGTTAAATTAATTTTAGGCTTCAATCGAATTATTCATCTTTCCGGTCTATGAAATATGAACAATAATGAGATGACAATTTTTGTATTATATATACTACAAATTCTTTAAGCATGGGTCATGCTAATCTTCTCCGCATTATTTCAATTTTATTAGATGTCTCCAACAAAGCAAAAGTTTATCATTTTAATTTTAGATGCTCTTGTTGAAAGTCGAATTCAAGATCGACAACGGAAGATTTTTTTTCTCACTTATATTTGGGAAAAATCACTTTAGCTCAATTGTTTGACTATTTGAACTCTCACCTTACCATTTTCCCTTCCCTTCCCTACCTCCATATAAAAATACAAATTTTCACCCCACATTTGATTGAGATCATAAAGTAAAGAAAGTTAAAACTTTCAATTATACTATAAATATCATAAATATTCATCCTTCATTTATAATTGTACTCGACAAGTTTTTACATTTTGAAAACGATCAATGACAATATCAATGCGTATATTTATAAATGGATCACGTTTTATGTAACACGCTAGTCCAATATACTTATAAATTACTACTCCATATTAAAACAACTATTAGAAACAAACAAAAAAAATAATGTGTCGCTATCATATTAAGGAAGCAAGTTAAAATTGCAAAGGGCCGTCAGCGAGCAAGTTAAAGTTGCAAATTAAAAAACTCCTAGGGCCTCAGCGAGATTCGACCTCGCGATCTCCGTATTAGAATATGACCCTTAGCCAGCCACGCCACAAGGACTTTTGGTTCCCTGGGTGGCACGTTTAATATTTGTAATTATATTGTCGATATATACCTATATATATTAGAGTTTCCGTCGAAGCCCGTGGGAGGTGTATCACCCCCACGAACCTTAGTAGATCCACCCCTGACTAGACAGCTACCATAAGGGCACAACTATATTGAATTCTTAAAATGCATTGTACCTTGCACTCCATTTTACTGCTTGCTGCTTGGATCTTGTCATGTGACTGGCTCACAAAAAGAAGAGAAAGAATGCAACTATAGGATCTCAGAGAGAAACACCTGAGACCAACATAAAATGTGTCTCACTTTTGGGATCTCATCGTCTCCTATTCTTAATGATAAAACAAATTCTCTTCAACTTTATATGGATTCATAGAGGCCCTTGCTAATAGTGTTTGTCAACCCTTGTTTATTTTAGATCCTTACTTAAAGGCCAAGTTATTGCCTTTTTGTTTTATTTGTAACTTCTTACCGAGCTATAACTCCAACACAAATCTACTTTTACGTATGGGGATGTAGGTCAATAACACTTTGTTAGTGTTACCCTAATTTATTTTAGATCTGTACTTAAAGGCCAACTTATTGCCTACTTGTTTTATTTGTTCGAGATTTTACAGTATGTACATAATGCACATACATAAATGAACTATAAGACAATATGTATTATTGTACTTGTACACATCATATGTGTAGTGATTGTTATGTGTACTTGCAATAAAATTGTGCCCAAGTATTTCTTGTCTTGATGTGACTTCATTTTTATGCAAGCTTTTTCTAATATCTAGTAATTCTTGTAGAAATGGCAATTGAGGTTTTGTACTCCTAAAGTTGACACAAAATAGAAAACAAAAAACCGCAAGAACTTCCATTAGTCTTATCTCTTTTTTTGTGTGTAGCATACCTCTAAGAAAGAAACTCATCTATTCCAATTCAAATATGATGATTCACCATTGTTGGTCGATGGAGTTTGGCCTTGTCATGTAGGTGAATTACCTGATTTACACGTCAACACCATATCAGTTCAATTTGGGTCAAAGACATTTAGGAATTATAACAACATAAAGCAAAATGGCGAGTTGATCATCCATATGGAAGATGTACTCAGAAGTATCATTAAGAAAGGTGCTTTGAGATATGCTTTCTTGGTGTAATGTAAAATAGAGATTTATGATATGATGGAGGCCTCTGTTCCTTTTACCAATGATGCTGAGCTGAAATCAAATACTTTTTGCAGTTCTGTGAAGAAGTGTTTACCAATTATTTGATCTGAAAGGGGGGACCAAGCAGTTTTGTATACTGCTACAAATGGTTAGGGTTAGTGCTGAGCCTTGAAAAGTTTGGTGCCACTGTATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATTTCCACATATTTTGACATATTATTTGGGTCAAAATTTGGGTGAAATTTCAACATGTGTTTGACCATTGTTTTTGGGAAACATATTTAACTTTTTTAGGAGATATGATTTATACCCATATCAAAACTAACCATAGGTTTGTAGTACAAATAAATTGGATCTTTGTTCCAACAAATAACAAGTAGTGTCCAGGACATTAGAGCAATATGGTAGTTCAGAGTGAGTTAGTTCAACAAGTATCATTCCATACATTGTGAAGTAGACAGAGCACATGACATTATTACCCTTAGCCGATTGTTCATCATTTCATCAATAGTCATATCATTACTTTCATATTCACGGAATATTCTATCACTGCTTGGGTGTTTACGGAAAAATTATGTAAATATAGCGCAACAACTACTGTAGAGGGTGTTTTTGTAAACGATAAAGTTTGGTATAGAATTTAAATTTTTAAAAGATTCCAAATAATGAGATTTGACCCAATACTAGTTTTTTCTAGTATTTGGGAATTTGGGTTATTTGCCAAATAATGACAAATTGTATGGACAAACACTATTTGCCAAATTTGCCCCCAAATTTTACATGGGAAATCTATGGCCAAATGGGTCAGAAGAGTGCTCTCTGAGATGGGAACTAGAGCAGTAACTAAGCCTGGGGCATGGGTGTTGCTTTGGTACTTCCGTCAGTGAATGTTCTCTTTGTATGGGAGAATATGCTAAGCGGAAAAATAGAAATGTCCGAATGGGGCATGCAAACACACTAGAACAAGTATGCTGCTAGGAGGAACAAAAGAAGCATATGAATCAGAACTTTACCTTTGAATCAGGGCAGTTATTGTAGAAACACAATTATGTGATAGTTGTGGAGAACTAAAATTCATTGTTTGAAAAACAATGGGCTCAGGGCTGAACCAAAGGTTTGTGTTTATAAGTCTATTGACTGAAGTTAGAATTCCATTAGTGTATGACAGAGTTAACAAAATAAGCATAGGAATCAGAACTTTACCTTTGAATCACGGCAGTTAATGTAGAAACACAATTATGTGATAGTTGTGGAGAACAAAAATTTATTATTTGGAAACAATGAGCTGAACCAAAGGTATGTCTATTAACTGAAGTTAGAATTCCATGAGTGTATGACAGAGGAAAAGTTACCCTGTGAGTGTCGTGATCTATGTTCATACAATAACTGGTTAAGCAATCTTAATTTTTACCATCAGAGGTCCCTCTGAAGATTGTCATCGATGTCTTTACTCTTGTCGAGCGGAGTTGTTCAGAAGGAAGGCTTACATCTTATATAGGGAATTTGGCTCCCTTTCATACTTCAACTCTTTGGAACTTTGATATTTTCTTTCTGCTTTATCGGATTTTGAGGTTCTAATTACATTGAATTATTTGGGCCACCAGAAGCTAGTAGAGAGCTCATATAGTTCTGATGGCAGTCATAACAATTATTATCTTTGGATGTAAATGAGTTACCTTTGCTTCTTTGATGGGGTCTTCCTAATTAATGGGGATGATTATGTTCATGTTCAAAAGAATTTTCTGTGATTGTGCTTGTTTAATCATTAAACTTTAGCGTCAACCACTTGCTACTGCACTGCCCTGTTGCTTCAGACCTCTGGAATATGTTATGTTGTTTTTTTGGTCTATCCTGGGTCAGGGATGCCTTAGAAAGTTGGAGTTCACGGTAAGTTGACAACGCAATCAAGTGTATGTCGATGATGATCCCTGGTACTCTCTTTTGGTATTTATGGAAAGTGGAACAGAAGATGTTTTGATGGAATTTCCACTTCTAGAAATCTTTTGCGAGGCAGATGTCTAGTTAGCCTTTTTAGCTGTCCAAATTGACCCATGTAAATAATTTAGACCTATTCTTGGATTTTGTTAGCTCTATAGTTTAAAAAGAGGCTACAAATCCTTTTTTGTGAGCTTAACTGCTCTCTCCTTGTAATGCTAGCATCTTGTTGATGCCTTAAAAAGAATCTATCTTACTTCACAAAAAAGAAAGCATTAAACTTGCATCATTGAATAGATCTCTGTTGGCTGGTTGGATATACACCTTTATTCAATTTTTTAATCGTCGATCACGGTGTGAACTATATTAATTACTGCCCAACTGCTCGCGTGCTGATTGTACTTTATCCAGCTTGCTTATTACTTGATCTCACCAGTTGTTTGATTGAATGTACATCTTTAGGCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGA</genome_strand>
        <mrna_strand>ATCTCCCTCATTATTAT-A-CTGCATTTTCTCTTCATTTATTTGAATCAAGAATCCATTTTTCTTCGTGGGGTTTTCTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACCTCAGCCAGTTCTTTGGACACCAAGAAGACATTTTTCTCCAATTCTCGCAGATCTTTGTCAG...................................................................................................................................................................................................................................................TTGG--TGCAGAGAGGAAAGGAAGGACTTTTGTGGTTAGATCTGATGGGGGTTTGAGCTATGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATTACTAATGCTGTTGCT.......................................................................................................................................ACTAAAGAAGATACTGCTGCAGCTTCTACTTCATCAAAGCCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAACTATTGCTCTTTGAGGCCCTCCGTGAAGGTCTTGAAGAAGAAATGGACAGGGATCCCGCTGTTTGTGTAATGGGTGAAGATGTCGGTCATTATGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGACACTCCCATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACCGGTTTGCGTCCAGTTATTGAAGGAATGAACATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728232" ref_strand="+" ref_description="SGN-E728232 [LA17AE07]">
      <seq>gtcttttgctcttttctaatctttccttagattaaatcgccacaacctccttgagcactttgttttcttcgccgcaactcatttttttctctattcactgagaatatatttatagttgtaagggtcatttgaatcatcattctgatctgcattttctcttcgtttgttcgaatcaagaagctaattttctttgtggggtttactagatggctgctattatacaaggaattggtgctgctactgcactaacatcagccaattctttggataccaagaagtcacttttcgctaattctcgcagatctttgtcagagaggaaaggaaggttatttgtggctagatctgatgggcgtttaagcagtggtttgaatggacgtggaggaagagctgaacaattaatcactaatgctgttgctgcaaaagaagatgctgctgcagcttctacttcattcaagccagggcatgaactgttgctctttgaggccctccgcgaaggcctggaagaagagatggacagagatcccactgtttgtgtaatgggtgaagatgtcggtcattacggaggttcgtacaaggtgactataggccttgccccacaatatggtgatctcagggttcttgatactcctattgctgagaactctttcactggtatgggcattggagctgcaatgactggcttgcgtccagttattgagggaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="38491" stop="29461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38191" g_stop="37880" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37625" g_stop="37522" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="416" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="460" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30005" g_stop="29761" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="705" r_length="245" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E728232" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38191" e_stop="37880"/>
          <exon e_start="37625" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
          <exon e_start="30005" e_stop="29761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTTGCTCTTTTCTAATCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAGGTTTGTTGCAATTTATTAGTCTTTTAGCTAGTATTCGAAATTGGGTTTTGTTAGTATTGCTTAAATTTATGTTCTTTTTTTGTTGATTATGTTTGTTTGGTTCTCTTTTCTGATTCAGGGTTTATCTAATCTTTGTGTCTTACGGTTGTTTTTGATCGGAAGTATTAATTGGTCCACTAAAAGAATGTTTTATTTTCCAGTTAGTGCTTGTTTACTCTCCAAATTTCAGTCATTTATCTTCCATTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGGGTATATTTACTACTTCTCTAAGTTGTACTTGCATATCTTGACAGTTTAAATTGCTTCCTTCTGGTTGCCACTTCATTTGTCTCTCCTTATCTGAAACTTTATGTACGCGTGGTGGCTTGTCAGCAGGTGAGATTAGTTTTTTTCTTTAAAAATATCTTGATTAAGTTGGGCAAGGTTACATTCTTGTCTTGTAAAGAGGTTGGCTGGTAGGATTATGGTTTTCTTTTATTGTATGATTAAATTCAGCTGCTAATCTCGATGGTGTTGTCAAAGGAAATAGAGAAGTCAATAGAAGTTGCTGTTTTGCTTCAGATTATGCTAATTCATCCTGTGATAAACATGTCTAGTTCTCCTCCTTGTTCTGAATTTTGATAGCAGAAACAAAAGAAAGAGTGATGGTGGGAGTGATGTGTTCTTTTTTGTTTGGATTAGTACTGGCGTACTGGGGATATAAATAAAAAAGAAAAGAAAAGAAAGAAAGAAAGGATGGGCTACATAGTGAACAAAAGTTCAACCCCTCTTACCAACCAAAAGTAGGCTTACATAGAGAAATTCATTTTTAGTATATCTTATATTTAAGCTACACAGGTCTCCCGTAGACTTGAAAAAACGAGTTACTCTTTTTTCACTTTCTTCTTCTGGTACTTCCAATTATTAATTTATTATTTGCTCAAAAATTTTGAAGGTTCTTATTTGTTGTAATTTTTTGCTATGTTTATGGTCAAAAGAAATGATTTCCATAGCCATTCCAATAATACTTCTTTTGATAAGTATATAATTAAACTTTTTTCGAGTCATATCGTTTGGTGTTGGGGATGGGATATATATCTATATATGTATGAGAAAACTTATCCCATCGTTGCTGTATAAATGGTAGGATAAATAATTCCAAAGACTAATTAATATCCCTAACAAAAAGAATGATAAAATAGCCTTGTTGTTTATCCTGGGATTATTATCATCTATCCCTCATACCAAGTGACCCGTAAGAGATTACAATGACAACATACCCAGTGTAATTCCACAAGTGGGTCTGGGAGGGCAAATGTACGCATACCTTCTCTCTATCTTTTAGTAGAGAGGTTGTTTCCAATAGACTCTCGACTCAAAAGTAGTGTCATTAAAGCATGATATAAAAGAAAATAACCACTGCAAAATAGCAAGATAAATGAAACACATGAAGTAATATGTAGTAGAAAAAATGGAGAATAAGAACTATGCAAATACTAGATGTGATTACTAATTAAGGAGAGGATGAGTCGAGGAGATTAACCCTCGAGATTAACCCTCCAACCAAACTCTCACATTTCCTCTTCACCTGTCTGAACCACCTCTGTCTCACTTCTCTAATCTTATCCTTCACGGAGGCCACTTTCGCCTTGTCCTGTGTATATTCATTCCTAATCTCATCTCTCCTAGTATGCCTGCATATCCATTTGGGCATCCTCATTTATGCTATCTTCATCTTCTGTATGTGTGCATTCTTGACTGGCCAACCCTTTACCTCGCACTACAGTCTAGGTTTAACTATCACTCAGTAGAACTTACCTTTTTAAGTCTTGGTGAAACATTTTGTCACACAGTACTCTGGATACAAGTGCCCATTTCATTGTTAATCTTCCCATTTCCTTGGATTATAGACCCAATATACTTGAAACTCTCCCTTGGGTATGACTTGTCTATCAATCTTCACTTCCATCCCCTCCTCCACTATAGGCATTGTGTGATTGAACTTGCAGTCCAGGTCCATTGGCGTAGCCACATGGTTGTATACCCTTCGTTGGAAAAAAAAATATCGTACATAGTACATACAAGTAAGTATATACAAGAAAATGATACATGAAATGATTAAATAACATTTTTTGGACACCCTTGAGATAACATGCTGTTAATGCCCAGTATTTTCACCTCCTTTGAATGGGGAAGTGTTCGTGTGTTCGAATCTCACTAGTTCTACTTTTTGAAACGAGCTTTTGTTGTGCTATTTCTGGACACCCTTCTGGTTCCGCCACTGCCAGTTACTCTATTTTAATCCTACGTTTGCTTAACCTGAAACCTTTAGATTCTAGGGTCTGTTTGCCAAACTACTCTATCATTAACTCCACCACGCGTCTCATAGATATCAATACAGATCGATACTATGTCATTTGCGAATAACATACATCAAGATGCCACCCCTTAAATACGCCACGTCAATTCGTCCATCACTTTGGTTAAAAGAATTGCGATGTATGATTGAAGTGCCCAACAAAATAATGTACACCACATGCTAGCCTGGACTTCGGATTTAGAGGTTGTGATAGGTGGAGTTTTCTAAGTTAAGTCATACACTCACTATATATTTGTGAGGGAGGACTCTGACTTTCCACACTTATCAACCTGAAATCCTAGGAAGGAAAGATGTGTTTCTCTTCTTGCCTAGAAACAAGAGAGGTAATGTTTGACATCTGAAGATCCAAGGCAGAAAAGATTGTCTGTCAATTTGTGTTTGTCAAGAAGATGTGGACCATCTCCTATTGCAGTGTGCTGCTGCTACTAGTTGTAGTTAATGGTTGTGAACTGGTCCAAAATGCCATGGACAACGTTGGGCACATCAATGAATTTGTTGTGCAACTAGACTTTCAGAAGAAGGATGGGAAGACATAGGCATGGTGCACCTTTAGCCCTAGTGTGAGTTCTTTAGAAGGAGAGCAATCAGAGAGCGCTTATAGACTGATTTGACTATCCAACTCTAAGAGATTGACTATCCAAAAAGATAAAAAATAAACCTAAGATGTTGCTGCGAGCCTGCAACTATACAACTATTTTACGAAGATTAATTCGTATTTCTAGCTTGTAAGTATCTGACGGAATTTTAGAGTGTCCTTATCATTTATTTTATTTCATATACACTAGACACAGAGGCGAATCGATGATTTCGAGTCTCTTGGTGCCAAGTAGGTTAATCAGTTAAATTAATTTTAGGCTTCAATCGAATTATTCATCTTTCCGGTCTATGAAATATGAACAATAATGAGATGACAATTTTTGTATTATATATACTACAAATTCTTTAAGCATGGGTCATGCTAATCTTCTCCGCATTATTTCAATTTTATTAGATGTCTCCAACAAAGCAAAAGTTTATCATTTTAATTTTAGATGCTCTTGTTGAAAGTCGAATTCAAGATCGACAACGGAAGATTTTTTTTCTCACTTATATTTGGGAAAAATCACTTTAGCTCAATTGTTTGACTATTTGAACTCTCACCTTACCATTTTCCCTTCCCTTCCCTACCTCCATATAAAAATACAAATTTTCACCCCACATTTGATTGAGATCATAAAGTAAAGAAAGTTAAAACTTTCAATTATACTATAAATATCATAAATATTCATCCTTCATTTATAATTGTACTCGACAAGTTTTTACATTTTGAAAACGATCAATGACAATATCAATGCGTATATTTATAAATGGATCACGTTTTATGTAACACGCTAGTCCAATATACTTATAAATTACTACTCCATATTAAAACAACTATTAGAAACAAACAAAAAAAATAATGTGTCGCTATCATATTAAGGAAGCAAGTTAAAATTGCAAAGGGCCGTCAGCGAGCAAGTTAAAGTTGCAAATTAAAAAACTCCTAGGGCCTCAGCGAGATTCGACCTCGCGATCTCCGTATTAGAATATGACCCTTAGCCAGCCACGCCACAAGGACTTTTGGTTCCCTGGGTGGCACGTTTAATATTTGTAATTATATTGTCGATATATACCTATATATATTAGAGTTTCCGTCGAAGCCCGTGGGAGGTGTATCACCCCCACGAACCTTAGTAGATCCACCCCTGACTAGACAGCTACCATAAGGGCACAACTATATTGAATTCTTAAAATGCATTGTACCTTGCACTCCATTTTACTGCTTGCTGCTTGGATCTTGTCATGTGACTGGCTCACAAAAAGAAGAGAAAGAATGCAACTATAGGATCTCAGAGAGAAACACCTGAGACCAACATAAAATGTGTCTCACTTTTGGGATCTCATCGTCTCCTATTCTTAATGATAAAACAAATTCTCTTCAACTTTATATGGATTCATAGAGGCCCTTGCTAATAGTGTTTGTCAACCCTTGTTTATTTTAGATCCTTACTTAAAGGCCAAGTTATTGCCTTTTTGTTTTATTTGTAACTTCTTACCGAGCTATAACTCCAACACAAATCTACTTTTACGTATGGGGATGTAGGTCAATAACACTTTGTTAGTGTTACCCTAATTTATTTTAGATCTGTACTTAAAGGCCAACTTATTGCCTACTTGTTTTATTTGTTCGAGATTTTACAGTATGTACATAATGCACATACATAAATGAACTATAAGACAATATGTATTATTGTACTTGTACACATCATATGTGTAGTGATTGTTATGTGTACTTGCAATAAAATTGTGCCCAAGTATTTCTTGTCTTGATGTGACTTCATTTTTATGCAAGCTTTTTCTAATATCTAGTAATTCTTGTAGAAATGGCAATTGAGGTTTTGTACTCCTAAAGTTGACACAAAATAGAAAACAAAAAACCGCAAGAACTTCCATTAGTCTTATCTCTTTTTTTGTGTGTAGCATACCTCTAAGAAAGAAACTCATCTATTCCAATTCAAATATGATGATTCACCATTGTTGGTCGATGGAGTTTGGCCTTGTCATGTAGGTGAATTACCTGATTTACACGTCAACACCATATCAGTTCAATTTGGGTCAAAGACATTTAGGAATTATAACAACATAAAGCAAAATGGCGAGTTGATCATCCATATGGAAGATGTACTCAGAAGTATCATTAAGAAAGGTGCTTTGAGATATGCTTTCTTGGTGTAATGTAAAATAGAGATTTATGATATGATGGAGGCCTCTGTTCCTTTTACCAATGATGCTGAGCTGAAATCAAATACTTTTTGCAGTTCTGTGAAGAAGTGTTTACCAATTATTTGATCTGAAAGGGGGGACCAAGCAGTTTTGTATACTGCTACAAATGGTTAGGGTTAGTGCTGAGCCTTGAAAAGTTTGGTGCCACTGTATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATTTCCACATATTTTGACATATTATTTGGGTCAAAATTTGGGTGAAATTTCAACATGTGTTTGACCATTGTTTTTGGGAAACATATTTAACTTTTTTAGGAGATATGATTTATACCCATATCAAAACTAACCATAGGTTTGTAGTACAAATAAATTGGATCTTTGTTCCAACAAATAACAAGTAGTGTCCAGGACATTAGAGCAATATGGTAGTTCAGAGTGAGTTAGTTCAACAAGTATCATTCCATACATTGTGAAGTAGACAGAGCACATGACATTATTACCCTTAGCCGATTGTTCATCATTTCATCAATAGTCATATCATTACTTTCATATTCACGGAATATTCTATCACTGCTTGGGTGTTTACGGAAAAATTATGTAAATATAGCGCAACAACTACTGTAGAGGGTGTTTTTGTAAACGATAAAGTTTGGTATAGAATTTAAATTTTTAAAAGATTCCAAATAATGAGATTTGACCCAATACTAGTTTTTTCTAGTATTTGGGAATTTGGGTTATTTGCCAAATAATGACAAATTGTATGGACAAACACTATTTGCCAAATTTGCCCCCAAATTTTACATGGGAAATCTATGGCCAAATGGGTCAGAAGAGTGCTCTCTGAGATGGGAACTAGAGCAGTAACTAAGCCTGGGGCATGGGTGTTGCTTTGGTACTTCCGTCAGTGAATGTTCTCTTTGTATGGGAGAATATGCTAAGCGGAAAAATAGAAATGTCCGAATGGGGCATGCAAACACACTAGAACAAGTATGCTGCTAGGAGGAACAAAAGAAGCATATGAATCAGAACTTTACCTTTGAATCAGGGCAGTTATTGTAGAAACACAATTATGTGATAGTTGTGGAGAACTAAAATTCATTGTTTGAAAAACAATGGGCTCAGGGCTGAACCAAAGGTTTGTGTTTATAAGTCTATTGACTGAAGTTAGAATTCCATTAGTGTATGACAGAGTTAACAAAATAAGCATAGGAATCAGAACTTTACCTTTGAATCACGGCAGTTAATGTAGAAACACAATTATGTGATAGTTGTGGAGAACAAAAATTTATTATTTGGAAACAATGAGCTGAACCAAAGGTATGTCTATTAACTGAAGTTAGAATTCCATGAGTGTATGACAGAGGAAAAGTTACCCTGTGAGTGTCGTGATCTATGTTCATACAATAACTGGTTAAGCAATCTTAATTTTTACCATCAGAGGTCCCTCTGAAGATTGTCATCGATGTCTTTACTCTTGTCGAGCGGAGTTGTTCAGAAGGAAGGCTTACATCTTATATAGGGAATTTGGCTCCCTTTCATACTTCAACTCTTTGGAACTTTGATATTTTCTTTCTGCTTTATCGGATTTTGAGGTTCTAATTACATTGAATTATTTGGGCCACCAGAAGCTAGTAGAGAGCTCATATAGTTCTGATGGCAGTCATAACAATTATTATCTTTGGATGTAAATGAGTTACCTTTGCTTCTTTGATGGGGTCTTCCTAATTAATGGGGATGATTATGTTCATGTTCAAAAGAATTTTCTGTGATTGTGCTTGTTTAATCATTAAACTTTAGCGTCAACCACTTGCTACTGCACTGCCCTGTTGCTTCAGACCTCTGGAATATGTTATGTTGTTTTTTTGGTCTATCCTGGGTCAGGGATGCCTTAGAAAGTTGGAGTTCACGGTAAGTTGACAACGCAATCAAGTGTATGTCGATGATGATCCCTGGTACTCTCTTTTGGTATTTATGGAAAGTGGAACAGAAGATGTTTTGATGGAATTTCCACTTCTAGAAATCTTTTGCGAGGCAGATGTCTAGTTAGCCTTTTTAGCTGTCCAAATTGACCCATGTAAATAATTTAGACCTATTCTTGGATTTTGTTAGCTCTATAGTTTAAAAAGAGGCTACAAATCCTTTTTTGTGAGCTTAACTGCTCTCTCCTTGTAATGCTAGCATCTTGTTGATGCCTTAAAAAGAATCTATCTTACTTCACAAAAAAGAAAGCATTAAACTTGCATCATTGAATAGATCTCTGTTGGCTGGTTGGATATACACCTTTATTCAATTTTTTAATCGTCGATCACGGTGTGAACTATATTAATTACTGCCCAACTGCTCGCGTGCTGATTGTACTTTATCCAGCTTGCTTATTACTTGATCTCACCAGTTGTTTGATTGAATGTACATCTTTAGGCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGA</genome_strand>
        <mrna_strand>GTCTTTTGCTCTTTTCTAATCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG..............................................................................................................................................................................................................................................................AGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT.......................................................................................................................................GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725870" ref_strand="+" ref_description="SGN-E725870 [LA08CC11]">
      <seq>ctcttttctaatctttccttagattaaatcgccacaacctccttgagcactttgttttcttcgccgcaactcatttttttctctattcactgagaatatatttatagttgtaagggtcatttgaatcatcattctgatctgcattttctcttcgtttgttcgaatcaagaagctaattttctttgcggggtttactagatggctgctattatacaaggaattggtgctgctactgcactaacatcagccaattctttggataccaagaagtcacttttcgctaattctcgcagatctttgtcagagaggaaaggaaggttatttgtggctagatctgatgggcgtttaagcagtggtttgaatggacgtggaggaagagctgaacaattaatcactaatgctgttgctgcaaaagaagatgctgctgcagcttctacttcattcaagccagggcatgaactgttgctctttgaggccctccgcgaaggcctggaagaagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="38483" stop="29655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38183" g_stop="37880" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37625" g_stop="37522" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="408" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="452" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30005" g_stop="29955" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="503" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E725870" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38183" e_stop="37880"/>
          <exon e_start="37625" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
          <exon e_start="30005" e_stop="29955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTAATCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAGGTTTGTTGCAATTTATTAGTCTTTTAGCTAGTATTCGAAATTGGGTTTTGTTAGTATTGCTTAAATTTATGTTCTTTTTTTGTTGATTATGTTTGTTTGGTTCTCTTTTCTGATTCAGGGTTTATCTAATCTTTGTGTCTTACGGTTGTTTTTGATCGGAAGTATTAATTGGTCCACTAAAAGAATGTTTTATTTTCCAGTTAGTGCTTGTTTACTCTCCAAATTTCAGTCATTTATCTTCCATTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGGGTATATTTACTACTTCTCTAAGTTGTACTTGCATATCTTGACAGTTTAAATTGCTTCCTTCTGGTTGCCACTTCATTTGTCTCTCCTTATCTGAAACTTTATGTACGCGTGGTGGCTTGTCAGCAGGTGAGATTAGTTTTTTTCTTTAAAAATATCTTGATTAAGTTGGGCAAGGTTACATTCTTGTCTTGTAAAGAGGTTGGCTGGTAGGATTATGGTTTTCTTTTATTGTATGATTAAATTCAGCTGCTAATCTCGATGGTGTTGTCAAAGGAAATAGAGAAGTCAATAGAAGTTGCTGTTTTGCTTCAGATTATGCTAATTCATCCTGTGATAAACATGTCTAGTTCTCCTCCTTGTTCTGAATTTTGATAGCAGAAACAAAAGAAAGAGTGATGGTGGGAGTGATGTGTTCTTTTTTGTTTGGATTAGTACTGGCGTACTGGGGATATAAATAAAAAAGAAAAGAAAAGAAAGAAAGAAAGGATGGGCTACATAGTGAACAAAAGTTCAACCCCTCTTACCAACCAAAAGTAGGCTTACATAGAGAAATTCATTTTTAGTATATCTTATATTTAAGCTACACAGGTCTCCCGTAGACTTGAAAAAACGAGTTACTCTTTTTTCACTTTCTTCTTCTGGTACTTCCAATTATTAATTTATTATTTGCTCAAAAATTTTGAAGGTTCTTATTTGTTGTAATTTTTTGCTATGTTTATGGTCAAAAGAAATGATTTCCATAGCCATTCCAATAATACTTCTTTTGATAAGTATATAATTAAACTTTTTTCGAGTCATATCGTTTGGTGTTGGGGATGGGATATATATCTATATATGTATGAGAAAACTTATCCCATCGTTGCTGTATAAATGGTAGGATAAATAATTCCAAAGACTAATTAATATCCCTAACAAAAAGAATGATAAAATAGCCTTGTTGTTTATCCTGGGATTATTATCATCTATCCCTCATACCAAGTGACCCGTAAGAGATTACAATGACAACATACCCAGTGTAATTCCACAAGTGGGTCTGGGAGGGCAAATGTACGCATACCTTCTCTCTATCTTTTAGTAGAGAGGTTGTTTCCAATAGACTCTCGACTCAAAAGTAGTGTCATTAAAGCATGATATAAAAGAAAATAACCACTGCAAAATAGCAAGATAAATGAAACACATGAAGTAATATGTAGTAGAAAAAATGGAGAATAAGAACTATGCAAATACTAGATGTGATTACTAATTAAGGAGAGGATGAGTCGAGGAGATTAACCCTCGAGATTAACCCTCCAACCAAACTCTCACATTTCCTCTTCACCTGTCTGAACCACCTCTGTCTCACTTCTCTAATCTTATCCTTCACGGAGGCCACTTTCGCCTTGTCCTGTGTATATTCATTCCTAATCTCATCTCTCCTAGTATGCCTGCATATCCATTTGGGCATCCTCATTTATGCTATCTTCATCTTCTGTATGTGTGCATTCTTGACTGGCCAACCCTTTACCTCGCACTACAGTCTAGGTTTAACTATCACTCAGTAGAACTTACCTTTTTAAGTCTTGGTGAAACATTTTGTCACACAGTACTCTGGATACAAGTGCCCATTTCATTGTTAATCTTCCCATTTCCTTGGATTATAGACCCAATATACTTGAAACTCTCCCTTGGGTATGACTTGTCTATCAATCTTCACTTCCATCCCCTCCTCCACTATAGGCATTGTGTGATTGAACTTGCAGTCCAGGTCCATTGGCGTAGCCACATGGTTGTATACCCTTCGTTGGAAAAAAAAATATCGTACATAGTACATACAAGTAAGTATATACAAGAAAATGATACATGAAATGATTAAATAACATTTTTTGGACACCCTTGAGATAACATGCTGTTAATGCCCAGTATTTTCACCTCCTTTGAATGGGGAAGTGTTCGTGTGTTCGAATCTCACTAGTTCTACTTTTTGAAACGAGCTTTTGTTGTGCTATTTCTGGACACCCTTCTGGTTCCGCCACTGCCAGTTACTCTATTTTAATCCTACGTTTGCTTAACCTGAAACCTTTAGATTCTAGGGTCTGTTTGCCAAACTACTCTATCATTAACTCCACCACGCGTCTCATAGATATCAATACAGATCGATACTATGTCATTTGCGAATAACATACATCAAGATGCCACCCCTTAAATACGCCACGTCAATTCGTCCATCACTTTGGTTAAAAGAATTGCGATGTATGATTGAAGTGCCCAACAAAATAATGTACACCACATGCTAGCCTGGACTTCGGATTTAGAGGTTGTGATAGGTGGAGTTTTCTAAGTTAAGTCATACACTCACTATATATTTGTGAGGGAGGACTCTGACTTTCCACACTTATCAACCTGAAATCCTAGGAAGGAAAGATGTGTTTCTCTTCTTGCCTAGAAACAAGAGAGGTAATGTTTGACATCTGAAGATCCAAGGCAGAAAAGATTGTCTGTCAATTTGTGTTTGTCAAGAAGATGTGGACCATCTCCTATTGCAGTGTGCTGCTGCTACTAGTTGTAGTTAATGGTTGTGAACTGGTCCAAAATGCCATGGACAACGTTGGGCACATCAATGAATTTGTTGTGCAACTAGACTTTCAGAAGAAGGATGGGAAGACATAGGCATGGTGCACCTTTAGCCCTAGTGTGAGTTCTTTAGAAGGAGAGCAATCAGAGAGCGCTTATAGACTGATTTGACTATCCAACTCTAAGAGATTGACTATCCAAAAAGATAAAAAATAAACCTAAGATGTTGCTGCGAGCCTGCAACTATACAACTATTTTACGAAGATTAATTCGTATTTCTAGCTTGTAAGTATCTGACGGAATTTTAGAGTGTCCTTATCATTTATTTTATTTCATATACACTAGACACAGAGGCGAATCGATGATTTCGAGTCTCTTGGTGCCAAGTAGGTTAATCAGTTAAATTAATTTTAGGCTTCAATCGAATTATTCATCTTTCCGGTCTATGAAATATGAACAATAATGAGATGACAATTTTTGTATTATATATACTACAAATTCTTTAAGCATGGGTCATGCTAATCTTCTCCGCATTATTTCAATTTTATTAGATGTCTCCAACAAAGCAAAAGTTTATCATTTTAATTTTAGATGCTCTTGTTGAAAGTCGAATTCAAGATCGACAACGGAAGATTTTTTTTCTCACTTATATTTGGGAAAAATCACTTTAGCTCAATTGTTTGACTATTTGAACTCTCACCTTACCATTTTCCCTTCCCTTCCCTACCTCCATATAAAAATACAAATTTTCACCCCACATTTGATTGAGATCATAAAGTAAAGAAAGTTAAAACTTTCAATTATACTATAAATATCATAAATATTCATCCTTCATTTATAATTGTACTCGACAAGTTTTTACATTTTGAAAACGATCAATGACAATATCAATGCGTATATTTATAAATGGATCACGTTTTATGTAACACGCTAGTCCAATATACTTATAAATTACTACTCCATATTAAAACAACTATTAGAAACAAACAAAAAAAATAATGTGTCGCTATCATATTAAGGAAGCAAGTTAAAATTGCAAAGGGCCGTCAGCGAGCAAGTTAAAGTTGCAAATTAAAAAACTCCTAGGGCCTCAGCGAGATTCGACCTCGCGATCTCCGTATTAGAATATGACCCTTAGCCAGCCACGCCACAAGGACTTTTGGTTCCCTGGGTGGCACGTTTAATATTTGTAATTATATTGTCGATATATACCTATATATATTAGAGTTTCCGTCGAAGCCCGTGGGAGGTGTATCACCCCCACGAACCTTAGTAGATCCACCCCTGACTAGACAGCTACCATAAGGGCACAACTATATTGAATTCTTAAAATGCATTGTACCTTGCACTCCATTTTACTGCTTGCTGCTTGGATCTTGTCATGTGACTGGCTCACAAAAAGAAGAGAAAGAATGCAACTATAGGATCTCAGAGAGAAACACCTGAGACCAACATAAAATGTGTCTCACTTTTGGGATCTCATCGTCTCCTATTCTTAATGATAAAACAAATTCTCTTCAACTTTATATGGATTCATAGAGGCCCTTGCTAATAGTGTTTGTCAACCCTTGTTTATTTTAGATCCTTACTTAAAGGCCAAGTTATTGCCTTTTTGTTTTATTTGTAACTTCTTACCGAGCTATAACTCCAACACAAATCTACTTTTACGTATGGGGATGTAGGTCAATAACACTTTGTTAGTGTTACCCTAATTTATTTTAGATCTGTACTTAAAGGCCAACTTATTGCCTACTTGTTTTATTTGTTCGAGATTTTACAGTATGTACATAATGCACATACATAAATGAACTATAAGACAATATGTATTATTGTACTTGTACACATCATATGTGTAGTGATTGTTATGTGTACTTGCAATAAAATTGTGCCCAAGTATTTCTTGTCTTGATGTGACTTCATTTTTATGCAAGCTTTTTCTAATATCTAGTAATTCTTGTAGAAATGGCAATTGAGGTTTTGTACTCCTAAAGTTGACACAAAATAGAAAACAAAAAACCGCAAGAACTTCCATTAGTCTTATCTCTTTTTTTGTGTGTAGCATACCTCTAAGAAAGAAACTCATCTATTCCAATTCAAATATGATGATTCACCATTGTTGGTCGATGGAGTTTGGCCTTGTCATGTAGGTGAATTACCTGATTTACACGTCAACACCATATCAGTTCAATTTGGGTCAAAGACATTTAGGAATTATAACAACATAAAGCAAAATGGCGAGTTGATCATCCATATGGAAGATGTACTCAGAAGTATCATTAAGAAAGGTGCTTTGAGATATGCTTTCTTGGTGTAATGTAAAATAGAGATTTATGATATGATGGAGGCCTCTGTTCCTTTTACCAATGATGCTGAGCTGAAATCAAATACTTTTTGCAGTTCTGTGAAGAAGTGTTTACCAATTATTTGATCTGAAAGGGGGGACCAAGCAGTTTTGTATACTGCTACAAATGGTTAGGGTTAGTGCTGAGCCTTGAAAAGTTTGGTGCCACTGTATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATTTCCACATATTTTGACATATTATTTGGGTCAAAATTTGGGTGAAATTTCAACATGTGTTTGACCATTGTTTTTGGGAAACATATTTAACTTTTTTAGGAGATATGATTTATACCCATATCAAAACTAACCATAGGTTTGTAGTACAAATAAATTGGATCTTTGTTCCAACAAATAACAAGTAGTGTCCAGGACATTAGAGCAATATGGTAGTTCAGAGTGAGTTAGTTCAACAAGTATCATTCCATACATTGTGAAGTAGACAGAGCACATGACATTATTACCCTTAGCCGATTGTTCATCATTTCATCAATAGTCATATCATTACTTTCATATTCACGGAATATTCTATCACTGCTTGGGTGTTTACGGAAAAATTATGTAAATATAGCGCAACAACTACTGTAGAGGGTGTTTTTGTAAACGATAAAGTTTGGTATAGAATTTAAATTTTTAAAAGATTCCAAATAATGAGATTTGACCCAATACTAGTTTTTTCTAGTATTTGGGAATTTGGGTTATTTGCCAAATAATGACAAATTGTATGGACAAACACTATTTGCCAAATTTGCCCCCAAATTTTACATGGGAAATCTATGGCCAAATGGGTCAGAAGAGTGCTCTCTGAGATGGGAACTAGAGCAGTAACTAAGCCTGGGGCATGGGTGTTGCTTTGGTACTTCCGTCAGTGAATGTTCTCTTTGTATGGGAGAATATGCTAAGCGGAAAAATAGAAATGTCCGAATGGGGCATGCAAACACACTAGAACAAGTATGCTGCTAGGAGGAACAAAAGAAGCATATGAATCAGAACTTTACCTTTGAATCAGGGCAGTTATTGTAGAAACACAATTATGTGATAGTTGTGGAGAACTAAAATTCATTGTTTGAAAAACAATGGGCTCAGGGCTGAACCAAAGGTTTGTGTTTATAAGTCTATTGACTGAAGTTAGAATTCCATTAGTGTATGACAGAGTTAACAAAATAAGCATAGGAATCAGAACTTTACCTTTGAATCACGGCAGTTAATGTAGAAACACAATTATGTGATAGTTGTGGAGAACAAAAATTTATTATTTGGAAACAATGAGCTGAACCAAAGGTATGTCTATTAACTGAAGTTAGAATTCCATGAGTGTATGACAGAGGAAAAGTTACCCTGTGAGTGTCGTGATCTATGTTCATACAATAACTGGTTAAGCAATCTTAATTTTTACCATCAGAGGTCCCTCTGAAGATTGTCATCGATGTCTTTACTCTTGTCGAGCGGAGTTGTTCAGAAGGAAGGCTTACATCTTATATAGGGAATTTGGCTCCCTTTCATACTTCAACTCTTTGGAACTTTGATATTTTCTTTCTGCTTTATCGGATTTTGAGGTTCTAATTACATTGAATTATTTGGGCCACCAGAAGCTAGTAGAGAGCTCATATAGTTCTGATGGCAGTCATAACAATTATTATCTTTGGATGTAAATGAGTTACCTTTGCTTCTTTGATGGGGTCTTCCTAATTAATGGGGATGATTATGTTCATGTTCAAAAGAATTTTCTGTGATTGTGCTTGTTTAATCATTAAACTTTAGCGTCAACCACTTGCTACTGCACTGCCCTGTTGCTTCAGACCTCTGGAATATGTTATGTTGTTTTTTTGGTCTATCCTGGGTCAGGGATGCCTTAGAAAGTTGGAGTTCACGGTAAGTTGACAACGCAATCAAGTGTATGTCGATGATGATCCCTGGTACTCTCTTTTGGTATTTATGGAAAGTGGAACAGAAGATGTTTTGATGGAATTTCCACTTCTAGAAATCTTTTGCGAGGCAGATGTCTAGTTAGCCTTTTTAGCTGTCCAAATTGACCCATGTAAATAATTTAGACCTATTCTTGGATTTTGTTAGCTCTATAGTTTAAAAAGAGGCTACAAATCCTTTTTTGTGAGCTTAACTGCTCTCTCCTTGTAATGCTAGCATCTTGTTGATGCCTTAAAAAGAATCTATCTTACTTCACAAAAAAGAAAGCATTAAACTTGCATCATTGAATAGATCTCTGTTGGCTGGTTGGATATACACCTTTATTCAATTTTTTAATCGTCGATCACGGTGTGAACTATATTAATTACTGCCCAACTGCTCGCGTGCTGATTGTACTTTATCCAGCTTGCTTATTACTTGATCTCACCAGTTGTTTGATTGAATGTACATCTTTAGGCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGAT</genome_strand>
        <mrna_strand>CTCTTTTCTAATCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGCGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG..............................................................................................................................................................................................................................................................AGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT.......................................................................................................................................GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305071" ref_strand="+" ref_description="SGN-E305071 [cLEX-10-N22]">
      <seq>ttagattaaatcgccacaacctccttgagcactttgttttcttcgccgcaactcatttttttctctattcactgagaatatatttatagttgtaagggtcatttgaatcatcattctgatctgcattttctcttcgtttgttcgaatcaagaagctaattttctttgtggggtttactagatggctgctattatacaaggaattggtgctgctactgcactaacatcagccaattctttggataccaagaagtcacttttcgctaattctcgcagatctttgtcagagaggaaaggaaggttatttgtggctagatctgatgggcgtttaagcagtggtttgaatggacgtggaggaagagctgaacaattaatcactaatgctgttgctgcaaaagaagatgctgctgcagcttctacttcattcaagccagggcatgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="38465" stop="37039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38165" g_stop="37880" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37625" g_stop="37522" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="390" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="434" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E305071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38165" e_stop="37880"/>
          <exon e_start="37625" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAGGTTTGTTGCAATTTATTAGTCTTTTAGCTAGTATTCGAAATTGGGTTTTGTTAGTATTGCTTAAATTTATGTTCTTTTTTTGTTGATTATGTTTGTTTGGTTCTCTTTTCTGATTCAGGGTTTATCTAATCTTTGTGTCTTACGGTTGTTTTTGATCGGAAGTATTAATTGGTCCACTAAAAGAATGTTTTATTTTCCAGTTAGTGCTTGTTTACTCTCCAAATTTCAGTCATTTATCTTCCATTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG</genome_strand>
        <mrna_strand>TTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG..............................................................................................................................................................................................................................................................AGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT.......................................................................................................................................GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337478" ref_strand="+" ref_description="SGN-E337478 [cTOE-11-H13]">
      <seq>tttttttctctattcactgagaatatatttatagttgtaagggtcatttgaatcatcattctgatctgcattttctcttcgtttgttcgaatcaagaagtcacttttcgctaattctcgcagatctttgtcagagaggaaaggaaggttatttgtggctagatctgatgggcgtttaagcagtggtttgaatggacgtggaggaagagctgaacaattaatcactaatgctgttgctgcaaaagaagatgctgctgcaacttctacttcattcaagccagggcatgaactgttgctctttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="38410" stop="37021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38110" g_stop="38012" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38011" i_stop="37914" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37913" g_stop="37880" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="133" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37625" g_stop="37522" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="237" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="281" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E337478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38110" e_stop="38012"/>
          <exon e_start="37913" e_stop="37880"/>
          <exon e_start="37625" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAGGTTTGTTGCAATTTATTAGTCTTTTAGCTAGTATTCGAAATTGGGTTTTGTTAGTATTGCTTAAATTTATGTTCTTTTTTTGTTGATTATGTTTGTTTGGTTCTCTTTTCTGATTCAGGGTTTATCTAATCTTTGTGTCTTACGGTTGTTTTTGATCGGAAGTATTAATTGGTCCACTAAAAGAATGTTTTATTTTCCAGTTAGTGCTTGTTTACTCTCCAAATTTCAGTCATTTATCTTCCATTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG</genome_strand>
        <mrna_strand>TTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAG..................................................................................................TCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG..............................................................................................................................................................................................................................................................AGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT.......................................................................................................................................GCAAAAGAAGATGCTGCTGCAACTTCTACTTCATTCAAGCCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320806" ref_strand="+" ref_description="SGN-E320806 [cTOB-27-I6]">
      <seq>tctttccttagattaaatcgccacaacctccttgagcactttgttttcttcgccgcaactcatttttttctctattcactgagaatatatttatagttgtaagggtcatttgaatcatcattctgatctgcattttctcttcgtttgttcgaatcaagaagctaattttctttgtggggtttactagatggctgctattatacaaggaattggtgctgctactgcactaacatcagccaattctttggataccaagaagtcacttttcgctaattctcgcagatctttgtcagagaggaaaggaaggttatttgtggcttagatctgatgggcgttaagcagtggttngaatggacgtggaggaagagctgaacaattaatcactaatgctgttgctgcaaaagaagatgctgctgcagcttctacttcattcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="38472" stop="37047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38172" g_stop="37880" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37625" g_stop="37522" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="397" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37386" g_stop="37347" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="437" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E320806" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38172" e_stop="37880"/>
          <exon e_start="37625" e_stop="37522"/>
          <exon e_start="37386" e_stop="37347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAGGTTTGTTGCAATTTATTAGTCTTTTAGCTAGTATTCGAAATTGGGTTTTGTTAGTATTGCTTAAATTTATGTTCTTTTTTTGTTGATTATGTTTGTTTGGTTCTCTTTTCTGATTCAGGGTTTATCTAATCTTTGTGTCTTACGGTTGTTTTTGATCGGAAGTATTAATTGGTCCACTAAAAGAATGTTTTATTTTCCAGTTAGTGCTTGTTTACTCTCCAAATTTCAGTCATTTATCTTCCATTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGC-TAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGC</genome_strand>
        <mrna_strand>TCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG..............................................................................................................................................................................................................................................................AGAGGAAAGGAAGGTTATTTGTGGCTTAGATCTGATGGGCG-TTAAGCAGTGGTTNGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT.......................................................................................................................................GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725861" ref_strand="+" ref_description="SGN-E725861 [LA08CB11]">
      <seq>ctcttttctaatctttccttagattaaatcgccacaacctccttgagcactttgttttcttcgccgcaactcatttttttctctattcactgagaatatatttatagttgtaagggtcatttgaatcatcattctgatctgcattttctcttcgtttgttcgaatcaagaagctaattgtctttgcggggtttactagatggctgctattatacaaggaattggtgctgctactgcactaacatcagccaattctttggataccaagaagtcacttttcgctaattctcgcagatctttgtcatagaggaaaggaaggttatatgtggctagatctgatgggcgtttaatcaatggattgaatggacgtggaggaagagctgaacagttaatcactaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="38483" stop="37229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38183" g_stop="37880" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37625" g_stop="37529" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="401" r_length="97" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E725861" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38183" e_stop="37880"/>
          <exon e_start="37625" e_stop="37529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTAATCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAGGTTTGTTGCAATTTATTAGTCTTTTAGCTAGTATTCGAAATTGGGTTTTGTTAGTATTGCTTAAATTTATGTTCTTTTTTTGTTGATTATGTTTGTTTGGTTCTCTTTTCTGATTCAGGGTTTATCTAATCTTTGTGTCTTACGGTTGTTTTTGATCGGAAGTATTAATTGGTCCACTAAAAGAATGTTTTATTTTCCAGTTAGTGCTTGTTTACTCTCCAAATTTCAGTCATTTATCTTCCATTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGC</genome_strand>
        <mrna_strand>CTCTTTTCTAATCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTGTCTTTGCGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAT..............................................................................................................................................................................................................................................................AGAGGAAAGGAAGGTTATATGTGGCTAGATCTGATGGGCGTTTAATCAATGGATTGAATGGACGTGGAGGAAGAGCTGAACAGTTAATCACTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745037" ref_strand="+" ref_description="SGN-E745037 [GI|83833849]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcctagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="68219" stop="67477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67918" g_stop="67776" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E745037" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67918" e_stop="67776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCCCTTGTTGATTATAATTGTTTATAATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAAAAATATTCTGCGAGTAAGTATGCCCAGACTATGTCATCCTAAGGTTGAAACCGGTAGG-AAAGAAGA</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCTAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745038" ref_strand="+" ref_description="SGN-E745038 [GI|83833848]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="68219" stop="67477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67918" g_stop="67776" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E745038" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67918" e_stop="67776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCCCTTGTTGATTATAATTGTTTATAATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAAAAATATTCTGCGAGTAAGTATGCCCAGACTATGTCATCCTAAGGTTGAAACCGGTAGG-AAAGAAGA</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745039" ref_strand="+" ref_description="SGN-E745039 [GI|83833847]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="68219" stop="67477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67918" g_stop="67776" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E745039" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67918" e_stop="67776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCCCTTGTTGATTATAATTGTTTATAATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAAAAATATTCTGCGAGTAAGTATGCCCAGACTATGTCATCCTAAGGTTGAAACCGGTAGG-AAAGAAGA</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745041" ref_strand="+" ref_description="SGN-E745041 [GI|83833845]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0198I15-ZLEof/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0198I15.2" temp_strand="-" temp_description="C00HBa0198I15.2  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="68219" stop="67477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67918" g_stop="67776" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0198I15.2" gen_strand="-" ref_id="SGN-E745041" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0198I15.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67918" e_stop="67776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCCCTTGTTGATTATAATTGTTTATAATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAAAAATATTCTGCGAGTAAGTATGCCCAGACTATGTCATCCTAAGGTTGAAACCGGTAGG-AAAGAAGA</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>38</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="38194" PGL_stop="28710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38194" e_stop="37880"/>
            <exon e_start="37625" e_stop="37522"/>
            <exon e_start="37386" e_stop="37343"/>
            <exon e_start="30005" e_stop="28710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38194" e_stop="37880" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37625" e_stop="37522" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37386" e_stop="37343" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337"/>
          </intron>
          <exon e_serial="4" e_score="0.937">
            <gDNA_exon_boundary e_start="30005" e_stop="28710" e_length="1296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38194" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38191" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38183" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38183" stop="37880"/>
              <exon start="37625" stop="37529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38175" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38172" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38165" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37524" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30005" stop="29304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29994" stop="29433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29955" stop="29101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29955" stop="29176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29809" stop="29157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29798" stop="29131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29440" stop="28738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29440" stop="28739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29439" stop="28910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29357" stop="28829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29256" stop="28710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29250" stop="28739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGTCTTTTGCTCTTTTCTAATCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG : AGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT : GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG : GCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAGCTGGAGTTGTCCTACATTGCTAAAAGTATTAAATT</gDNA_template>
            <first_frame> P  V  F  C  S  F  L  I  F  P  *  I  K  S  P  Q  P  P  *  A  L  C  F  L  R  R  N  S  F  F  S  L  F  T  E  N  I  F  I  V  V  R  V  I  *  I  I  I  L  I  C  I  F  S  S  F  V  R  I  K  K  L  I  F  F  V  G  F  T  R  W  L  L  L  Y  K  E  L  V  L  L  L  H  *  H  Q  P  I  L  W  I  P  R  S  H  F  S  L  I  L  A  D  L  C  Q  :  R  G  K  E  G  Y  L  W  L  D  L  M  G  V  *  A  V  V  *  M  D  V  E  E  E  L  N  N  *  S  L  M  L  L  L :   Q  K  K  M  L  L  Q  L  L  L  H  S  S  Q   : G  M  N  C  C  S  L  R  P  S  A  K  A  W  K  K  R  W  T  E  I  P  L  F  V  *  W  V  K  M  S  V  I  T  E  V  R  T  R  *  L  K  A  L  P  Q  N  M  V  I  S  G  F  L  I  L  L  L  L  R  T  L  S  L  V  W  A  L  E  L  Q  *  L  A  C  V  Q  L  L  R  E  *  T  W  D  F  F  F  W  P  S  T  R  Y  L  T  T  A  V  C  S  T  T  H  L  V  A  S  L  R  Y  Q  L  S  S  E  V  L  V  E  L  V  D  S  L  E  Q  S  T  L  N  A  L  S  H  T  S  S  Q  F  L  E  S  R  W  S  P  V  Q  P  P  T  M  L  R  A  *  *  R  Q  L  S  K  V  I  T  L  *  F  C  L  S  M  F  C  S  T  T  S  R  K  E  F  Q  M  K  S  M  C  *  I  L  K  K  Q  R  W  Y  D  L  G  S  M  *  P  F  *  L  I  P  G  *  G  I  M  *  C  R  L  P  R  H  L  *  T  R  V  M  I  P  R  S  L  I  L  G  L  *  N  H  L  I  F  T  P  S  G  S  Q  *  K  R  L  I  V  C  S  L  S  R  N  A  C  A  Q  E  V  L  G  P  A  *  Q  P  L  *  L  R  T  F  T  T  I  *  M  P  Q  S  Y  V  C  R  H  R  M  C  Q  P  L  M  L  G  R  *  R  I  G  L  L  S  N  L  P  R  L  L  L  Q  L  N  N  F  A  S  D  Q  V  V  E  V  L  *  *  S  C  H  Y  V  Q  L  L  M  S  *  F  K  A  Q  L  L  I  D  F  Y  C  L  I  L  L  E  I  L  F  F  G  T  W  E  S  *  L  R  *  D  V  C  C  F  A  F  Y  P  H  Q  N  G  A  W  N  R  Y  V  L  V  R  *  L  D  F  I  E  T  L  S  L  F  C  F  V  K  D  K  D  L  G  L  F  Y  N  Q  S  W  S  C  P  T  L  L  K  V  L  N  </first_frame>
            <second_frame>  L  S  F  A  L  F  *  S  F  L  R  L  N  R  H  N  L  L  E  H  F  V  F  F  A  A  T  H  F  F  L  Y  S  L  R  I  Y  L  *  L  *  G  S  F  E  S  S  F  *  S  A  F  S  L  R  L  F  E  S  R  S  *  F  S  L  W  G  L  L  D  G  C  Y  Y  T  R  N  W  C  C  Y  C  T  N  I  S  Q  F  F  G  Y  Q  E  V  T  F  R  *  F  S  Q  I  F  V  R :   E  E  R  K  V  I  C  G  *  I  *  W  A  F  K  Q  W  F  E  W  T  W  R  K  S  *  T  I  N  H  *  C  C  C   : C  K  R  R  C  C  C  S  F  Y  F  I  Q  A  R  :  A  *  T  V  A  L  *  G  P  P  R  R  P  G  R  R  D  G  Q  R  S  H  C  L  C  N  G  *  R  C  R  S  L  R  R  F  V  Q  G  D  *  R  P  C  P  K  I  W  *  S  Q  G  S  *  Y  S  Y  C  *  E  L  F  H  W  Y  G  H  W  S  C  N  D  W  L  A  S  S  Y  *  G  N  E  H  G  I  S  S  S  G  L  Q  P  D  I  *  Q  L  R  Y  A  P  L  H  I  W  W  P  V  *  D  T  S  C  H  P  R  S  W  W  S  W  S  T  A  W  S  R  A  L  S  T  P  *  V  I  L  P  V  N  S  W  N  P  D  G  R  L  F  N  P  L  Q  C  *  G  L  D  E  G  S  Y  Q  K  *  *  P  C  D  S  V  *  A  C  F  A  L  Q  P  Q  G  K  N  S  R  *  R  V  C  A  E  S  *  R  S  R  D  G  T  T  W  G  A  C  N  H  S  N  L  F  Q  D  E  V  S  C  N  A  G  C  Q  D  T  C  E  Q  G  L  *  S  R  G  H  *  Y  *  V  S  E  T  I  *  S  L  H  H  R  E  V  S  E  K  D  S  S  C  A  H  C  R  G  M  H  A  H  R  R  Y  W  G  Q  L  D  S  R  Y  N  *  E  L  S  R  L  S  R  C  P  N  R  M  S  V  V  T  G  C  A  N  P  L  C  W  D  V  R  E  L  D  C  C  P  T  S  P  D  C  Y  C  S  *  T  T  L  P  V  I  K  W  *  K  F  Y  D  N  H  A  I  M  F  S  C  L  C  H  N  L  R  L  N  F  *  S  I  F  I  V  *  F  C  *  R  F  Y  F  L  E  L  G  S  P  S  *  G  E  M  F  V  V  L  P  S  T  H  T  K  M  V  L  G  I  V  M  Y  W  *  G  N  *  T  S  *  K  H  Y  H  C  F  V  S  L  K  I  K  I  *  V  Y  F  I  I  K  A  G  V  V  L  H  C  *  K  Y  *  I </second_frame>
            <third_frame>   C  L  L  L  F  S  N  L  S  L  D  *  I  A  T  T  S  L  S  T  L  F  S  S  P  Q  L  I  F  F  S  I  H  *  E  Y  I  Y  S  C  K  G  H  L  N  H  H  S  D  L  H  F  L  F  V  C  S  N  Q  E  A  N  F  L  C  G  V  Y  *  M  A  A  I  I  Q  G  I  G  A  A  T  A  L  T  S  A  N  S  L  D  T  K  K  S  L  F  A  N  S  R  R  S  L  S   : E  R  K  G  R  L  F  V  A  R  S  D  G  R  L  S  S  G  L  N  G  R  G  G  R  A  E  Q  L  I  T  N  A  V  A  :  A  K  E  D  A  A  A  A  S  T  S  F  K  P  G :   H  E  L  L  L  F  E  A  L  R  E  G  L  E  E  E  M  D  R  D  P  T  V  C  V  M  G  E  D  V  G  H  Y  G  G  S  Y  K  V  T  K  G  L  A  P  K  Y  G  D  L  R  V  L  D  T  P  I  A  E  N  S  F  T  G  M  G  I  G  A  A  M  T  G  L  R  P  V  I  E  G  M  N  M  G  F  L  L  L  A  F  N  Q  I  S  N  N  C  G  M  L  H  Y  T  S  G  G  Q  F  K  I  P  V  V  I  R  G  P  G  G  V  G  R  Q  L  G  A  E  H  S  Q  R  L  E  S  Y  F  Q  S  I  P  G  I  Q  M  V  A  C  S  T  P  Y  N  A  K  G  L  M  K  A  A  I  K  S  D  N  P  V  I  L  F  E  H  V  L  L  Y  N  L  K  E  R  I  P  D  E  E  Y  V  L  N  L  E  E  A  E  M  V  R  P  G  E  H  V  T  I  L  T  Y  S  R  M  R  Y  H  V  M  Q  A  A  K  T  L  V  N  K  G  Y  D  P  E  V  I  D  I  R  S  L  K  P  F  D  L  Y  T  I  G  K  S  V  K  K  T  H  R  V  L  I  V  E  E  C  M  R  T  G  G  I  G  A  S  L  T  A  A  I  T  E  N  F  H  D  Y  L  D  A  P  I  V  C  L  S  S  Q  D  V  P  T  P  Y  A  G  T  L  E  N  W  T  V  V  Q  P  P  Q  I  V  T  A  V  E  Q  L  C  Q  *  S  S  G  R  S  F  M  I  I  M  P  L  C  S  V  A  Y  V  I  I  *  G  S  T  S  D  R  F  L  L  S  D  F  A  R  D  F  I  F  W  N  L  G  V  L  V  K  V  R  C  L  L  F  C  L  L  P  T  P  K  W  C  L  E  S  L  C  T  G  K  V  T  R  L  H  R  N  I  I  I  V  L  F  R  *  R  *  R  F  R  S  I  L  *  S  K  L  E  L  S  Y  I  A  K  S  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0198I15.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37985" stop="37880"/>
                    <exon start="37625" stop="37522"/>
                    <exon start="37386" stop="37343"/>
                    <exon start="30005" stop="29033"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1224</number_coding_nucleotides>
                  <number_encoded_amino_acids>408</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAAIIQGIGAATALTSANSLDTKKSLFANSRRSLSERKGRLFVARSDGRLSSGLNGRGGRAEQLITNAVAAKEDAAAASTSFKPGHELLLFEALREGLEEEMDRDPTVCVMGEDVGHYGGSYKVTKGLAPKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIKSDNPVILFEHVLLYNLKERIPDEEYVLNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGKSVKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLENWTVVQPPQIVTAVEQLCQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38065" e_stop="37880"/>
            <exon e_start="37636" e_stop="37522"/>
            <exon e_start="37386" e_stop="37343"/>
            <exon e_start="30005" e_stop="28710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="0.910"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.904"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="38065" e_stop="37880" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37879" i_stop="37637" i_length="243"/>
          </intron>
          <exon e_serial="2" e_score="0.904">
            <gDNA_exon_boundary e_start="37636" e_stop="37522" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37386" e_stop="37343" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337"/>
          </intron>
          <exon e_serial="4" e_score="0.937">
            <gDNA_exon_boundary e_start="30005" e_stop="28710" e_length="1296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38065" stop="37880"/>
              <exon start="37636" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38045" stop="37880"/>
              <exon start="37636" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38009" stop="37880"/>
              <exon start="37636" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38008" stop="37880"/>
              <exon start="37636" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37635" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37524" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30005" stop="29304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29994" stop="29433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29955" stop="29101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29955" stop="29176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29809" stop="29157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29798" stop="29131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29440" stop="28738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29440" stop="28739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29439" stop="28910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29357" stop="28829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29256" stop="28710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29250" stop="28739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG : TTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT : GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG : GCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAGCTGGAGTTGTCCTACATTGCTAAAAGTATTAAATT</gDNA_template>
            <first_frame> I  *  I  I  I  L  I  C  I  F  S  S  F  V  R  I  K  K  L  I  F  F  V  G  F  T  R  W  L  L  L  Y  K  E  L  V  L  L  L  H  *  H  Q  P  I  L  W  I  P  R  S  H  F  S  L  I  L  A  D  L  C  Q  :  L  V  C  R  E  E  R  K  V  I  C  G  *  I  *  W  A  F  K  Q  W  F  E  W  T  W  R  K  S  *  T  I  N  H  *  C  C  C   : C  K  R  R  C  C  C  S  F  Y  F  I  Q  A  R  :  A  *  T  V  A  L  *  G  P  P  R  R  P  G  R  R  D  G  Q  R  S  H  C  L  C  N  G  *  R  C  R  S  L  R  R  F  V  Q  G  D  *  R  P  C  P  K  I  W  *  S  Q  G  S  *  Y  S  Y  C  *  E  L  F  H  W  Y  G  H  W  S  C  N  D  W  L  A  S  S  Y  *  G  N  E  H  G  I  S  S  S  G  L  Q  P  D  I  *  Q  L  R  Y  A  P  L  H  I  W  W  P  V  *  D  T  S  C  H  P  R  S  W  W  S  W  S  T  A  W  S  R  A  L  S  T  P  *  V  I  L  P  V  N  S  W  N  P  D  G  R  L  F  N  P  L  Q  C  *  G  L  D  E  G  S  Y  Q  K  *  *  P  C  D  S  V  *  A  C  F  A  L  Q  P  Q  G  K  N  S  R  *  R  V  C  A  E  S  *  R  S  R  D  G  T  T  W  G  A  C  N  H  S  N  L  F  Q  D  E  V  S  C  N  A  G  C  Q  D  T  C  E  Q  G  L  *  S  R  G  H  *  Y  *  V  S  E  T  I  *  S  L  H  H  R  E  V  S  E  K  D  S  S  C  A  H  C  R  G  M  H  A  H  R  R  Y  W  G  Q  L  D  S  R  Y  N  *  E  L  S  R  L  S  R  C  P  N  R  M  S  V  V  T  G  C  A  N  P  L  C  W  D  V  R  E  L  D  C  C  P  T  S  P  D  C  Y  C  S  *  T  T  L  P  V  I  K  W  *  K  F  Y  D  N  H  A  I  M  F  S  C  L  C  H  N  L  R  L  N  F  *  S  I  F  I  V  *  F  C  *  R  F  Y  F  L  E  L  G  S  P  S  *  G  E  M  F  V  V  L  P  S  T  H  T  K  M  V  L  G  I  V  M  Y  W  *  G  N  *  T  S  *  K  H  Y  H  C  F  V  S  L  K  I  K  I  *  V  Y  F  I  I  K  A  G  V  V  L  H  C  *  K  Y  *  I </first_frame>
            <second_frame>  F  E  S  S  F  *  S  A  F  S  L  R  L  F  E  S  R  S  *  F  S  L  W  G  L  L  D  G  C  Y  Y  T  R  N  W  C  C  Y  C  T  N  I  S  Q  F  F  G  Y  Q  E  V  T  F  R  *  F  S  Q  I  F  V  S :   W  F  A  E  R  K  G  R  L  F  V  A  R  S  D  G  R  L  S  S  G  L  N  G  R  G  G  R  A  E  Q  L  I  T  N  A  V  A  :  A  K  E  D  A  A  A  A  S  T  S  F  K  P  G :   H  E  L  L  L  F  E  A  L  R  E  G  L  E  E  E  M  D  R  D  P  T  V  C  V  M  G  E  D  V  G  H  Y  G  G  S  Y  K  V  T  K  G  L  A  P  K  Y  G  D  L  R  V  L  D  T  P  I  A  E  N  S  F  T  G  M  G  I  G  A  A  M  T  G  L  R  P  V  I  E  G  M  N  M  G  F  L  L  L  A  F  N  Q  I  S  N  N  C  G  M  L  H  Y  T  S  G  G  Q  F  K  I  P  V  V  I  R  G  P  G  G  V  G  R  Q  L  G  A  E  H  S  Q  R  L  E  S  Y  F  Q  S  I  P  G  I  Q  M  V  A  C  S  T  P  Y  N  A  K  G  L  M  K  A  A  I  K  S  D  N  P  V  I  L  F  E  H  V  L  L  Y  N  L  K  E  R  I  P  D  E  E  Y  V  L  N  L  E  E  A  E  M  V  R  P  G  E  H  V  T  I  L  T  Y  S  R  M  R  Y  H  V  M  Q  A  A  K  T  L  V  N  K  G  Y  D  P  E  V  I  D  I  R  S  L  K  P  F  D  L  Y  T  I  G  K  S  V  K  K  T  H  R  V  L  I  V  E  E  C  M  R  T  G  G  I  G  A  S  L  T  A  A  I  T  E  N  F  H  D  Y  L  D  A  P  I  V  C  L  S  S  Q  D  V  P  T  P  Y  A  G  T  L  E  N  W  T  V  V  Q  P  P  Q  I  V  T  A  V  E  Q  L  C  Q  *  S  S  G  R  S  F  M  I  I  M  P  L  C  S  V  A  Y  V  I  I  *  G  S  T  S  D  R  F  L  L  S  D  F  A  R  D  F  I  F  W  N  L  G  V  L  V  K  V  R  C  L  L  F  C  L  L  P  T  P  K  W  C  L  E  S  L  C  T  G  K  V  T  R  L  H  R  N  I  I  I  V  L  F  R  *  R  *  R  F  R  S  I  L  *  S  K  L  E  L  S  Y  I  A  K  S  I  K   </second_frame>
            <third_frame>   L  N  H  H  S  D  L  H  F  L  F  V  C  S  N  Q  E  A  N  F  L  C  G  V  Y  *  M  A  A  I  I  Q  G  I  G  A  A  T  A  L  T  S  A  N  S  L  D  T  K  K  S  L  F  A  N  S  R  R  S  L  S   : V  G  L  Q  R  G  K  E  G  Y  L  W  L  D  L  M  G  V  *  A  V  V  *  M  D  V  E  E  E  L  N  N  *  S  L  M  L  L  L :   Q  K  K  M  L  L  Q  L  L  L  H  S  S  Q   : G  M  N  C  C  S  L  R  P  S  A  K  A  W  K  K  R  W  T  E  I  P  L  F  V  *  W  V  K  M  S  V  I  T  E  V  R  T  R  *  L  K  A  L  P  Q  N  M  V  I  S  G  F  L  I  L  L  L  L  R  T  L  S  L  V  W  A  L  E  L  Q  *  L  A  C  V  Q  L  L  R  E  *  T  W  D  F  F  F  W  P  S  T  R  Y  L  T  T  A  V  C  S  T  T  H  L  V  A  S  L  R  Y  Q  L  S  S  E  V  L  V  E  L  V  D  S  L  E  Q  S  T  L  N  A  L  S  H  T  S  S  Q  F  L  E  S  R  W  S  P  V  Q  P  P  T  M  L  R  A  *  *  R  Q  L  S  K  V  I  T  L  *  F  C  L  S  M  F  C  S  T  T  S  R  K  E  F  Q  M  K  S  M  C  *  I  L  K  K  Q  R  W  Y  D  L  G  S  M  *  P  F  *  L  I  P  G  *  G  I  M  *  C  R  L  P  R  H  L  *  T  R  V  M  I  P  R  S  L  I  L  G  L  *  N  H  L  I  F  T  P  S  G  S  Q  *  K  R  L  I  V  C  S  L  S  R  N  A  C  A  Q  E  V  L  G  P  A  *  Q  P  L  *  L  R  T  F  T  T  I  *  M  P  Q  S  Y  V  C  R  H  R  M  C  Q  P  L  M  L  G  R  *  R  I  G  L  L  S  N  L  P  R  L  L  L  Q  L  N  N  F  A  S  D  Q  V  V  E  V  L  *  *  S  C  H  Y  V  Q  L  L  M  S  *  F  K  A  Q  L  L  I  D  F  Y  C  L  I  L  L  E  I  L  F  F  G  T  W  E  S  *  L  R  *  D  V  C  C  F  A  F  Y  P  H  Q  N  G  A  W  N  R  Y  V  L  V  R  *  L  D  F  I  E  T  L  S  L  F  C  F  V  K  D  K  D  L  G  L  F  Y  N  Q  S  W  S  C  P  T  L  L  K  V  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0198I15.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37899" stop="37880"/>
                    <exon start="37636" stop="37522"/>
                    <exon start="37386" stop="37343"/>
                    <exon start="30005" stop="29033"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1149</number_coding_nucleotides>
                  <number_encoded_amino_acids>383</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSQIFVSWFAERKGRLFVARSDGRLSSGLNGRGGRAEQLITNAVAAKEDAAAASTSFKPGHELLLFEALREGLEEEMDRDPTVCVMGEDVGHYGGSYKVTKGLAPKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIKSDNPVILFEHVLLYNLKERIPDEEYVLNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGKSVKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLENWTVVQPPQIVTAVEQLCQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="38194" e_stop="37880"/>
            <exon e_start="37625" e_stop="37522"/>
            <exon e_start="37386" e_stop="37343"/>
            <exon e_start="30005" e_stop="29037"/>
            <exon e_start="28941" e_stop="28854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.307" acc_prob="0.000" e_score="0.937"/>
          <exon-only e_score="0.739"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38194" e_stop="37880" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37625" e_stop="37522" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37386" e_stop="37343" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337"/>
          </intron>
          <exon e_serial="4" e_score="0.937">
            <gDNA_exon_boundary e_start="30005" e_stop="29037" e_length="969"/>
          </exon>
          <intron i_serial="4" don_prob="0.307" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29036" i_stop="28942" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="0.739">
            <gDNA_exon_boundary e_start="28941" e_stop="28854" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38194" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38191" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38183" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38183" stop="37880"/>
              <exon start="37625" stop="37529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38175" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38172" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38165" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37524" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30005" stop="29304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29994" stop="29433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29955" stop="29101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29955" stop="29176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29809" stop="29157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29798" stop="29131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29667" stop="29037"/>
              <exon start="28941" stop="28854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGTCTTTTGCTCTTTTCTAATCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG : AGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT : GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG : GCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCA : CTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAA</gDNA_template>
            <first_frame> P  V  F  C  S  F  L  I  F  P  *  I  K  S  P  Q  P  P  *  A  L  C  F  L  R  R  N  S  F  F  S  L  F  T  E  N  I  F  I  V  V  R  V  I  *  I  I  I  L  I  C  I  F  S  S  F  V  R  I  K  K  L  I  F  F  V  G  F  T  R  W  L  L  L  Y  K  E  L  V  L  L  L  H  *  H  Q  P  I  L  W  I  P  R  S  H  F  S  L  I  L  A  D  L  C  Q  :  R  G  K  E  G  Y  L  W  L  D  L  M  G  V  *  A  V  V  *  M  D  V  E  E  E  L  N  N  *  S  L  M  L  L  L :   Q  K  K  M  L  L  Q  L  L  L  H  S  S  Q   : G  M  N  C  C  S  L  R  P  S  A  K  A  W  K  K  R  W  T  E  I  P  L  F  V  *  W  V  K  M  S  V  I  T  E  V  R  T  R  *  L  K  A  L  P  Q  N  M  V  I  S  G  F  L  I  L  L  L  L  R  T  L  S  L  V  W  A  L  E  L  Q  *  L  A  C  V  Q  L  L  R  E  *  T  W  D  F  F  F  W  P  S  T  R  Y  L  T  T  A  V  C  S  T  T  H  L  V  A  S  L  R  Y  Q  L  S  S  E  V  L  V  E  L  V  D  S  L  E  Q  S  T  L  N  A  L  S  H  T  S  S  Q  F  L  E  S  R  W  S  P  V  Q  P  P  T  M  L  R  A  *  *  R  Q  L  S  K  V  I  T  L  *  F  C  L  S  M  F  C  S  T  T  S  R  K  E  F  Q  M  K  S  M  C  *  I  L  K  K  Q  R  W  Y  D  L  G  S  M  *  P  F  *  L  I  P  G  *  G  I  M  *  C  R  L  P  R  H  L  *  T  R  V  M  I  P  R  S  L  I  L  G  L  *  N  H  L  I  F  T  P  S  G  S  Q  *  K  R  L  I  V  C  S  L  S  R  N  A  C  A  Q  E  V  L  G  P  A  *  Q  P  L  *  L  R  T  F  T  T  I  *  M  P  Q  S  Y  V  C  R  H  R  M  C  Q  P  L  M  L  G  R  *  R  I  G  L  L  S  N  L  P  R  L  L  L  Q  L  N  N  F  A   : T  D  F  A  R  D  F  I  F  W  N  L  G  V  L  V  K  V  R  C  L  L  F  C  L  L  P  T  P   </first_frame>
            <second_frame>  L  S  F  A  L  F  *  S  F  L  R  L  N  R  H  N  L  L  E  H  F  V  F  F  A  A  T  H  F  F  L  Y  S  L  R  I  Y  L  *  L  *  G  S  F  E  S  S  F  *  S  A  F  S  L  R  L  F  E  S  R  S  *  F  S  L  W  G  L  L  D  G  C  Y  Y  T  R  N  W  C  C  Y  C  T  N  I  S  Q  F  F  G  Y  Q  E  V  T  F  R  *  F  S  Q  I  F  V  R :   E  E  R  K  V  I  C  G  *  I  *  W  A  F  K  Q  W  F  E  W  T  W  R  K  S  *  T  I  N  H  *  C  C  C   : C  K  R  R  C  C  C  S  F  Y  F  I  Q  A  R  :  A  *  T  V  A  L  *  G  P  P  R  R  P  G  R  R  D  G  Q  R  S  H  C  L  C  N  G  *  R  C  R  S  L  R  R  F  V  Q  G  D  *  R  P  C  P  K  I  W  *  S  Q  G  S  *  Y  S  Y  C  *  E  L  F  H  W  Y  G  H  W  S  C  N  D  W  L  A  S  S  Y  *  G  N  E  H  G  I  S  S  S  G  L  Q  P  D  I  *  Q  L  R  Y  A  P  L  H  I  W  W  P  V  *  D  T  S  C  H  P  R  S  W  W  S  W  S  T  A  W  S  R  A  L  S  T  P  *  V  I  L  P  V  N  S  W  N  P  D  G  R  L  F  N  P  L  Q  C  *  G  L  D  E  G  S  Y  Q  K  *  *  P  C  D  S  V  *  A  C  F  A  L  Q  P  Q  G  K  N  S  R  *  R  V  C  A  E  S  *  R  S  R  D  G  T  T  W  G  A  C  N  H  S  N  L  F  Q  D  E  V  S  C  N  A  G  C  Q  D  T  C  E  Q  G  L  *  S  R  G  H  *  Y  *  V  S  E  T  I  *  S  L  H  H  R  E  V  S  E  K  D  S  S  C  A  H  C  R  G  M  H  A  H  R  R  Y  W  G  Q  L  D  S  R  Y  N  *  E  L  S  R  L  S  R  C  P  N  R  M  S  V  V  T  G  C  A  N  P  L  C  W  D  V  R  E  L  D  C  C  P  T  S  P  D  C  Y  C  S  *  T  T  L  P  :  L  I  L  L  E  I  L  F  F  G  T  W  E  S  *  L  R  *  D  V  C  C  F  A  F  Y  P  H  Q  </second_frame>
            <third_frame>   C  L  L  L  F  S  N  L  S  L  D  *  I  A  T  T  S  L  S  T  L  F  S  S  P  Q  L  I  F  F  S  I  H  *  E  Y  I  Y  S  C  K  G  H  L  N  H  H  S  D  L  H  F  L  F  V  C  S  N  Q  E  A  N  F  L  C  G  V  Y  *  M  A  A  I  I  Q  G  I  G  A  A  T  A  L  T  S  A  N  S  L  D  T  K  K  S  L  F  A  N  S  R  R  S  L  S   : E  R  K  G  R  L  F  V  A  R  S  D  G  R  L  S  S  G  L  N  G  R  G  G  R  A  E  Q  L  I  T  N  A  V  A  :  A  K  E  D  A  A  A  A  S  T  S  F  K  P  G :   H  E  L  L  L  F  E  A  L  R  E  G  L  E  E  E  M  D  R  D  P  T  V  C  V  M  G  E  D  V  G  H  Y  G  G  S  Y  K  V  T  K  G  L  A  P  K  Y  G  D  L  R  V  L  D  T  P  I  A  E  N  S  F  T  G  M  G  I  G  A  A  M  T  G  L  R  P  V  I  E  G  M  N  M  G  F  L  L  L  A  F  N  Q  I  S  N  N  C  G  M  L  H  Y  T  S  G  G  Q  F  K  I  P  V  V  I  R  G  P  G  G  V  G  R  Q  L  G  A  E  H  S  Q  R  L  E  S  Y  F  Q  S  I  P  G  I  Q  M  V  A  C  S  T  P  Y  N  A  K  G  L  M  K  A  A  I  K  S  D  N  P  V  I  L  F  E  H  V  L  L  Y  N  L  K  E  R  I  P  D  E  E  Y  V  L  N  L  E  E  A  E  M  V  R  P  G  E  H  V  T  I  L  T  Y  S  R  M  R  Y  H  V  M  Q  A  A  K  T  L  V  N  K  G  Y  D  P  E  V  I  D  I  R  S  L  K  P  F  D  L  Y  T  I  G  K  S  V  K  K  T  H  R  V  L  I  V  E  E  C  M  R  T  G  G  I  G  A  S  L  T  A  A  I  T  E  N  F  H  D  Y  L  D  A  P  I  V  C  L  S  S  Q  D  V  P  T  P  Y  A  G  T  L  E  N  W  T  V  V  Q  P  P  Q  I  V  T  A  V  E  Q  L  C  H :   *  F  C  *  R  F  Y  F  L  E  L  G  S  P  S  *  G  E  M  F  V  V  L  P  S  T  H  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0198I15.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37985" stop="37880"/>
                    <exon start="37625" stop="37522"/>
                    <exon start="37386" stop="37343"/>
                    <exon start="30005" stop="29037"/>
                    <exon start="28941" stop="28938"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1224</number_coding_nucleotides>
                  <number_encoded_amino_acids>408</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAAIIQGIGAATALTSANSLDTKKSLFANSRRSLSERKGRLFVARSDGRLSSGLNGRGGRAEQLITNAVAAKEDAAAASTSFKPGHELLLFEALREGLEEEMDRDPTVCVMGEDVGHYGGSYKVTKGLAPKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIKSDNPVILFEHVLLYNLKERIPDEEYVLNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGKSVKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLENWTVVQPPQIVTAVEQLCH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="38138" e_stop="38075"/>
            <exon e_start="37985" e_stop="37880"/>
            <exon e_start="37625" e_stop="37522"/>
            <exon e_start="37386" e_stop="37343"/>
            <exon e_start="30005" e_stop="28710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38138" e_stop="38075" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38074" i_stop="37986" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37985" e_stop="37880" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37625" e_stop="37522" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37386" e_stop="37343" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337"/>
          </intron>
          <exon e_serial="5" e_score="0.937">
            <gDNA_exon_boundary e_start="30005" e_stop="28710" e_length="1296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38138" stop="38075"/>
              <exon start="37985" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38130" stop="38075"/>
              <exon start="37985" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37524" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30005" stop="29304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29994" stop="29433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29955" stop="29101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29955" stop="29176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29809" stop="29157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29798" stop="29131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29440" stop="28738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29440" stop="28739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29439" stop="28910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29357" stop="28829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29256" stop="28710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29250" stop="28739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTT : ATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG : AGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT : GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG : GCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAGCTGGAGTTGTCCTACATTGCTAAAAGTATTAAATT</gDNA_template>
            <first_frame> S  T  L  F  S  S  P  Q  L  I  F  F  S  I  H  *  E  Y  I  Y  S   : Y  G  C  Y  Y  T  R  N  W  C  C  Y  C  T  N  I  S  Q  F  F  G  Y  Q  E  V  T  F  R  *  F  S  Q  I  F  V  R :   E  E  R  K  V  I  C  G  *  I  *  W  A  F  K  Q  W  F  E  W  T  W  R  K  S  *  T  I  N  H  *  C  C  C   : C  K  R  R  C  C  C  S  F  Y  F  I  Q  A  R  :  A  *  T  V  A  L  *  G  P  P  R  R  P  G  R  R  D  G  Q  R  S  H  C  L  C  N  G  *  R  C  R  S  L  R  R  F  V  Q  G  D  *  R  P  C  P  K  I  W  *  S  Q  G  S  *  Y  S  Y  C  *  E  L  F  H  W  Y  G  H  W  S  C  N  D  W  L  A  S  S  Y  *  G  N  E  H  G  I  S  S  S  G  L  Q  P  D  I  *  Q  L  R  Y  A  P  L  H  I  W  W  P  V  *  D  T  S  C  H  P  R  S  W  W  S  W  S  T  A  W  S  R  A  L  S  T  P  *  V  I  L  P  V  N  S  W  N  P  D  G  R  L  F  N  P  L  Q  C  *  G  L  D  E  G  S  Y  Q  K  *  *  P  C  D  S  V  *  A  C  F  A  L  Q  P  Q  G  K  N  S  R  *  R  V  C  A  E  S  *  R  S  R  D  G  T  T  W  G  A  C  N  H  S  N  L  F  Q  D  E  V  S  C  N  A  G  C  Q  D  T  C  E  Q  G  L  *  S  R  G  H  *  Y  *  V  S  E  T  I  *  S  L  H  H  R  E  V  S  E  K  D  S  S  C  A  H  C  R  G  M  H  A  H  R  R  Y  W  G  Q  L  D  S  R  Y  N  *  E  L  S  R  L  S  R  C  P  N  R  M  S  V  V  T  G  C  A  N  P  L  C  W  D  V  R  E  L  D  C  C  P  T  S  P  D  C  Y  C  S  *  T  T  L  P  V  I  K  W  *  K  F  Y  D  N  H  A  I  M  F  S  C  L  C  H  N  L  R  L  N  F  *  S  I  F  I  V  *  F  C  *  R  F  Y  F  L  E  L  G  S  P  S  *  G  E  M  F  V  V  L  P  S  T  H  T  K  M  V  L  G  I  V  M  Y  W  *  G  N  *  T  S  *  K  H  Y  H  C  F  V  S  L  K  I  K  I  *  V  Y  F  I  I  K  A  G  V  V  L  H  C  *  K  Y  *  I </first_frame>
            <second_frame>  A  L  C  F  L  R  R  N  S  F  F  S  L  F  T  E  N  I  F  I  V  :  M  A  A  I  I  Q  G  I  G  A  A  T  A  L  T  S  A  N  S  L  D  T  K  K  S  L  F  A  N  S  R  R  S  L  S   : E  R  K  G  R  L  F  V  A  R  S  D  G  R  L  S  S  G  L  N  G  R  G  G  R  A  E  Q  L  I  T  N  A  V  A  :  A  K  E  D  A  A  A  A  S  T  S  F  K  P  G :   H  E  L  L  L  F  E  A  L  R  E  G  L  E  E  E  M  D  R  D  P  T  V  C  V  M  G  E  D  V  G  H  Y  G  G  S  Y  K  V  T  K  G  L  A  P  K  Y  G  D  L  R  V  L  D  T  P  I  A  E  N  S  F  T  G  M  G  I  G  A  A  M  T  G  L  R  P  V  I  E  G  M  N  M  G  F  L  L  L  A  F  N  Q  I  S  N  N  C  G  M  L  H  Y  T  S  G  G  Q  F  K  I  P  V  V  I  R  G  P  G  G  V  G  R  Q  L  G  A  E  H  S  Q  R  L  E  S  Y  F  Q  S  I  P  G  I  Q  M  V  A  C  S  T  P  Y  N  A  K  G  L  M  K  A  A  I  K  S  D  N  P  V  I  L  F  E  H  V  L  L  Y  N  L  K  E  R  I  P  D  E  E  Y  V  L  N  L  E  E  A  E  M  V  R  P  G  E  H  V  T  I  L  T  Y  S  R  M  R  Y  H  V  M  Q  A  A  K  T  L  V  N  K  G  Y  D  P  E  V  I  D  I  R  S  L  K  P  F  D  L  Y  T  I  G  K  S  V  K  K  T  H  R  V  L  I  V  E  E  C  M  R  T  G  G  I  G  A  S  L  T  A  A  I  T  E  N  F  H  D  Y  L  D  A  P  I  V  C  L  S  S  Q  D  V  P  T  P  Y  A  G  T  L  E  N  W  T  V  V  Q  P  P  Q  I  V  T  A  V  E  Q  L  C  Q  *  S  S  G  R  S  F  M  I  I  M  P  L  C  S  V  A  Y  V  I  I  *  G  S  T  S  D  R  F  L  L  S  D  F  A  R  D  F  I  F  W  N  L  G  V  L  V  K  V  R  C  L  L  F  C  L  L  P  T  P  K  W  C  L  E  S  L  C  T  G  K  V  T  R  L  H  R  N  I  I  I  V  L  F  R  *  R  *  R  F  R  S  I  L  *  S  K  L  E  L  S  Y  I  A  K  S  I  K   </second_frame>
            <third_frame>   H  F  V  F  F  A  A  T  H  F  F  L  Y  S  L  R  I  Y  L  *  L :   W  L  L  L  Y  K  E  L  V  L  L  L  H  *  H  Q  P  I  L  W  I  P  R  S  H  F  S  L  I  L  A  D  L  C  Q  :  R  G  K  E  G  Y  L  W  L  D  L  M  G  V  *  A  V  V  *  M  D  V  E  E  E  L  N  N  *  S  L  M  L  L  L :   Q  K  K  M  L  L  Q  L  L  L  H  S  S  Q   : G  M  N  C  C  S  L  R  P  S  A  K  A  W  K  K  R  W  T  E  I  P  L  F  V  *  W  V  K  M  S  V  I  T  E  V  R  T  R  *  L  K  A  L  P  Q  N  M  V  I  S  G  F  L  I  L  L  L  L  R  T  L  S  L  V  W  A  L  E  L  Q  *  L  A  C  V  Q  L  L  R  E  *  T  W  D  F  F  F  W  P  S  T  R  Y  L  T  T  A  V  C  S  T  T  H  L  V  A  S  L  R  Y  Q  L  S  S  E  V  L  V  E  L  V  D  S  L  E  Q  S  T  L  N  A  L  S  H  T  S  S  Q  F  L  E  S  R  W  S  P  V  Q  P  P  T  M  L  R  A  *  *  R  Q  L  S  K  V  I  T  L  *  F  C  L  S  M  F  C  S  T  T  S  R  K  E  F  Q  M  K  S  M  C  *  I  L  K  K  Q  R  W  Y  D  L  G  S  M  *  P  F  *  L  I  P  G  *  G  I  M  *  C  R  L  P  R  H  L  *  T  R  V  M  I  P  R  S  L  I  L  G  L  *  N  H  L  I  F  T  P  S  G  S  Q  *  K  R  L  I  V  C  S  L  S  R  N  A  C  A  Q  E  V  L  G  P  A  *  Q  P  L  *  L  R  T  F  T  T  I  *  M  P  Q  S  Y  V  C  R  H  R  M  C  Q  P  L  M  L  G  R  *  R  I  G  L  L  S  N  L  P  R  L  L  L  Q  L  N  N  F  A  S  D  Q  V  V  E  V  L  *  *  S  C  H  Y  V  Q  L  L  M  S  *  F  K  A  Q  L  L  I  D  F  Y  C  L  I  L  L  E  I  L  F  F  G  T  W  E  S  *  L  R  *  D  V  C  C  F  A  F  Y  P  H  Q  N  G  A  W  N  R  Y  V  L  V  R  *  L  D  F  I  E  T  L  S  L  F  C  F  V  K  D  K  D  L  G  L  F  Y  N  Q  S  W  S  C  P  T  L  L  K  V  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0198I15.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38137" stop="38075"/>
                    <exon start="37985" stop="37880"/>
                    <exon start="37625" stop="37522"/>
                    <exon start="37386" stop="37343"/>
                    <exon start="30005" stop="29033"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1287</number_coding_nucleotides>
                  <number_encoded_amino_acids>429</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALCFLRRNSFFSLFTENIFIVMAAIIQGIGAATALTSANSLDTKKSLFANSRRSLSERKGRLFVARSDGRLSSGLNGRGGRAEQLITNAVAAKEDAAAASTSFKPGHELLLFEALREGLEEEMDRDPTVCVMGEDVGHYGGSYKVTKGLAPKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIKSDNPVILFEHVLLYNLKERIPDEEYVLNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGKSVKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLENWTVVQPPQIVTAVEQLCQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="38110" e_stop="38012"/>
            <exon e_start="37913" e_stop="37880"/>
            <exon e_start="37625" e_stop="37522"/>
            <exon e_start="37386" e_stop="37343"/>
            <exon e_start="30005" e_stop="28710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38110" e_stop="38012" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38011" i_stop="37914" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37913" e_stop="37880" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37625" e_stop="37522" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37386" e_stop="37343" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337"/>
          </intron>
          <exon e_serial="5" e_score="0.937">
            <gDNA_exon_boundary e_start="30005" e_stop="28710" e_length="1296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38110" stop="38012"/>
              <exon start="37913" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37524" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="29504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30005" stop="29304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29994" stop="29433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29955" stop="29101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29955" stop="29176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29809" stop="29157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29798" stop="29131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29766" stop="29264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29440" stop="28738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29440" stop="28739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29439" stop="28910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29357" stop="28829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29256" stop="28710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29250" stop="28739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAG : TCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG : AGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT : GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG : GCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAGCTGGAGTTGTCCTACATTGCTAAAAGTATTAAATT</gDNA_template>
            <first_frame> F  F  S  L  F  T  E  N  I  F  I  V  V  R  V  I  *  I  I  I  L  I  C  I  F  S  S  F  V  R  I  K  K  :  S  L  F  A  N  S  R  R  S  L  S   : E  R  K  G  R  L  F  V  A  R  S  D  G  R  L  S  S  G  L  N  G  R  G  G  R  A  E  Q  L  I  T  N  A  V  A  :  A  K  E  D  A  A  A  A  S  T  S  F  K  P  G :   H  E  L  L  L  F  E  A  L  R  E  G  L  E  E  E  M  D  R  D  P  T  V  C  V  M  G  E  D  V  G  H  Y  G  G  S  Y  K  V  T  K  G  L  A  P  K  Y  G  D  L  R  V  L  D  T  P  I  A  E  N  S  F  T  G  M  G  I  G  A  A  M  T  G  L  R  P  V  I  E  G  M  N  M  G  F  L  L  L  A  F  N  Q  I  S  N  N  C  G  M  L  H  Y  T  S  G  G  Q  F  K  I  P  V  V  I  R  G  P  G  G  V  G  R  Q  L  G  A  E  H  S  Q  R  L  E  S  Y  F  Q  S  I  P  G  I  Q  M  V  A  C  S  T  P  Y  N  A  K  G  L  M  K  A  A  I  K  S  D  N  P  V  I  L  F  E  H  V  L  L  Y  N  L  K  E  R  I  P  D  E  E  Y  V  L  N  L  E  E  A  E  M  V  R  P  G  E  H  V  T  I  L  T  Y  S  R  M  R  Y  H  V  M  Q  A  A  K  T  L  V  N  K  G  Y  D  P  E  V  I  D  I  R  S  L  K  P  F  D  L  Y  T  I  G  K  S  V  K  K  T  H  R  V  L  I  V  E  E  C  M  R  T  G  G  I  G  A  S  L  T  A  A  I  T  E  N  F  H  D  Y  L  D  A  P  I  V  C  L  S  S  Q  D  V  P  T  P  Y  A  G  T  L  E  N  W  T  V  V  Q  P  P  Q  I  V  T  A  V  E  Q  L  C  Q  *  S  S  G  R  S  F  M  I  I  M  P  L  C  S  V  A  Y  V  I  I  *  G  S  T  S  D  R  F  L  L  S  D  F  A  R  D  F  I  F  W  N  L  G  V  L  V  K  V  R  C  L  L  F  C  L  L  P  T  P  K  W  C  L  E  S  L  C  T  G  K  V  T  R  L  H  R  N  I  I  I  V  L  F  R  *  R  *  R  F  R  S  I  L  *  S  K  L  E  L  S  Y  I  A  K  S  I  K   </first_frame>
            <second_frame>  F  F  L  Y  S  L  R  I  Y  L  *  L  *  G  S  F  E  S  S  F  *  S  A  F  S  L  R  L  F  E  S  R  S :   H  F  S  L  I  L  A  D  L  C  Q  :  R  G  K  E  G  Y  L  W  L  D  L  M  G  V  *  A  V  V  *  M  D  V  E  E  E  L  N  N  *  S  L  M  L  L  L :   Q  K  K  M  L  L  Q  L  L  L  H  S  S  Q   : G  M  N  C  C  S  L  R  P  S  A  K  A  W  K  K  R  W  T  E  I  P  L  F  V  *  W  V  K  M  S  V  I  T  E  V  R  T  R  *  L  K  A  L  P  Q  N  M  V  I  S  G  F  L  I  L  L  L  L  R  T  L  S  L  V  W  A  L  E  L  Q  *  L  A  C  V  Q  L  L  R  E  *  T  W  D  F  F  F  W  P  S  T  R  Y  L  T  T  A  V  C  S  T  T  H  L  V  A  S  L  R  Y  Q  L  S  S  E  V  L  V  E  L  V  D  S  L  E  Q  S  T  L  N  A  L  S  H  T  S  S  Q  F  L  E  S  R  W  S  P  V  Q  P  P  T  M  L  R  A  *  *  R  Q  L  S  K  V  I  T  L  *  F  C  L  S  M  F  C  S  T  T  S  R  K  E  F  Q  M  K  S  M  C  *  I  L  K  K  Q  R  W  Y  D  L  G  S  M  *  P  F  *  L  I  P  G  *  G  I  M  *  C  R  L  P  R  H  L  *  T  R  V  M  I  P  R  S  L  I  L  G  L  *  N  H  L  I  F  T  P  S  G  S  Q  *  K  R  L  I  V  C  S  L  S  R  N  A  C  A  Q  E  V  L  G  P  A  *  Q  P  L  *  L  R  T  F  T  T  I  *  M  P  Q  S  Y  V  C  R  H  R  M  C  Q  P  L  M  L  G  R  *  R  I  G  L  L  S  N  L  P  R  L  L  L  Q  L  N  N  F  A  S  D  Q  V  V  E  V  L  *  *  S  C  H  Y  V  Q  L  L  M  S  *  F  K  A  Q  L  L  I  D  F  Y  C  L  I  L  L  E  I  L  F  F  G  T  W  E  S  *  L  R  *  D  V  C  C  F  A  F  Y  P  H  Q  N  G  A  W  N  R  Y  V  L  V  R  *  L  D  F  I  E  T  L  S  L  F  C  F  V  K  D  K  D  L  G  L  F  Y  N  Q  S  W  S  C  P  T  L  L  K  V  L  N  </second_frame>
            <third_frame>   F  F  S  I  H  *  E  Y  I  Y  S  C  K  G  H  L  N  H  H  S  D  L  H  F  L  F  V  C  S  N  Q  E   : V  T  F  R  *  F  S  Q  I  F  V  R :   E  E  R  K  V  I  C  G  *  I  *  W  A  F  K  Q  W  F  E  W  T  W  R  K  S  *  T  I  N  H  *  C  C  C   : C  K  R  R  C  C  C  S  F  Y  F  I  Q  A  R  :  A  *  T  V  A  L  *  G  P  P  R  R  P  G  R  R  D  G  Q  R  S  H  C  L  C  N  G  *  R  C  R  S  L  R  R  F  V  Q  G  D  *  R  P  C  P  K  I  W  *  S  Q  G  S  *  Y  S  Y  C  *  E  L  F  H  W  Y  G  H  W  S  C  N  D  W  L  A  S  S  Y  *  G  N  E  H  G  I  S  S  S  G  L  Q  P  D  I  *  Q  L  R  Y  A  P  L  H  I  W  W  P  V  *  D  T  S  C  H  P  R  S  W  W  S  W  S  T  A  W  S  R  A  L  S  T  P  *  V  I  L  P  V  N  S  W  N  P  D  G  R  L  F  N  P  L  Q  C  *  G  L  D  E  G  S  Y  Q  K  *  *  P  C  D  S  V  *  A  C  F  A  L  Q  P  Q  G  K  N  S  R  *  R  V  C  A  E  S  *  R  S  R  D  G  T  T  W  G  A  C  N  H  S  N  L  F  Q  D  E  V  S  C  N  A  G  C  Q  D  T  C  E  Q  G  L  *  S  R  G  H  *  Y  *  V  S  E  T  I  *  S  L  H  H  R  E  V  S  E  K  D  S  S  C  A  H  C  R  G  M  H  A  H  R  R  Y  W  G  Q  L  D  S  R  Y  N  *  E  L  S  R  L  S  R  C  P  N  R  M  S  V  V  T  G  C  A  N  P  L  C  W  D  V  R  E  L  D  C  C  P  T  S  P  D  C  Y  C  S  *  T  T  L  P  V  I  K  W  *  K  F  Y  D  N  H  A  I  M  F  S  C  L  C  H  N  L  R  L  N  F  *  S  I  F  I  V  *  F  C  *  R  F  Y  F  L  E  L  G  S  P  S  *  G  E  M  F  V  V  L  P  S  T  H  T  K  M  V  L  G  I  V  M  Y  W  *  G  N  *  T  S  *  K  H  Y  H  C  F  V  S  L  K  I  K  I  *  V  Y  F  I  I  K  A  G  V  V  L  H  C  *  K  Y  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0198I15.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38059" stop="38012"/>
                    <exon start="37913" stop="37880"/>
                    <exon start="37625" stop="37522"/>
                    <exon start="37386" stop="37343"/>
                    <exon start="30005" stop="29033"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1200</number_coding_nucleotides>
                  <number_encoded_amino_acids>400</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIILICIFSSFVRIKKSLFANSRRSLSERKGRLFVARSDGRLSSGLNGRGGRAEQLITNAVAAKEDAAAASTSFKPGHELLLFEALREGLEEEMDRDPTVCVMGEDVGHYGGSYKVTKGLAPKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIKSDNPVILFEHVLLYNLKERIPDEEYVLNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGKSVKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLENWTVVQPPQIVTAVEQLCQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="29302" PGL_stop="29730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29302" e_stop="29730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="29302" e_stop="29730" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29302" stop="29730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280251" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATATCAATGACCTCGGGATCATAACCCTTGTTCACAAGTGTCTTGGCAGCCTGCATTACATGATACCTCATCCTGGAATAAGTTAGAATGGTTACATGCTCCCCAGGTCGTACCATCTCTGCTTCTTCAAGATTCAGCACATACTCTTCATCTGGAATTCTTTCCTTGAGGTTGTAGAGCAAAACATGCTCAAACAGAATCACAGGGTTATCACTTTTGATAGCTGCCTTCATCAAGCCCTTAGCATTGTAGGGGGTTGAACAGGCGACCATCTGGATTCCAGGAATTGACTGGAAGTATGACTCAAGGCGTTGAGAGTGCTCTGCTCCAAGCTGTCGACCAACTCCACCAGGACCTCGGATGACAACTGGTATCTTAAACTGGCCACCAGATGTGTAGTGGAGCATACCGCAGTTGTTAGATATCT</gDNA_template>
            <first_frame> *  Y  Q  *  P  R  D  H  N  P  C  S  Q  V  S  W  Q  P  A  L  H  D  T  S  S  W  N  K  L  E  W  L  H  A  P  Q  V  V  P  S  L  L  L  Q  D  S  A  H  T  L  H  L  E  F  F  P  *  G  C  R  A  K  H  A  Q  T  E  S  Q  G  Y  H  F  *  *  L  P  S  S  S  P  *  H  C  R  G  L  N  R  R  P  S  G  F  Q  E  L  T  G  S  M  T  Q  G  V  E  S  A  L  L  Q  A  V  D  Q  L  H  Q  D  L  G  *  Q  L  V  S  *  T  G  H  Q  M  C  S  G  A  Y  R  S  C  *  I  S </first_frame>
            <second_frame>  N  I  N  D  L  G  I  I  T  L  V  H  K  C  L  G  S  L  H  Y  M  I  P  H  P  G  I  S  *  N  G  Y  M  L  P  R  S  Y  H  L  C  F  F  K  I  Q  H  I  L  F  I  W  N  S  F  L  E  V  V  E  Q  N  M  L  K  Q  N  H  R  V  I  T  F  D  S  C  L  H  Q  A  L  S  I  V  G  G  *  T  G  D  H  L  D  S  R  N  *  L  E  V  *  L  K  A  L  R  V  L  C  S  K  L  S  T  N  S  T  R  T  S  D  D  N  W  Y  L  K  L  A  T  R  C  V  V  E  H  T  A  V  V  R  Y   </second_frame>
            <third_frame>   I  S  M  T  S  G  S  *  P  L  F  T  S  V  L  A  A  C  I  T  *  Y  L  I  L  E  *  V  R  M  V  T  C  S  P  G  R  T  I  S  A  S  S  R  F  S  T  Y  S  S  S  G  I  L  S  L  R  L  *  S  K  T  C  S  N  R  I  T  G  L  S  L  L  I  A  A  F  I  K  P  L  A  L  *  G  V  E  Q  A  T  I  W  I  P  G  I  D  W  K  Y  D  S  R  R  *  E  C  S  A  P  S  C  R  P  T  P  P  G  P  R  M  T  T  G  I  L  N  W  P  P  D  V  *  W  S  I  P  Q  L  L  D  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0198I15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="67918" PGL_stop="67776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67918" e_stop="67776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="67918" e_stop="67776" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67918" stop="67776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67918" stop="67776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67918" stop="67776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67918" stop="67776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATCCCTTGTTGATTATAATTGTTTATAATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAAAAATATTCTGCGAGTAAGTATGCCCAGACTATGTCATCCTAAGGTTGAAACCGGTAGGAAAGAAGA</gDNA_template>
            <first_frame> I  I  P  C  *  L  *  L  F  I  M  F  *  *  C  Y  N  N  H  L  *  K  V  C  Y  K  N  I  L  R  V  S  M  P  R  L  C  H  P  K  V  E  T  G  R  K  E   </first_frame>
            <second_frame>  *  S  L  V  D  Y  N  C  L  *  C  F  N  N  V  I  I  T  I  F  R  K  F  A  T  K  I  F  C  E  *  V  C  P  D  Y  V  I  L  R  L  K  P  V  G  K  K  </second_frame>
            <third_frame>   N  P  L  L  I  I  I  V  Y  N  V  L  I  M  L  *  *  P  S  L  E  S  L  L  Q  K  Y  S  A  S  K  Y  A  Q  T  M  S  S  *  G  *  N  R  *  E  R  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0198I15.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 103 chains have been computed
$ 
$ memory statistics:
$ 83136 bytes spliced alignments in total
$ 38 spliced alignments have been stored
$ 2187 bytes was the average size of a spliced alignment
$ 9704 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 3234 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 118 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:59:03
-->
