<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:18:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="-" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="14318" stop="13058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14018" g_stop="13358" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="-" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14018" e_stop="13358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATGTATCCTCCTAATTTTCTACTTGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTAAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCCCATGACTTTTATGGAGAGCAATACTCATGTAGTCTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAACATCGCAATCTTAGATTGCAATGCTAAAACTGTGACATTGGCCAAGCCTGAGATAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTCATTGGTGCTAAGAGAATGGTTAGAAAGGCTTGTTTAGCTTTCTGGGCACACCTCAGGGATGATACTACCCAAGTACCCTACATTGAGTCGATTCCGGTAGTCCGTGAGTTTCTGGATGTGCTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGCATTGATCTGGAGCTGGGTACTCGCCCCATTTCCATACCTCCTTATAGAATGGCTCCAGCGGAGTTAAGGGAATTACAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTGT-TCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGTGG-GAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="-" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="76636" stop="8897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76160" g_stop="75683" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76160" e_stop="75683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTTCCGACACATAGTAGTATGGGATCGGAGTGTCACGTACCGACATAAGAGGATTAATAAATA-TGAGGGATCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAACATACTCAATATAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGATAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTGTCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCTGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATATTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACCCTAGCCAGTCTTCATTACTCCGGATA-GCAGGGTGAGCTAATCCTTCTAGCTTGGATT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="-" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="76637" stop="75626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76161" g_stop="75924" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76161" e_stop="75924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGTTCCGACACATAGTAGTATGGGATCGGAGTGTCACGTACCGACATAAGAGGATTAATAAATA-TGAGGGATCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAACATACTCAATATAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGATAATTGTTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396058" ref_strand="+" ref_description="SGN-E396058 [TUS-18-N22]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtgtttccaaaaataaaatctgctactcacaacgactaaacaggtcgttacatttaggttcttcatagttaactattattattattttacgatttataacactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="76614" stop="77774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76913" g_stop="77468" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E396058" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76913" e_stop="77468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTCTCCCTCTTTCTC-TT-TGTTCTTTCTATTTTCTTATTCAAACCGTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATGAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCTTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACATGTGAAGAAATCCGACCCAGACTGGGATTATGCAACCTGTGACGGCCCGTCATGCCTGCGACGGTCCGTCTTGCAGGTCATCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCTTTGACTGTCCGTCCTGCCATTCCGTCACGAAGTTTAGAGAGTCGATTTTCAGCACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACACCCTCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAGCGACTAAATAGGTCGTTACA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGAC-TCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTGTTTCCAAAAATAAAATCTGCTACTCACAACGACTAAACAGGTCGTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231589" ref_strand="+" ref_description="SGN-E231589 [cLED-4-L18]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcatagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="76616" stop="77770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76914" g_stop="77471" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E231589" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76914" e_stop="77471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTCTCCCTCTTTCTC-TT-TGTTCTTTCTATTTTCTTATTCAAACCGTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATGAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCTTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACATGTGAAGAAATCCGACCCAGACTGGGATTATGCAACCTGTGACGGCCCGTCATGCCTGCGACGGTCCGTCTTGCAGGTCATCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCTTTGACTGTCCGTCCTGCCATTCCGTCACGAAGTTTAGAGAGTCGATTTTCAGCACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACACCCTCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAGCGACTAAATAGGTCGTTACAATA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCATAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGAC-TCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241959" ref_strand="+" ref_description="SGN-E241959 [cLED-27-I11]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="76616" stop="77758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76914" g_stop="77458" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E241959" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76914" e_stop="77458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTCTCCCTCTTTCTC-TT-TGTTCTTTCTATTTTCTTATTCAAACCGTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATGAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCTTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACATGTGAAGAAATCCGACCCAGACTGGGATTATGCAACCTGTGACGGCCCGTCATGCCTGCGACGGTCCGTCTTGCAGGTCATCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCTTTGACTGTCCGTCCTGCCATTCCGTCACGAAGTTTAGAGAGTCGATTTTCAGCACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACACCCTCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAGCGACTAAATA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGAC-TCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="76616" stop="77685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76914" g_stop="77385" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76914" e_stop="77385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTCTCCCTCTTTCTC-TT-TGTTCTTTCTATTTTCTTATTCAAACCGTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATGAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCTTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACATGTGAAGAAATCCGACCCAGACTGGGATTATGCAACCTGTGACGGCCCGTCATGCCTGCGACGGTCCGTCTTGCAGGTCATCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCTTTGACTGTCCGTCCTGCCATTCCGTCACGAAGTTTAGAGAGTCGATTTTCAGCACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACACCCTCGACGGTCCGTCGTGCCCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGAC-TCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="77825" stop="78602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78125" g_stop="78301" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78125" e_stop="78301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCATACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="79306" stop="80617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79606" g_stop="80318" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79606" e_stop="80318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGTTCCTTATTTTAGACACATTAGTAGTTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAGTAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTTTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCAAATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATTATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCTATCCTTCTTCTTCACAAACAAAACCGAAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGA</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="79306" stop="80501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79606" g_stop="80201" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79606" e_stop="80201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGTTCCTTATTTTAGACACATTAGTAGTTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAGTAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTTTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCAAATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATTATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="79306" stop="80431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79606" g_stop="80131" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79606" e_stop="80131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGTTCCTTATTTTAGACACATTAGTAGTTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAGTAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTTTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCAAATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATTATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="79378" stop="80655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79677" g_stop="80356" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79677" e_stop="80356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAGTAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTTTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCAAATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATTATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCTATCCTTCTTCTTCACAAACAAAACCGAAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGAGAGCCATTCTATAAGGGGGTATAGAAAAGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="79378" stop="80335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79677" g_stop="80035" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79677" e_stop="80035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAGTAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTTTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="79826" stop="81083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80126" g_stop="80783" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80126" e_stop="80783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCTATCCTTCTTCTTCACAAACAAAACCGAAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGAGAGCCATTCTATAAGGGGGTATAGAAAAGGGGCGAGTACCCGATTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACAGGGAAGATCTGCAGGGAACACATCAAAAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTTAGATGTGTCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTTAAGATAACCAAGTCTACATAAGTATTGTTCCCCACGAAATTCACCAAACAAGACCTATATATCCTTTCAACTATTAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAAAAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="-" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="81921" stop="79914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81621" g_stop="81449" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81448" i_stop="80706" i_length="743">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80705" g_stop="80178" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81621" e_stop="81449"/>
          <exon e_start="80705" e_stop="80178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCATTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGATGTGGTAGACTTCGTGATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCGCCATGACAACTACATCAAAAAGGTTCCGAAACGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCAGAGGTTATGCAGTTTGATCCATTTAGTCTTCACTACAGACTGTAATTATAGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGCTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGCTGGTCGAGGTAATGGTGGTCACCCAAACGGCCTGGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAAACAAACGAAAGGGCCTATTGTTATGCTTTCCCTGGGTGGTCAGAAGCGGAGACATCAGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGATTCTGTATTGTTTGATCCTGGATCCACATTTTCATATGTATCTTCCGCATTTGCTAATAGTCTTGATTTACATTGTGAATAGCTTGACATACCTATTCATGTGTCTACTCTGGTGGGTGAGTCTGTAATAGTTGAAAGGATATATAGGTCTTGTTTGGTGAATTTCGTGGGGAACAATACTTATGTAGACTTGGTTATCTTAAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGACACATCTAAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTTTTGATGTGTTCCCTGCAGATCTTCCCTGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAATCGGGTACTCGCCCCTTTTCTATACCCCCTTATAGAATGGCTCTCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTTCGGTTTTGTTTGTGAAGAAGAAGGATAGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAGATCG---GCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="79895" stop="81255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80195" g_stop="80955" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80195" e_stop="80955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCTATCCTTCTTCTTCACAAACAAAACCGAAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGAGAGCCATTCTATAAGGGGGTATAGAAAAGGGGCGAGTACCCGATTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACAGGGAAGATCTGCAGGGAACACATCAAAAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTTAGATGTGTCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTT-TAAGATAACCAAGTCTACATAAGTATTGTTCCCCACGAAATTCACCAAACAAGACCTATATATCCTTTCAACTATTACAGACTCACCCACCAGAGTAGACACATGAATAGGTATGTCAAGCTATTCACAATGTAAATCAAGACTATTAGCAAATGCGGAAGATACATATGAAAATGTGGAT-CCAGGATCAAACAATACAGAATCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCTGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="79895" stop="81154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80195" g_stop="80854" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80195" e_stop="80854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCTATCCTTCTTCTTCACAAACAAAACCGAAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGAGAGCCATTCTATAAGGGGGTATAGAAAAGGGGCGAGTACCCGATTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACAGGGAAGATCTGCAGGGAACACATCAAAAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTTAGATGTGTCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTT-TAAGATAACCAAGTCTACATAAGTATTGTTCCCCACGAAATTCACCAAACAAGACCTATATATCCTTTCAACTATTACAGACTCACCCACCAGAGTAGACACATGAATAGGTATGTCAAGCTATTCACAATGTAAATCAAGACTATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="80298" stop="81223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80598" g_stop="80927" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80598" e_stop="80927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTT-TAAGATAACCAAGTCTACATAAGTATTGTTCCCCACGAAATTCACCAAACAAGACCTATATATCCTTTCAACTATTACAGACTCACCCACCAGAGTAGACACATGAATAGGTATGTCAAGCTATTCACAATGTAAATCAAGACTATTAGCAAATGCGGAAGATACATATGAAAATGTGGATCCAGGATCAAACAATACAGAATCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="81225" stop="82544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81525" g_stop="82244" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81525" e_stop="82244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGTGGAATGAAACAAAGTTGGGTGGCATACCTTGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTGCGGGGTATATACTTCTCCATAAACAAACTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCAGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATAAAAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAGAGTTCATGTTGATCATTTGTCATTATAGGCACTGTAGTTAGACGAGGAAACGTGCCTATTTCCAATGGAAAATCCATGCGGGGAGCCGCAGTAGCCGCATGTTGTACCTCCGAACCCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTAAGATACGCAAGAACCTGATTGATCCTCTTTGGGGTAGGTTGGGGAGGCAATCCCTCATTCTGTACTTGTTCAGTTTCCCCTTCCTCACCCTCTCT-TACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="81228" stop="82493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81528" g_stop="82191" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81528" e_stop="82191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGAATGAAACAAAGTTGGGTGGCATACCTTGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTGCGGGGTATATACTTCTCCATAAACAAACTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCAGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATAAAAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAGAGTTCATGTTGATCATTTGTCATTATAGGCACTGTAGTTAGACGAGGAAACGTGCCTATTTCCAATGGAAAATCCATGCGGGGAGCCGCAGTAGCCGCATGTTGTACCTCCGAACCCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTAAGATACGCAAGAACCTGATTGATCCTCTTTGGGGTAGGTTGGGGAGGCA-ATCCCTCATTCTGTACTTGTTCAGTTTCCCCTTCCTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="-" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="82548" stop="81395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82248" g_stop="81695" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82248" e_stop="81695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAAAGAGGATCAATCAGGTTCTTGCGTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGGTTCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATTTTCCATTGGAAATAGGCACGTTTCCTCGTCTAACTACAGTGCCTATAATGACAAATGATCAACATGAACTCTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTTTTATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACTGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="-" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="84363" stop="82939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84063" g_stop="83743" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83742" i_stop="83638" i_length="105">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83637" g_stop="83239" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="717" r_length="397" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="-" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84063" e_stop="83743"/>
          <exon e_start="83637" e_stop="83239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTGAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAAACCTAATCTGTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGACGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATTGAAGGATATTAGGGGATCGGGTGTCATGAACCGACATGTTGATTTAGGGGATCAGGTGTCACGAACCGACACATAGATTTAGGGGATCAGGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTAACGAACCGACACATAGACTTAGGGGATCGGGTGTCACAAACAGACACGTAGATTTAGGGGATCGGGTGTAACGAACCGACAAGTAGATTTAGGGGATTGGGTGTCACGAACCGACACGTAGACTTAGGGGATCGAGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACCAACCGACACGTAGATTTAGAGGATAGGGTGTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACG-TCCGACACATAGTAGTAGGGGATCAGAGTGTTACGTATCGACACAAGAGGATTAATGAATATGAGGGATCAGAGTGTCATGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATGTAATGAACATAA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTC.........................................................................................................ACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACATAGA-TTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="-" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="84363" stop="76163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84063" g_stop="83660" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84063" e_stop="83660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTGAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAAACCTAATCTGTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGACGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATTGAAGGATATTAGGGGATCGGGTGTCATGAACCGACATGTTGATTTAGGGGATCAGGTGTCACGAACCGACACATAGATTTAGGGGATCAGGTGTCATGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>23</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="14018" PGL_stop="13358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14018" e_stop="13358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="14018" e_stop="13358" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14018" stop="13358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATGTATCCTCCTAATTTTCTACTTGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTAAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCCCATGACTTTTATGGAGAGCAATACTCATGTAGTCTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAACATCGCAATCTTAGATTGCAATGCTAAAACTGTGACATTGGCCAAGCCTGAGATAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTCATTGGTGCTAAGAGAATGGTTAGAAAGGCTTGTTTAGCTTTCTGGGCACACCTCAGGGATGATACTACCCAAGTACCCTACATTGAGTCGATTCCGGTAGTCCGTGAGTTTCTGGATGTGCTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGCATTGATCTGGAGCTGGGTACTCGCCCCATTTCCATACCTCCTTATAGAATGGCTCCAGCGGAGTTAAGGGAATTACAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  *  F  S  T  C  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  K  S  V  I  V  E  K  V  Y  R  S  C  P  M  T  F  M  E  S  N  T  H  V  V  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  I  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  E  I  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  I  G  A  K  R  M  V  R  K  A  C  L  A  F  W  A  H  L  R  D  D  T  T  Q  V  P  Y  I  E  S  I  P  V  V  R  E  F  L  D  V  L  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  L  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  Q  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  M  Y  P  P  N  F  L  L  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  P  *  L  L  W  R  A  I  L  M  *  S  W  L  S  *  K  W  L  T  S  M  *  F  W  V  *  L  G  F  L  Q  T  S  Q  S  *  I  A  M  L  K  L  *  H  W  P  S  L  R  *  I  R  *  C  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  S  L  V  L  R  E  W  L  E  R  L  V  *  L  S  G  H  T  S  G  M  I  L  P  K  Y  P  T  L  S  R  F  R  *  S  V  S  F  W  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  T  F  A  L  I  W  S  W  V  L  A  P  F  P  Y  L  L  I  E  W  L  Q  R  S  *  G  N  Y  R  P  N  F  K  S  C  *  V  K  V  S  L  D  Q  V  H  P  L  G </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  C  I  L  L  I  F  Y  L  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  H  D  F  Y  G  E  Q  Y  S  C  S  L  G  Y  L  R  N  G  *  L  R  C  N  S  G  Y  D  L  A  F  S  K  H  R  N  L  R  L  Q  C  *  N  C  D  I  G  Q  A  *  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  H  W  C  *  E  N  G  *  K  G  L  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  L  H  *  V  D  S  G  S  P  *  V  S  G  C  A  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  *  S  G  A  G  Y  S  P  H  F  H  T  S  L  *  N  G  S  S  G  V  K  G  I  T  G  P  T  S  R  V  V  K  *  R  F  H  *  T  K  C  I  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13979" stop="13359"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSTCLNLHCELLDMPIRVSTPVGKSVIVEKVYRSCPMTFMESNTHVVLVILEMVDFDVILGMTWLSPNIAILDCNAKTVTLAKPEIDPLVWEGDYTSTPVRIISFIGAKRMVRKACLAFWAHLRDDTTQVPYIESIPVVREFLDVLPADLPGMPPDRDIDFCIDLELGTRPISIPPYRMAPAELRELQAQLQELLSKGFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="76161" PGL_stop="75683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76161" e_stop="75683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="76161" e_stop="75683" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76161" stop="75924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76160" stop="75683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGTTCCGACACATAGTAGTATGGGATCGGAGTGTCACGTACCGACATAAGAGGATTAATAAATATGAGGGATCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAACATACTCAATATAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGATAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTGTCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCTGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATATTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACCCTAGCCAGTCTTCATTACTCCGGATAGCAGGGTGAGCTAATCCTTCTAGCTTGGATT</gDNA_template>
            <first_frame> S  R  S  D  T  *  *  Y  G  I  G  V  S  R  T  D  I  R  G  L  I  N  M  R  D  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  T  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  D  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  V  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  *  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  Y  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  P  *  P  V  F  I  T  P  D  S  R  V  S  *  S  F  *  L  G   </first_frame>
            <second_frame>  H  V  P  T  H  S  S  M  G  S  E  C  H  V  P  T  *  E  D  *  *  I  *  G  I  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  H  T  Q  Y  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  I  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  I  F  F  L  F  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  P  S  Q  S  S  L  L  R  I  A  G  *  A  N  P  S  S  L  D  </second_frame>
            <third_frame>   T  F  R  H  I  V  V  W  D  R  S  V  T  Y  R  H  K  R  I  N  K  Y  E  G  S  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  I  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  C  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  L  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  I  F  S  S  C  L  F  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  S  G  *  Q  G  E  L  I  L  L  A  W  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0305L18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="76913" PGL_stop="77471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76913" e_stop="77471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="76913" e_stop="77471" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76913" stop="77468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76914" stop="77471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76914" stop="77458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76914" stop="77385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATTCTCCCTCTTTCTCTTTGTTCTTTCTATTTTCTTATTCAAACCGTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATGAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCTTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACATGTGAAGAAATCCGACCCAGACTGGGATTATGCAACCTGTGACGGCCCGTCATGCCTGCGACGGTCCGTCTTGCAGGTCATCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCTTTGACTGTCCGTCCTGCCATTCCGTCACGAAGTTTAGAGAGTCGATTTTCAGCACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACACCCTCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAGCGACTAAATAGGTCGTTACAATA</gDNA_template>
            <first_frame> F  D  S  P  S  F  S  L  F  F  L  F  S  Y  S  N  R  L  S  F  T  L  I  S  I  *  L  R  M  K  D  G  N  N  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  F  *  L  Y  N  *  S  R  N  S  P  K  R  P  L  K  H  V  K  K  S  D  P  D  W  D  Y  A  T  C  D  G  P  S  C  L  R  R  S  V  L  Q  V  I  A  R  F  R  D  S  I  S  T  K  E  S  V  T  V  R  H  A  F  D  C  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  N  F  *  V  F  *  N  E  T  P  S  T  V  R  R  A  H  D  G  P  S  W  V  P  S  S  Q  P  V  F  P  E  I  K  S  A  A  Q  S  D  *  I  G  R  Y  N  </first_frame>
            <second_frame>  L  I  L  P  L  S  L  C  S  F  Y  F  L  I  Q  T  V  F  L  L  P  *  L  V  Y  N  *  E  *  K  M  A  I  I  T  H  *  L  T  *  G  Y  L  F  *  P  P  S  N  *  T  Y  *  P  *  P  S  N  F  I  I  K  V  G  I  V  Q  N  V  P  *  N  M  *  R  N  P  T  Q  T  G  I  M  Q  P  V  T  A  R  H  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  L  *  R  S  V  T  P  L  T  V  R  P  A  I  P  S  R  S  L  E  S  R  F  S  A  P  N  F  R  I  S  K  C  F  E  T  R  H  P  R  R  S  V  V  P  M  T  V  R  R  G  F  R  R  L  S  L  F  F  Q  K  *  N  L  L  L  K  A  T  K  *  V  V  T  I </second_frame>
            <third_frame>   *  F  S  L  F  L  F  V  L  S  I  F  L  F  K  P  S  F  F  Y  P  N  *  Y  I  I  K  N  E  R  W  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  L  N  L  L  T  L  *  L  K  *  E  *  S  K  T  S  L  K  T  C  E  E  I  R  P  R  L  G  L  C  N  L  *  R  P  V  M  P  A  T  V  R  L  A  G  H  R  K  V  Q  R  L  N  F  H  Q  R  V  C  D  G  P  S  R  L  *  L  S  V  L  P  F  R  H  E  V  *  R  V  D  F  Q  H  P  I  S  E  F  L  S  V  L  K  R  D  T  L  D  G  P  S  C  P  *  R  S  V  V  G  S  V  V  S  A  C  F  S  R  N  K  I  C  C  S  K  R  L  N  R  S  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77099" stop="77341"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNSPKRPLKHVKKSDPDWDYATCDGPSCLRRSVLQVIARFRDSISTKESVTVRHAFDCPSCHSVTKFRESIFSTQFQNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="78125" PGL_stop="78301"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78125" e_stop="78301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="78125" e_stop="78301" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78125" stop="78301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCATACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  I  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  Y  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0305L18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="79606" PGL_stop="80955"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79606" e_stop="80955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="79606" e_stop="80955" e_length="1350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79606" stop="80318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79606" stop="80201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79606" stop="80131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79677" stop="80356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79677" stop="80035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80126" stop="80783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80195" stop="80955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80195" stop="80854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80598" stop="80927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGTTCCTTATTTTAGACACATTAGTAGTTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAGTAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTTTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCAAATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATTATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCTATCCTTCTTCTTCACAAACAAAACCGAAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGAGAGCCATTCTATAAGGGGGTATAGAAAAGGGGCGAGTACCCGATTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACAGGGAAGATCTGCAGGGAACACATCAAAAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTTAGATGTGTCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTTAAGATAACCAAGTCTACATAAGTATTGTTCCCCACGAAATTCACCAAACAAGACCTATATATCCTTTCAACTATTACAGACTCACCCACCAGAGTAGACACATGAATAGGTATGTCAAGCTATTCACAATGTAAATCAAGACTATTAGCAAATGCGGAAGATACATATGAAAATGTGGATCCAGGATCAAACAATACAGAATCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCTGAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  V  P  Y  F  R  H  I  S  S  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  I  I  S  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  F  W  H  I  R  C  P  Y  F  Q  L  M  I  T  K  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  S  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  E  S  H  S  I  R  G  Y  R  K  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  G  K  I  C  R  E  H  I  K  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  *  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  R  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  K  I  T  K  S  T  *  V  L  F  P  T  K  F  T  K  Q  D  L  Y  I  L  S  T  I  T  D  S  P  T  R  V  D  T  *  I  G  M  S  S  Y  S  Q  C  K  S  R  L  L  A  N  A  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  S  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  F  L  I  L  D  T  L  V  V  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  N  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  I  S  S  V  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  V  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  N  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  L  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  L  S  F  F  F  T  N  K  T  E  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  R  A  I  L  *  G  G  I  E  K  G  R  V  P  D  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  Q  G  R  S  A  G  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  F  R  C  V  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  L  R  *  P  S  L  H  K  Y  C  S  P  R  N  S  P  N  K  T  Y  I  S  F  Q  L  L  Q  T  H  P  P  E  *  T  H  E  *  V  C  Q  A  I  H  N  V  N  Q  D  Y  *  Q  M  R  K  I  H  M  K  M  W  I  Q  D  Q  T  I  Q  N  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  L   </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  *  T  H  *  *  F  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  T  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  *  F  L  A  H  P  L  P  V  F  S  I  D  D  N  Q  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  Y  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  V  G  S  L  C  T  S  E  N  S  Y  P  S  S  S  Q  T  K  P  K  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  R  G  E  Y  P  I  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  R  E  D  L  Q  G  T  H  Q  K  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  L  D  V  S  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  *  D  N  Q  V  Y  I  S  I  V  P  H  E  I  H  Q  T  R  P  I  Y  P  F  N  Y  Y  R  L  T  H  Q  S  R  H  M  N  R  Y  V  K  L  F  T  M  *  I  K  T  I  S  K  C  G  R  Y  I  *  K  C  G  S  R  I  K  Q  Y  R  I  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79771" stop="80109"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYIISKYDHKEIQIWLKNPVHQTHERSRGIRKTKRHHYKFVMPIPGSKSSFWHIRCPYFQLMITKSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80333" stop="80578"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEKGRVPDSRSIQKSISLSGGIQGRSAGNTSKNSRTTETDSIEGTWVVSSFRCVKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="81621" PGL_stop="80178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81621" e_stop="81449"/>
            <exon e_start="80705" e_stop="80178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.902"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="81621" e_stop="81449" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81448" i_stop="80706" i_length="743"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="80705" e_stop="80178" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81621" stop="81449"/>
              <exon start="80705" stop="80178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCATTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAG : AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGACACATCTAAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTTTTGATGTGTTCCCTGCAGATCTTCCCTGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAATCGGGTACTCGCCCCTTTTCTATACCCCCTTATAGAATGGCTCTCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTTCGGTTTTGTTTGTGAAGAAGAAGGATAGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  K  V  C  H  P  T  L  F  H  S  T  R  A  D  S  P  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  G  Y  S  E  I  F  S  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  E  F  C  D  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  D  T  S  K  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  P  *  V  F  *  C  V  P  C  R  S  S  L  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  I  G  Y  S  P  L  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  F  G  F  V  C  E  E  E  G  *  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  I  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  T  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  F  D  V  F  P  A  D  L  P  C  M  P  P  D  R  D  I  D  F  C  I  D  L  E  S  G  T  R  P  F  S  I  P  P  Y  R  M  A  L  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  S  V  L  F  V  K  K  K  D  R  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  Q  G  M  P  P  N  F  V  S  F  H  K  S  G  F  A  V  L  *  R  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  R  L  Q  R  N  L  F  K  :  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  R  I  L  R  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  *  H  I  *  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  L  M  C  S  L  Q  I  F  P  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  S  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  I  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81620" stop="81449"/>
                    <exon start="80705" stop="80179"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAYEAKFRALSRYATQLCFIPQERIRRFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLTHLKDDTTQVPSIESVSVVREFFDVFPADLPCMPPDRDIDFCIDLESGTRPFSIPPYRMALAELRELKAQLQELLSKGFIRPSASPWGASVLFVKKKDRSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="81525" PGL_stop="82244"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81525" e_stop="82244"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="81525" e_stop="82244" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81525" stop="82244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81528" stop="82191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAATCCGCTCTTGTGGAATGAAACAAAGTTGGGTGGCATACCTTGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTGCGGGGTATATACTTCTCCATAAACAAACTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCAGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATAAAAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAGAGTTCATGTTGATCATTTGTCATTATAGGCACTGTAGTTAGACGAGGAAACGTGCCTATTTCCAATGGAAAATCCATGCGGGGAGCCGCAGTAGCCGCATGTTGTACCTCCGAACCCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTAAGATACGCAAGAACCTGATTGATCCTCTTTGGGGTAGGTTGGGGAGGCAATCCCTCATTCTGTACTTGTTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCT</gDNA_template>
            <first_frame> A  N  P  L  L  W  N  E  T  K  L  G  G  I  P  *  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  Q  S  A  G  Y  I  L  L  H  K  Q  T  R  E  *  C  P  S  H  R  W  C  L  S  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  I  K  V  N  Q  K  I  I  G  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  E  F  M  L  I  I  C  H  Y  R  H  C  S  *  T  R  K  R  A  Y  F  Q  W  K  I  H  A  G  S  R  S  S  R  M  L  Y  L  R  T  L  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  *  P  T  K  I  R  K  N  L  I  D  P  L  W  G  R  L  G  R  Q  S  L  I  L  Y  L  F  S  F  P  F  L  T  L  S  Y  Y  F  F  S  R  W  R  S  H  R  P  S  I  R  W  A </first_frame>
            <second_frame>  R  I  R  S  C  G  M  K  Q  S  W  V  A  Y  L  D  N  A  R  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  K  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  T  V  V  R  R  G  N  V  P  I  S  N  G  K  S  M  R  G  A  A  V  A  A  C  C  T  S  E  P  *  G  A  G  A  E  N  T  G  G  V  *  P  *  S  D  N  P  L  R  Y  A  R  T  *  L  I  L  F  G  V  G  W  G  G  N  P  S  F  C  T  C  S  V  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G   </second_frame>
            <third_frame>   E  S  A  L  V  E  *  N  K  V  G  W  H  T  L  I  M  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  K  C  G  V  Y  T  S  P  *  T  N  *  R  M  M  P  K  S  *  V  V  P  Q  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  K  S  Q  P  E  N  H  R  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  R  V  H  V  D  H  L  S  L  *  A  L  *  L  D  E  E  T  C  L  F  P  M  E  N  P  C  G  E  P  Q  *  P  H  V  V  P  P  N  P  E  V  L  V  Q  K  T  L  E  V  F  D  L  D  Q  I  T  H  *  D  T  Q  E  P  D  *  S  S  L  G  *  V  G  E  A  I  P  H  S  V  L  V  Q  F  P  L  P  H  P  L  L  L  L  L  Q  S  V  E  E  S  P  P  *  Y  Q  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81526" stop="81735"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRSCGMKQSWVAYLDNARNLASYAVTDILPCSRLKNSSLFLSLKVRGIYFSINKLENDAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="82248" PGL_stop="81695"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82248" e_stop="81695"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="82248" e_stop="81695" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82248" stop="81695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAAAGAGGATCAATCAGGTTCTTGCGTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGGTTCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATTTTCCATTGGAAATAGGCACGTTTCCTCGTCTAACTACAGTGCCTATAATGACAAATGATCAACATGAACTCTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTTTTATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACTGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  T  S  T  E  *  G  I  A  S  P  T  Y  P  K  E  D  Q  S  G  S  C  V  S  *  W  V  I  *  S  R  S  N  T  S  S  V  F  C  T  S  T  S  G  F  G  G  T  T  C  G  Y  C  G  S  P  H  G  F  S  I  G  N  R  H  V  S  S  S  N  Y  S  A  Y  N  D  K  *  S  T  *  T  L  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  L  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  *  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  K  R  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  G  S  E  V  Q  H  A  A  T  A  A  P  R  M  D  F  P  L  E  I  G  T  F  P  R  L  T  T  V  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  F  Y  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  N  K  Y  R  M  R  D  C  L  P  N  L  P  Q  R  G  S  I  R  F  L  R  I  L  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  H  Q  H  L  R  V  R  R  Y  N  M  R  L  L  R  L  P  A  W  I  F  H  W  K  *  A  R  F  L  V  *  L  Q  C  L  *  *  Q  M  I  N  M  N  S  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  T  F  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  L  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82247" stop="81696"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVVREGEEGETEQVQNEGLPPQPTPKRINQVLAYLSGLSDQGQTPPVFSAPAPQGSEVQHAATAAPRMDFPLEIGTFPRLTTVPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDFYELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="84063" PGL_stop="83239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84063" e_stop="83743"/>
            <exon e_start="83637" e_stop="83239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.938"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="84063" e_stop="83743" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83742" i_stop="83638" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="83637" e_stop="83239" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84063" stop="83743"/>
              <exon start="83637" stop="83239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTGAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAAACCTAATCTGTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGACGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATTGAAGGATATTAGGGGATCGGGTGTC : ACGAACCGACACATAGACTTAGGGGATCGGGTGTCACAAACAGACACGTAGATTTAGGGGATCGGGTGTAACGAACCGACAAGTAGATTTAGGGGATTGGGTGTCACGAACCGACACGTAGACTTAGGGGATCGAGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACCAACCGACACGTAGATTTAGAGGATAGGGTGTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTCCGACACATAGTAGTAGGGGATCAGAGTGTTACGTATCGACACAAGAGGATTAATGAATATGAGGGATCAGAGTGTCATGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATGTAATGAACATAA</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  E  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  N  L  I  C  L  L  M  M  M  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  R  L  G  K  K  E  G  L  M  N  *  L  K  D  I  R  G  S  G  V  :  T  N  R  H  I  D  L  G  D  R  V  S  Q  T  D  T  *  I  *  G  I  G  C  N  E  P  T  S  R  F  R  G  L  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  Q  P  T  R  R  F  R  G  *  G  V  T  N  R  H  I  D  L  G  D  R  S  V  T  S  D  T  *  *  *  G  I  R  V  L  R  I  D  T  R  G  L  M  N  M  R  D  Q  S  V  M  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  M  *  *  T  * </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  T  *  S  V  C  *  *  *  C  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  *  R  I  L  G  D  R  V  S :   R  T  D  T  *  T  *  G  I  G  C  H  K  Q  T  R  R  F  R  G  S  G  V  T  N  R  Q  V  D  L  G  D  W  V  S  R  T  D  T  *  T  *  G  I  E  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  E  D  R  V  S  R  T  D  T  *  I  *  G  I  G  V  S  R  P  T  H  S  S  R  G  S  E  C  Y  V  S  T  Q  E  D  *  *  I  *  G  I  R  V  S  C  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  C  N  E  H   </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  K  P  N  L  F  V  N  D  D  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  T  P  W  *  E  R  R  L  D  E  L  I  E  G  Y  *  G  I  G  C   : H  E  P  T  H  R  L  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  *  R  T  D  K  *  I  *  G  I  G  C  H  E  P  T  R  R  L  R  G  S  S  V  T  N  R  H  V  D  L  G  D  R  V  S  P  T  D  T  *  I  *  R  I  G  C  H  E  P  T  H  R  F  R  G  S  E  C  H  V  R  H  I  V  V  G  D  Q  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  S  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  V  M  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0305L18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="84063" e_stop="83660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="84063" e_stop="83660" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84063" stop="83660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTGAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAAACCTAATCTGTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGACGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATTGAAGGATATTAGGGGATCGGGTGTCATGAACCGACATGTTGATTTAGGGGATCAGGTGTCACGAACCGACACATAGATTTAGGGGATCAGGTGTCATGAACCGACACG</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  E  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  N  L  I  C  L  L  M  M  M  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  R  L  G  K  K  E  G  L  M  N  *  L  K  D  I  R  G  S  G  V  M  N  R  H  V  D  L  G  D  Q  V  S  R  T  D  T  *  I  *  G  I  R  C  H  E  P  T   </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  T  *  S  V  C  *  *  *  C  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  *  R  I  L  G  D  R  V  S  *  T  D  M  L  I  *  G  I  R  C  H  E  P  T  H  R  F  R  G  S  G  V  M  N  R  H  </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  K  P  N  L  F  V  N  D  D  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  T  P  W  *  E  R  R  L  D  E  L  I  E  G  Y  *  G  I  G  C  H  E  P  T  C  *  F  R  G  S  G  V  T  N  R  H  I  D  L  G  D  Q  V  S  *  T  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0305L18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 182 chains have been computed
$ 
$ memory statistics:
$ 199976 bytes spliced alignments in total
$ 23 spliced alignments have been stored
$ 8694 bytes was the average size of a spliced alignment
$ 15152 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1683 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 216 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:23:37
-->
