<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:23:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592023" ref_strand="+" ref_description="SGN-U592023 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-56) Putative; ">
      <seq>ttacttcggcacgaggatttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="-" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="14319" stop="13080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14019" g_stop="13380" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="654" r_length="638" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="-" ref_id="SGN-U592023" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14019" e_stop="13380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGATCCTGGATCCACATTTTCATATGTATCCTCCTAATTTTCTACTTGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTAAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCCCATGACTTTTATGGAGAGCAATACTCATGTAGTCTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAACATCGCAATCTTAGATTGCAATGCTAAAACTGTGACATTGGCCAAGCCTGAGATAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTCATTGGTGCTAAGAGAATGGTTAGAAAGGCTTGTTTAGCTTTCTGGGCACACCTCAGGGATGATACTACCCAAGTACCCTACATTGAGTCGATTCCGGTAGTCCGTGAGTTTCTGGATGTGCTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGCATTGATCTGGAGCTGGGTACTCGCCCCATTTCCATACCTCCTTATAGAATGGCTCCAGCGGAGTTAAGGGAATTACAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATT</genome_strand>
        <mrna_strand>ATTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGTGG-GAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599718" ref_strand="+" ref_description="SGN-U599718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205427|gb|ABI34389.1| (e_value=5e-23) Polyprotein,; ">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="77825" stop="78602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78125" g_stop="78301" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-U599718" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78125" e_stop="78301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCATACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="78040" stop="79131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78340" g_stop="78830" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78340" e_stop="78830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTCCGTATGCAATGTTTTCCAAAACATAGAAGTAAACTACGTACCTCTATATGATATGATGGATAGTGGAACCCCATGCAATCGGACAATTTTTGAGATATAGATCTTGATTAACTTCTCGGCATTGTAAGTCACCTTAACCGAAACAAAATGAGCATTCTTAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATCGTCTTTGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCCATCTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTACGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCATAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCAGGATGTATAGAATATTCAGAACTATGAGCCTCTGTAATAATGGTGTGGATCAAATCATCAACACGGG</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="79301" stop="80717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79605" g_stop="80417" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79605" e_stop="80417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGTTCCTTATTTTAGACACATTAGTAGTTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAGTAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTTTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCAAATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATTATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCTATCCTTCTTCTTCACAAACAAAACCGAAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGAGAGCCATTCTATAAGGGGGTATAGAAAAGGGGCGAGTACCCGATTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACAGGGAAGATCTG</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="-" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="82583" stop="79434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82284" g_stop="81412" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81411" i_stop="80298" i_length="1114">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80297" g_stop="79734" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1436" r_length="563" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="-" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82284" e_stop="81412"/>
          <exon e_start="80297" e_stop="79734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGAGGACGTCCTCTAGAGGAAGAGGATGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAAAGAGGATCAATCAGGTTCTTGCGTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGGTTCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATTTTCCATTGGAAATAGGCACGTTTCCTCGTCTAACTACAGTGCCTATAATGACAAATGATCAACATGAACTCTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTTTTATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACTGAGGCACCACCTATGACTTGGGCATCATTCTCTAGTTTGTTTATGGAGAAGTATATACCCCGCACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCATTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGATGTGGTAGACTTCGTGATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCGCCATGACAACTACATCAAAAAGGTTCCGAAACGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCAGAGGTTATGCAGTTTGATCCATTTAGTCTTCACTACAGACTGTAATTATAGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGCTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGCTGGTCGAGGTAATGGTGGTCACCCAAACGGCCTGGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAAACAAACGAAAGGGCCTATTGTTATGCTTTCCCTGGGTGGTCAGAAGCGGAGACATCAGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGATTCTGTATTGTTTGATCCTGGATCCACATTTTCATATGTATCTTCCGCATTTGCTAATAGTCTTGATTTACATTGTGAATAGCTTGACATACCTATTCATGTGTCTACTCTGGTGGGTGAGTCTGTAATAGTTGAAAGGATATATAGGTCTTGTTTGGTGAATTTCGTGGGGAACAATACTTATGTAGACTTGGTTATCTTAAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGACACATCTAAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTTTTGATGTGTTCCCTGCAGATCTTCCCTGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAATCGGGTACTCGCCCCTTTTCTATACCCCCTTATAGAATGGCTCTCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTTCGGTTTTGTTTGTGAAGAAGAAGGATAGGAGTTTTCGGATGTGCATAGACTACCGACAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATAATTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATTTGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAAACTACTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGATTTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTACTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGTTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578865" ref_strand="+" ref_description="SGN-U578865 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=8e-164) Polyprotein,; (*SWP) sp|Q99315|YG31B_YEAST (e_value=2e-17) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>aagaacagcgacaaggggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcgcctagcccatctgatactagggcagtgactcctccaccgactgaggaagtaataagagaaggggaggatggggaaactgaacaagtgcagaatgagggattgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttatctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatcggaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttgggcctcattctctagcttgtttatggagaagtatatcccccgaactttgagggataggaaaagggatgagttcttgagcctagagcaaggtaggatgtcggtcaatgcatatgaggctaagtttcgtgcattatcccggtatgccacccaactgtgtttcagtccacaagagcgaattcgccggtttgtgaaggggttgaggtcagaattgcagatttcggccttacaaatagcggcaacgacaaaatccttccaagaggtggtagactttgtgatagaagtggaaggagtgaagccagacgacttcatcccgacatcgacatcaaaaaggtttcgaaagggaggtgagtttaatggtgcttacactagaggacagggttagggaagttactcagtccgaccaattcagtcttcactacagactgtagttgggggtccacctccgaccggtcaacacttctctgagagacctatgcatgaacccagagagtgctatggatgtggggagattggacatattaagagatattgtccaaaacagagttacagacctccaaaggttagaggtagaggtggtcatggcagaggccgttattctggaggacgtggcggtcgaggaaatggtggtcaccaaaacggccgaggtgatgggaaaactggagccactacatcacaacaaggtaggggcaacagacagaagaacgatagggcccattgttacgctttccctgggcggtctgaagcggaggaatctgatgctgtcatcacaggtaatcttttggtttgtgattgcatggcttctgtattgtttgatcctggatccacgttttcttatgtatcttcctcatttgctaacggtctaaatttacattgtgaattacttgatatgcctattcgtgtttctactccggtgggtgagtctgtggtagttgaaaaggtatataggtcttgtttggtgaactttgtggggagcaacacttatgtagatttggttatcttagaaatggttgattttgatgtaattctgggtatgacttggctttctccgcaatttgcgatcttggattgtaatgctaaaacggtgacattagccaagcctgggacagatccgttagtgtgggagggtgactacacttccaatccggtgcgcatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggatgacactacccaagtaccttcgattgagtcggtttctatagtctgtgagtttttggatgtgttccctgcagatcttcctggtatgccaccagatagggatattgacttctgtatcgatcttgaaccgggcacacgccccatttctatacccccttatagaatggctcccgtagagttaagagagttaaaggcccaacttcaagagttgttgagcaaaggtttcattagaccaagtgcatctccttggggtgctccgattttgtttgtgaagaagaaggatgggagttttagaatgtgcatagactacagacaactgaacaaggtaactattaagaacaagtatcctcttcctcgcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="-" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="82614" stop="79825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82314" g_stop="80124" g_length="2191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2192" r_length="2192" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="-" ref_id="SGN-U578865" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>2191</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82314" e_stop="80124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTAGCGGCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGATGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAAAGAGGATCAATCAGGTTCTTGCGTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGGTTCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATTTTCCATTGGAAATAGGCACGTTTCCTCGTCTAACTACAGTGCCTATAATGACAAATGATCAACATGAACTCTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTTTTATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACTGAGGCACCACCTATGACTTGGGCATCATTCTCTAGTTTGTTTATGGAGAAGTATATACCCCGCACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCATTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGATGTGGTAGACTTCGTGATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCGCCATGACAACTACATCAAAAAGGTTCCGAAACGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCAGAGGTTATGCAGTTTGATCCATTTAGTCTTCACTACAGACTGTAATTATAGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGCTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGCTGGTCGAGGTAATGGTGGTCACCCAAACGGCCTGGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAAACAAACGAAAGGGCCTATTGTTATGCTTTCCCTGGGTGGTCAGAAGCGGAGACATCAGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGATTCTGTATTGTTTGATCCTGGATCCACATTTTCATATGTATCTTCCGCATTTGCTAATAGTCTTGATTTACATTGTGAATAGCTTGACATACCTATTCATGTGTCTACTCTGGTGGGTGAGTCTGTAATAGTTGAAAGGATATATAGGTCTTGTTTGGTGAATTTCGTGGGGAACAATACTTATGTAGACTTGGTTATCTTA-AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGACACATCTAAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTTTTGATGTGTTCCCTGCAGATCTTCCCTGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAATCGGGTACTCGCCCCTTTTCTATACCCCCTTATAGAATGGCTCTCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTTCGGTTTTGTTTGTGAAGAAGAAGGATAGGAGTTTTCGGATGTGCATAGACTACCGACAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATA</genome_strand>
        <mrna_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAAATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCATCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTAGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAAGGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGCGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACAGACAGAAGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGAATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAACGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGCATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCTATAGTCTGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGTAGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGTTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTAGAATGTGCATAGACTACAGACAACTGAACAAGGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592109" ref_strand="-" ref_description="SGN-U592109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=5e-59) Putative; ">
      <seq>ggaaaagggatgagttcttgancctatagcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="-" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="81949" stop="79914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81649" g_stop="81449" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81448" i_stop="80706" i_length="743">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80705" g_stop="80177" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="723" r_length="522" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="-" ref_id="SGN-U592109" ref_strand="-">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81649" e_stop="81449"/>
          <exon e_start="80705" e_stop="80177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCATTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGATGTGGTAGACTTCGTGATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCGCCATGACAACTACATCAAAAAGGTTCCGAAACGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCAGAGGTTATGCAGTTTGATCCATTTAGTCTTCACTACAGACTGTAATTATAGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGCTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGCTGGTCGAGGTAATGGTGGTCACCCAAACGGCCTGGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAAACAAACGAAAGGGCCTATTGTTATGCTTTCCCTGGGTGGTCAGAAGCGGAGACATCAGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGATTCTGTATTGTTTGATCCTGGATCCACATTTTCATATGTATCTTCCGCATTTGCTAATAGTCTTGATTTACATTGTGAATAGCTTGACATACCTATTCATGTGTCTACTCTGGTGGGTGAGTCTGTAATAGTTGAAAGGATATATAGGTCTTGTTTGGTGAATTTCGTGGGGAACAATACTTATGTAGACTTGGTTATCTTAAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGACACATCTAAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTTTTGATGTGTTCCCTGCAGATCTTCCCTGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAATCGGGTACTCGCCCCTTTTCTATACCCCCTTATAGAATGGCTCTCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTTCGGTTTTGTTTGTGAAGAAGAAGGATAGGAGTTTTCGGATGTGCATAGACTACCG</genome_strand>
        <mrna_strand>GGAAAAGGGATGAGTTCTTGANCCTATAGCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAGATCG---GCAGTTTTTGAATGTGCATAGACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="80297" stop="81220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80596" g_stop="80920" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80596" e_stop="80920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTT-TAAGATAACCAAGTCTACATAAGTATTGTTCCCCACGAAATTCACCAAACAAGACCTATATATCCTTTCAACTATTACAGACTCACCCACCAGAGTAGACACATGAATAGGTATGTCAAGCTATTCACAATGTAAATCAAGACTATTAGCAAATGCGGAAGATACATATGAAAATGTGGATCCAGGATCAAACAATACAGAATCCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581303" ref_strand="+" ref_description="SGN-U581303 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-69) Polyprotein,; ">
      <seq>cacgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtctgggacaatttctcctaatatgtccaatctccccacatccataacattctctggagtcaatcataggcccctcggagaagtgttgaccggtctgaggtggtcccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctccctttcgaagcctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaagtccgggggatatacttctccataaacaaactagagaatgaggcccaagtcataggtggtgcctctattggttgacactcgatatgtgaccgccaccacattttggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcctgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcactgccctagtatcagatgggctaggtgctcgtcctcttcctctagaggacgtcctcccacgacctctaccacggccccttgccgctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="+" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="80507" stop="82613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80807" g_stop="82314" g_length="1508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1508" r_length="1508" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="+" ref_id="SGN-U581303" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>1508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80807" e_stop="82314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAATAGGTATGTCAAGCTATTCACAATGTAAATCAAGACTATTAGCAAATGCGGAAGATACATATGAAAATGTGGATCCAGGATCAAACAATACAGAATCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCTGATGTCTCCGCTTCTGACCACCCAGGGAAAGCATAACAATAGGCCCTTTCGTTTGTTTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCAGGCCGTTTGGGTGACCACCATTACCTCGACCAGCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTAGCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCTATAATTACAGTCTGTAGTGAAGACTAAATGGATCAAACTGCATAACCTCTGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCGTTTCGGAACCTTTTTGATGTAGTTGTCATGGCGAAGTCATCTGGCTTCACTCCCTCTACCTCTATCACGAAGTCTACCACATCTTGAAAAGATTTCGCTGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGATCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGAATGAAACAAAGTTGGGTGGCATACCTTGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTGCGGGGTATATACTTCTCCATAAACAAACTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCAGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATAAAAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAGAGTTCATGTTGATCATTTGTCATTATAGGCACTGTAGTTAGACGAGGAAACGTGCCTATTTCCAATGGAAAATCCATGCGGGGAGCCGCAGTAGCCGCATGTTGTACCTCCGAACCCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTAAGATACGCAAGAACCTGATTGATCCTCTTTGGGGTAGGTTGGGGAGGCAATCCCTCATTCTGTACTTGTTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCATCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTT</genome_strand>
        <mrna_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577296" ref_strand="+" ref_description="SGN-U577296 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-54) Polyprotein,; ">
      <seq>aagaacaacggtaagaggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcagtgactcctccaccgactgaggagataataagagaaggggaggatggggaaactgaacaagtgcaaaacgaggaaatgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttgtctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccacatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcagaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtcaaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttggacctcattctctagcttttttatggagaagtatatcccccggactttgagggataggaaaagggatgagttcctgagcctagagcaaggtaggatgtcggttaatgcttatgaagctaagttccgtgcactatccagatatgccacccaactatgtttcagtccacaagagcggattcgccgttttgtgaaggggttgaggtcagagttgtggatttcagccttatagatagcggctactgcaaaatccttccaagaggtggtatatttcgtggtagaggtggaaggagtgaagccagatgacttcaccacgacatcgacatcaaagaggtttcgtaagggaggtgagtttaagggttcttactctagaggacaaggttccggaggttactcagttcgaccatttcaatcttcactacagaccgtagttgggggtccacctcagaccggtcaacacttctccgagagacctatgcttgactccagagagtgttatgggtgtggggagactgggcatattaagagaaattgtccaaaacagagttatagacccccaatggctagaggtagaggtggtcatggtagaggccgtcattctggaggccgtggtggtcgacccacgggtggtcaccaagacggccgaggtgatgggcaaactggagccactacatcacaacatggtaggggcaacagacagacgaacgatatggcccattgttacgctttccctgggcggtttgaagcggaggcatctgatgctgtcatcacaggtaatcttctggtttgtgattgcacggcttctgtattttttgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="-" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="82614" stop="80589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82314" g_stop="80889" g_length="1426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1426" r_length="1426" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="-" ref_id="SGN-U577296" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>1426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82314" e_stop="80889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTAGCGGCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGATGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAAAGAGGATCAATCAGGTTCTTGCGTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGGTTCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATTTTCCATTGGAAATAGGCACGTTTCCTCGTCTAACTACAGTGCCTATAATGACAAATGATCAACATGAACTCTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTTTTATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACTGAGGCACCACCTATGACTTGGGCATCATTCTCTAGTTTGTTTATGGAGAAGTATATACCCCGCACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCATTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGATGTGGTAGACTTCGTGATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCGCCATGACAACTACATCAAAAAGGTTCCGAAACGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCAGAGGTTATGCAGTTTGATCCATTT-AGTCTTCACTACAGACTGTAATTATAGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGCTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGCTGGTCGAGGTAATGGTGGTCACCCAAACGGCCTGGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAAACAAACGAAAGGGCCTATTGTTATGCTTTCCCTGGGTGGTCAGAAGCGGAGACATCAGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGATTCTGTATTGTTTGATCCT</genome_strand>
        <mrna_strand>AAGAACAACGGTAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGATAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAACGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCACATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCAGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGACCTCATTCTCTAGCTTTTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAAGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTATAGATAGCGGCTACTGCAAAATCCTTCCAAGAGGTGGTATATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAGAGGTTTCGTAAGGGAGGTGAGTTTAAGGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGA-CCATTTCAATCTTCACTACAGACCGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAAGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGCCGTGGTGGTCGACCCACGGGTGGTCACCAAGACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTTTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCACGGCTTCTGTATTTTTTGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590648" ref_strand="+" ref_description="SGN-U590648 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-17) Polyprotein,; ">
      <seq>gcacctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0305L18-jyrdK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0305L18.1" temp_strand="-" temp_description="C00HBa0305L18.1  CU462870.14 htgs_phase:3 submitted_to_sgn_as:C04HBa0305L18 sequenced_by:sanger upload_account_name:uk">
        <position start="82550" stop="81395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82250" g_stop="81695" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0305L18.1" gen_strand="-" ref_id="SGN-U590648" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0305L18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82250" e_stop="81695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAAAGAGGATCAATCAGGTTCTTGCGTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGGTTCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATTTTCCATTGGAAATAGGCACGTTTCCTCGTCTAACTACAGTGCCTATAATGACAAATGATCAACATGAACTCTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTTTTATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACTGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>GCACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>11</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="14019" PGL_stop="13380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14019" e_stop="13380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="14019" e_stop="13380" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14019" stop="13380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGATCCTGGATCCACATTTTCATATGTATCCTCCTAATTTTCTACTTGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTAAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCCCATGACTTTTATGGAGAGCAATACTCATGTAGTCTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAACATCGCAATCTTAGATTGCAATGCTAAAACTGTGACATTGGCCAAGCCTGAGATAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTCATTGGTGCTAAGAGAATGGTTAGAAAGGCTTGTTTAGCTTTCTGGGCACACCTCAGGGATGATACTACCCAAGTACCCTACATTGAGTCGATTCCGGTAGTCCGTGAGTTTCTGGATGTGCTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGCATTGATCTGGAGCTGGGTACTCGCCCCATTTCCATACCTCCTTATAGAATGGCTCCAGCGGAGTTAAGGGAATTACAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATT</gDNA_template>
            <first_frame> I  *  S  W  I  H  I  F  I  C  I  L  L  I  F  Y  L  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  H  D  F  Y  G  E  Q  Y  S  C  S  L  G  Y  L  R  N  G  *  L  R  C  N  S  G  Y  D  L  A  F  S  K  H  R  N  L  R  L  Q  C  *  N  C  D  I  G  Q  A  *  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  H  W  C  *  E  N  G  *  K  G  L  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  L  H  *  V  D  S  G  S  P  *  V  S  G  C  A  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  *  S  G  A  G  Y  S  P  H  F  H  T  S  L  *  N  G  S  S  G  V  K  G  I  T  G  P  T  S  R  V  V  K  *  R  F  H  </first_frame>
            <second_frame>  F  D  P  G  S  T  F  S  Y  V  S  S  *  F  S  T  C  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  K  S  V  I  V  E  K  V  Y  R  S  C  P  M  T  F  M  E  S  N  T  H  V  V  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  I  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  E  I  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  I  G  A  K  R  M  V  R  K  A  C  L  A  F  W  A  H  L  R  D  D  T  T  Q  V  P  Y  I  E  S  I  P  V  V  R  E  F  L  D  V  L  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  L  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  Q  A  Q  L  Q  E  L  L  S  K  G  F  I </second_frame>
            <third_frame>   L  I  L  D  P  H  F  H  M  Y  P  P  N  F  L  L  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  P  *  L  L  W  R  A  I  L  M  *  S  W  L  S  *  K  W  L  T  S  M  *  F  W  V  *  L  G  F  L  Q  T  S  Q  S  *  I  A  M  L  K  L  *  H  W  P  S  L  R  *  I  R  *  C  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  S  L  V  L  R  E  W  L  E  R  L  V  *  L  S  G  H  T  S  G  M  I  L  P  K  Y  P  T  L  S  R  F  R  *  S  V  S  F  W  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  T  F  A  L  I  W  S  W  V  L  A  P  F  P  Y  L  L  I  E  W  L  Q  R  S  *  G  N  Y  R  P  N  F  K  S  C  *  V  K  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13979" stop="13380"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSTCLNLHCELLDMPIRVSTPVGKSVIVEKVYRSCPMTFMESNTHVVLVILEMVDFDVILGMTWLSPNIAILDCNAKTVTLAKPEIDPLVWEGDYTSTPVRIISFIGAKRMVRKACLAFWAHLRDDTTQVPYIESIPVVREFLDVLPADLPGMPPDRDIDFCIDLELGTRPISIPPYRMAPAELRELQAQLQELLSKGFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="78125" PGL_stop="78301"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78125" e_stop="78301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="78125" e_stop="78301" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78125" stop="78301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCATACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  I  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  Y  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0305L18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="78340" PGL_stop="78830"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78340" e_stop="78830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="78340" e_stop="78830" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78340" stop="78830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCAATTCCGTATGCAATGTTTTCCAAAACATAGAAGTAAACTACGTACCTCTATATGATATGATGGATAGTGGAACCCCATGCAATCGGACAATTTTTGAGATATAGATCTTGATTAACTTCTCGGCATTGTAAGTCACCTTAACCGAAACAAAATGAGCATTCTTAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATCGTCTTTGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCCATCTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTACGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCATAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCAGGATGTATAGAATATTCAGAACTATGAGCCTCTGTAATAATGGTGTGGATCAAATCATCAACACGGG</gDNA_template>
            <first_frame> T  Q  F  R  M  Q  C  F  P  K  H  R  S  K  L  R  T  S  I  *  Y  D  G  *  W  N  P  M  Q  S  D  N  F  *  D  I  D  L  D  *  L  L  G  I  V  S  H  L  N  R  N  K  M  S  I  L  S  *  P  I  N  N  H  P  N  R  V  V  L  T  H  R  L  W  K  T  N  H  E  V  H  C  D  S  L  P  S  P  F  R  N  G  H  S  L  K  C  S  Y  G  P  L  V  F  I  L  Y  L  L  T  V  W  T  F  G  N  K  I  H  N  I  T  L  H  S  T  P  P  K  V  L  L  *  V  T  V  H  L  G  C  T  R  M  Y  R  I  F  R  T  M  S  L  C  N  N  G  V  D  Q  I  I  N  T   </first_frame>
            <second_frame>  P  N  S  V  C  N  V  F  Q  N  I  E  V  N  Y  V  P  L  Y  D  M  M  D  S  G  T  P  C  N  R  T  I  F  E  I  *  I  L  I  N  F  S  A  L  *  V  T  L  T  E  T  K  *  A  F  L  V  N  L  S  T  I  T  Q  I  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  L  H  S  G  M  G  I  L  *  S  V  P  T  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  L  A  I  K  S  I  I  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  S  E  L  *  A  S  V  I  M  V  W  I  K  S  S  T  R  </second_frame>
            <third_frame>   P  I  P  Y  A  M  F  S  K  T  *  K  *  T  T  Y  L  Y  M  I  *  W  I  V  E  P  H  A  I  G  Q  F  L  R  Y  R  S  *  L  T  S  R  H  C  K  S  P  *  P  K  Q  N  E  H  S  *  L  T  Y  Q  Q  S  P  K  *  S  R  T  Y  P  S  S  L  E  D  Q  P  R  S  P  L  R  F  S  P  I  S  I  P  E  W  A  F  S  E  V  F  L  R  A  F  G  V  H  T  L  L  V  D  S  L  D  I  W  Q  *  N  P  *  Y  H  A  S  F  Y  S  T  K  S  V  A  L  G  H  G  T  S  W  L  H  Q  D  V  *  N  I  Q  N  Y  E  P  L  *  *  W  C  G  S  N  H  Q  H  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78514" stop="78738"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNHPNRVVLTHRLWKTNHEVHCDSLPSPFRNGHSLKCSYGPLVFILYLLTVWTFGNKIHNITLHSTPPKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="79605" PGL_stop="80417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79605" e_stop="80417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="79605" e_stop="80417" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79605" stop="80417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGTTCCTTATTTTAGACACATTAGTAGTTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAGTAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTTTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCAAATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATTATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCTATCCTTCTTCTTCACAAACAAAACCGAAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGAGAGCCATTCTATAAGGGGGTATAGAAAAGGGGCGAGTACCCGATTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACAGGGAAGATCTG</gDNA_template>
            <first_frame> R  I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  *  T  H  *  *  F  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  T  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  *  F  L  A  H  P  L  P  V  F  S  I  D  D  N  Q  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  Y  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  V  G  S  L  C  T  S  E  N  S  Y  P  S  S  S  Q  T  K  P  K  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  R  G  E  Y  P  I  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  R  E  D  L </first_frame>
            <second_frame>  E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  V  P  Y  F  R  H  I  S  S  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  I  I  S  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  F  W  H  I  R  C  P  Y  F  Q  L  M  I  T  K  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  S  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  E  S  H  S  I  R  G  Y  R  K  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  G  K  I   </second_frame>
            <third_frame>   N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  F  L  I  L  D  T  L  V  V  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  N  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  I  S  S  V  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  V  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  N  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  L  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  L  S  F  F  F  T  N  K  T  E  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  R  A  I  L  *  G  G  I  E  K  G  R  V  P  D  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  Q  G  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79771" stop="80109"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYIISKYDHKEIQIWLKNPVHQTHERSRGIRKTKRHHYKFVMPIPGSKSSFWHIRCPYFQLMITKSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="82314" PGL_stop="79734"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82314" e_stop="80124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="82314" e_stop="80124" e_length="2191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82314" stop="80124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82314" stop="80889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82250" stop="81695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGTAGCGGCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGATGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAAAGAGGATCAATCAGGTTCTTGCGTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGGTTCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATTTTCCATTGGAAATAGGCACGTTTCCTCGTCTAACTACAGTGCCTATAATGACAAATGATCAACATGAACTCTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTTTTATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACTGAGGCACCACCTATGACTTGGGCATCATTCTCTAGTTTGTTTATGGAGAAGTATATACCCCGCACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCATTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGATGTGGTAGACTTCGTGATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCGCCATGACAACTACATCAAAAAGGTTCCGAAACGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCAGAGGTTATGCAGTTTGATCCATTTAGTCTTCACTACAGACTGTAATTATAGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGCTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGCTGGTCGAGGTAATGGTGGTCACCCAAACGGCCTGGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAAACAAACGAAAGGGCCTATTGTTATGCTTTCCCTGGGTGGTCAGAAGCGGAGACATCAGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGATTCTGTATTGTTTGATCCTGGATCCACATTTTCATATGTATCTTCCGCATTTGCTAATAGTCTTGATTTACATTGTGAATAGCTTGACATACCTATTCATGTGTCTACTCTGGTGGGTGAGTCTGTAATAGTTGAAAGGATATATAGGTCTTGTTTGGTGAATTTCGTGGGGAACAATACTTATGTAGACTTGGTTATCTTAAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGACACATCTAAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTTTTGATGTGTTCCCTGCAGATCTTCCCTGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAATCGGGTACTCGCCCCTTTTCTATACCCCCTTATAGAATGGCTCTCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTTCGGTTTTGTTTGTGAAGAAGAAGGATAGGAGTTTTCGGATGTGCATAGACTACCGACAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATA</gDNA_template>
            <first_frame> K  S  S  G  K  R  P  W  *  R  S  W  E  D  V  L  *  R  K  R  M  S  T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  T  S  T  E  *  G  I  A  S  P  T  Y  P  K  E  D  Q  S  G  S  C  V  S  *  W  V  I  *  S  R  S  N  T  S  S  V  F  C  T  S  T  S  G  F  G  G  T  T  C  G  Y  C  G  S  P  H  G  F  S  I  G  N  R  H  V  S  S  S  N  Y  S  A  Y  N  D  K  *  S  T  *  T  L  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  L  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  *  G  T  T  Y  D  L  G  I  I  L  *  F  V  Y  G  E  V  Y  T  P  H  F  E  G  *  E  K  R  *  V  L  E  P  R  A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  K  V  C  H  P  T  L  F  H  S  T  R  A  D  S  P  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  G  Y  S  E  I  F  S  R  C  G  R  L  R  D  R  G  R  G  S  E  A  R  *  L  R  H  D  N  Y  I  K  K  V  P  K  R  R  *  V  *  W  F  L  L  *  R  T  G  F  Q  R  L  C  S  L  I  H  L  V  F  T  T  D  C  N  Y  R  S  T  S  D  R  S  T  L  L  *  E  T  Y  A  *  L  *  R  V  L  W  M  W  G  D  W  T  Y  *  E  E  L  S  Q  T  E  L  *  T  P  N  S  *  S  *  R  W  S  W  *  R  P  L  F  W  R  T  C  W  S  R  *  W  W  S  P  K  R  P  G  *  W  A  N  W  S  H  Y  I  T  T  W  *  G  Q  Q  T  N  K  R  K  G  L  L  L  C  F  P  W  V  V  R  S  G  D  I  R  C  C  H  H  R  *  S  S  G  L  *  L  H  G  F  C  I  V  *  S  W  I  H  I  F  I  C  I  F  R  I  C  *  *  S  *  F  T  L  *  I  A  *  H  T  Y  S  C  V  Y  S  G  G  *  V  C  N  S  *  K  D  I  *  V  L  F  G  E  F  R  G  E  Q  Y  L  C  R  L  G  Y  L  K  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  T  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  F  D  V  F  P  A  D  L  P  C  M  P  P  D  R  D  I  D  F  C  I  D  L  E  S  G  T  R  P  F  S  I  P  P  Y  R  M  A  L  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  S  V  L  F  V  K  K  K  D  R  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  </first_frame>
            <second_frame>  R  V  A  A  R  G  R  G  R  G  R  G  R  T  S  S  R  G  R  G  *  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  K  R  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  G  S  E  V  Q  H  A  A  T  A  A  P  R  M  D  F  P  L  E  I  G  T  F  P  R  L  T  T  V  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  F  Y  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  I  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  D  V  V  D  F  V  I  E  V  E  G  V  K  P  D  D  F  A  M  T  T  T  S  K  R  F  R  N  G  G  E  F  N  G  S  Y  S  R  G  Q  G  S  R  G  Y  A  V  *  S  I  *  S  S  L  Q  T  V  I  I  G  P  P  Q  T  G  Q  H  F  S  E  R  P  M  L  D  S  R  E  C  Y  G  C  G  E  T  G  H  I  R  R  N  C  P  K  Q  S  Y  R  P  P  I  A  R  A  R  G  G  H  G  R  G  R  Y  S  G  G  R  A  G  R  G  N  G  G  H  P  N  G  L  G  D  G  Q  T  G  A  T  T  S  Q  H  G  R  G  N  R  Q  T  N  E  R  A  Y  C  Y  A  F  P  G  W  S  E  A  E  T  S  D  A  V  I  T  G  N  L  L  V  C  D  C  M  D  S  V  L  F  D  P  G  S  T  F  S  Y  V  S  S  A  F  A  N  S  L  D  L  H  C  E  *  L  D  I  P  I  H  V  S  T  L  V  G  E  S  V  I  V  E  R  I  Y  R  S  C  L  V  N  F  V  G  N  N  T  Y  V  D  L  V  I  L  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  R  I  L  R  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  *  H  I  *  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  L  M  C  S  L  Q  I  F  P  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  S  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  I  G  V  F  G  C  A  *  T  T  D  S  *  T  R  *  P  *  R  T  S  I  L  F  L  A  L  I </second_frame>
            <third_frame>   E  *  R  Q  E  A  V  V  E  V  V  G  G  R  P  L  E  E  E  D  E  H  L  A  H  L  I  L  G  R  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  N  K  Y  R  M  R  D  C  L  P  N  L  P  Q  R  G  S  I  R  F  L  R  I  L  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  H  Q  H  L  R  V  R  R  Y  N  M  R  L  L  R  L  P  A  W  I  F  H  W  K  *  A  R  F  L  V  *  L  Q  C  L  *  *  Q  M  I  N  M  N  S  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  T  F  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  L  R  H  H  L  *  L  G  H  H  S  L  V  C  L  W  R  S  I  Y  P  A  L  *  G  I  G  K  E  M  S  S  *  A  *  S  K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  Q  G  M  P  P  N  F  V  S  F  H  K  S  G  F  A  V  L  *  R  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  R  L  Q  R  N  L  F  K  M  W  *  T  S  *  *  R  *  R  E  *  S  Q  M  T  S  P  *  Q  L  H  Q  K  G  S  E  T  E  V  S  L  M  V  L  T  L  E  D  R  V  P  E  V  M  Q  F  D  P  F  S  L  H  Y  R  L  *  L  *  V  H  L  R  P  V  N  T  S  L  R  D  L  C  L  T  L  E  S  V  M  D  V  G  R  L  D  I  L  G  G  I  V  P  N  R  V  I  D  P  Q  *  L  E  L  E  V  V  M  V  E  A  V  I  L  E  D  V  L  V  E  V  M  V  V  T  Q  T  A  W  V  M  G  K  L  E  P  L  H  H  N  M  V  G  A  T  D  K  Q  T  K  G  P  I  V  M  L  S  L  G  G  Q  K  R  R  H  Q  M  L  S  S  Q  V  I  F  W  F  V  I  A  W  I  L  Y  C  L  I  L  D  P  H  F  H  M  Y  L  P  H  L  L  I  V  L  I  Y  I  V  N  S  L  T  Y  L  F  M  C  L  L  W  W  V  S  L  *  *  L  K  G  Y  I  G  L  V  W  *  I  S  W  G  T  I  L  M  *  T  W  L  S  *  N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  E  F  C  D  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  D  T  S  K  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  P  *  V  F  *  C  V  P  C  R  S  S  L  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  I  G  Y  S  P  L  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  F  G  F  V  C  E  E  E  G  *  E  F  S  D  V  H  R  L  P  T  V  E  Q  G  N  H  K  E  Q  V  S  S  S  S  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82250" stop="81306"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APSPSDTRAVTPPPTEEVVREGEEGETEQVQNEGLPPQPTPKRINQVLAYLSGLSDQGQTPPVFSAPAPQGSEVQHAATAAPRMDFPLEIGTFPRLTTVPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDFYELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVTAYEAKFRALSRYATQLCFIPQERIRRFVKGLRSELRISALQVAATAKSFQDVVDFVIEVEGVKPDDFAMTTTSKRFRNGGEFNGSYSRGQGSRGYAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80760" stop="80125"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLFGEFRGEQYLCRLGYLKMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLTHLKDDTTQVPSIESVSVVREFFDVFPADLPCMPPDRDIDFCIDLESGTRPFSIPPYRMALAELRELKAQLQELLSKGFIRPSASPWGASVLFVKKKDRSFRMCIDYRQLNKVTIKNKYPLPRID</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81296" stop="80826"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLQTVIIGPPQTGQHFSERPMLDSRECYGCGETGHIRRNCPKQSYRPPIARARGGHGRGRYSGGRAGRGNGGHPNGLGDGQTGATTSQHGRGNRQTNERAYCYAFPGWSEAETSDAVITGNLLVCDCMDSVLFDPGSTFSYVSSAFANSLDLHCE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="82284" e_stop="81412"/>
            <exon e_start="80297" e_stop="79734"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.924"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="82284" e_stop="81412" e_length="873"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81411" i_stop="80298" i_length="1114"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="80297" e_stop="79734" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82284" stop="81412"/>
              <exon start="80297" stop="79734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82250" stop="81695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTGGGAGGACGTCCTCTAGAGGAAGAGGATGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAAAGAGGATCAATCAGGTTCTTGCGTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGGTTCGGAGGTACAACATGCGGCTACTGCGGCTCCCCGCATGGATTTTCCATTGGAAATAGGCACGTTTCCTCGTCTAACTACAGTGCCTATAATGACAAATGATCAACATGAACTCTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTTTTATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACTGAGGCACCACCTATGACTTGGGCATCATTCTCTAGTTTGTTTATGGAGAAGTATATACCCCGCACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCATTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAGATGTGGTAGACTTCGTGATAGAGGTAGAGGGAGTGAA : AAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTTCGGTTTTGTTTGTGAAGAAGAAGGATAGGAGTTTTCGGATGTGCATAGACTACCGACAGTTGAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATAATTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATTTGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAAACTACTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGATTTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTACTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGTTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</gDNA_template>
            <first_frame> S  W  E  D  V  L  *  R  K  R  M  S  T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  T  S  T  E  *  G  I  A  S  P  T  Y  P  K  E  D  Q  S  G  S  C  V  S  *  W  V  I  *  S  R  S  N  T  S  S  V  F  C  T  S  T  S  G  F  G  G  T  T  C  G  Y  C  G  S  P  H  G  F  S  I  G  N  R  H  V  S  S  S  N  Y  S  A  Y  N  D  K  *  S  T  *  T  L  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  L  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  *  G  T  T  Y  D  L  G  I  I  L  *  F  V  Y  G  E  V  Y  T  P  H  F  E  G  *  E  K  R  *  V  L  E  P  R  A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  K  V  C  H  P  T  L  F  H  S  T  R  A  D  S  P  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  G  Y  S  E  I  F  S  R  C  G  R  L  R  D  R  G  R  G  S  E  :  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  I  G  V  F  G  C  A  *  T  T  D  S  *  T  R  *  P  *  R  T  S  I  L  F  L  A  L  I  I  C  S  I  S  Y  K  V  L  V  S  S  L  R  L  T  *  D  L  V  I  I  N  *  K  Y  G  Q  R  M  C  Q  K  L  L  L  E  P  G  M  G  I  T  N  L  *  *  C  L  L  V  L  R  M  P  L  L  R  S  *  V  *  *  T  G  F  L  S  H  I  W  I  S  L  *  S  Y  L  L  M  I  Y  *  Y  T  L  K  V  R  R  N  M  R  S  I  *  E  W  Y  W  K  C  *  G  R  K  S  F  M  P  S  S  L  S  V  S  F  G  *  M  Q  C  P  S  W  G  T  W  F  L </first_frame>
            <second_frame>  R  G  R  T  S  S  R  G  R  G  *  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  K  R  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  G  S  E  V  Q  H  A  A  T  A  A  P  R  M  D  F  P  L  E  I  G  T  F  P  R  L  T  T  V  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  F  Y  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  I  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  D  V  V  D  F  V  I  E  V  E  G  V  K :   S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  F  G  F  V  C  E  E  E  G  *  E  F  S  D  V  H  R  L  P  T  V  E  Q  G  N  H  K  E  Q  V  S  S  S  S  H  *  *  F  V  R  S  V  T  R  C  L  C  L  L  *  D  *  L  E  I  W  L  S  S  I  E  N  T  G  N  G  C  A  K  N  Y  F  *  N  Q  V  W  A  L  R  I  C  S  D  V  F  W  S  Y  E  C  P  C  C  V  H  E  F  D  E  R  D  F  *  A  I  F  G  S  L  C  D  R  I  Y  *  *  Y  T  D  I  L  *  K  *  G  G  T  *  G  A  F  E  N  G  I  G  N  V  E  G  E  K  V  L  C  Q  V  L  *  V  *  V  L  A  R  C  S  V  L  L  G  A  R  G  F   </second_frame>
            <third_frame>   V  G  G  R  P  L  E  E  E  D  E  H  L  A  H  L  I  L  G  R  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  N  K  Y  R  M  R  D  C  L  P  N  L  P  Q  R  G  S  I  R  F  L  R  I  L  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  H  Q  H  L  R  V  R  R  Y  N  M  R  L  L  R  L  P  A  W  I  F  H  W  K  *  A  R  F  L  V  *  L  Q  C  L  *  *  Q  M  I  N  M  N  S  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  T  F  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  L  R  H  H  L  *  L  G  H  H  S  L  V  C  L  W  R  S  I  Y  P  A  L  *  G  I  G  K  E  M  S  S  *  A  *  S  K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  Q  G  M  P  P  N  F  V  S  F  H  K  S  G  F  A  V  L  *  R  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  R  L  Q  R  N  L  F  K  M  W  *  T  S  *  *  R  *  R  E  *   : K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  S  V  L  F  V  K  K  K  D  R  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  N  L  F  D  Q  L  Q  G  A  C  V  F  S  K  I  D  L  R  F  G  Y  H  Q  L  K  I  R  A  T  D  V  P  K  T  T  F  R  T  R  Y  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  A  P  A  A  F  M  S  L  M  N  G  I  F  K  P  Y  L  D  L  F  V  I  V  F  T  D  D  I  L  I  Y  S  K  S  K  E  E  H  E  E  H  L  R  M  V  L  E  M  L  R  E  K  K  F  Y  A  K  F  S  K  C  E  F  W  L  D  A  V  S  F  L  G  H  V  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82250" stop="81412"/>
                    <exon start="80297" stop="80258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APSPSDTRAVTPPPTEEVVREGEEGETEQVQNEGLPPQPTPKRINQVLAYLSGLSDQGQTPPVFSAPAPQGSEVQHAATAAPRMDFPLEIGTFPRLTTVPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDFYELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVTAYEAKFRALSRYATQLCFIPQERIRRFVKGLRSELRISALQVAATAKSFQDVVDFVIEVEGVKSPTSRVVEQRLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="81649" e_stop="81449"/>
            <exon e_start="80705" e_stop="80177"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.900"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="81649" e_stop="81449" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81448" i_stop="80706" i_length="743"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="80705" e_stop="80177" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81649" stop="81449"/>
              <exon start="80705" stop="80177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCATTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTTCAAG : AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGACACATCTAAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTTTTGATGTGTTCCCTGCAGATCTTCCCTGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAATCGGGTACTCGCCCCTTTTCTATACCCCCTTATAGAATGGCTCTCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTTCGGTTTTGTTTGTGAAGAAGAAGGATAGGAGTTTTCGGATGTGCATAGACTACCG</gDNA_template>
            <first_frame> G  K  E  M  S  S  *  A  *  S  K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  Q  G  M  P  P  N  F  V  S  F  H  K  S  G  F  A  V  L  *  R  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  R  L  Q  R  N  L  F  K  :  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  R  I  L  R  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  *  H  I  *  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  L  M  C  S  L  Q  I  F  P  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  S  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  I  G  V  F  G  C  A  *  T  T  </first_frame>
            <second_frame>  E  K  R  *  V  L  E  P  R  A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  K  V  C  H  P  T  L  F  H  S  T  R  A  D  S  P  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  G  Y  S  E  I  F  S  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  E  F  C  D  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  D  T  S  K  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  P  *  V  F  *  C  V  P  C  R  S  S  L  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  I  G  Y  S  P  L  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  F  G  F  V  C  E  E  E  G  *  E  F  S  D  V  H  R  L  P </second_frame>
            <third_frame>   K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  I  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  T  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  F  D  V  F  P  A  D  L  P  C  M  P  P  D  R  D  I  D  F  C  I  D  L  E  S  G  T  R  P  F  S  I  P  P  Y  R  M  A  L  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  S  V  L  F  V  K  K  K  D  R  S  F  R  M  C  I  D  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81647" stop="81449"/>
                    <exon start="80705" stop="80179"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRDEFLSLEQGRMSVTAYEAKFRALSRYATQLCFIPQERIRRFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLTHLKDDTTQVPSIESVSVVREFFDVFPADLPCMPPDRDIDFCIDLESGTRPFSIPPYRMALAELRELKAQLQELLSKGFIRPSASPWGASVLFVKKKDRSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="80596" PGL_stop="82314"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80596" e_stop="82314"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="80596" e_stop="82314" e_length="1719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80596" stop="80920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80807" stop="82314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTTAAGATAACCAAGTCTACATAAGTATTGTTCCCCACGAAATTCACCAAACAAGACCTATATATCCTTTCAACTATTACAGACTCACCCACCAGAGTAGACACATGAATAGGTATGTCAAGCTATTCACAATGTAAATCAAGACTATTAGCAAATGCGGAAGATACATATGAAAATGTGGATCCAGGATCAAACAATACAGAATCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCTGATGTCTCCGCTTCTGACCACCCAGGGAAAGCATAACAATAGGCCCTTTCGTTTGTTTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCAGGCCGTTTGGGTGACCACCATTACCTCGACCAGCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTAGCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCTATAATTACAGTCTGTAGTGAAGACTAAATGGATCAAACTGCATAACCTCTGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCGTTTCGGAACCTTTTTGATGTAGTTGTCATGGCGAAGTCATCTGGCTTCACTCCCTCTACCTCTATCACGAAGTCTACCACATCTTGAAAAGATTTCGCTGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGATCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGAATGAAACAAAGTTGGGTGGCATACCTTGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTGCGGGGTATATACTTCTCCATAAACAAACTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCAGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATAAAAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAGAGTTCATGTTGATCATTTGTCATTATAGGCACTGTAGTTAGACGAGGAAACGTGCCTATTTCCAATGGAAAATCCATGCGGGGAGCCGCAGTAGCCGCATGTTGTACCTCCGAACCCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTAAGATACGCAAGAACCTGATTGATCCTCTTTGGGGTAGGTTGGGGAGGCAATCCCTCATTCTGTACTTGTTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCATCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTT</gDNA_template>
            <first_frame> R  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  R  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  K  I  T  K  S  T  *  V  L  F  P  T  K  F  T  K  Q  D  L  Y  I  L  S  T  I  T  D  S  P  T  R  V  D  T  *  I  G  M  S  S  Y  S  Q  C  K  S  R  L  L  A  N  A  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  S  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  V  S  A  S  D  H  P  G  K  A  *  Q  *  A  L  S  F  V  C  L  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  G  *  P  P  L  P  R  P  A  R  P  P  E  *  R  P  L  P  *  P  P  L  A  L  A  I  G  G  L  *  L  C  L  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  I  I  T  V  C  S  E  D  *  M  D  Q  T  A  *  P  L  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  V  V  M  A  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  *  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  M  K  Q  S  W  V  A  Y  L  D  N  A  R  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  K  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  T  V  V  R  R  G  N  V  P  I  S  N  G  K  S  M  R  G  A  A  V  A  A  C  C  T  S  E  P  *  G  A  G  A  E  N  T  G  G  V  *  P  *  S  D  N  P  L  R  Y  A  R  T  *  L  I  L  F  G  V  G  W  G  G  N  P  S  F  C  T  C  S  V  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  H  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  T  L </first_frame>
            <second_frame>  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  L  R  *  P  S  L  H  K  Y  C  S  P  R  N  S  P  N  K  T  Y  I  S  F  Q  L  L  Q  T  H  P  P  E  *  T  H  E  *  V  C  Q  A  I  H  N  V  N  Q  D  Y  *  Q  M  R  K  I  H  M  K  M  W  I  Q  D  Q  T  I  Q  N  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  L  M  S  P  L  L  T  T  Q  G  K  H  N  N  R  P  F  R  L  F  V  C  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  P  G  R  L  G  D  H  H  Y  L  D  Q  H  V  L  Q  N  N  G  L  Y  H  D  H  L  *  L  *  L  L  G  V  Y  N  S  V  W  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  *  S  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  L  *  L  Q  S  V  V  K  T  K  W  I  K  L  H  N  L  W  N  P  V  L  *  S  K  N  H  *  T  H  L  R  F  G  T  F  L  M  *  L  S  W  R  S  H  L  A  S  L  P  L  P  L  S  R  S  L  P  H  L  E  K  I  S  L  *  P  L  P  V  R  L  K  S  A  T  L  I  S  T  P  S  Q  N  G  E  S  A  L  V  E  *  N  K  V  G  W  H  T  L  I  M  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  K  C  G  V  Y  T  S  P  *  T  N  *  R  M  M  P  K  S  *  V  V  P  Q  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  K  S  Q  P  E  N  H  R  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  R  V  H  V  D  H  L  S  L  *  A  L  *  L  D  E  E  T  C  L  F  P  M  E  N  P  C  G  E  P  Q  *  P  H  V  V  P  P  N  P  E  V  L  V  Q  K  T  L  E  V  F  D  L  D  Q  I  T  H  *  D  T  Q  E  P  D  *  S  S  L  G  *  V  G  E  A  I  P  H  S  V  L  V  Q  F  P  L  P  H  P  L  L  L  L  L  Q  S  V  E  E  S  P  P  *  Y  Q  M  G  *  V  L  I  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L   </second_frame>
            <third_frame>   D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  *  D  N  Q  V  Y  I  S  I  V  P  H  E  I  H  Q  T  R  P  I  Y  P  F  N  Y  Y  R  L  T  H  Q  S  R  H  M  N  R  Y  V  K  L  F  T  M  *  I  K  T  I  S  K  C  G  R  Y  I  *  K  C  G  S  R  I  K  Q  Y  R  I  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  *  C  L  R  F  *  P  P  R  E  S  I  T  I  G  P  F  V  C  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  Q  A  V  W  V  T  T  I  T  S  T  S  T  S  S  R  I  T  A  S  T  M  T  T  S  S  S  S  Y  W  G  S  I  T  L  F  G  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  R  V  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  Y  N  Y  S  L  *  *  R  L  N  G  S  N  C  I  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  V  S  E  P  F  *  C  S  C  H  G  E  V  I  W  L  H  S  L  Y  L  Y  H  E  V  Y  H  I  L  K  R  F  R  C  S  R  Y  L  *  G  *  N  P  Q  L  *  S  Q  P  L  H  K  T  A  N  P  L  L  W  N  E  T  K  L  G  G  I  P  *  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  Q  S  A  G  Y  I  L  L  H  K  Q  T  R  E  *  C  P  S  H  R  W  C  L  S  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  I  K  V  N  Q  K  I  I  G  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  E  F  M  L  I  I  C  H  Y  R  H  C  S  *  T  R  K  R  A  Y  F  Q  W  K  I  H  A  G  S  R  S  S  R  M  L  Y  L  R  T  L  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  *  P  T  K  I  R  K  N  L  I  D  P  L  W  G  R  L  G  R  Q  S  L  I  L  Y  L  F  S  F  P  F  L  T  L  S  Y  Y  F  F  S  R  W  R  S  H  R  P  S  I  R  W  A  R  C  S  S  S  S  S  R  G  R  P  P  T  T  S  T  T  A  S  C  R  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81454" stop="81735"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDFAVAATCKAEIRNSDLNPFTKRRIRSCGMKQSWVAYLDNARNLASYAVTDILPCSRLKNSSLFLSLKVRGIYFSINKLENDAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81036" stop="81290"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITQAVWVTTITSTSTSSRITASTMTTSSSSYWGSITLFGTIPPNMSSLPTSITLSRVKHRSLREVLTGLRWTYNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82092" stop="82313"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTKIRKNLIDPLWGRLGRQSLILYLFSFPFLTLSYYFFSRWRSHRPSIRWARCSSSSSRGRPPTTSTTASCRYS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0305L18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82117" stop="82314"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILFGVGWGGNPSFCTCSVSPSSPSLTTSSVGGGVTALVSDGLGAHPLPLEDVLPRPLPRPLAATL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 95 chains have been computed
$ 
$ memory statistics:
$ 24456 bytes spliced alignments in total
$ 11 spliced alignments have been stored
$ 2223 bytes was the average size of a spliced alignment
$ 11648 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1941 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 118 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:26:23
-->
