<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:22:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286708" ref_strand="+" ref_description="SGN-E286708 [cLES-14-D9]">
      <seq>tcgcgaggtccgtcatggtcacgacggaccgtcatggactccgtcgtcccatacttatgcaatttcttttgttgctcttcttcattaccctcaacggcaagtatggcggaccgtcataggcacaacggtccgtcgagggccttcgttccaaaacactttaactcttggaatatgggtactgggattacttctctgaacttcatgacgaacctgtaggacggaccgtcatagacacgatggaccgtcacaagcttcgtaaccccatacttggtcagacttccccatcttccttcagcagctgcactacgctgacacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaataaaaagaaactaatatagaaattagcacaaaaaggattttagacacactaaacttaaggaaaaagtattaataataccatgaaaccacggtatatcacttggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="14657" stop="15780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14957" g_stop="15472" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-E286708" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14957" e_stop="15472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGACGGATCATCATGGTCACGATGGACCGTCATGGACTCCGTCATCTCATACTTATGCAATTTCTTCAGCTGCTCTTCTTCATTACCCTCGAAGGCAAGTACGACGGACCGTCATAGGCACAACGGTCCGTTGAGGGTCTTCGTTCCAAAACACTTCAACTCTTGGAAAATGGGTACTGGGATTATTTCTCTGAACTTCATGACGAACCTGCAGGACGGACCGTCATAGACACGACGAACCGTCACAAGCTTTGTAGCCCCACACTTGTTCAGACTTCCCCATCTTCCTTCAGCAACTGCACTACGCTGCCACCTACGGAACGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTGGCTCAAAATCTCCGCGTTCAGCTTTGGACAGATTTCCTGCAAAACAAAAAGAAACTTATATAAAAATTAGCGTAAAATGGGTTTTGGACACACTAAACATAAGGAAAAAGTATTAATAATACTGTGAAACCACG</genome_strand>
        <mrna_strand>TCGCGA-GGTCCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTTTGTTGCTCTTCTTCATTACCCTCAACGGCAAGTATGGCGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTCCAAAACACTTTAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGTAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAACCCCATACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTAATATAGAAATTAGCACAAAAAGGATTTTAGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="14792" stop="16105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15091" g_stop="15805" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15091" e_stop="15805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGGTCTTCGTTCCAAAACACTTCAACTCTTGGAAAATGGGTACTGGGATTATTTCTCTGAACTTCATGACGAACCTGCAGGACGGACCGTCATAGACACGACGAACCGTCACAAGCTTTGTAGCCCCACACTTGTTCAGACTTCCCCATCTTCCTTCAGCAACTGCACTACGCTGCCACCTACGGAACGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTGGCTCAAAATCTCCGCGTTCAGCTTTGGACAGATTTCCTGCAAAACAAAAAGAAACTTATATAAAAATTAGCGTAAAATGGGTTTTGGACACACTAAACATAAGGAAAAAGTATTAATAATACTGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCATTTTTTGTCCTCAAGCGACGCACTATGACTCAATACAAAATCTTTGTACAATAGTATACATGTTTTATCCTTTGCAATCGTTTGGATATCAATTCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTATGTGGGATTGGAACATGACACAGACTCACCATGCACTAACACCTATTCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTGGTATTGCAACTAGTGTCCTCACTTTAA-ACAAAATCCTCATTTTTTACACAATGATTTCAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="-" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="93174" stop="91860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92874" g_stop="92160" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="-" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92874" e_stop="92160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTC-TCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACT-GGATCACCTCTTCTATCTCCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCATAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACAGGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTCTCTCAAAATCTCCGCATTCAGCTTTAGACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTATACAATCTTTGTACAATAGTATTCATGTTTTTATCCTTTGCAATCATTTGGCTACCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATTCGAACATGACACAGACTCAACATGCACTAACA-CTATTCTCTTCAATTTCTCACCGAGAGGCTAACAATTCCGGTATAGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAA-GGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATG-TTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577891" ref_strand="+" ref_description="SGN-E577891 [LE08BA04]">
      <seq>ttcgtttcaaaatacttcagctcttggaatctgggtactggaatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaatcttcgtaatcccacacttggtgagacttccccatcttccttcagcagcttctctacgctgccacctacggagcgtcaaaggcacgatggaccgtcataagctcagtaggtggtctcttctacattttttcgctcaaaatctctgctttcagctttggacagatttcctgcaaaataaagagaaacttataccaaaattagcacaaaaaggcttacggacacactaaacttaaggcaaaagtattaattataccgtgaaaccacggtatatcagggacatgaactcgaaggccattgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="-" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="93166" stop="53315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92867" g_stop="92457" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="-" ref_id="SGN-E577891" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92867" e_stop="92457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGG-ATCACCTCTTCTATCTCCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCATAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACAGGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTCTCTCAAAATCTCCGCATTCAGCTTTAGACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTC</genome_strand>
        <mrna_strand>TTCGTTTCAAAATACTTCAGCTCTTGGAATCTGGGTACTGGAATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAATCTTCGTAATCCCACACTTGGTGAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGAGCGTCAAAGGCACGATGGACCGTCATAAGCTCAGTAGGTGGTCTCTTCTACATTTTTTCGCTCAAAATCTCTGCTTTCAGCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATACCAAAATTAGCACAAAAA-GGCTTACGGACACACTAAACTTAAGGCAAAAGTATTAATTATACCGTGAAACCACGGTATATCAGGGACATGAACTCGAAGGCCATTGTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243969" ref_strand="+" ref_description="SGN-E243969 [cLEE-1-A19]">
      <seq>ggaaatctgccaaaacgcggcttggtcgacggaccacgcgacggaccgtcgtggactctgtcgtcccatacttggtgcaatttcttctgctgctttcttcattcccctcgacggcaagtgtaacggaccgtcataggtacaacggtctgtcgagggtcttcgtttcaaaatacttcaactcttggaatctgggtactgggatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaagcttcgtaatcccacacttggtcagacttccccatcttccttcagcagcttctctacgctaccacctacggaccgtcacaagcacgacagaccttcaaaagctccgtaggtggtctcttctgcatttttttgctcaaaatctccgctttcagcttttgacagatttcctgcaaaacaaagagaaacttatatcaaaattagcacaaaaaaggctttcggacactttaaacttaaggcaaaagtattaattatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="-" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="93341" stop="92205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93005" g_stop="92505" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="522" r_length="504" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="-" ref_id="SGN-E243969" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93005" e_stop="92505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGACGGACCGTCGTGGTCATGACGGACCGCCGTGGACTCCGTCGTCCCATACTTGGTGCAA-TTCTTCTGCTGCTTTCTTCATTCCCCTCGACGGCAAGTGTGACGGACCGTCATAAGCACAACGGTCCATCGAGGGTC-TCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACT-GGATCACCTCTTCTATCTCCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCATAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACAGGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTCTCTCAAAATCTCCGCATTCAGCTTTAGACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACC</genome_strand>
        <mrna_strand>GGCTTGGTCGACGGACCACGCGACGGACCGTCGTGGACTCTGTCGTCCCATACTTGGTGCAATTTCTTCTGCTGCTTTCTTCATTCCCCTCGACGGCAAGTGTAACGGACCGTCATAGGTACAACGGTCTGTCGAGGGTCTTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTACCACCTACGGACCGTCACAAGCACGACAGACCTTCAAAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTTGCTCAAAATCTCCGCTTTCAGCTTTTGACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAAGGCTTTCGGACACTTTAAACTTAAGGCAAAAGTATTAATTATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487689" ref_strand="+" ref_description="SGN-E487689 [cSTE-26-E24]">
      <seq>ggagatatggtgcaacgtcgggcatttcaaaagttgatatatgtctcaactattgtatttggagaagcatctgctttccttttaccttggaaacgtgttttcaaggttactgatgcccaggttgatgttgctgtcagggacaatgcacaacggttgtatgcctccaagcttaagtctgttgggagagatattgatgtgaaccagctgatcagtttgagagaagcacagcttgcatatcgattgtccgacgagcttgcacatgagatgtttaaggagcatgcaagaaatcttgttgaggaaatcatatcaactgctgttggcatattgaagtcaaggacaagagcaacggaacccacacgtgtcattgaggaacttgataaggtattgtcatataataatttgttaatctcactgaagaaccatgctgatgctagtcgttttgctcctggcactgggccagtttccttagtaggaggggagtatgatggtgataggaagatggatgacctaaaacttctctacagagcatatgttacagattctttgtcaagtggtcggatggaagaagacaagcttgctgctttgaaccaattgagaaatatatttggtttggggaaacgagaagcagatacaatcacattggatgtcacctcaaaggtataccgtaaacgacttgctcaagctgttaccagtggtgaattagaagcattcgagagcaaagcagcctatctttcaaatctttgtgaagaatttaatttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="120264" stop="131789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120467" g_stop="120487" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120488" i_stop="120584" i_length="97">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120585" g_stop="120683" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="120" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120684" i_stop="120895" i_length="212">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120896" g_stop="120962" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="187" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120963" i_stop="121623" i_length="661">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121624" g_stop="121688" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="252" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121689" i_stop="121871" i_length="183">
            <donor d_prob="0.935" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121872" g_stop="121966" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="347" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121967" i_stop="122151" i_length="185">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122152" g_stop="122276" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="472" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122277" i_stop="122456" i_length="180">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122457" g_stop="122557" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="573" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="122558" i_stop="131305" i_length="8748">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="131306" g_stop="131495" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="762" r_length="189" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-E487689" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120467" e_stop="120487"/>
          <exon e_start="120585" e_stop="120683"/>
          <exon e_start="120896" e_stop="120962"/>
          <exon e_start="121624" e_stop="121688"/>
          <exon e_start="121872" e_stop="121966"/>
          <exon e_start="122152" e_stop="122276"/>
          <exon e_start="122457" e_stop="122557"/>
          <exon e_start="131306" e_stop="131495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATATGGAGCAACGTCGGGTGGGTCATCTCTTCAAAAAGCTTCAGTTTCCAAAGACTACTGCCTTAAGTTATCGAATAACAACAAATGGAACTTGATCATTTTTGACTTCTCCAGGCATTTCAGAAGTTGATATATGTCTCAACTCTTGTATTTGGAGAATCATCTGCTTTCCTTTTACCTTGGAAACGTGTTTTCAAGGTTACTGATGCCCAGGTAGCGGATTATTTATCACTCTCTCCCTCTTTGTGGAGTATTCAGATTGTGCAGTGGCATGTCCTGCTTGTGTGGTTTTAACATTTCTGTATTTTGATTTGAGGTTCCTGTCATTTGTCTCTTTCCCTGCCCCCTTCATTTATGTAATATTAGATTTCTATATAGTGCGACCCCCTGTGTCCTTTTACTCGTTTTAACATTTTTGCCATTAGGTTGATGTTGCTGTCAGGGACAATGCACAACGGTTGTATGCCTCCAAGCTTAAGTCTGTTGGGCGAGGTAAGTTTTCTCTATTGATGCCTTTGAAGGCACTTTTACTTCTAACGTAACCTATTCATAGGAAACCATTTTACTAGTTTTCTTTTGCATACCTAATTAAACTAATGCTCTTCCAAACTACTTGTCGATATTCTTGGGTATGTTTTCTAAAATTTTCGATCTCTATTAAACTGATTCTAATAAATCTGTATATGTGCTTAAATTTGGCTTTTTTGTGGTATGTGGTGCTTAATCCTGAACAAAGATGAATCATACCATGAGGCTCCACATATGTGGCATGGGTTTAGTATGTTCTATTCATGCACTGAGTAGAGACTTTTTTGAAGTCTTTCTGTCGCTTCAAATTTCTTTGCATTTTAGTGATATATCCTATTGGTTTATGGGTTTTGAGAGCCTTCTGACGATAGCTCTTGAATCTGGACATCTCGTTATTGCTTAGAGTAGAGGGAGTCTTTGTATGATTCCACCAATCTTATATGGAAAATGCTAATTCTTTCATTATCTTCACGAACTCCACTCTTAGTAGCATCTACCTTGAAATTCTATGTTATGGACTTGTGGCGGTGTCAGGGTGATATCACTTGTTTCTTTTCATGATTTAATTCCTGCACTGCACTTCAGTGGTTTTGCATGGTTAATTTAATTACTTTACCTGTTCCAGATATTGATGTGAACCAGCTGATCAGTTTGAGAGAAGCACAGCTTGCATATCGATTGTCCGATGAGGTAGTGCCTAAAAAAATTATCATAATTCTGCTTCATATCCCTGTAGAAATACCTTTTTCTCCTCGAAAAAGGAGATAAGATTGCTATGAATTTGTTGCACAATATTCATGATTGAATTTACTTTGTCCATGTATTCTGTCATCAAATATATGCACAATCATGTCCATTTCTTTCTGTTTGCAGCTTGCACATGAGATGCTTAAGGAGCATGCAAGAAAGCTTGTTGAGGAAATCATATCAACTGCTGTTGGCATATTGAAGTCAAGGACAAGAGCAACGTAAGGTCTTTTAAGTATATTTAACCTCTTAAAAGGGAACTTCCATTTTACTGGATAAATTTTTTACCAAGCAATTCTAGTTAATAGAAATGGGACTGCTCCTATAATTTCTAGCAAGACAGAATGTATCATATTCTTTGCTTGTATCATTTGTTTAATTCAAACTGATTGGGTTTGTTTAGCAGGGAACCCACGCGTGTCATTGAGGAACTTGATAAGGTATTGTCATATAATAATTTGCTAATCTCATTGAAGAACCATGCTGATGCTAGTCGCTTTGCTCCTGGCATTGGGCCAGTTTCCTTAGTAGGTATGTACGTCGATGATCTTGTCTGACTCTTTTTATAGAACTTGTTAGAAGTTGCGGGTTTCTATCAAGTCTCAAGTGAAATCCTTTCATGGAGCTCTTTCTTTCAGCTGTTTTTATCTCAGTTTTTTAGCTGAAGTTAGTTTTCCCTTTTCTTCATTCTTTTTCTTCCTGCTCCTTCAGGAGGGGAGTATGATGGTGATAGGAAGATGGATGACCTAAAACTTCTTTACAGAGCATATGTTACAGATTCTTTGTCAAGTGGTCGGATGGAAGAAGACAAGGTAGGTGGTTTTAATTTCTCTCTGCTTCATTTCTTCTGCTTTTTCAGGTTTTTTGGAATTATTATTTTCTACTTGTTTGCCAAAATGGCCGGAAAATTTGAATCTCTCGTGCATTTGTCAAACTAAAGTTATGTTAAACATATATATGAATGGACTGGAAGTTAAAGGAACATACTCCTTTTCTCTTATCCTGCTTCAATATGTTATTCTGGTATGGTAGGACAATAATGGGTATACTAGTAGATTTGTTTGCCAATGGAAAATGGCTTGTGCCCACCCACTTTTGTCGATAACTGGACAGGAGTAGACACATATTCTTTTCTCTTTTCCAGCTGTTCTGTGGTTGAAATGCTGATATAGAAAGCCAGGATGTCCCTACATTTTACTCCCGTATTTTGTATTTTCTGTCCTCCTGTAATGACCCCTCTATGTTCTATGATGAACTAGAAGCAAAAAATGGATGATGTGGAGAAAAAGCAGAATATTGTGGTTTTGGACCAAAATTACAAGTTGTTGAATCAAGAGTATTGATATGACCTTAATGTTTTGGACACTAGAAAGAGAGTACACTGTGCAAGCTGGTTTAAAGTAAGCTTTGACATTGCCAACTGAGGTTCTTTTATTAATGTGCTCAATGAAATGGCTCTCAAGAGAAAATGGACTAGATGGTTCTTTTTTTTTCCTGAAGTAAGATATGTTAACAAGGCATCAGGTGGATGCAGAGTAGTTGCATAAGAGAGTCATGGTTAACTATGAGAACAAAAACTTCTTTTCTAAGTCAGGGAGTTAACCAGAAAACAAAACCATGATCTCTAAACCATAGTAAGGGAGCTGATGAAATCTAAAAGGAAATTATACCATTTAAAGGGGATAGATTGAGGACAAGATGGATTTATTTTTGCATAAGCACATTTAGTCTTTTTTGGTCAAAACCTTAAATATTTCGTTATGCCCAAAGTATCGAACTTTACAAAACTGCCAACACATTAGACTCAAGTCGGCTCGGCTCCCTTGTACTCTTTCAATACAAACGACTATAAGCAGAACAATTATTTAACAATGTAAAATTAACTTTGAACAATTATCTATAAGCTATTCTGGGAAGTGTTAAGCTGTTCTTACTTTGCTAACCATATGCTGTGTCTTTGTCCCTCTATGTGCACCTGGACTGCTATTTCTCGAAGCCTTCGTGTACAACAGAATCCAAACATTCCTGCTTGCGGTCTGCTATTGCTTTCCTGATTCCAGTCGCCAATAGACCTAGTGTGGTCCAACCATTTCACAAGAAATGGCCTTATGAATGCCGAGTATGGGCAATCAAAAAATAGGTGCTCAGGTGTCTCCTCCACTTGATCATTGCATAGTAAACAATCAGTGGACCCTACTTTTCCCCATTTCTGCACTCTATCCACTGTTGACAGTTTTCTATGTAAAGCCACCATAGAATGAACTACTGCCTTGGGATCTGACCTTGAACCAACACCAATTTACTCCATATGACTTTAAGGTGTTGTGCCATCATTGGCACATACCTTTTCTTTATACTATACTCCTTTGAGTCAATAAGTACTTATAGCTTATTATGTAAGGTACTATAATAAGCAACTCCTGGCATGAAAAATTTCCTCAATTAAGCAGGCCTGTTTAGGAGTTTTCATTCTCTCCAAGTGGCTTTTATATAGAATGTATGTGCCCACAACACCCATTGTTTGTCCTTCTGCTCTACTTGCTAGAGGAGCTTACATATTGCTGCCTTGTTCCATGTAAGTATATCAATCACATTCAGACCCCCTGCTGTCTTGGGCTTACAGTCCGTCTCCCATGCAACCAAGGTATCTTTTGAGAAGTCATTGCTCCCTTCCATGAGAAAGTTTTACTCACTGTTGTAAGCATCGTAATGATCTTCTTTTGTAACAAGAATATTTGGGACCAATATGTTTGCATTTGAAACAACACTCTTCACTAGCTGTAATCTACCACGGTAGGACAACAACTTGGAGGACCAACATTTGATTCTTGCTCATTTTTTCAACTATGGGCAGACACTATTGAATTGAGAGCTTTCTGTTTGAATCTGAGATTGGGACTCCCAAATACTTGAGCGGGAGCCCTCCTAATGATAAGTTCAACTCACAATAATTCTCTCCTTAAATTTAGGAGGGACATCTTAAATATATAAAGAACTTTTCTCCATATTGGCATGCAGGCCTGAGACCTCAGAGAATTGTTTGAAGGTATTAAGCAGTAGCTTAATGGAGTCTTCATTTGACTTACAACTGATTGATATATCATCAGCAAAACATACATGAATAATACCCAACTTACCACATCTTCGATGGTAGTTGAACTGAAGTTGTGCTTCAGCTGTTGAAGTGTTTTGTGCAGATACTCCATGGCTAATACAAACACATATGGTTACATGGGGTCCTCTTGTCTCAACCTTTTGTTGCTTGGAATTGTTGAGTCAGACCACCATTAATCAGCAAGCAATACTATCCTGAGCAATGGCCATCTATTGAGTCATATGCTGTTCTAATGTTCACACTTATAGTATATCTAGGCTAAGTTGCTCGGACTCGAGTGCGGTTATCCGAAACGGATGCGAATTCGATTCTCGGATTCGACTAAATTCAAATTTTAAGATTCGTGGGTGCGAATCCGATTATGGATACGGGTGCGGGGACAACTAATTTTTTTTTAATATTGTAAAAATATAGTTTTATATATACTAAACAAATATATAAATACACAAATACACACACTAAACAACTGCATAAATATAATTTATTTTATAAAAAAGTACACTTATTTCGGGAAAACCTTCGTTTTTAAATAAAAAAGTACACTTATTTCGGGAAAACCTTCGTTTCTGTCGCTTGGAGTTCTTTTTTAAGAAAAAGTGAAAAGACCCAGTACTTTTCTCTGTATTTACTTCGCTTTTTCAAGAAAAAAATTTCTTTCTTCTCTTCTATTCTCTGTATTTCTCAAGCTGGAAACTTATTTTCTCTACTTCCACCTTTTCTCTATACTTTTTCAACGATCGATCGAATCTGACACGCATCCCGCACCCGCGCGTGCACCAGTGTTGCGTTGAGATGGGTTTGCCTGCAAATATGAAGAGTCAGCGCGCTTTTACGTACTGATTTCGAAAATTGAAGGTTTCGAAGCGGATTTCACAACTTTGGCAATTTTTATTAAAATTGTTTTTTGGAAAAACATGTAATTTCAGGAGTCGCCACTTAATTTTTAGAAAAATTAGGAAGACCGTTTTAGAAGGAATTATTTAAAAGAAAACGTTTAAATAAAATCAGTGTTTTGGGTACGGTTCAACTAATTCTCTAAGGAATGGTTTAGGCACCTTAGAGAATCCGCTAACACGCGGTTGACCGACGGATTTTAAAATTGGCTAATTTTAAAAAAAAAACTTAAGAATACTTGAAAAATCTTATTTATTTATTTATTTCAAAGTACTCAAAAATTCTTGTTGAAAACTTAGATAGATATCTTTTGATACTTCTAAAAGTCTCAAGATTTATCTTTAACTTTTGTCCATAGTCATATTTTGAACCATACAAATAATTCAACACATAAACATGAATTATAAGACTTTGTTTAACAACTATGAAAGATCCTTAAGTCATTCATACAAAGTTCTAAGTTAAATTAAAAGACAACTAATTTAGTTTAAGAAACTTAACTATTTTATCCTATTCAAAAATTTGAACTAAATAGTTAGTTCAAACTTGTAAACATGGATTCAAATCTTTTTAATAACTATGAAAGAACATAATAGATTCTTAAGTTATTCTAATAAGCTTAAGCTGTCTAACTTAAAATGAGTCAATGAGTGATAAGAAACAAGAAACGATTTAAAAAATAACATTGATAACTCTAGGGAGGATTCATCTAGTTCAAAGGCGAAACAAACCAAAAAAAAGTTAGTATGATAATAAAAACACCATATAAAAAAAAAGTTAAATGTAAATGAGAATAAAATATGAGCTTCCAGGCCCTTAATCCACTCCTTGTTTGCTGCTGCGCATTTTTCAGTGGACTTTTGAGAGTCCAAAATTATCATTTTCAGCCTTTTCAAGGCTACTGCTGCTGCTGGTTTACTTGGGTTTTTACCCAATAATACTAGTTTCCTTTTATCGACTCAGATGAGGTTAATTCAAAGAGAGGAAAGTGCAGGAAAGGGGGAGTTCCAATCGGACTCAAATCAGGAGAAGTCATGCAAAGAAAACGAAAAATAAAAAAATAAAAATTAGCAAGTGATTTAATAAGACTTATGAACTACAAACCTTAAAGACATATTCAACATCAATAAAGATAACGCATAGGAGTTAGATGATGTCCAACAAATTACTCTCTAATCGAATGCACCTCTTATTTTCCTAATGATCGAACAAGTGCCCATTAAGTTAACCACATAACTAGTTTTCTATTAATCACAATTCAACTTATCAATATAAAAGATTAGAAATGATGATTCGCTTTAAACAAAAGCTAAAAAATGGTTGGATTTGAAAAAGAATGACTAACAGTAAAAGTTGCATCTGACTTAACAGATAAATAATGAAAACAAATCAATACCAACAACTTCAATAAAAGAGTTGGGGAAGAAATCGATATTTGTCATTTTCTCAAAGATATGAATCCCAACAGTAAGTTTATCATGCAACTAAAAAATGAAGGATATTACTCAAATTGAGTCAAAACCTAAGAATTGAAGAAGCAAATATTTAGAGCAAAACTAAAGGCAACATTAAAAGAGCCAACACAAATTAACATTTCCATGAAATCAGATTGTAAGGCCAAGATTAGTGGCATAACCGAGCTTGGCTCTCTCCAAGAAGATTTGAAACTAAAATAGCTCGAATTCTTGTAACTTGATAGGTAATCCAAAGAAAATCCCAAACAAGGATATTATAGCCTTCAGATTTGAACTAAAATCAGAAATTTTAAACCAAAACAAATGACAACTTGGCTATTGGGGGTACAAGTAGTTTGCTGTCACAGGAAAAACAAAAGGAATATAGTAAATACAAAGAGATGCATTCATTTTTTGTAGGAGTAAAAGAAGTATCCAAATCAAGTACCAATCTGTTCTGATAATACAAAGACTAAACCCTTGGAGAGCTTTAACATCCATGGCTAAAAAATGAACAATTAGAATGATATGATTTCACAAGGTAAAACTACTAGACATAACAAGGAAGTAACTCTCTTTTTTAAAGCATACTACGGCTAATGTAAAACAAACGAAACCTTAAGACCACAGATTCATGAAACAGAGCACATCAAGTTGATTTTGAAGAGAAGAGATAAAATAATTGCAAAGATATATGGCAAACGCTTCAGACTCAAACGGATATATGGTCCTAAAGGAAGCAACACTTCAAGAAGATTTAAACTAAAAAAATGTAACACATCTTTCATGAATCTGGAACCATATATAGAAGACAAATGAGACAGAGAACAATCATGCATAAAAATGATACAGTGAAGTCGTCTACTACATATTAGAAAACACACTAACGAATGAAAACTCAAACCATTGCCAAAACGAGTTAACTACTATTTCAATCCCATTTCATATATCACGAGATGAACTAACACTTAACAAAACGAAAGCACAATCACTTCATCAAATGGATTGTGAACCAAAGTAAAGTAAGGGAAGACAGAAAATTACCCTTTCCGGAGCAGCGAACTTGACGAAATGATGAGCAGAGGGCAACAAGCTTTCACCACTAAAACCCGAACTAGACAACGGACGAGAAGCCTAGGCAACAACTAAAACTCGAACCAACTTAAAGAACTACGATGATCGAGCTAGGACGGAAACTACCTCTTCCTTATCTCTTTCAAGTGTATTTCTTATATATCTTATAGCTAATTTGTTGTATCATTCTCTTTCTCTGTTTTGAATTCCCAACCCTTCTCTCAGTGAAGGATCTCCAACCCGAAATGAATAAGAAAGAAGGTATTTATAGGAGGAAATAGGGCAGACTTGGGGGGAAACATATGAGGGTAGAATCGGGCTAAAAAAGAAGGGCCAAAATTTGAATTTCCAAATGGAAATCTATCCAGAGCAAAAGCATATTCCCAATGATTCTTGCAATTTCAACAGATTGAAGGCGAGATTGAGGGGTAAGATCAACCCATCGTCCTTCGAATGCTACGTGGCTCGATCTTGAGGCCACAAGGACGAATTTGCAGCTGGAATCGGCGCTGGAACTGTACTAAGCGTACTGTATGTTGAGGGAAAGGAAGAAGATGACAAGAAAATAATACTGGGTACCGTTGTACGCGTCTGTCGATTGACACCATGTAATCCCCGTCTGTTGGCTGTGAAGACGTTAATAATTCGCTGTCTTGCTACCGTGTACTATTCCGTTTGGCTTGACGCCTTATAGTTGGTGCTTTCGATGGGATTAGAAGGGAAAAGGGAATTGGGTTGGGTCAAAAGGAGTGGGCTGGGATTTCTGGGTTTTGAAATTGATAACATGGGGGTGAGGATTTAGAAAGGATGAGAATTGTTGTTGGAAAAGGGGAATAAATGAATAGGGTCATTTTGAGTATTGGGCTGCAAAATAAAGGCCCTAAAGAGTGACAAAGCTATATTAAATAACTTGAAAAATATTTTGAATTTTACAAAGTTGGTTATTTCAAATAGTTTGGAATTTAAGAAAATCGAAAGTCAATTCCTATCATGGAGGGTCAAAATTAGGTGTCAACAAACGCAACATAACATCTAGGTGACATTCCTTTCTAAGAGTAGCCCTTGACCATCTCACGTGCAGTCAGTACATTATCTAAGATGTTTCTACCCTGGATGAAAGCTGACAAAGGACTAACAATATAGTCCACTACAGTTTTTAGTTTTGGCAGTCAGTATCTTGGCTATAAGCTTATACAGGGTAGTGCAACAATCTATTGGCATTTACTACATATGATGGTGCAGTTACCTTAGGCACAAGTGTGACTGTGGTTGTGTTTACACCTTTTAACTATTTACAATTTTCAAAGAACCGTTTCCTCCCCCTTATTATTTCTCAGAAGTTTTTTAAAATTCTGCAATATAACCATCAATACATGGGCTCTTGTTCACTGGCTTGTCCTTCAAGGCTTTCACCACATCCTGAGTAATCACGGGTTGCAGTAGCTGTTGTTGTTGTTCAACTGTAAGGCAGGGGTCATCTCGAGCTGTGCATGAGTATACAAGGCATGGTTGATGCATCTGGCCCCAACAAAGTTTGAAAGAACGGGAGAAACTCCTGTTGTATCTGTTCTGGATCAGTCAGCTTAGTCCCCTGTTCTGTGTAAATAGAGGATATTTTGTTCGTTGCTCGCCTAGCTTTCAGGTGGACAGATAAGTACTTGTAGTTCCTTCTGCATTAATACCCTTTCGTAAAGACTTCCCCATTTCTCAAAGGTCTGCACTGGTTTCCTCTCTCCATTGATCAAGTCTTGGTTGAGGAGGTGTGTTGCCATTTCAACCTGCCCCTCCTCCATTTCCTCCTGCACTTTCTGGAGTCTTTGCCTCAATTGGATCAATTTCTTTTCTTTTGTCGAAAATTTCCTGGCCTACCTGAAGATGGAGTAAGCTGAAGATCCGTCATATCTGGGCTAATCACTTCTTCCCAGTACTTCAGCCTACCTCTGCCTTTCCTCGTCCCCACTATATCCAACCTCACACATCTCCTCACTGAGGCACTTGTACATCTCCTCTTCACATGCCCAAACCATCTCAGCTTCCCTTCCCTCATCCCACACACCCATCTCAACATTCTCATTTTCGCCACTTGCATTTTCTGTACATGAGAGTTCGACTAGCCAACACTTTCCCCTTACAATAACGCCAGTCTGACCACTACTCTATAGAACTTTTACCTTTAAGTTTCAGTGGTACATTCTTATCGCACAAGACAACGGACGCAAGCCTCCTCTGCATCTATATTCCACCGATACGATGTGTGACATCATCGTTGATATCCCCATTTCCTTGGATCAGAGACCCAAGATACTTAAATCTCTGTTTGGGACAACTTGCATATCAAGTCTCACTTTTATGGCTGCCTCATGCGTCACATCACCCTTTGAACTATTGTGATCTTAAACATGCCATATCATTCCTAAAAATGGAGTGTCATTAAGGGTATAACTGTAATATTGAAATTTAGAACTTATGAAATATAGAAGCAATTTTCTTTTTCATATAGACTAAAAAAAAGAGTAAAACATGTATAAATGAAACAGAGAAATTAACTGATGTGGAGTAATTCAACCTTGTGGAATCTTGGTTTCTGGGTGAAGGCTGGTATAACTACAGATAACAATATCTGGTAATGCGATAATAGAATTCGTTGAATAGCTGCAAGCAGATCAGTTTATGTTCTTCTAAGGCTCTTTGCTTGCAAACCAGTCTATGTTCTTCATTATCACATTAAGGATTACCTTTAGCTTGTTTGGGGGAACAGATTTCTTATTGATGATGAGATGGTTTGTGGGTCTGTTTGGTCTTTAGACCGATACACTCGTAAGGTTTGATCATATGAATCCTTTCCTTTTTAATGAATATGCTCAATTGTTTTGCTTCCTAATGAGTTTTCACTTATGTTACATGCCATGGAATCATCCAGATGCTATAGTATTCTCTTGCATCTTTTCTCGAGGCCATTTGATTTGTTATTCTGTTTATCTTTAGTTATATCCTCTTAACCACAACTTTTCTTCCTCTTTTAGCTTGCTGCTTTGAACCAATTGAGAAATATATTTGGTTTGGGGAAACGAGAAGCAGATACAATCACATTGGATGTAACCTCAAAGGTATACCGTAAACGACTAGCTCAAGCTGTTACCAGTGGTGAATTAGAAGCGTTCGAAAGCAAAGCAGCCTATCTTCAAAACCTTTGTGAAGAATTAATTTTTGATC</genome_strand>
        <mrna_strand>GGAGATATGGTGCAACGTCGG.................................................................................................GCATTTCAAAAGTTGATATATGTCTCAACTATTGTATTTGGAGAAGCATCTGCTTTCCTTTTACCTTGGAAACGTGTTTTCAAGGTTACTGATGCCCAG....................................................................................................................................................................................................................GTTGATGTTGCTGTCAGGGACAATGCACAACGGTTGTATGCCTCCAAGCTTAAGTCTGTTGGGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGATGTGAACCAGCTGATCAGTTTGAGAGAAGCACAGCTTGCATATCGATTGTCCGACGAG.......................................................................................................................................................................................CTTGCACATGAGATGTTTAAGGAGCATGCAAGAAATCTTGTTGAGGAAATCATATCAACTGCTGTTGGCATATTGAAGTCAAGGACAAGAGCAAC.........................................................................................................................................................................................GGAACCCACACGTGTCATTGAGGAACTTGATAAGGTATTGTCATATAATAATTTGTTAATCTCACTGAAGAACCATGCTGATGCTAGTCGTTTTGCTCCTGGCACTGGGCCAGTTTCCTTAGTAG....................................................................................................................................................................................GAGGGGAGTATGATGGTGATAGGAAGATGGATGACCTAAAACTTCTCTACAGAGCATATGTTACAGATTCTTTGTCAAGTGGTCGGATGGAAGAAGACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTGCTTTGAACCAATTGAGAAATATATTTGGTTTGGGGAAACGAGAAGCAGATACAATCACATTGGATGTCACCTCAAAGGTATACCGTAAACGACTTGCTCAAGCTGTTACCAGTGGTGAATTAGAAGCATTCGAGAGCAAAGCAGCCTATCTTTCAAATCTTTGTGAAGAATTTA-ATTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427613" ref_strand="+" ref_description="SGN-E427613 [STM-48-F12]">
      <seq>ggagatatggtgcaacgtcgggcatttcaaaagttgatatatgtctcaactattgtatttggagaagcatctgctttccttttaccttggaaacgtgttttcaaggttactgatgcccaggttgatgttgctgtcagggacaatgcacaacggttgtatgcctccaagcttaagtctgttgggagagatattgatgtgaaccagctgatcagtttgagagaagcacagcttgcatatcgattgtccgacgagcttgcacatgagatgtttaaggagcatgcaagaaatcttgttgaggaaatcatatcaactgctgttggcatattgaagtcaaggacaagagcaacggaacccacacgtgtcattgaggaacttgataaggtattgtcatataataatttgttaatctcactgaagaaccatgctgatgctagtcgttttgctcctggcactgggccagtttccttagtaagaagggagtatgatggtgataagaagatggatgacctaaaacttctctacagagcatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="120264" stop="122817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120467" g_stop="120487" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120488" i_stop="120584" i_length="97">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120585" g_stop="120683" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="120" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120684" i_stop="120895" i_length="212">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120896" g_stop="120962" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="187" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120963" i_stop="121623" i_length="661">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121624" g_stop="121688" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="252" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121689" i_stop="121871" i_length="183">
            <donor d_prob="0.935" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121872" g_stop="121966" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="347" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121967" i_stop="122151" i_length="185">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122152" g_stop="122276" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="472" r_length="125" r_score="0.952"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122277" i_stop="122456" i_length="180">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122457" g_stop="122517" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="533" r_length="61" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-E427613" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120467" e_stop="120487"/>
          <exon e_start="120585" e_stop="120683"/>
          <exon e_start="120896" e_stop="120962"/>
          <exon e_start="121624" e_stop="121688"/>
          <exon e_start="121872" e_stop="121966"/>
          <exon e_start="122152" e_stop="122276"/>
          <exon e_start="122457" e_stop="122517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATATGGAGCAACGTCGGGTGGGTCATCTCTTCAAAAAGCTTCAGTTTCCAAAGACTACTGCCTTAAGTTATCGAATAACAACAAATGGAACTTGATCATTTTTGACTTCTCCAGGCATTTCAGAAGTTGATATATGTCTCAACTCTTGTATTTGGAGAATCATCTGCTTTCCTTTTACCTTGGAAACGTGTTTTCAAGGTTACTGATGCCCAGGTAGCGGATTATTTATCACTCTCTCCCTCTTTGTGGAGTATTCAGATTGTGCAGTGGCATGTCCTGCTTGTGTGGTTTTAACATTTCTGTATTTTGATTTGAGGTTCCTGTCATTTGTCTCTTTCCCTGCCCCCTTCATTTATGTAATATTAGATTTCTATATAGTGCGACCCCCTGTGTCCTTTTACTCGTTTTAACATTTTTGCCATTAGGTTGATGTTGCTGTCAGGGACAATGCACAACGGTTGTATGCCTCCAAGCTTAAGTCTGTTGGGCGAGGTAAGTTTTCTCTATTGATGCCTTTGAAGGCACTTTTACTTCTAACGTAACCTATTCATAGGAAACCATTTTACTAGTTTTCTTTTGCATACCTAATTAAACTAATGCTCTTCCAAACTACTTGTCGATATTCTTGGGTATGTTTTCTAAAATTTTCGATCTCTATTAAACTGATTCTAATAAATCTGTATATGTGCTTAAATTTGGCTTTTTTGTGGTATGTGGTGCTTAATCCTGAACAAAGATGAATCATACCATGAGGCTCCACATATGTGGCATGGGTTTAGTATGTTCTATTCATGCACTGAGTAGAGACTTTTTTGAAGTCTTTCTGTCGCTTCAAATTTCTTTGCATTTTAGTGATATATCCTATTGGTTTATGGGTTTTGAGAGCCTTCTGACGATAGCTCTTGAATCTGGACATCTCGTTATTGCTTAGAGTAGAGGGAGTCTTTGTATGATTCCACCAATCTTATATGGAAAATGCTAATTCTTTCATTATCTTCACGAACTCCACTCTTAGTAGCATCTACCTTGAAATTCTATGTTATGGACTTGTGGCGGTGTCAGGGTGATATCACTTGTTTCTTTTCATGATTTAATTCCTGCACTGCACTTCAGTGGTTTTGCATGGTTAATTTAATTACTTTACCTGTTCCAGATATTGATGTGAACCAGCTGATCAGTTTGAGAGAAGCACAGCTTGCATATCGATTGTCCGATGAGGTAGTGCCTAAAAAAATTATCATAATTCTGCTTCATATCCCTGTAGAAATACCTTTTTCTCCTCGAAAAAGGAGATAAGATTGCTATGAATTTGTTGCACAATATTCATGATTGAATTTACTTTGTCCATGTATTCTGTCATCAAATATATGCACAATCATGTCCATTTCTTTCTGTTTGCAGCTTGCACATGAGATGCTTAAGGAGCATGCAAGAAAGCTTGTTGAGGAAATCATATCAACTGCTGTTGGCATATTGAAGTCAAGGACAAGAGCAACGTAAGGTCTTTTAAGTATATTTAACCTCTTAAAAGGGAACTTCCATTTTACTGGATAAATTTTTTACCAAGCAATTCTAGTTAATAGAAATGGGACTGCTCCTATAATTTCTAGCAAGACAGAATGTATCATATTCTTTGCTTGTATCATTTGTTTAATTCAAACTGATTGGGTTTGTTTAGCAGGGAACCCACGCGTGTCATTGAGGAACTTGATAAGGTATTGTCATATAATAATTTGCTAATCTCATTGAAGAACCATGCTGATGCTAGTCGCTTTGCTCCTGGCATTGGGCCAGTTTCCTTAGTAGGTATGTACGTCGATGATCTTGTCTGACTCTTTTTATAGAACTTGTTAGAAGTTGCGGGTTTCTATCAAGTCTCAAGTGAAATCCTTTCATGGAGCTCTTTCTTTCAGCTGTTTTTATCTCAGTTTTTTAGCTGAAGTTAGTTTTCCCTTTTCTTCATTCTTTTTCTTCCTGCTCCTTCAGGAGGGGAGTATGATGGTGATAGGAAGATGGATGACCTAAAACTTCTTTACAGAGCATATGT</genome_strand>
        <mrna_strand>GGAGATATGGTGCAACGTCGG.................................................................................................GCATTTCAAAAGTTGATATATGTCTCAACTATTGTATTTGGAGAAGCATCTGCTTTCCTTTTACCTTGGAAACGTGTTTTCAAGGTTACTGATGCCCAG....................................................................................................................................................................................................................GTTGATGTTGCTGTCAGGGACAATGCACAACGGTTGTATGCCTCCAAGCTTAAGTCTGTTGGGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGATGTGAACCAGCTGATCAGTTTGAGAGAAGCACAGCTTGCATATCGATTGTCCGACGAG.......................................................................................................................................................................................CTTGCACATGAGATGTTTAAGGAGCATGCAAGAAATCTTGTTGAGGAAATCATATCAACTGCTGTTGGCATATTGAAGTCAAGGACAAGAGCAAC.........................................................................................................................................................................................GGAACCCACACGTGTCATTGAGGAACTTGATAAGGTATTGTCATATAATAATTTGTTAATCTCACTGAAGAACCATGCTGATGCTAGTCGTTTTGCTCCTGGCACTGGGCCAGTTTCCTTAGTAA....................................................................................................................................................................................GAAGGGAGTATGATGGTGATAAGAAGATGGATGACCTAAAACTTCTCTACAGAGCATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333968" ref_strand="+" ref_description="SGN-E333968 [cTOD-24-P23]">
      <seq>tttgagagaagcacaacttgcatatcgattgtccgatgagcttgcacatgagatgctcaaggagcatgcaagaaagcttgttgaggaaatcatatcaactgctgttggcatattgaagtcaaggacaagagcaaccagggaacccacacgtgtcattgaggaacttgataaggtattgtcatataataatttgctaatctcactgaagaaccatgctgatgctagtcgctttgctcctggcattgggccagtttccttagtaggaggggagtatgatggtgataggaagatggatgacctaaaacttctttacagagcatatgttacagattctttgtcaagtggtcggatggaagaagacaagcttgctgctttgaaccaattgagaaatatatttggtttggggaaacgagaagcagatacaatcacattggatgtaacctcaaaggtataccgtaaacgactagctcaagctgttaccagtggtgaattagaagcgttcgaaagcaaagcagcctatcttcaaaacctttgtgaagaattaatttttgatccacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="121349" stop="131801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121649" g_stop="121688" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121689" i_stop="121871" i_length="183">
            <donor d_prob="0.935" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121872" g_stop="121966" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="135" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121967" i_stop="122148" i_length="182">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122149" g_stop="122276" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="263" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122277" i_stop="122456" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122457" g_stop="122557" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="364" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122558" i_stop="131305" i_length="8748">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131306" g_stop="131501" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="560" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-E333968" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121649" e_stop="121688"/>
          <exon e_start="121872" e_stop="121966"/>
          <exon e_start="122149" e_stop="122276"/>
          <exon e_start="122457" e_stop="122557"/>
          <exon e_start="131306" e_stop="131501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGAGAAGCACAGCTTGCATATCGATTGTCCGATGAGGTAGTGCCTAAAAAAATTATCATAATTCTGCTTCATATCCCTGTAGAAATACCTTTTTCTCCTCGAAAAAGGAGATAAGATTGCTATGAATTTGTTGCACAATATTCATGATTGAATTTACTTTGTCCATGTATTCTGTCATCAAATATATGCACAATCATGTCCATTTCTTTCTGTTTGCAGCTTGCACATGAGATGCTTAAGGAGCATGCAAGAAAGCTTGTTGAGGAAATCATATCAACTGCTGTTGGCATATTGAAGTCAAGGACAAGAGCAACGTAAGGTCTTTTAAGTATATTTAACCTCTTAAAAGGGAACTTCCATTTTACTGGATAAATTTTTTACCAAGCAATTCTAGTTAATAGAAATGGGACTGCTCCTATAATTTCTAGCAAGACAGAATGTATCATATTCTTTGCTTGTATCATTTGTTTAATTCAAACTGATTGGGTTTGTTTAGCAGGGAACCCACGCGTGTCATTGAGGAACTTGATAAGGTATTGTCATATAATAATTTGCTAATCTCATTGAAGAACCATGCTGATGCTAGTCGCTTTGCTCCTGGCATTGGGCCAGTTTCCTTAGTAGGTATGTACGTCGATGATCTTGTCTGACTCTTTTTATAGAACTTGTTAGAAGTTGCGGGTTTCTATCAAGTCTCAAGTGAAATCCTTTCATGGAGCTCTTTCTTTCAGCTGTTTTTATCTCAGTTTTTTAGCTGAAGTTAGTTTTCCCTTTTCTTCATTCTTTTTCTTCCTGCTCCTTCAGGAGGGGAGTATGATGGTGATAGGAAGATGGATGACCTAAAACTTCTTTACAGAGCATATGTTACAGATTCTTTGTCAAGTGGTCGGATGGAAGAAGACAAGGTAGGTGGTTTTAATTTCTCTCTGCTTCATTTCTTCTGCTTTTTCAGGTTTTTTGGAATTATTATTTTCTACTTGTTTGCCAAAATGGCCGGAAAATTTGAATCTCTCGTGCATTTGTCAAACTAAAGTTATGTTAAACATATATATGAATGGACTGGAAGTTAAAGGAACATACTCCTTTTCTCTTATCCTGCTTCAATATGTTATTCTGGTATGGTAGGACAATAATGGGTATACTAGTAGATTTGTTTGCCAATGGAAAATGGCTTGTGCCCACCCACTTTTGTCGATAACTGGACAGGAGTAGACACATATTCTTTTCTCTTTTCCAGCTGTTCTGTGGTTGAAATGCTGATATAGAAAGCCAGGATGTCCCTACATTTTACTCCCGTATTTTGTATTTTCTGTCCTCCTGTAATGACCCCTCTATGTTCTATGATGAACTAGAAGCAAAAAATGGATGATGTGGAGAAAAAGCAGAATATTGTGGTTTTGGACCAAAATTACAAGTTGTTGAATCAAGAGTATTGATATGACCTTAATGTTTTGGACACTAGAAAGAGAGTACACTGTGCAAGCTGGTTTAAAGTAAGCTTTGACATTGCCAACTGAGGTTCTTTTATTAATGTGCTCAATGAAATGGCTCTCAAGAGAAAATGGACTAGATGGTTCTTTTTTTTTCCTGAAGTAAGATATGTTAACAAGGCATCAGGTGGATGCAGAGTAGTTGCATAAGAGAGTCATGGTTAACTATGAGAACAAAAACTTCTTTTCTAAGTCAGGGAGTTAACCAGAAAACAAAACCATGATCTCTAAACCATAGTAAGGGAGCTGATGAAATCTAAAAGGAAATTATACCATTTAAAGGGGATAGATTGAGGACAAGATGGATTTATTTTTGCATAAGCACATTTAGTCTTTTTTGGTCAAAACCTTAAATATTTCGTTATGCCCAAAGTATCGAACTTTACAAAACTGCCAACACATTAGACTCAAGTCGGCTCGGCTCCCTTGTACTCTTTCAATACAAACGACTATAAGCAGAACAATTATTTAACAATGTAAAATTAACTTTGAACAATTATCTATAAGCTATTCTGGGAAGTGTTAAGCTGTTCTTACTTTGCTAACCATATGCTGTGTCTTTGTCCCTCTATGTGCACCTGGACTGCTATTTCTCGAAGCCTTCGTGTACAACAGAATCCAAACATTCCTGCTTGCGGTCTGCTATTGCTTTCCTGATTCCAGTCGCCAATAGACCTAGTGTGGTCCAACCATTTCACAAGAAATGGCCTTATGAATGCCGAGTATGGGCAATCAAAAAATAGGTGCTCAGGTGTCTCCTCCACTTGATCATTGCATAGTAAACAATCAGTGGACCCTACTTTTCCCCATTTCTGCACTCTATCCACTGTTGACAGTTTTCTATGTAAAGCCACCATAGAATGAACTACTGCCTTGGGATCTGACCTTGAACCAACACCAATTTACTCCATATGACTTTAAGGTGTTGTGCCATCATTGGCACATACCTTTTCTTTATACTATACTCCTTTGAGTCAATAAGTACTTATAGCTTATTATGTAAGGTACTATAATAAGCAACTCCTGGCATGAAAAATTTCCTCAATTAAGCAGGCCTGTTTAGGAGTTTTCATTCTCTCCAAGTGGCTTTTATATAGAATGTATGTGCCCACAACACCCATTGTTTGTCCTTCTGCTCTACTTGCTAGAGGAGCTTACATATTGCTGCCTTGTTCCATGTAAGTATATCAATCACATTCAGACCCCCTGCTGTCTTGGGCTTACAGTCCGTCTCCCATGCAACCAAGGTATCTTTTGAGAAGTCATTGCTCCCTTCCATGAGAAAGTTTTACTCACTGTTGTAAGCATCGTAATGATCTTCTTTTGTAACAAGAATATTTGGGACCAATATGTTTGCATTTGAAACAACACTCTTCACTAGCTGTAATCTACCACGGTAGGACAACAACTTGGAGGACCAACATTTGATTCTTGCTCATTTTTTCAACTATGGGCAGACACTATTGAATTGAGAGCTTTCTGTTTGAATCTGAGATTGGGACTCCCAAATACTTGAGCGGGAGCCCTCCTAATGATAAGTTCAACTCACAATAATTCTCTCCTTAAATTTAGGAGGGACATCTTAAATATATAAAGAACTTTTCTCCATATTGGCATGCAGGCCTGAGACCTCAGAGAATTGTTTGAAGGTATTAAGCAGTAGCTTAATGGAGTCTTCATTTGACTTACAACTGATTGATATATCATCAGCAAAACATACATGAATAATACCCAACTTACCACATCTTCGATGGTAGTTGAACTGAAGTTGTGCTTCAGCTGTTGAAGTGTTTTGTGCAGATACTCCATGGCTAATACAAACACATATGGTTACATGGGGTCCTCTTGTCTCAACCTTTTGTTGCTTGGAATTGTTGAGTCAGACCACCATTAATCAGCAAGCAATACTATCCTGAGCAATGGCCATCTATTGAGTCATATGCTGTTCTAATGTTCACACTTATAGTATATCTAGGCTAAGTTGCTCGGACTCGAGTGCGGTTATCCGAAACGGATGCGAATTCGATTCTCGGATTCGACTAAATTCAAATTTTAAGATTCGTGGGTGCGAATCCGATTATGGATACGGGTGCGGGGACAACTAATTTTTTTTTAATATTGTAAAAATATAGTTTTATATATACTAAACAAATATATAAATACACAAATACACACACTAAACAACTGCATAAATATAATTTATTTTATAAAAAAGTACACTTATTTCGGGAAAACCTTCGTTTTTAAATAAAAAAGTACACTTATTTCGGGAAAACCTTCGTTTCTGTCGCTTGGAGTTCTTTTTTAAGAAAAAGTGAAAAGACCCAGTACTTTTCTCTGTATTTACTTCGCTTTTTCAAGAAAAAAATTTCTTTCTTCTCTTCTATTCTCTGTATTTCTCAAGCTGGAAACTTATTTTCTCTACTTCCACCTTTTCTCTATACTTTTTCAACGATCGATCGAATCTGACACGCATCCCGCACCCGCGCGTGCACCAGTGTTGCGTTGAGATGGGTTTGCCTGCAAATATGAAGAGTCAGCGCGCTTTTACGTACTGATTTCGAAAATTGAAGGTTTCGAAGCGGATTTCACAACTTTGGCAATTTTTATTAAAATTGTTTTTTGGAAAAACATGTAATTTCAGGAGTCGCCACTTAATTTTTAGAAAAATTAGGAAGACCGTTTTAGAAGGAATTATTTAAAAGAAAACGTTTAAATAAAATCAGTGTTTTGGGTACGGTTCAACTAATTCTCTAAGGAATGGTTTAGGCACCTTAGAGAATCCGCTAACACGCGGTTGACCGACGGATTTTAAAATTGGCTAATTTTAAAAAAAAAACTTAAGAATACTTGAAAAATCTTATTTATTTATTTATTTCAAAGTACTCAAAAATTCTTGTTGAAAACTTAGATAGATATCTTTTGATACTTCTAAAAGTCTCAAGATTTATCTTTAACTTTTGTCCATAGTCATATTTTGAACCATACAAATAATTCAACACATAAACATGAATTATAAGACTTTGTTTAACAACTATGAAAGATCCTTAAGTCATTCATACAAAGTTCTAAGTTAAATTAAAAGACAACTAATTTAGTTTAAGAAACTTAACTATTTTATCCTATTCAAAAATTTGAACTAAATAGTTAGTTCAAACTTGTAAACATGGATTCAAATCTTTTTAATAACTATGAAAGAACATAATAGATTCTTAAGTTATTCTAATAAGCTTAAGCTGTCTAACTTAAAATGAGTCAATGAGTGATAAGAAACAAGAAACGATTTAAAAAATAACATTGATAACTCTAGGGAGGATTCATCTAGTTCAAAGGCGAAACAAACCAAAAAAAAGTTAGTATGATAATAAAAACACCATATAAAAAAAAAGTTAAATGTAAATGAGAATAAAATATGAGCTTCCAGGCCCTTAATCCACTCCTTGTTTGCTGCTGCGCATTTTTCAGTGGACTTTTGAGAGTCCAAAATTATCATTTTCAGCCTTTTCAAGGCTACTGCTGCTGCTGGTTTACTTGGGTTTTTACCCAATAATACTAGTTTCCTTTTATCGACTCAGATGAGGTTAATTCAAAGAGAGGAAAGTGCAGGAAAGGGGGAGTTCCAATCGGACTCAAATCAGGAGAAGTCATGCAAAGAAAACGAAAAATAAAAAAATAAAAATTAGCAAGTGATTTAATAAGACTTATGAACTACAAACCTTAAAGACATATTCAACATCAATAAAGATAACGCATAGGAGTTAGATGATGTCCAACAAATTACTCTCTAATCGAATGCACCTCTTATTTTCCTAATGATCGAACAAGTGCCCATTAAGTTAACCACATAACTAGTTTTCTATTAATCACAATTCAACTTATCAATATAAAAGATTAGAAATGATGATTCGCTTTAAACAAAAGCTAAAAAATGGTTGGATTTGAAAAAGAATGACTAACAGTAAAAGTTGCATCTGACTTAACAGATAAATAATGAAAACAAATCAATACCAACAACTTCAATAAAAGAGTTGGGGAAGAAATCGATATTTGTCATTTTCTCAAAGATATGAATCCCAACAGTAAGTTTATCATGCAACTAAAAAATGAAGGATATTACTCAAATTGAGTCAAAACCTAAGAATTGAAGAAGCAAATATTTAGAGCAAAACTAAAGGCAACATTAAAAGAGCCAACACAAATTAACATTTCCATGAAATCAGATTGTAAGGCCAAGATTAGTGGCATAACCGAGCTTGGCTCTCTCCAAGAAGATTTGAAACTAAAATAGCTCGAATTCTTGTAACTTGATAGGTAATCCAAAGAAAATCCCAAACAAGGATATTATAGCCTTCAGATTTGAACTAAAATCAGAAATTTTAAACCAAAACAAATGACAACTTGGCTATTGGGGGTACAAGTAGTTTGCTGTCACAGGAAAAACAAAAGGAATATAGTAAATACAAAGAGATGCATTCATTTTTTGTAGGAGTAAAAGAAGTATCCAAATCAAGTACCAATCTGTTCTGATAATACAAAGACTAAACCCTTGGAGAGCTTTAACATCCATGGCTAAAAAATGAACAATTAGAATGATATGATTTCACAAGGTAAAACTACTAGACATAACAAGGAAGTAACTCTCTTTTTTAAAGCATACTACGGCTAATGTAAAACAAACGAAACCTTAAGACCACAGATTCATGAAACAGAGCACATCAAGTTGATTTTGAAGAGAAGAGATAAAATAATTGCAAAGATATATGGCAAACGCTTCAGACTCAAACGGATATATGGTCCTAAAGGAAGCAACACTTCAAGAAGATTTAAACTAAAAAAATGTAACACATCTTTCATGAATCTGGAACCATATATAGAAGACAAATGAGACAGAGAACAATCATGCATAAAAATGATACAGTGAAGTCGTCTACTACATATTAGAAAACACACTAACGAATGAAAACTCAAACCATTGCCAAAACGAGTTAACTACTATTTCAATCCCATTTCATATATCACGAGATGAACTAACACTTAACAAAACGAAAGCACAATCACTTCATCAAATGGATTGTGAACCAAAGTAAAGTAAGGGAAGACAGAAAATTACCCTTTCCGGAGCAGCGAACTTGACGAAATGATGAGCAGAGGGCAACAAGCTTTCACCACTAAAACCCGAACTAGACAACGGACGAGAAGCCTAGGCAACAACTAAAACTCGAACCAACTTAAAGAACTACGATGATCGAGCTAGGACGGAAACTACCTCTTCCTTATCTCTTTCAAGTGTATTTCTTATATATCTTATAGCTAATTTGTTGTATCATTCTCTTTCTCTGTTTTGAATTCCCAACCCTTCTCTCAGTGAAGGATCTCCAACCCGAAATGAATAAGAAAGAAGGTATTTATAGGAGGAAATAGGGCAGACTTGGGGGGAAACATATGAGGGTAGAATCGGGCTAAAAAAGAAGGGCCAAAATTTGAATTTCCAAATGGAAATCTATCCAGAGCAAAAGCATATTCCCAATGATTCTTGCAATTTCAACAGATTGAAGGCGAGATTGAGGGGTAAGATCAACCCATCGTCCTTCGAATGCTACGTGGCTCGATCTTGAGGCCACAAGGACGAATTTGCAGCTGGAATCGGCGCTGGAACTGTACTAAGCGTACTGTATGTTGAGGGAAAGGAAGAAGATGACAAGAAAATAATACTGGGTACCGTTGTACGCGTCTGTCGATTGACACCATGTAATCCCCGTCTGTTGGCTGTGAAGACGTTAATAATTCGCTGTCTTGCTACCGTGTACTATTCCGTTTGGCTTGACGCCTTATAGTTGGTGCTTTCGATGGGATTAGAAGGGAAAAGGGAATTGGGTTGGGTCAAAAGGAGTGGGCTGGGATTTCTGGGTTTTGAAATTGATAACATGGGGGTGAGGATTTAGAAAGGATGAGAATTGTTGTTGGAAAAGGGGAATAAATGAATAGGGTCATTTTGAGTATTGGGCTGCAAAATAAAGGCCCTAAAGAGTGACAAAGCTATATTAAATAACTTGAAAAATATTTTGAATTTTACAAAGTTGGTTATTTCAAATAGTTTGGAATTTAAGAAAATCGAAAGTCAATTCCTATCATGGAGGGTCAAAATTAGGTGTCAACAAACGCAACATAACATCTAGGTGACATTCCTTTCTAAGAGTAGCCCTTGACCATCTCACGTGCAGTCAGTACATTATCTAAGATGTTTCTACCCTGGATGAAAGCTGACAAAGGACTAACAATATAGTCCACTACAGTTTTTAGTTTTGGCAGTCAGTATCTTGGCTATAAGCTTATACAGGGTAGTGCAACAATCTATTGGCATTTACTACATATGATGGTGCAGTTACCTTAGGCACAAGTGTGACTGTGGTTGTGTTTACACCTTTTAACTATTTACAATTTTCAAAGAACCGTTTCCTCCCCCTTATTATTTCTCAGAAGTTTTTTAAAATTCTGCAATATAACCATCAATACATGGGCTCTTGTTCACTGGCTTGTCCTTCAAGGCTTTCACCACATCCTGAGTAATCACGGGTTGCAGTAGCTGTTGTTGTTGTTCAACTGTAAGGCAGGGGTCATCTCGAGCTGTGCATGAGTATACAAGGCATGGTTGATGCATCTGGCCCCAACAAAGTTTGAAAGAACGGGAGAAACTCCTGTTGTATCTGTTCTGGATCAGTCAGCTTAGTCCCCTGTTCTGTGTAAATAGAGGATATTTTGTTCGTTGCTCGCCTAGCTTTCAGGTGGACAGATAAGTACTTGTAGTTCCTTCTGCATTAATACCCTTTCGTAAAGACTTCCCCATTTCTCAAAGGTCTGCACTGGTTTCCTCTCTCCATTGATCAAGTCTTGGTTGAGGAGGTGTGTTGCCATTTCAACCTGCCCCTCCTCCATTTCCTCCTGCACTTTCTGGAGTCTTTGCCTCAATTGGATCAATTTCTTTTCTTTTGTCGAAAATTTCCTGGCCTACCTGAAGATGGAGTAAGCTGAAGATCCGTCATATCTGGGCTAATCACTTCTTCCCAGTACTTCAGCCTACCTCTGCCTTTCCTCGTCCCCACTATATCCAACCTCACACATCTCCTCACTGAGGCACTTGTACATCTCCTCTTCACATGCCCAAACCATCTCAGCTTCCCTTCCCTCATCCCACACACCCATCTCAACATTCTCATTTTCGCCACTTGCATTTTCTGTACATGAGAGTTCGACTAGCCAACACTTTCCCCTTACAATAACGCCAGTCTGACCACTACTCTATAGAACTTTTACCTTTAAGTTTCAGTGGTACATTCTTATCGCACAAGACAACGGACGCAAGCCTCCTCTGCATCTATATTCCACCGATACGATGTGTGACATCATCGTTGATATCCCCATTTCCTTGGATCAGAGACCCAAGATACTTAAATCTCTGTTTGGGACAACTTGCATATCAAGTCTCACTTTTATGGCTGCCTCATGCGTCACATCACCCTTTGAACTATTGTGATCTTAAACATGCCATATCATTCCTAAAAATGGAGTGTCATTAAGGGTATAACTGTAATATTGAAATTTAGAACTTATGAAATATAGAAGCAATTTTCTTTTTCATATAGACTAAAAAAAAGAGTAAAACATGTATAAATGAAACAGAGAAATTAACTGATGTGGAGTAATTCAACCTTGTGGAATCTTGGTTTCTGGGTGAAGGCTGGTATAACTACAGATAACAATATCTGGTAATGCGATAATAGAATTCGTTGAATAGCTGCAAGCAGATCAGTTTATGTTCTTCTAAGGCTCTTTGCTTGCAAACCAGTCTATGTTCTTCATTATCACATTAAGGATTACCTTTAGCTTGTTTGGGGGAACAGATTTCTTATTGATGATGAGATGGTTTGTGGGTCTGTTTGGTCTTTAGACCGATACACTCGTAAGGTTTGATCATATGAATCCTTTCCTTTTTAATGAATATGCTCAATTGTTTTGCTTCCTAATGAGTTTTCACTTATGTTACATGCCATGGAATCATCCAGATGCTATAGTATTCTCTTGCATCTTTTCTCGAGGCCATTTGATTTGTTATTCTGTTTATCTTTAGTTATATCCTCTTAACCACAACTTTTCTTCCTCTTTTAGCTTGCTGCTTTGAACCAATTGAGAAATATATTTGGTTTGGGGAAACGAGAAGCAGATACAATCACATTGGATGTAACCTCAAAGGTATACCGTAAACGACTAGCTCAAGCTGTTACCAGTGGTGAATTAGAAGCGTTCGAAAGCAAAGCAGCCTATCTTCAAAACCTTTGTGAAGAATTAATTTTTGATCCACAAA</genome_strand>
        <mrna_strand>TTTGAGAGAAGCACAACTTGCATATCGATTGTCCGATGAG.......................................................................................................................................................................................CTTGCACATGAGATGCTCAAGGAGCATGCAAGAAAGCTTGTTGAGGAAATCATATCAACTGCTGTTGGCATATTGAAGTCAAGGACAAGAGCAAC......................................................................................................................................................................................CAGGGAACCCACACGTGTCATTGAGGAACTTGATAAGGTATTGTCATATAATAATTTGCTAATCTCACTGAAGAACCATGCTGATGCTAGTCGCTTTGCTCCTGGCATTGGGCCAGTTTCCTTAGTAG....................................................................................................................................................................................GAGGGGAGTATGATGGTGATAGGAAGATGGATGACCTAAAACTTCTTTACAGAGCATATGTTACAGATTCTTTGTCAAGTGGTCGGATGGAAGAAGACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTGCTTTGAACCAATTGAGAAATATATTTGGTTTGGGGAAACGAGAAGCAGATACAATCACATTGGATGTAACCTCAAAGGTATACCGTAAACGACTAGCTCAAGCTGTTACCAGTGGTGAATTAGAAGCGTTCGAAAGCAAAGCAGCCTATCTTCAAAACCTTTGTGAAGAATTAATTTTTGATCCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427614" ref_strand="-" ref_description="SGN-E427614 [STM-48-F12]">
      <seq>gaatagatggttatgatactgaaaccaagaatgctgtgaggaaggccgcatatggtttacgattaaccagggaggttgccatgactattgctagtaaggcagtcagaaagattttcatcacttacattcagagggcccgaggagctgggagccgcactgaatcagccaaagaactgaaaaaaatgatagcctttaatagttttgttgcgtctcaactagttgcagacatcaagggtgaatcagctgatacaccgccagaagagactcaagaagaacagattcaacaaaacgaagaggaggatgaggagtgggagtccttgcaatcactaagaaaagtaaaacccagcaggaacaatttgagaaaggaaatccagaccgagattactctcaaggacgatcttccggaaagagagagaacagaactttacaagacatacttgctcttctgtctaactgggcaagttactaaaattccttttggggtccagatcaccacaaagaaggatgactttgaatatgtttttttaagtcaacttggtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="133618" stop="134870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133918" g_stop="134018" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134019" i_stop="134129" i_length="111">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.535" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134130" g_stop="134570" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="542" r_length="441" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-E427614" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427614" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="133918" e_stop="134018"/>
          <exon e_start="134130" e_stop="134570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAGATGGTTATGATACTGAAACGAAGAATGCTGTGAGGAAGGCAGCATATGGTTTACGATTAACCAGGGATGTTGCCATGACTATTGCTAGTAAGGCAGTAAGTATCAGGATGCTAATTCTGGTTTTTTGGGTTGTAAAAGTTCTTTGATCCACTACGAGACGTACCTCCATATGTTTCTAATTACATTCAATGGCTTCACAAACACAGGTCAGAAAGATTTTCATCACTTACATTCAGAGGGTCCGAGGAGCTGGAAGCCGCACTGAATCAGCCAAAGAACTGAAAAAAATGATAGCCTTTAATAGTTTTGTTGCGTCTCAACTAGTTGCAGACATCAAGGGTGAATCATCTGATACACCGGCAGAAGAGACTCAACAAGAACAGATTCAACAAAACGAAGAGGAGGATGAGGAGTGGGAGTCCTTACAATCACTAAGAAAAGTAAAACCCAGCAAGAAGAATTTGAGAAAGGATATCCAGACCGAGATTACTCTCAAGGACGATCTTCCGGAAAGAGAGAGAACAGAACTTTACAAGACATACTTGCTCTTCTGTCTAACTGGGCAAGTTACTAAAATTCCTTTTGGGGTCCAGATCACCACAAAGAAGGATGACTCTGAATATGTTTTTCTAAGTCAACTTGGTAGC</genome_strand>
        <mrna_strand>GAATAGATGGTTATGATACTGAAACCAAGAATGCTGTGAGGAAGGCCGCATATGGTTTACGATTAACCAGGGAGGTTGCCATGACTATTGCTAGTAAGGCA...............................................................................................................GTCAGAAAGATTTTCATCACTTACATTCAGAGGGCCCGAGGAGCTGGGAGCCGCACTGAATCAGCCAAAGAACTGAAAAAAATGATAGCCTTTAATAGTTTTGTTGCGTCTCAACTAGTTGCAGACATCAAGGGTGAATCAGCTGATACACCGCCAGAAGAGACTCAAGAAGAACAGATTCAACAAAACGAAGAGGAGGATGAGGAGTGGGAGTCCTTGCAATCACTAAGAAAAGTAAAACCCAGCAGGAACAATTTGAGAAAGGAAATCCAGACCGAGATTACTCTCAAGGACGATCTTCCGGAAAGAGAGAGAACAGAACTTTACAAGACATACTTGCTCTTCTGTCTAACTGGGCAAGTTACTAAAATTCCTTTTGGGGTCCAGATCACCACAAAGAAGGATGACTTTGAATATGTTTTTTTAAGTCAACTTGGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688961" ref_strand="+" ref_description="SGN-E688961 [t3_tus_55_I08]">
      <seq>ctgatatcttctcatctggtactggagagtttgacgaagaagaggtatatgaaaatgtcccaaaagatcttaatataaatgttgagaaggccaaaaaagttgttcatgaactagctcttagcagattatcaaactcacttattcaggccgtgtcacttttaaggcagagaaatcataaagcattggtttattctctcaatgatctgttagcttgtgacaaggccgttcctgcaaccccattatcttgggaggtaccagaagaactgtctgatctgttcatcgtatatttgaagagtgatcccccaccagaaaagttgtccaggttacagtatctgttaggtataagtgattcaacagcagagacattgagaactgtgaaggatagagaactaccaaatggggcaggggaagaggagtttgtattttaattctgttatagctgctactgataaatgtttgtcagttgtagacggggagaggagagatggttgcaggtattttttgttaattaatgcaagtgaggtgtatctttttgcagtgcttttaagatgtgagctagaaacattggggtctcatagtgtttttagttactacccgtgcggggttaagtaccatattaagcatacggagatacccatcagtaatattcattttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="134611" stop="135964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134911" g_stop="135095" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135096" i_stop="135192" i_length="97">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135193" g_stop="135664" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="657" r_length="472" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-E688961" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134911" e_stop="135095"/>
          <exon e_start="135193" e_stop="135664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATATCTTCTCATCTGGTACTGGAGAGTTTGACGAAGAAGAGGTATATGAAAATGTCCCAAAAGATCTTAATATAAATGTTGAGAAGGCCAAAAAAGTTGTTCATGAACTAGCTCGTAGCCGATTATCAAACTCACTTATTCAGGCCGTGTCACTTTTAAGGCAGAGAAATCATAAAGCATTGGTATGAATTTTATCTTAAGACGGCTGTTGGTTTTGCTTGAATCATGCCATATATGTTTGTTGAAGTTTAAATGCTACTACTTCTGTCTGTTTTGTAGGTTTATTCTCTCAATGATCTGTTAGCTTGTGACAAGGCCGTTCCTGCAATCCCATTATCTTGGGAGGTACCAGAAGAACTGTCTGATCTGTTCATCGTATATTTGAAGAGTGATCCCCCACCAGAAAAGTTGTCCAGGTTACAGTATCTGTTAGGTATAAGTGATTCAACAGCGGAGACATTGAGAACTGTGAAGGATAGAGAACTACCAAATGGGGCAGGGGAAGAGGAGTTTGTATTTTAATTCTGTTATAGCTGCTACTGATAAATGTTTGTCAGTTGTAGATGGGGAGAGGAGAGACGGTTGCAGGTATTTTTTGTTAATTAATGCAAGTGAGGTGTATCTTTTTGCAGTGCTTTTAAGATGTGAGCTAGAAACATTGGGGTCTCATAGTGTTTTTAGTTACTACCCGTGCGGGGTTAAGTACCATATTAAGCATACGGAGATACCAATCAGTAATATTCATTTTCCC</genome_strand>
        <mrna_strand>CTGATATCTTCTCATCTGGTACTGGAGAGTTTGACGAAGAAGAGGTATATGAAAATGTCCCAAAAGATCTTAATATAAATGTTGAGAAGGCCAAAAAAGTTGTTCATGAACTAGCTCTTAGCAGATTATCAAACTCACTTATTCAGGCCGTGTCACTTTTAAGGCAGAGAAATCATAAAGCATTG.................................................................................................GTTTATTCTCTCAATGATCTGTTAGCTTGTGACAAGGCCGTTCCTGCAACCCCATTATCTTGGGAGGTACCAGAAGAACTGTCTGATCTGTTCATCGTATATTTGAAGAGTGATCCCCCACCAGAAAAGTTGTCCAGGTTACAGTATCTGTTAGGTATAAGTGATTCAACAGCAGAGACATTGAGAACTGTGAAGGATAGAGAACTACCAAATGGGGCAGGGGAAGAGGAGTTTGTATTTTAATTCTGTTATAGCTGCTACTGATAAATGTTTGTCAGTTGTAGACGGGGAGAGGAGAGATGGTTGCAGGTATTTTTTGTTAATTAATGCAAGTGAGGTGTATCTTTTTGCAGTGCTTTTAAGATGTGAGCTAGAAACATTGGGGTCTCATAGTGTTTTTAGTTACTACCCGTGCGGGGTTAAGTACCATATTAAGCATACGGAGATACCCATCAGTAATATTCATTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551372" ref_strand="+" ref_description="SGN-E551372 [TUS-55-I8]">
      <seq>ctgatatcttctcatctggtactggagagtttgacgaagaagaggtatatgaaaatgtcccaaaagatcttaatataaatgttgagaaggccaaaaaagttgttcatgaactagctcttagcagattatcaaactcacttattcaggccgtgtcacttttaaggcagagaaatcataaagcattggtttattctctcaatgatctgttagcttgtgacaaggccgttcctgcaaccccattatcttgggaggtaccagaagaactgtctgatctgttcatcgtatatttgaagagtgatcccccaccagaaaagttgtccaggttacagtatctgttaggtataagtgattcaacagcagagacattgagaactgtgaaggatagagaactaccaaatggggcaggggaagaggagtttgtattttaattctgttatagctgctactgataaatgtttgtcagttgtagacggggagaggagagatggttgcaggtattttttgttaattaatgcaagtgaggtgtatctttttgcagtgcttttaagatgtgagctagaaacattggggtctcatagtgtttttagttactacccgtgcggggttaagtaccatattaagcatacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="134611" stop="135934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134911" g_stop="135095" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135096" i_stop="135192" i_length="97">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135193" g_stop="135634" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="627" r_length="442" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-E551372" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134911" e_stop="135095"/>
          <exon e_start="135193" e_stop="135634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATATCTTCTCATCTGGTACTGGAGAGTTTGACGAAGAAGAGGTATATGAAAATGTCCCAAAAGATCTTAATATAAATGTTGAGAAGGCCAAAAAAGTTGTTCATGAACTAGCTCGTAGCCGATTATCAAACTCACTTATTCAGGCCGTGTCACTTTTAAGGCAGAGAAATCATAAAGCATTGGTATGAATTTTATCTTAAGACGGCTGTTGGTTTTGCTTGAATCATGCCATATATGTTTGTTGAAGTTTAAATGCTACTACTTCTGTCTGTTTTGTAGGTTTATTCTCTCAATGATCTGTTAGCTTGTGACAAGGCCGTTCCTGCAATCCCATTATCTTGGGAGGTACCAGAAGAACTGTCTGATCTGTTCATCGTATATTTGAAGAGTGATCCCCCACCAGAAAAGTTGTCCAGGTTACAGTATCTGTTAGGTATAAGTGATTCAACAGCGGAGACATTGAGAACTGTGAAGGATAGAGAACTACCAAATGGGGCAGGGGAAGAGGAGTTTGTATTTTAATTCTGTTATAGCTGCTACTGATAAATGTTTGTCAGTTGTAGATGGGGAGAGGAGAGACGGTTGCAGGTATTTTTTGTTAATTAATGCAAGTGAGGTGTATCTTTTTGCAGTGCTTTTAAGATGTGAGCTAGAAACATTGGGGTCTCATAGTGTTTTTAGTTACTACCCGTGCGGGGTTAAGTACCATATTAAGCATACG</genome_strand>
        <mrna_strand>CTGATATCTTCTCATCTGGTACTGGAGAGTTTGACGAAGAAGAGGTATATGAAAATGTCCCAAAAGATCTTAATATAAATGTTGAGAAGGCCAAAAAAGTTGTTCATGAACTAGCTCTTAGCAGATTATCAAACTCACTTATTCAGGCCGTGTCACTTTTAAGGCAGAGAAATCATAAAGCATTG.................................................................................................GTTTATTCTCTCAATGATCTGTTAGCTTGTGACAAGGCCGTTCCTGCAACCCCATTATCTTGGGAGGTACCAGAAGAACTGTCTGATCTGTTCATCGTATATTTGAAGAGTGATCCCCCACCAGAAAAGTTGTCCAGGTTACAGTATCTGTTAGGTATAAGTGATTCAACAGCAGAGACATTGAGAACTGTGAAGGATAGAGAACTACCAAATGGGGCAGGGGAAGAGGAGTTTGTATTTTAATTCTGTTATAGCTGCTACTGATAAATGTTTGTCAGTTGTAGACGGGGAGAGGAGAGATGGTTGCAGGTATTTTTTGTTAATTAATGCAAGTGAGGTGTATCTTTTTGCAGTGCTTTTAAGATGTGAGCTAGAAACATTGGGGTCTCATAGTGTTTTTAGTTACTACCCGTGCGGGGTTAAGTACCATATTAAGCATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263058" ref_strand="+" ref_description="SGN-E263058 [cLEG-59-H9]">
      <seq>tgatatcttctcatctggtactggagagtttgacgaagaagaggtatatgaaaatgtcccaaaagatcttaatataaatgttgagaaggccaaaaaagttgttcatgaactagctcttagcagattatcaaactcacttattcaggccgtgtcacttttaaggcagagaaatcataaagcattggtttattctctcaatgatctgttagcttgtgacaaggccgttcctgcaaccccattatcttgggaggtaccagaagaactgtctgatctgttcatcgtatatttgaagagtgatcccccaccagaaaagttgtccaggttacagtatctgttaggtataagtgattcaacagcagagacattgagaactgtgaaggatagagaactaccaaatggggcaggggaagaggagtttgtattttaattctgttatagctgctactgataaatgtttgtcagttgtagacggggagaggagagatggttgcaggtattttttgttaattaatgcaagtgaggtgtatctttttgcagtgcttttaagatgtgagctagaaacattggggtctcatagtgtttttagttactacccgtgcggggttaagtaccatattaagcatacggagataccaatcagtaatattcattttcccttttgatcttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="134612" stop="135983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134912" g_stop="135095" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135096" i_stop="135192" i_length="97">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135193" g_stop="135684" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="676" r_length="492" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-E263058" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134912" e_stop="135095"/>
          <exon e_start="135193" e_stop="135684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATCTTCTCATCTGGTACTGGAGAGTTTGACGAAGAAGAGGTATATGAAAATGTCCCAAAAGATCTTAATATAAATGTTGAGAAGGCCAAAAAAGTTGTTCATGAACTAGCTCGTAGCCGATTATCAAACTCACTTATTCAGGCCGTGTCACTTTTAAGGCAGAGAAATCATAAAGCATTGGTATGAATTTTATCTTAAGACGGCTGTTGGTTTTGCTTGAATCATGCCATATATGTTTGTTGAAGTTTAAATGCTACTACTTCTGTCTGTTTTGTAGGTTTATTCTCTCAATGATCTGTTAGCTTGTGACAAGGCCGTTCCTGCAATCCCATTATCTTGGGAGGTACCAGAAGAACTGTCTGATCTGTTCATCGTATATTTGAAGAGTGATCCCCCACCAGAAAAGTTGTCCAGGTTACAGTATCTGTTAGGTATAAGTGATTCAACAGCGGAGACATTGAGAACTGTGAAGGATAGAGAACTACCAAATGGGGCAGGGGAAGAGGAGTTTGTATTTTAATTCTGTTATAGCTGCTACTGATAAATGTTTGTCAGTTGTAGATGGGGAGAGGAGAGACGGTTGCAGGTATTTTTTGTTAATTAATGCAAGTGAGGTGTATCTTTTTGCAGTGCTTTTAAGATGTGAGCTAGAAACATTGGGGTCTCATAGTGTTTTTAGTTACTACCCGTGCGGGGTTAAGTACCATATTAAGCATACGGAGATACCAATCAGTAATATTCATTTTCCCTTTTGATCTTGAACATCAAT</genome_strand>
        <mrna_strand>TGATATCTTCTCATCTGGTACTGGAGAGTTTGACGAAGAAGAGGTATATGAAAATGTCCCAAAAGATCTTAATATAAATGTTGAGAAGGCCAAAAAAGTTGTTCATGAACTAGCTCTTAGCAGATTATCAAACTCACTTATTCAGGCCGTGTCACTTTTAAGGCAGAGAAATCATAAAGCATTG.................................................................................................GTTTATTCTCTCAATGATCTGTTAGCTTGTGACAAGGCCGTTCCTGCAACCCCATTATCTTGGGAGGTACCAGAAGAACTGTCTGATCTGTTCATCGTATATTTGAAGAGTGATCCCCCACCAGAAAAGTTGTCCAGGTTACAGTATCTGTTAGGTATAAGTGATTCAACAGCAGAGACATTGAGAACTGTGAAGGATAGAGAACTACCAAATGGGGCAGGGGAAGAGGAGTTTGTATTTTAATTCTGTTATAGCTGCTACTGATAAATGTTTGTCAGTTGTAGACGGGGAGAGGAGAGATGGTTGCAGGTATTTTTTGTTAATTAATGCAAGTGAGGTGTATCTTTTTGCAGTGCTTTTAAGATGTGAGCTAGAAACATTGGGGTCTCATAGTGTTTTTAGTTACTACCCGTGCGGGGTTAAGTACCATATTAAGCATACGGAGATACCAATCAGTAATATTCATTTTCCCTTTTGATCTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263781" ref_strand="+" ref_description="SGN-E263781 [cLEG-60-F16]">
      <seq>tgatatcttctcatctggtactggagagtttgacgaagaagaggtatatgaaaatgtcccaaaagatcttaatataaatgttgagaaggccaaaaaagttgttcatgaactagctcttagcagattatcaaactcacttattcaggccgtgtcacttttaaggcagagaaatcataaagcattggtttattctctcaatgatctgttagcttgtgacaaggccgttcctgcaaccccattatcttgggaggtaccagaagaactgtctgatctgttcatcgtatatttgaagagtgatcccccaccagaaaagttgtccaggttacagtatctgttaggtataagtgattcaacagcagagacattgagaactgtgaaggatagagaactaccaaatggggcaggggaagaggagtttgtattttaattctgttatagctgctactgataaatgtttgtcagttgtagacggggagaggagagatggttgcaggtattttttgttaattaatgcaagtgaggtgtatctttttgcagtgcttttaagatgtgagctagaaacattggggtctcatagtgtttttagttactacccgtgcggggttaagtaccatattaagcatacggagataccaatcagtaatattcattttccccttttgatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="134612" stop="135975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134912" g_stop="135095" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135096" i_stop="135192" i_length="97">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135193" g_stop="135675" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="668" r_length="484" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-E263781" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134912" e_stop="135095"/>
          <exon e_start="135193" e_stop="135675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATCTTCTCATCTGGTACTGGAGAGTTTGACGAAGAAGAGGTATATGAAAATGTCCCAAAAGATCTTAATATAAATGTTGAGAAGGCCAAAAAAGTTGTTCATGAACTAGCTCGTAGCCGATTATCAAACTCACTTATTCAGGCCGTGTCACTTTTAAGGCAGAGAAATCATAAAGCATTGGTATGAATTTTATCTTAAGACGGCTGTTGGTTTTGCTTGAATCATGCCATATATGTTTGTTGAAGTTTAAATGCTACTACTTCTGTCTGTTTTGTAGGTTTATTCTCTCAATGATCTGTTAGCTTGTGACAAGGCCGTTCCTGCAATCCCATTATCTTGGGAGGTACCAGAAGAACTGTCTGATCTGTTCATCGTATATTTGAAGAGTGATCCCCCACCAGAAAAGTTGTCCAGGTTACAGTATCTGTTAGGTATAAGTGATTCAACAGCGGAGACATTGAGAACTGTGAAGGATAGAGAACTACCAAATGGGGCAGGGGAAGAGGAGTTTGTATTTTAATTCTGTTATAGCTGCTACTGATAAATGTTTGTCAGTTGTAGATGGGGAGAGGAGAGACGGTTGCAGGTATTTTTTGTTAATTAATGCAAGTGAGGTGTATCTTTTTGCAGTGCTTTTAAGATGTGAGCTAGAAACATTGGGGTCTCATAGTGTTTTTAGTTACTACCCGTGCGGGGTTAAGTACCATATTAAGCATACGGAGATACCAATCAGTAATATTCATTTT-CCCTTTTGATCTTG</genome_strand>
        <mrna_strand>TGATATCTTCTCATCTGGTACTGGAGAGTTTGACGAAGAAGAGGTATATGAAAATGTCCCAAAAGATCTTAATATAAATGTTGAGAAGGCCAAAAAAGTTGTTCATGAACTAGCTCTTAGCAGATTATCAAACTCACTTATTCAGGCCGTGTCACTTTTAAGGCAGAGAAATCATAAAGCATTG.................................................................................................GTTTATTCTCTCAATGATCTGTTAGCTTGTGACAAGGCCGTTCCTGCAACCCCATTATCTTGGGAGGTACCAGAAGAACTGTCTGATCTGTTCATCGTATATTTGAAGAGTGATCCCCCACCAGAAAAGTTGTCCAGGTTACAGTATCTGTTAGGTATAAGTGATTCAACAGCAGAGACATTGAGAACTGTGAAGGATAGAGAACTACCAAATGGGGCAGGGGAAGAGGAGTTTGTATTTTAATTCTGTTATAGCTGCTACTGATAAATGTTTGTCAGTTGTAGACGGGGAGAGGAGAGATGGTTGCAGGTATTTTTTGTTAATTAATGCAAGTGAGGTGTATCTTTTTGCAGTGCTTTTAAGATGTGAGCTAGAAACATTGGGGTCTCATAGTGTTTTTAGTTACTACCCGTGCGGGGTTAAGTACCATATTAAGCATACGGAGATACCAATCAGTAATATTCATTTTCCCCTTTTGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594878" ref_strand="+" ref_description="SGN-E594878 [38139]">
      <seq>ttgaagagtgatcccccaccagaaaagttgtccaggttacagtatctgttaggtataagtgattcaacagcagagacattgagagctgtgaaggatagagaactaccaaatggggcaggggaagaggagtttgtattttaattctgttatagctactgataaatgtttgtcaattgtagacggggagaggagagacggttgcaggtatgttttgttatttaatgcaagtgaggtgtatctttttgcagtgcttttacgatgtgagctagaaacattggggtctcatagtgttattagttactacccgcgcgggttgaagtaccatattaagcatacggagatcattcagtaatattcattttcctttttgatcttgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="134995" stop="135979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135295" g_stop="135681" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-E594878" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135295" e_stop="135681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGAGTGATCCCCCACCAGAAAAGTTGTCCAGGTTACAGTATCTGTTAGGTATAAGTGATTCAACAGCGGAGACATTGAGAACTGTGAAGGATAGAGAACTACCAAATGGGGCAGGGGAAGAGGAGTTTGTATTTTAATTCTGTTATAGCTGCTACTGATAAATGTTTGTCAGTTGTAGATGGGGAGAGGAGAGACGGTTGCAGGTATTTTTTGTTAATTAATGCAAGTGAGGTGTATCTTTTTGCAGTGCTTTTAAGATGTGAGCTAGAAACATTGGGGTCTCATAGTGTTTTTAGTTACTACCCGTGCGGGGTTAAGTACCATATTAAGCATACGGAGATACCAATCAGTAATATTCATTTTCCCTTTTGATCTTGAACATC</genome_strand>
        <mrna_strand>TTGAAGAGTGATCCCCCACCAGAAAAGTTGTCCAGGTTACAGTATCTGTTAGGTATAAGTGATTCAACAGCAGAGACATTGAGAGCTGTGAAGGATAGAGAACTACCAAATGGGGCAGGGGAAGAGGAGTTTGTATTTTAATTCTGTTATA---GCTACTGATAAATGTTTGTCAATTGTAGACGGGGAGAGGAGAGACGGTTGCAGGTATGTTTTGTTATTTAATGCAAGTGAGGTGTATCTTTTTGCAGTGCTTTTACGATGTGAGCTAGAAACATTGGGGTCTCATAGTGTTATTAGTTACTACCCGCGCGGGTTGAAGTACCATATTAAGCATACGGAGAT--CATTCAGTAATATTCATTTTCCTTTTTGATCTTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>14</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="14957" PGL_stop="15805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14957" e_stop="15805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="14957" e_stop="15805" e_length="849"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14957" stop="15472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15091" stop="15805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGCGACGGATCATCATGGTCACGATGGACCGTCATGGACTCCGTCATCTCATACTTATGCAATTTCTTCAGCTGCTCTTCTTCATTACCCTCGAAGGCAAGTACGACGGACCGTCATAGGCACAACGGTCCGTTGAGGGTCTTCGTTCCAAAACACTTCAACTCTTGGAAAATGGGTACTGGGATTATTTCTCTGAACTTCATGACGAACCTGCAGGACGGACCGTCATAGACACGACGAACCGTCACAAGCTTTGTAGCCCCACACTTGTTCAGACTTCCCCATCTTCCTTCAGCAACTGCACTACGCTGCCACCTACGGAACGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTGGCTCAAAATCTCCGCGTTCAGCTTTGGACAGATTTCCTGCAAAACAAAAAGAAACTTATATAAAAATTAGCGTAAAATGGGTTTTGGACACACTAAACATAAGGAAAAAGTATTAATAATACTGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCATTTTTTGTCCTCAAGCGACGCACTATGACTCAATACAAAATCTTTGTACAATAGTATACATGTTTTATCCTTTGCAATCGTTTGGATATCAATTCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTATGTGGGATTGGAACATGACACAGACTCACCATGCACTAACACCTATTCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTGGTATTGCAACTAGTGTCCTCACTTTAAACAAAATCCTCATTTTTTACACAATGATTTCAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> S  R  R  I  I  M  V  T  M  D  R  H  G  L  R  H  L  I  L  M  Q  F  L  Q  L  L  F  F  I  T  L  E  G  K  Y  D  G  P  S  *  A  Q  R  S  V  E  G  L  R  S  K  T  L  Q  L  L  E  N  G  Y  W  D  Y  F  S  E  L  H  D  E  P  A  G  R  T  V  I  D  T  T  N  R  H  K  L  C  S  P  T  L  V  Q  T  S  P  S  S  F  S  N  C  T  T  L  P  P  T  E  R  H  K  H  D  G  P  S  *  A  P  *  V  V  S  S  A  F  F  G  S  K  S  P  R  S  A  L  D  R  F  P  A  K  Q  K  E  T  Y  I  K  I  S  V  K  W  V  L  D  T  L  N  I  R  K  K  Y  *  *  Y  C  E  T  T  V  Y  Q  H  P  Q  L  K  F  I  F  C  P  Q  A  T  H  Y  D  S  I  Q  N  L  C  T  I  V  Y  M  F  Y  P  L  Q  S  F  G  Y  Q  F  R  L  I  S  S  N  L  C  M  L  S  L  L  G  L  N  Y  V  G  L  E  H  D  T  D  S  P  C  T  N  T  Y  S  L  Q  F  L  T  E  V  L  T  I  L  V  L  Q  L  V  S  S  L  *  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </first_frame>
            <second_frame>  R  D  G  S  S  W  S  R  W  T  V  M  D  S  V  I  S  Y  L  C  N  F  F  S  C  S  S  S  L  P  S  K  A  S  T  T  D  R  H  R  H  N  G  P  L  R  V  F  V  P  K  H  F  N  S  W  K  M  G  T  G  I  I  S  L  N  F  M  T  N  L  Q  D  G  P  S  *  T  R  R  T  V  T  S  F  V  A  P  H  L  F  R  L  P  H  L  P  S  A  T  A  L  R  C  H  L  R  N  V  T  S  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  L  A  Q  N  L  R  V  Q  L  W  T  D  F  L  Q  N  K  K  K  L  I  *  K  L  A  *  N  G  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  R  Y  I  N  T  L  N  L  N  S  F  F  V  L  K  R  R  T  M  T  Q  Y  K  I  F  V  Q  *  Y  T  C  F  I  L  C  N  R  L  D  I  N  S  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  I  M  W  D  W  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  P  R  C  *  Q  F  W  Y  C  N  *  C  P  H  F  K  Q  N  P  H  F  L  H  N  D  F  S  L  S  I  R  I   </second_frame>
            <third_frame>   A  T  D  H  H  G  H  D  G  P  S  W  T  P  S  S  H  T  Y  A  I  S  S  A  A  L  L  H  Y  P  R  R  Q  V  R  R  T  V  I  G  T  T  V  R  *  G  S  S  F  Q  N  T  S  T  L  G  K  W  V  L  G  L  F  L  *  T  S  *  R  T  C  R  T  D  R  H  R  H  D  E  P  S  Q  A  L  *  P  H  T  C  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  T  S  Q  A  R  R  T  V  I  S  S  V  G  G  L  F  C  I  F  W  L  K  I  S  A  F  S  F  G  Q  I  S  C  K  T  K  R  N  L  Y  K  N  *  R  K  M  G  F  G  H  T  K  H  K  E  K  V  L  I  I  L  *  N  H  G  I  S  T  P  S  T  *  I  H  F  L  S  S  S  D  A  L  *  L  N  T  K  S  L  Y  N  S  I  H  V  L  S  F  A  I  V  W  I  S  I  P  I  N  L  I  K  S  M  H  A  I  T  I  R  L  E  L  C  G  I  G  T  *  H  R  L  T  M  H  *  H  L  F  S  S  I  S  H  R  G  A  N  N  S  G  I  A  T  S  V  L  T  L  N  K  I  L  I  F  Y  T  M  I  S  V  *  V  *  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15458" stop="15754"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCETTVYQHPQLKFIFCPQATHYDSIQNLCTIVYMFYPLQSFGYQFRLISSNLCMLSLLGLNYVGLEHDTDSPCTNTYSLQFLTEVLTILVLQLVSSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15077" stop="15307"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQRSVEGLRSKTLQLLENGYWDYFSELHDEPAGRTVIDTTNRHKLCSPTLVQTSPSSFSNCTTLPPTERHKHDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14958" stop="15188"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDGSSWSRWTVMDSVISYLCNFFSCSSSLPSKASTTDRHRHNGPLRVFVPKHFNSWKMGTGIISLNFMTNLQDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15189" stop="15401"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRTVTSFVAPHLFRLPHLPSATALRCHLRNVTSTTDRHKLRRWSLLHFLAQNLRVQLWTDFLQNKKKLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="93005" PGL_stop="92160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93005" e_stop="92160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="93005" e_stop="92160" e_length="846"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93005" stop="92505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92874" stop="92160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92867" stop="92457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGACGGACCGTCGTGGTCATGACGGACCGCCGTGGACTCCGTCGTCCCATACTTGGTGCAATTCTTCTGCTGCTTTCTTCATTCCCCTCGACGGCAAGTGTGACGGACCGTCATAAGCACAACGGTCCATCGAGGGTCTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGATCACCTCTTCTATCTCCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCATAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACAGGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTCTCTCAAAATCTCCGCATTCAGCTTTAGACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTATACAATCTTTGTACAATAGTATTCATGTTTTTATCCTTTGCAATCATTTGGCTACCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATTCGAACATGACACAGACTCAACATGCACTAACACTATTCTCTTCAATTTCTCACCGAGAGGCTAACAATTCCGGTATAGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> A  T  D  R  R  G  H  D  G  P  P  W  T  P  S  S  H  T  W  C  N  S  S  A  A  F  F  I  P  L  D  G  K  C  D  G  P  S  *  A  Q  R  S  I  E  G  L  V  S  K  Y  F  N  S  W  N  L  G  T  G  S  P  L  L  S  P  R  R  T  C  R  T  D  R  H  S  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  L  Y  A  A  T  Y  G  P  S  Q  A  R  R  T  V  I  S  S  V  G  G  L  F  C  I  F  S  L  K  I  S  A  F  S  F  R  Q  I  S  C  K  T  K  R  N  L  Y  Q  N  *  H  K  K  G  F  R  T  H  *  T  *  G  K  S  I  N  Y  T  V  K  P  R  Y  I  N  T  L  N  L  N  S  L  F  V  L  K  R  R  T  M  T  H  Y  T  I  F  V  Q  *  Y  S  C  F  Y  P  L  Q  S  F  G  Y  Q  S  R  L  I  S  S  N  L  C  M  L  S  L  L  G  L  N  F  V  G  F  E  H  D  T  D  S  T  C  T  N  T  I  L  F  N  F  S  P  R  G  *  Q  F  R  Y  S  N  *  C  P  H  F  R  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </first_frame>
            <second_frame>  R  R  T  V  V  V  M  T  D  R  R  G  L  R  R  P  I  L  G  A  I  L  L  L  L  S  S  F  P  S  T  A  S  V  T  D  R  H  K  H  N  G  P  S  R  V  S  F  Q  N  T  S  T  L  G  I  W  V  L  D  H  L  F  Y  L  H  D  E  P  A  G  R  T  V  I  A  M  T  D  R  H  K  L  H  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  F  S  T  L  P  P  T  D  R  H  R  H  D  G  P  S  *  A  P  *  V  V  S  S  A  F  F  L  S  K  S  P  H  S  A  L  D  R  F  P  A  K  Q  R  E  T  Y  I  K  I  S  T  K  R  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  T  P  S  T  *  I  R  C  L  S  S  S  D  A  L  *  L  T  I  Q  S  L  Y  N  S  I  H  V  F  I  L  C  N  H  L  A  T  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  I  L  W  D  S  N  M  T  Q  T  Q  H  A  L  T  L  F  S  S  I  S  H  R  E  A  N  N  S  G  I  A  T  S  V  L  T  L  E  Q  N  P  H  F  S  H  N  D  F  S  L  S  I  R  I   </second_frame>
            <third_frame>   D  G  P  S  W  S  *  R  T  A  V  D  S  V  V  P  Y  L  V  Q  F  F  C  C  F  L  H  S  P  R  R  Q  V  *  R  T  V  I  S  T  T  V  H  R  G  S  R  F  K  I  L  Q  L  L  E  S  G  Y  W  I  T  S  S  I  S  T  T  N  L  Q  D  G  P  S  *  P  *  R  T  V  T  S  F  I  I  P  H  L  V  R  L  P  H  L  P  S  A  A  S  L  R  C  H  L  R  T  V  T  G  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  F  S  Q  N  L  R  I  Q  L  *  T  D  F  L  Q  N  K  E  K  L  I  S  K  L  A  Q  K  G  L  S  D  T  L  N  L  R  K  K  Y  *  L  Y  R  E  T  T  V  Y  Q  H  P  Q  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  L  Y  N  L  C  T  I  V  F  M  F  L  S  F  A  I  I  W  L  P  I  P  I  N  L  I  K  S  M  H  A  I  T  I  R  L  E  F  C  G  I  R  T  *  H  R  L  N  M  H  *  H  Y  S  L  Q  F  L  T  E  R  L  T  I  P  V  *  Q  L  V  S  S  L  *  N  K  I  L  I  F  H  T  M  I  S  V  *  V  *  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93004" stop="92660"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRTVVVMTDRRGLRRPILGAILLLLSSFPSTASVTDRHKHNGPSRVSFQNTSTLGIWVLDHLFYLHDEPAGRTVIAMTDRHKLHNPTLGQTSPSSFSSFSTLPPTDRHRHDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92511" stop="92302"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYRETTVYQHPQLKFVVCPQATHYDSLYNLCTIVFMFLSFAIIWLPIPINLIKSMHAITIRLEFCGIRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="120467" PGL_stop="131501"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120467" e_stop="120487"/>
            <exon e_start="120585" e_stop="120683"/>
            <exon e_start="120896" e_stop="120962"/>
            <exon e_start="121624" e_stop="121688"/>
            <exon e_start="121872" e_stop="121966"/>
            <exon e_start="122152" e_stop="122276"/>
            <exon e_start="122457" e_stop="122557"/>
            <exon e_start="131306" e_stop="131495"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.963" e_score="0.952"/>
          <exon-intron don_prob="0.982" acc_prob="0.989" e_score="0.970"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="0.985"/>
          <exon-intron don_prob="0.935" acc_prob="1.000" e_score="0.985"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="0.979"/>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="0.960"/>
          <exon-intron don_prob="0.999" acc_prob="0.908" e_score="0.990"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="120467" e_stop="120487" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="120488" i_stop="120584" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="120585" e_stop="120683" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.989">
            <gDNA_intron_boundary i_start="120684" i_stop="120895" i_length="212"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="120896" e_stop="120962" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="120963" i_stop="121623" i_length="661"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="121624" e_stop="121688" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="1.000">
            <gDNA_intron_boundary i_start="121689" i_stop="121871" i_length="183"/>
          </intron>
          <exon e_serial="5" e_score="0.979">
            <gDNA_exon_boundary e_start="121872" e_stop="121966" e_length="95"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="121967" i_stop="122151" i_length="185"/>
          </intron>
          <exon e_serial="6" e_score="0.960">
            <gDNA_exon_boundary e_start="122152" e_stop="122276" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.976">
            <gDNA_intron_boundary i_start="122277" i_stop="122456" i_length="180"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="122457" e_stop="122557" e_length="101"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.908">
            <gDNA_intron_boundary i_start="122558" i_stop="131305" i_length="8748"/>
          </intron>
          <exon e_serial="8" e_score="0.947">
            <gDNA_exon_boundary e_start="131306" e_stop="131495" e_length="190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120467" stop="120487"/>
              <exon start="120585" stop="120683"/>
              <exon start="120896" stop="120962"/>
              <exon start="121624" stop="121688"/>
              <exon start="121872" stop="121966"/>
              <exon start="122152" stop="122276"/>
              <exon start="122457" stop="122557"/>
              <exon start="131306" stop="131495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120467" stop="120487"/>
              <exon start="120585" stop="120683"/>
              <exon start="120896" stop="120962"/>
              <exon start="121624" stop="121688"/>
              <exon start="121872" stop="121966"/>
              <exon start="122152" stop="122276"/>
              <exon start="122457" stop="122517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGATATGGAGCAACGTCGG : GCATTTCAGAAGTTGATATATGTCTCAACTCTTGTATTTGGAGAATCATCTGCTTTCCTTTTACCTTGGAAACGTGTTTTCAAGGTTACTGATGCCCAG : GTTGATGTTGCTGTCAGGGACAATGCACAACGGTTGTATGCCTCCAAGCTTAAGTCTGTTGGGCGAG : ATATTGATGTGAACCAGCTGATCAGTTTGAGAGAAGCACAGCTTGCATATCGATTGTCCGATGAG : CTTGCACATGAGATGCTTAAGGAGCATGCAAGAAAGCTTGTTGAGGAAATCATATCAACTGCTGTTGGCATATTGAAGTCAAGGACAAGAGCAAC : GGAACCCACGCGTGTCATTGAGGAACTTGATAAGGTATTGTCATATAATAATTTGCTAATCTCATTGAAGAACCATGCTGATGCTAGTCGCTTTGCTCCTGGCATTGGGCCAGTTTCCTTAGTAG : GAGGGGAGTATGATGGTGATAGGAAGATGGATGACCTAAAACTTCTTTACAGAGCATATGTTACAGATTCTTTGTCAAGTGGTCGGATGGAAGAAGACAAG : CTTGCTGCTTTGAACCAATTGAGAAATATATTTGGTTTGGGGAAACGAGAAGCAGATACAATCACATTGGATGTAACCTCAAAGGTATACCGTAAACGACTAGCTCAAGCTGTTACCAGTGGTGAATTAGAAGCGTTCGAAAGCAAAGCAGCCTATCTTCAAAACCTTTGTGAAGAATTAATTTTTGATC</gDNA_template>
            <first_frame> G  D  M  E  Q  R  R  :  A  F  Q  K  L  I  Y  V  S  T  L  V  F  G  E  S  S  A  F  L  L  P  W  K  R  V  F  K  V  T  D  A  Q  :  V  D  V  A  V  R  D  N  A  Q  R  L  Y  A  S  K  L  K  S  V  G  R   : D  I  D  V  N  Q  L  I  S  L  R  E  A  Q  L  A  Y  R  L  S  D  E  :  L  A  H  E  M  L  K  E  H  A  R  K  L  V  E  E  I  I  S  T  A  V  G  I  L  K  S  R  T  R  A  T :   E  P  T  R  V  I  E  E  L  D  K  V  L  S  Y  N  N  L  L  I  S  L  K  N  H  A  D  A  S  R  F  A  P  G  I  G  P  V  S  L  V   : G  G  E  Y  D  G  D  R  K  M  D  D  L  K  L  L  Y  R  A  Y  V  T  D  S  L  S  S  G  R  M  E  E  D  K  :  L  A  A  L  N  Q  L  R  N  I  F  G  L  G  K  R  E  A  D  T  I  T  L  D  V  T  S  K  V  Y  R  K  R  L  A  Q  A  V  T  S  G  E  L  E  A  F  E  S  K  A  A  Y  L  Q  N  L  C  E  E  L  I  F  D  </first_frame>
            <second_frame>  E  I  W  S  N  V  G :   H  F  R  S  *  Y  M  S  Q  L  L  Y  L  E  N  H  L  L  S  F  Y  L  G  N  V  F  S  R  L  L  M  P  R :   L  M  L  L  S  G  T  M  H  N  G  C  M  P  P  S  L  S  L  L  G  E  :  I  L  M  *  T  S  *  S  V  *  E  K  H  S  L  H  I  D  C  P  M  S :   L  H  M  R  C  L  R  S  M  Q  E  S  L  L  R  K  S  Y  Q  L  L  L  A  Y  *  S  Q  G  Q  E  Q   : R  N  P  R  V  S  L  R  N  L  I  R  Y  C  H  I  I  I  C  *  S  H  *  R  T  M  L  M  L  V  A  L  L  L  A  L  G  Q  F  P  *  *  :  E  G  S  M  M  V  I  G  R  W  M  T  *  N  F  F  T  E  H  M  L  Q  I  L  C  Q  V  V  G  W  K  K  T  S :   L  L  L  *  T  N  *  E  I  Y  L  V  W  G  N  E  K  Q  I  Q  S  H  W  M  *  P  Q  R  Y  T  V  N  D  *  L  K  L  L  P  V  V  N  *  K  R  S  K  A  K  Q  P  I  F  K  T  F  V  K  N  *  F  L  I </second_frame>
            <third_frame>   R  Y  G  A  T  S   : G  I  S  E  V  D  I  C  L  N  S  C  I  W  R  I  I  C  F  P  F  T  L  E  T  C  F  Q  G  Y  *  C  P   : G  *  C  C  C  Q  G  Q  C  T  T  V  V  C  L  Q  A  *  V  C  W  A  R :   Y  *  C  E  P  A  D  Q  F  E  R  S  T  A  C  I  S  I  V  R  *   : A  C  T  *  D  A  *  G  A  C  K  K  A  C  *  G  N  H  I  N  C  C  W  H  I  E  V  K  D  K  S  N  :  G  T  H  A  C  H  *  G  T  *  *  G  I  V  I  *  *  F  A  N  L  I  E  E  P  C  *  C  *  S  L  C  S  W  H  W  A  S  F  L  S  R :   R  G  V  *  W  *  *  E  D  G  *  P  K  T  S  L  Q  S  I  C  Y  R  F  F  V  K  W  S  D  G  R  R  Q   : A  C  C  F  E  P  I  E  K  Y  I  W  F  G  E  T  R  S  R  Y  N  H  I  G  C  N  L  K  G  I  P  *  T  T  S  S  S  C  Y  Q  W  *  I  R  S  V  R  K  Q  S  S  L  S  S  K  P  L  *  R  I  N  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120467" stop="120487"/>
                    <exon start="120585" stop="120683"/>
                    <exon start="120896" stop="120962"/>
                    <exon start="121624" stop="121688"/>
                    <exon start="121872" stop="121966"/>
                    <exon start="122152" stop="122276"/>
                    <exon start="122457" stop="122557"/>
                    <exon start="131306" stop="131494"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDMEQRRAFQKLIYVSTLVFGESSAFLLPWKRVFKVTDAQVDVAVRDNAQRLYASKLKSVGRDIDVNQLISLREAQLAYRLSDELAHEMLKEHARKLVEEIISTAVGILKSRTRATEPTRVIEELDKVLSYNNLLISLKNHADASRFAPGIGPVSLVGGEYDGDRKMDDLKLLYRAYVTDSLSSGRMEEDKLAALNQLRNIFGLGKREADTITLDVTSKVYRKRLAQAVTSGELEAFESKAAYLQNLCEELIFD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="121649" e_stop="121688"/>
            <exon e_start="121872" e_stop="121966"/>
            <exon e_start="122149" e_stop="122276"/>
            <exon e_start="122457" e_stop="122557"/>
            <exon e_start="131306" e_stop="131501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.935" acc_prob="1.000" e_score="0.975"/>
          <exon-intron don_prob="0.977" acc_prob="0.996" e_score="0.989"/>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="0.984"/>
          <exon-intron don_prob="0.999" acc_prob="0.908" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="121649" e_stop="121688" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.935" acc_prob="1.000">
            <gDNA_intron_boundary i_start="121689" i_stop="121871" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="121872" e_stop="121966" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.996">
            <gDNA_intron_boundary i_start="121967" i_stop="122148" i_length="182"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="122149" e_stop="122276" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.976">
            <gDNA_intron_boundary i_start="122277" i_stop="122456" i_length="180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122457" e_stop="122557" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.908">
            <gDNA_intron_boundary i_start="122558" i_stop="131305" i_length="8748"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="131306" e_stop="131501" e_length="196"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121649" stop="121688"/>
              <exon start="121872" stop="121966"/>
              <exon start="122149" stop="122276"/>
              <exon start="122457" stop="122557"/>
              <exon start="131306" stop="131501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333968" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAGAGAAGCACAGCTTGCATATCGATTGTCCGATGAG : CTTGCACATGAGATGCTTAAGGAGCATGCAAGAAAGCTTGTTGAGGAAATCATATCAACTGCTGTTGGCATATTGAAGTCAAGGACAAGAGCAAC : CAGGGAACCCACGCGTGTCATTGAGGAACTTGATAAGGTATTGTCATATAATAATTTGCTAATCTCATTGAAGAACCATGCTGATGCTAGTCGCTTTGCTCCTGGCATTGGGCCAGTTTCCTTAGTAG : GAGGGGAGTATGATGGTGATAGGAAGATGGATGACCTAAAACTTCTTTACAGAGCATATGTTACAGATTCTTTGTCAAGTGGTCGGATGGAAGAAGACAAG : CTTGCTGCTTTGAACCAATTGAGAAATATATTTGGTTTGGGGAAACGAGAAGCAGATACAATCACATTGGATGTAACCTCAAAGGTATACCGTAAACGACTAGCTCAAGCTGTTACCAGTGGTGAATTAGAAGCGTTCGAAAGCAAAGCAGCCTATCTTCAAAACCTTTGTGAAGAATTAATTTTTGATCCACAAA</gDNA_template>
            <first_frame> F  E  R  S  T  A  C  I  S  I  V  R  *   : A  C  T  *  D  A  *  G  A  C  K  K  A  C  *  G  N  H  I  N  C  C  W  H  I  E  V  K  D  K  S  N  :  Q  G  T  H  A  C  H  *  G  T  *  *  G  I  V  I  *  *  F  A  N  L  I  E  E  P  C  *  C  *  S  L  C  S  W  H  W  A  S  F  L  S  R :   R  G  V  *  W  *  *  E  D  G  *  P  K  T  S  L  Q  S  I  C  Y  R  F  F  V  K  W  S  D  G  R  R  Q   : A  C  C  F  E  P  I  E  K  Y  I  W  F  G  E  T  R  S  R  Y  N  H  I  G  C  N  L  K  G  I  P  *  T  T  S  S  S  C  Y  Q  W  *  I  R  S  V  R  K  Q  S  S  L  S  S  K  P  L  *  R  I  N  F  *  S  T   </first_frame>
            <second_frame>  L  R  E  A  Q  L  A  Y  R  L  S  D  E  :  L  A  H  E  M  L  K  E  H  A  R  K  L  V  E  E  I  I  S  T  A  V  G  I  L  K  S  R  T  R  A  T :   R  E  P  T  R  V  I  E  E  L  D  K  V  L  S  Y  N  N  L  L  I  S  L  K  N  H  A  D  A  S  R  F  A  P  G  I  G  P  V  S  L  V   : G  G  E  Y  D  G  D  R  K  M  D  D  L  K  L  L  Y  R  A  Y  V  T  D  S  L  S  S  G  R  M  E  E  D  K  :  L  A  A  L  N  Q  L  R  N  I  F  G  L  G  K  R  E  A  D  T  I  T  L  D  V  T  S  K  V  Y  R  K  R  L  A  Q  A  V  T  S  G  E  L  E  A  F  E  S  K  A  A  Y  L  Q  N  L  C  E  E  L  I  F  D  P  Q  </second_frame>
            <third_frame>   *  E  K  H  S  L  H  I  D  C  P  M  S :   L  H  M  R  C  L  R  S  M  Q  E  S  L  L  R  K  S  Y  Q  L  L  L  A  Y  *  S  Q  G  Q  E  Q   : P  G  N  P  R  V  S  L  R  N  L  I  R  Y  C  H  I  I  I  C  *  S  H  *  R  T  M  L  M  L  V  A  L  L  L  A  L  G  Q  F  P  *  *  :  E  G  S  M  M  V  I  G  R  W  M  T  *  N  F  F  T  E  H  M  L  Q  I  L  C  Q  V  V  G  W  K  K  T  S :   L  L  L  *  T  N  *  E  I  Y  L  V  W  G  N  E  K  Q  I  Q  S  H  W  M  *  P  Q  R  Y  T  V  N  D  *  L  K  L  L  P  V  V  N  *  K  R  S  K  A  K  Q  P  I  F  K  T  F  V  K  N  *  F  L  I  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121650" stop="121688"/>
                    <exon start="121872" stop="121966"/>
                    <exon start="122149" stop="122276"/>
                    <exon start="122457" stop="122557"/>
                    <exon start="131306" stop="131500"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LREAQLAYRLSDELAHEMLKEHARKLVEEIISTAVGILKSRTRATREPTRVIEELDKVLSYNNLLISLKNHADASRFAPGIGPVSLVGGEYDGDRKMDDLKLLYRAYVTDSLSSGRMEEDKLAALNQLRNIFGLGKREADTITLDVTSKVYRKRLAQAVTSGELEAFESKAAYLQNLCEELIFDPQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="133918" PGL_stop="134570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133918" e_stop="134018"/>
            <exon e_start="134130" e_stop="134570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.535" e_score="0.970"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="133918" e_stop="134018" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.535">
            <gDNA_intron_boundary i_start="134019" i_stop="134129" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="134130" e_stop="134570" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133918" stop="134018"/>
              <exon start="134130" stop="134570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427614" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATAGATGGTTATGATACTGAAACGAAGAATGCTGTGAGGAAGGCAGCATATGGTTTACGATTAACCAGGGATGTTGCCATGACTATTGCTAGTAAGGCA : GTCAGAAAGATTTTCATCACTTACATTCAGAGGGTCCGAGGAGCTGGAAGCCGCACTGAATCAGCCAAAGAACTGAAAAAAATGATAGCCTTTAATAGTTTTGTTGCGTCTCAACTAGTTGCAGACATCAAGGGTGAATCATCTGATACACCGGCAGAAGAGACTCAACAAGAACAGATTCAACAAAACGAAGAGGAGGATGAGGAGTGGGAGTCCTTACAATCACTAAGAAAAGTAAAACCCAGCAAGAAGAATTTGAGAAAGGATATCCAGACCGAGATTACTCTCAAGGACGATCTTCCGGAAAGAGAGAGAACAGAACTTTACAAGACATACTTGCTCTTCTGTCTAACTGGGCAAGTTACTAAAATTCCTTTTGGGGTCCAGATCACCACAAAGAAGGATGACTCTGAATATGTTTTTCTAAGTCAACTTGGTAGC</gDNA_template>
            <first_frame> E  *  M  V  M  I  L  K  R  R  M  L  *  G  R  Q  H  M  V  Y  D  *  P  G  M  L  P  *  L  L  L  V  R  Q :   S  E  R  F  S  S  L  T  F  R  G  S  E  E  L  E  A  A  L  N  Q  P  K  N  *  K  K  *  *  P  L  I  V  L  L  R  L  N  *  L  Q  T  S  R  V  N  H  L  I  H  R  Q  K  R  L  N  K  N  R  F  N  K  T  K  R  R  M  R  S  G  S  P  Y  N  H  *  E  K  *  N  P  A  R  R  I  *  E  R  I  S  R  P  R  L  L  S  R  T  I  F  R  K  E  R  E  Q  N  F  T  R  H  T  C  S  S  V  *  L  G  K  L  L  K  F  L  L  G  S  R  S  P  Q  R  R  M  T  L  N  M  F  F  *  V  N  L  V   </first_frame>
            <second_frame>  N  R  W  L  *  Y  *  N  E  E  C  C  E  E  G  S  I  W  F  T  I  N  Q  G  C  C  H  D  Y  C  *  *  G   : S  Q  K  D  F  H  H  L  H  S  E  G  P  R  S  W  K  P  H  *  I  S  Q  R  T  E  K  N  D  S  L  *  *  F  C  C  V  S  T  S  C  R  H  Q  G  *  I  I  *  Y  T  G  R  R  D  S  T  R  T  D  S  T  K  R  R  G  G  *  G  V  G  V  L  T  I  T  K  K  S  K  T  Q  Q  E  E  F  E  K  G  Y  P  D  R  D  Y  S  Q  G  R  S  S  G  K  R  E  N  R  T  L  Q  D  I  L  A  L  L  S  N  W  A  S  Y  *  N  S  F  W  G  P  D  H  H  K  E  G  *  L  *  I  C  F  S  K  S  T  W  *  </second_frame>
            <third_frame>   I  D  G  Y  D  T  E  T  K  N  A  V  R  K  A  A  Y  G  L  R  L  T  R  D  V  A  M  T  I  A  S  K  A  :  V  R  K  I  F  I  T  Y  I  Q  R  V  R  G  A  G  S  R  T  E  S  A  K  E  L  K  K  M  I  A  F  N  S  F  V  A  S  Q  L  V  A  D  I  K  G  E  S  S  D  T  P  A  E  E  T  Q  Q  E  Q  I  Q  Q  N  E  E  E  D  E  E  W  E  S  L  Q  S  L  R  K  V  K  P  S  K  K  N  L  R  K  D  I  Q  T  E  I  T  L  K  D  D  L  P  E  R  E  R  T  E  L  Y  K  T  Y  L  L  F  C  L  T  G  Q  V  T  K  I  P  F  G  V  Q  I  T  T  K  K  D  D  S  E  Y  V  F  L  S  Q  L  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133920" stop="134018"/>
                    <exon start="134130" stop="134570"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDGYDTETKNAVRKAAYGLRLTRDVAMTIASKAVRKIFITYIQRVRGAGSRTESAKELKKMIAFNSFVASQLVADIKGESSDTPAEETQQEQIQQNEEEDEEWESLQSLRKVKPSKKNLRKDIQTEITLKDDLPERERTELYKTYLLFCLTGQVTKIPFGVQITTKKDDSEYVFLSQLGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="134911" PGL_stop="135684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134911" e_stop="135095"/>
            <exon e_start="135193" e_stop="135684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="0.989"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="134911" e_stop="135095" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="135096" i_stop="135192" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="135193" e_stop="135684" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134911" stop="135095"/>
              <exon start="135193" stop="135664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134911" stop="135095"/>
              <exon start="135193" stop="135634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134912" stop="135095"/>
              <exon start="135193" stop="135684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134912" stop="135095"/>
              <exon start="135193" stop="135675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135295" stop="135681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATATCTTCTCATCTGGTACTGGAGAGTTTGACGAAGAAGAGGTATATGAAAATGTCCCAAAAGATCTTAATATAAATGTTGAGAAGGCCAAAAAAGTTGTTCATGAACTAGCTCGTAGCCGATTATCAAACTCACTTATTCAGGCCGTGTCACTTTTAAGGCAGAGAAATCATAAAGCATTG : GTTTATTCTCTCAATGATCTGTTAGCTTGTGACAAGGCCGTTCCTGCAATCCCATTATCTTGGGAGGTACCAGAAGAACTGTCTGATCTGTTCATCGTATATTTGAAGAGTGATCCCCCACCAGAAAAGTTGTCCAGGTTACAGTATCTGTTAGGTATAAGTGATTCAACAGCGGAGACATTGAGAACTGTGAAGGATAGAGAACTACCAAATGGGGCAGGGGAAGAGGAGTTTGTATTTTAATTCTGTTATAGCTGCTACTGATAAATGTTTGTCAGTTGTAGATGGGGAGAGGAGAGACGGTTGCAGGTATTTTTTGTTAATTAATGCAAGTGAGGTGTATCTTTTTGCAGTGCTTTTAAGATGTGAGCTAGAAACATTGGGGTCTCATAGTGTTTTTAGTTACTACCCGTGCGGGGTTAAGTACCATATTAAGCATACGGAGATACCAATCAGTAATATTCATTTTCCCTTTTGATCTTGAACATCAAT</gDNA_template>
            <first_frame> L  I  S  S  H  L  V  L  E  S  L  T  K  K  R  Y  M  K  M  S  Q  K  I  L  I  *  M  L  R  R  P  K  K  L  F  M  N  *  L  V  A  D  Y  Q  T  H  L  F  R  P  C  H  F  *  G  R  E  I  I  K  H  W :   F  I  L  S  M  I  C  *  L  V  T  R  P  F  L  Q  S  H  Y  L  G  R  Y  Q  K  N  C  L  I  C  S  S  Y  I  *  R  V  I  P  H  Q  K  S  C  P  G  Y  S  I  C  *  V  *  V  I  Q  Q  R  R  H  *  E  L  *  R  I  E  N  Y  Q  M  G  Q  G  K  R  S  L  Y  F  N  S  V  I  A  A  T  D  K  C  L  S  V  V  D  G  E  R  R  D  G  C  R  Y  F  L  L  I  N  A  S  E  V  Y  L  F  A  V  L  L  R  C  E  L  E  T  L  G  S  H  S  V  F  S  Y  Y  P  C  G  V  K  Y  H  I  K  H  T  E  I  P  I  S  N  I  H  F  P  F  *  S  *  T  S   </first_frame>
            <second_frame>  *  Y  L  L  I  W  Y  W  R  V  *  R  R  R  G  I  *  K  C  P  K  R  S  *  Y  K  C  *  E  G  Q  K  S  C  S  *  T  S  S  *  P  I  I  K  L  T  Y  S  G  R  V  T  F  K  A  E  K  S  *  S  I   : G  L  F  S  Q  *  S  V  S  L  *  Q  G  R  S  C  N  P  I  I  L  G  G  T  R  R  T  V  *  S  V  H  R  I  F  E  E  *  S  P  T  R  K  V  V  Q  V  T  V  S  V  R  Y  K  *  F  N  S  G  D  I  E  N  C  E  G  *  R  T  T  K  W  G  R  G  R  G  V  C  I  L  I  L  L  *  L  L  L  I  N  V  C  Q  L  *  M  G  R  G  E  T  V  A  G  I  F  C  *  L  M  Q  V  R  C  I  F  L  Q  C  F  *  D  V  S  *  K  H  W  G  L  I  V  F  L  V  T  T  R  A  G  L  S  T  I  L  S  I  R  R  Y  Q  S  V  I  F  I  F  P  F  D  L  E  H  Q  </second_frame>
            <third_frame>   D  I  F  S  S  G  T  G  E  F  D  E  E  E  V  Y  E  N  V  P  K  D  L  N  I  N  V  E  K  A  K  K  V  V  H  E  L  A  R  S  R  L  S  N  S  L  I  Q  A  V  S  L  L  R  Q  R  N  H  K  A  L  :  V  Y  S  L  N  D  L  L  A  C  D  K  A  V  P  A  I  P  L  S  W  E  V  P  E  E  L  S  D  L  F  I  V  Y  L  K  S  D  P  P  P  E  K  L  S  R  L  Q  Y  L  L  G  I  S  D  S  T  A  E  T  L  R  T  V  K  D  R  E  L  P  N  G  A  G  E  E  E  F  V  F  *  F  C  Y  S  C  Y  *  *  M  F  V  S  C  R  W  G  E  E  R  R  L  Q  V  F  F  V  N  *  C  K  *  G  V  S  F  C  S  A  F  K  M  *  A  R  N  I  G  V  S  *  C  F  *  L  L  P  V  R  G  *  V  P  Y  *  A  Y  G  D  T  N  Q  *  Y  S  F  S  L  L  I  L  N  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134913" stop="135095"/>
                    <exon start="135193" stop="135435"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIFSSGTGEFDEEEVYENVPKDLNINVEKAKKVVHELARSRLSNSLIQAVSLLRQRNHKALVYSLNDLLACDKAVPAIPLSWEVPEELSDLFIVYLKSDPPPEKLSRLQYLLGISDSTAETLRTVKDRELPNGAGEEEFVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 207 chains have been computed
$ 
$ memory statistics:
$ 108304 bytes spliced alignments in total
$ 14 spliced alignments have been stored
$ 7736 bytes was the average size of a spliced alignment
$ 10736 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2147 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 251 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:25:59
-->
