<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:26:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571342" ref_strand="+" ref_description="SGN-U571342 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|28261781|ref|NP_783294.1| (e_value=3e-41) Ycf2 [Atropa belladonna]; (*ATH) ATCG00860.1 (e_value=2e-35) | Symbol: YCF2.1 | hypothetical protein | chrC:86474-93358 FORWARD | Aliases: YCF2.1; (*SWP) sp|Q3C1N4|YCF2_NICSY (e_value=2e-42) Protein ycf2 OS=Nicotiana sylvestris GN=ycf2-A; ">
      <seq>gatccgatccgcaaggaccatgattgggaattgtttgatcgtctttctctgaggaagagtcgaaatagaatcaacttgaattcgggaccgctattcgaaatcttagtgaaacactggatttcttatctcatgtctgcttttcgtgaaaaaataccaattgaagtggagggtttcttcaaacaacaaggggctgggtcaactattcaatcaaatgatattgagcatgtttcccatctcttctcgagggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="-" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="1097" stop="253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="797" g_stop="553" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="-" ref_id="SGN-U571342" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="797" e_stop="553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCGATCCGCAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTCTGAGGAAGATTTGAAATAGAATCAACTTGAATTCAGGACCGCTATTCGAAATCTTAGTGAAACACTGGATTTCTTATCTCATGTCTGCTTTTCGTGAAAAAATACCAATTGAAGTGGAGGGTTTCTTCAAACAACAAGGGGTTGGGTCAACTATTCAATCAAATCATATTGAGCATGTTTCCTATCTCTTCTCGAG</genome_strand>
        <mrna_strand>GATCCGATCCGCAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTCTGAGGAAGAGTCGAAATAGAATCAACTTGAATTCGGGACCGCTATTCGAAATCTTAGTGAAACACTGGATTTCTTATCTCATGTCTGCTTTTCGTGAAAAAATACCAATTGAAGTGGAGGGTTTCTTCAAACAACAAGGGGCTGGGTCAACTATTCAATCAAATGATATTGAGCATGTTTCCCATCTCTTCTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594060" ref_strand="+" ref_description="SGN-U594060 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147778480|emb|CAN69431.1| (e_value=2e-91) hypothetical; (*ATH) ATMG00710.1 (e_value=1e-17) |; (*SWP) sp|P10978|POLX_TOBAC (e_value=1e-57) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>gctttctggtaaggcaagggagaatggaattgctgagaggatgaacagaacattgaatgagcgtgcaaggagtatgaggatacactgtgggctgcccaaaacactttgggcggatgctgtgagcaccgctgcatacttgatcaacaggggaccatcagttcctctagggttcaagattccaaaggaggtgtggacaggaaaagaactcaagtactcacacttgaggacttttggttgcactgcttatgttcatgttgatccagaaaagagagacaagcttgatgctaaggctgtgaagtgttacttcataggatatggttctgatttgtttggttacaggttttgggatgacaagaacagaaagatcctgagacattgtgacgtgacatttgatgagtctgtcctgtacaaggacatagagcagaaggttctagagattacaaagcaagtgggagttgaggttgagttgaagaagagtaaccccagagatgtcaaagcagatactcaaccaactcctactaaagaatctgaagtggagcaagttacacctgagcaggttttaaggagatcatccagatccatcagggcaccagataggtattcaccttcattacactatctattgctgactgatgaagggaaaccaaagtcttttgatgaggccctacaggtgcaggattcgatcaagtgggagcaagtcatggatgatgagatgaggtcacttgagaagaacaacacatgggtgttgactgagctacctgtagggaagagagctttgctgaacaagtgggtgtacagaaatcagactgaaccagatggaaaaaaaaggttcaaggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="3249" stop="4686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3547" g_stop="4382" g_length="836"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="835" r_length="835" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-U594060" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3547" e_stop="4382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCTAGTAAGGCAAGGCAGAATGGAATTGCTAAGAGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGGATACACTGTGGGCTGCCCAAAACATTTTGGGCGGATGCTGTGCGCACAGCTACATACTTGATTAACCGGGGACCATCAGTTCCTTTAGGGTTCAAGATTCCAGAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCACACTTGAGGACTTTTGGTTGCACTGCTTATGTCCATGTTGATCCAGAAAAGAGAGACAAGCTTGATGCCAAGGCTATGACGTGTTACTTCATAGGATATGGTTCTGATTTGTTTGGTTACAGGTTTTGGGATGACAAGAATAGAAAGATCTTGAGACATTGTGACGTGACATTTGATGAGTCTGTTCTGTACAAGGACAGAGAGCAGAAGGTTCTAGAGATTACAAAGCAAGTGAGAGTTGAGGTTGAGTTGGAGAAAAGTAACCCCATAGATGTCGAAGCAGATACTCAACCAACTCCTACTGTAGAATCTGAAGTGAAGCAAGTTATACCAGAGCAGGTTTTAAGGAGATCATCCAGAACCATCAGGGCACCAGATAGGTATTCACCTTTATTACACTATCTATTACTGACTGATGAGGGGGAACCAGAGTATTTTAATGAGGCCCTACAGGTGGAGGATTCAATCAAGTGGGAGCAAGCCATGGATGATGAGATGAGGTCACTTGAGAAGAACGACACATGGTTGTTGACTGAGTTACCTGCTGGGAAGAGAGCTTTGCTGAACAAGTGGGTGTTCAGAATCAAGACTGAACAAGATGGCAAAAAAAAAATTCAAG</genome_strand>
        <mrna_strand>GCTTTCTGGTAAGGCAAGGGAGAATGGAATTGCTGAGAGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGGATACACTGTGGGCTGCCCAAAACACTTTGGGCGGATGCTGTGAGCACCGCTGCATACTTGATCAACAGGGGACCATCAGTTCCTCTAGGGTTCAAGATTCCAAAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCACACTTGAGGACTTTTGGTTGCACTGCTTATGTTCATGTTGATCCAGAAAAGAGAGACAAGCTTGATGCTAAGGCTGTGAAGTGTTACTTCATAGGATATGGTTCTGATTTGTTTGGTTACAGGTTTTGGGATGACAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTGTCCTGTACAAGGACATAGAGCAGAAGGTTCTAGAGATTACAAAGCAAGTGGGAGTTGAGGTTGAGTTGAAGAAGAGTAACCCCAGAGATGTCAAAGCAGATACTCAACCAACTCCTACTAAAGAATCTGAAGTGGAGCAAGTTACACCTGAGCAGGTTTTAAGGAGATCATCCAGATCCATCAGGGCACCAGATAGGTATTCACCTTCATTACACTATCTATTGCTGACTGATGAAGGGAAACCAAAGTCTTTTGATGAGGCCCTACAGGTGCAGGATTCGATCAAGTGGGAGCAAGTCATGGATGATGAGATGAGGTCACTTGAGAAGAACAACACATGGGTGTTGACTGAGCTACCTGTAGGGAAGAGAGCTTTGCTGAACAAGTGGGTGTACAGAAATCAGACTGAACCAGATGG-AAAAAAAAGGTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589884" ref_strand="+" ref_description="SGN-U589884 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="14792" stop="16105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15091" g_stop="15805" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-U589884" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15091" e_stop="15805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGGTCTTCGTTCCAAAACACTTCAACTCTTGGAAAATGGGTACTGGGATTATTTCTCTGAACTTCATGACGAACCTGCAGGACGGACCGTCATAGACACGACGAACCGTCACAAGCTTTGTAGCCCCACACTTGTTCAGACTTCCCCATCTTCCTTCAGCAACTGCACTACGCTGCCACCTACGGAACGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTGGCTCAAAATCTCCGCGTTCAGCTTTGGACAGATTTCCTGCAAAACAAAAAGAAACTTATATAAAAATTAGCGTAAAATGGGTTTTGGACACACTAAACATAAGGAAAAAGTATTAATAATACTGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCATTTTTTGTCCTCAAGCGACGCACTATGACTCAATACAAAATCTTTGTACAATAGTATACATGTTTTATCCTTTGCAATCGTTTGGATATCAATTCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTATGTGGGATTGGAACATGACACAGACTCACCATGCACTAACACCTATTCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTGGTATTGCAACTAGTGTCCTCACTTTAA-ACAAAATCCTCATTTTTTACACAATGATTTCAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589884" ref_strand="+" ref_description="SGN-U589884 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="-" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="93174" stop="91860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92874" g_stop="92160" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="-" ref_id="SGN-U589884" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92874" e_stop="92160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTC-TCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACT-GGATCACCTCTTCTATCTCCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCATAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACAGGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTCTCTCAAAATCTCCGCATTCAGCTTTAGACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTATACAATCTTTGTACAATAGTATTCATGTTTTTATCCTTTGCAATCATTTGGCTACCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATTCGAACATGACACAGACTCAACATGCACTAACA-CTATTCTCTTCAATTTCTCACCGAGAGGCTAACAATTCCGGTATAGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAA-GGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATG-TTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571378" ref_strand="+" ref_description="SGN-U571378 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157336982|emb|CAO21328.1| (e_value=5e-68) unnamed; (*ATH) AT2G30350.2 (e_value=1e-60) |; (*SWP) sp|Q8BX32|GIYD1_MOUSE (e_value=1e-25) GIY-YIG domain-containing protein 1 OS=Mus musculus GN=Giyd1; ">
      <seq>aacggtcgaatttacccccaaacgcttcgctgtctgcagagtttcacagagagagagagagagatggggaaacggaaggagcagaagaaagtttgtcatcgtgatgatgaggataaagaagtagaaggaagcaggttctttgcctgttacttgcttacatctatgtgccccagattcaaaggccacacttacatcggatttacagtaaatcctcgccgtagaattcgacagcacaatggagaggtaaggatgggtgcattgaggactaagaggaagcgtccctgggagatgattttatgcatatatggcttccctaccaatgtatcagccctccagtttgaatgggcctggcagcatccagtagaatcccgtgcagttagacaggctgcagcatcattcaaaactcttggaggagttgctaataagataaaattggcatatacaatgcttactctccctgagtggcaaaggtatgtaatttgttttgcctgaccagtctgattggaattttttctcattaagttatgtcttctatgttcagcctgaacctcacggtaaatttcttctccacaaaatataagatgcattcagctggttgtcccagtcttccagagcacatgagagtccatatttgtgcactgnatgaanttccctgttatacaggaattgacaggnnngagtgggaaaatatttgtgcactggatgaanttcccagttatacngganngacngggnngagtgggaaaataggna</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="103768" stop="105506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104068" g_stop="104264" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104265" i_stop="104420" i_length="156">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104421" g_stop="104559" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="336" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104560" i_stop="104817" i_length="258">
            <donor d_prob="0.288" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104818" g_stop="105235" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="753" r_length="417" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-U571378" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104068" e_stop="104264"/>
          <exon e_start="104421" e_stop="104559"/>
          <exon e_start="104818" e_stop="105235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTCGAATTTACCCCCAAACGCTTCGCTGTCTGCAGAGTTTCACAGAGAGAGAGAGAGAGATGGGGAAACGGAAGGAGCAGAAGAAAGTTTGTCATCGTGATGATGAGGATAAAGAAGTAGAAGGAAGCAGGTTCTTTGCCTGTTACTTGCTTACATCTATGTGCCCCAGATTCAAAGGCCACACTTACATCGGGTTCGTTTCTGGGTTCTATTTGTTTTTCCTTAATAGATAGATGTAACTGAAGCTACTTAGAATTATTATACTAAGAGATCTTTCTTTTTTCTCTGGATCCAATGATTATATTGGTTTTGGCTTCGCTAATCAATTCGCAATTGTTTGTTTGGACAGATTTACAGTAAATCCTCGCCGTAGAATTCGACAGCACAATGGAGAGGTAAGGATGGGTGCATTGAGGACTAAGAGGAAGCGTCCCTGGGAGATGATTTTATGCATATATGGCTTCCCTACCAATGTATCAGCCCTCCAGGTAATCTTAATCTACTATTTCCAAATGCAGAGGGAGGGAGGGAGGGTATTTGTATTTTTGCCATCCAAACATTCCAGTTTACCACATCCAACTCCAAGAGAAACCAATCCAAACGCCATATACTGTTTTTCTGGTCACTTAATGCACTGCTATTTGTTGCCTTAATTTTCATGTAAAATTTATTCACTTCAGTTGATGCTTGCTAATCTGAAACCTGAATTTGCTACACATGTCAATTTTTTCTCCTCTTTATTGCAGTTTGAATGGGCCTGGCAGCATCCAGTAGAATCCCGTGCAGTTAGACAGGCTGCAGCATCATTCAAAACTCTTGGAGGAGTTGCTAATAAGATAAAATTGGCATATACAATGCTTACTCTCCCTGAGTGGCAAAGGTATGTAATTTGTTTTGCCTGACCAGTCTGATTGGAATTTTTTCTCATTAAGTTATGTCTTCTATGTTCAGCCTGAACCTCACGGTAAATTTCTTCTCCACAAAATATAAGATGCATTCAGCTGGTTGTCCCAGTCTTCCAGAGCACATGAGAGTCCATATTTGTGCACTGGATGAACTTCCCTGTTATACAGGAATTGACAGGGATGAGTGGGAAAATATTTGTGCACTGGATGAACTTCCCAGTTATACAGGAATTGACAGGGATGAGTGGGAAAATAGGGA</genome_strand>
        <mrna_strand>AACGGTCGAATTTACCCCCAAACGCTTCGCTGTCTGCAGAGTTTCACAGAGAGAGAGAGAGAGATGGGGAAACGGAAGGAGCAGAAGAAAGTTTGTCATCGTGATGATGAGGATAAAGAAGTAGAAGGAAGCAGGTTCTTTGCCTGTTACTTGCTTACATCTATGTGCCCCAGATTCAAAGGCCACACTTACATCGG............................................................................................................................................................ATTTACAGTAAATCCTCGCCGTAGAATTCGACAGCACAATGGAGAGGTAAGGATGGGTGCATTGAGGACTAAGAGGAAGCGTCCCTGGGAGATGATTTTATGCATATATGGCTTCCCTACCAATGTATCAGCCCTCCAG..................................................................................................................................................................................................................................................................TTTGAATGGGCCTGGCAGCATCCAGTAGAATCCCGTGCAGTTAGACAGGCTGCAGCATCATTCAAAACTCTTGGAGGAGTTGCTAATAAGATAAAATTGGCATATACAATGCTTACTCTCCCTGAGTGGCAAAGGTATGTAATTTGTTTTGCCTGACCAGTCTGATTGGAATTTTTTCTCATTAAGTTATGTCTTCTATGTTCAGCCTGAACCTCACGGTAAATTTCTTCTCCACAAAATATAAGATGCATTCAGCTGGTTGTCCCAGTCTTCCAGAGCACATGAGAGTCCATATTTGTGCACTGNATGAANTTCCCTGTTATACAGGAATTGACAGGNNNGAGTGGGAAAATATTTGTGCACTGGATGAANTTCCCAGTTATACNGG-ANNGACNGGGNNGAGTGGGAAAATAGGNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600720" ref_strand="+" ref_description="SGN-U600720 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aaacctttattattcaacttgtaccccctcagacccctatcctcttcttcttcttcctagttccaaactccggacgacttggttaaaccctacttgaacatcaactagttattagaagaggtagtagatatgaacccatcatcacttctcctccctatcaatcaacctcctccngtcaacactttccgctctcaatttctcaatccnacacctctccgtcttacccctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="118288" stop="119117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118588" g_stop="118817" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-U600720" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118588" e_stop="118817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTTATTATTCAACTTGTACCCCCTCAGACCCCTATCCTCTTCTTCTTCTTCCTAGTTCCAAACTCCGGACGACTTGGTTAAACCCTACTTGAACATCAACTAGTTATTAGAAGAGGTAGTAGATATGAACCCATCATCACTTCTCCTCCCTATCAATCAACCTCCTCCTGTCAACACTTTCCGCTCTCAATTTCTCAATCCTACACCTCTCCGTCTTACCCCTAA</genome_strand>
        <mrna_strand>AAACCTTTATTATTCAACTTGTACCCCCTCAGACCCCTATCCTCTTCTTCTTCTTCCTAGTTCCAAACTCCGGACGACTTGGTTAAACCCTACTTGAACATCAACTAGTTATTAGAAGAGGTAGTAGATATGAACCCATCATCACTTCTCCTCCCTATCAATCAACCTCCTCCNGTCAACACTTTCCGCTCTCAATTTCTCAATCCNACACCTCTCCGTCTTACCCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564808" ref_strand="+" ref_description="SGN-U564808 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157336992|emb|CAO21338.1| (e_value=2e-93) unnamed; (*ATH) AT1G06950.1 (e_value=9e-82)  Symbol: TIC110 | Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis. | chr1:2130154-2135664 REVERSE | Aliases: F10K1.33, ATTIC110, TI... ; ">
      <seq>gtactcgtgttttcaaggttactgatgcccaggttgatgttgctgtcagggacaatgcacaacggttgtatgcctccaagcttaagtctgttgggcgagatattgatgtgaaccagctgatcagtttgagagaagcacaacttgcatatcgattgtccgatgagcttgcacatgagatgctcaaggagcatgcaagaaagcttgttgaggaaatcatatcaactgctgttggcatattgaagtcaaggacaagagcaaccagggaacccacacgtgtcattgaggaacttgataaggtattgtcatataataatttgctaatctcactgaagaaccatgctgatgctagtcgctttgctcctggcattgggccagtttccttagtaggaggggagtatgatggtgataggaagatggatgacctaaaacttctttacagagcatatgttacagattctttgtcaagtggtcggatggaagaagacaagcttgctgctttgaaccaattgagaaatatatttggtttggggaaacgagaagcagatacaatcacattggatgtaacctcaaaggtataccgtaaacgactagctcaagctgttaccagtggtgaattagaagcgttcgaaagcaaagcagcctatcttcaaaacctttgtgaagaattaatttttgatccacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="120352" stop="131800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120652" g_stop="120683" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120684" i_stop="120895" i_length="212">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120896" g_stop="120962" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="99" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120963" i_stop="121623" i_length="661">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121624" g_stop="121688" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="164" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121689" i_stop="121871" i_length="183">
            <donor d_prob="0.935" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121872" g_stop="121966" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="259" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121967" i_stop="122148" i_length="182">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122149" g_stop="122276" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="387" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122277" i_stop="122456" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122457" g_stop="122557" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="488" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122558" i_stop="131305" i_length="8748">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="131306" g_stop="131500" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="683" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-U564808" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120652" e_stop="120683"/>
          <exon e_start="120896" e_stop="120962"/>
          <exon e_start="121624" e_stop="121688"/>
          <exon e_start="121872" e_stop="121966"/>
          <exon e_start="122149" e_stop="122276"/>
          <exon e_start="122457" e_stop="122557"/>
          <exon e_start="131306" e_stop="131500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACGTGTTTTCAAGGTTACTGATGCCCAGGTAGCGGATTATTTATCACTCTCTCCCTCTTTGTGGAGTATTCAGATTGTGCAGTGGCATGTCCTGCTTGTGTGGTTTTAACATTTCTGTATTTTGATTTGAGGTTCCTGTCATTTGTCTCTTTCCCTGCCCCCTTCATTTATGTAATATTAGATTTCTATATAGTGCGACCCCCTGTGTCCTTTTACTCGTTTTAACATTTTTGCCATTAGGTTGATGTTGCTGTCAGGGACAATGCACAACGGTTGTATGCCTCCAAGCTTAAGTCTGTTGGGCGAGGTAAGTTTTCTCTATTGATGCCTTTGAAGGCACTTTTACTTCTAACGTAACCTATTCATAGGAAACCATTTTACTAGTTTTCTTTTGCATACCTAATTAAACTAATGCTCTTCCAAACTACTTGTCGATATTCTTGGGTATGTTTTCTAAAATTTTCGATCTCTATTAAACTGATTCTAATAAATCTGTATATGTGCTTAAATTTGGCTTTTTTGTGGTATGTGGTGCTTAATCCTGAACAAAGATGAATCATACCATGAGGCTCCACATATGTGGCATGGGTTTAGTATGTTCTATTCATGCACTGAGTAGAGACTTTTTTGAAGTCTTTCTGTCGCTTCAAATTTCTTTGCATTTTAGTGATATATCCTATTGGTTTATGGGTTTTGAGAGCCTTCTGACGATAGCTCTTGAATCTGGACATCTCGTTATTGCTTAGAGTAGAGGGAGTCTTTGTATGATTCCACCAATCTTATATGGAAAATGCTAATTCTTTCATTATCTTCACGAACTCCACTCTTAGTAGCATCTACCTTGAAATTCTATGTTATGGACTTGTGGCGGTGTCAGGGTGATATCACTTGTTTCTTTTCATGATTTAATTCCTGCACTGCACTTCAGTGGTTTTGCATGGTTAATTTAATTACTTTACCTGTTCCAGATATTGATGTGAACCAGCTGATCAGTTTGAGAGAAGCACAGCTTGCATATCGATTGTCCGATGAGGTAGTGCCTAAAAAAATTATCATAATTCTGCTTCATATCCCTGTAGAAATACCTTTTTCTCCTCGAAAAAGGAGATAAGATTGCTATGAATTTGTTGCACAATATTCATGATTGAATTTACTTTGTCCATGTATTCTGTCATCAAATATATGCACAATCATGTCCATTTCTTTCTGTTTGCAGCTTGCACATGAGATGCTTAAGGAGCATGCAAGAAAGCTTGTTGAGGAAATCATATCAACTGCTGTTGGCATATTGAAGTCAAGGACAAGAGCAACGTAAGGTCTTTTAAGTATATTTAACCTCTTAAAAGGGAACTTCCATTTTACTGGATAAATTTTTTACCAAGCAATTCTAGTTAATAGAAATGGGACTGCTCCTATAATTTCTAGCAAGACAGAATGTATCATATTCTTTGCTTGTATCATTTGTTTAATTCAAACTGATTGGGTTTGTTTAGCAGGGAACCCACGCGTGTCATTGAGGAACTTGATAAGGTATTGTCATATAATAATTTGCTAATCTCATTGAAGAACCATGCTGATGCTAGTCGCTTTGCTCCTGGCATTGGGCCAGTTTCCTTAGTAGGTATGTACGTCGATGATCTTGTCTGACTCTTTTTATAGAACTTGTTAGAAGTTGCGGGTTTCTATCAAGTCTCAAGTGAAATCCTTTCATGGAGCTCTTTCTTTCAGCTGTTTTTATCTCAGTTTTTTAGCTGAAGTTAGTTTTCCCTTTTCTTCATTCTTTTTCTTCCTGCTCCTTCAGGAGGGGAGTATGATGGTGATAGGAAGATGGATGACCTAAAACTTCTTTACAGAGCATATGTTACAGATTCTTTGTCAAGTGGTCGGATGGAAGAAGACAAGGTAGGTGGTTTTAATTTCTCTCTGCTTCATTTCTTCTGCTTTTTCAGGTTTTTTGGAATTATTATTTTCTACTTGTTTGCCAAAATGGCCGGAAAATTTGAATCTCTCGTGCATTTGTCAAACTAAAGTTATGTTAAACATATATATGAATGGACTGGAAGTTAAAGGAACATACTCCTTTTCTCTTATCCTGCTTCAATATGTTATTCTGGTATGGTAGGACAATAATGGGTATACTAGTAGATTTGTTTGCCAATGGAAAATGGCTTGTGCCCACCCACTTTTGTCGATAACTGGACAGGAGTAGACACATATTCTTTTCTCTTTTCCAGCTGTTCTGTGGTTGAAATGCTGATATAGAAAGCCAGGATGTCCCTACATTTTACTCCCGTATTTTGTATTTTCTGTCCTCCTGTAATGACCCCTCTATGTTCTATGATGAACTAGAAGCAAAAAATGGATGATGTGGAGAAAAAGCAGAATATTGTGGTTTTGGACCAAAATTACAAGTTGTTGAATCAAGAGTATTGATATGACCTTAATGTTTTGGACACTAGAAAGAGAGTACACTGTGCAAGCTGGTTTAAAGTAAGCTTTGACATTGCCAACTGAGGTTCTTTTATTAATGTGCTCAATGAAATGGCTCTCAAGAGAAAATGGACTAGATGGTTCTTTTTTTTTCCTGAAGTAAGATATGTTAACAAGGCATCAGGTGGATGCAGAGTAGTTGCATAAGAGAGTCATGGTTAACTATGAGAACAAAAACTTCTTTTCTAAGTCAGGGAGTTAACCAGAAAACAAAACCATGATCTCTAAACCATAGTAAGGGAGCTGATGAAATCTAAAAGGAAATTATACCATTTAAAGGGGATAGATTGAGGACAAGATGGATTTATTTTTGCATAAGCACATTTAGTCTTTTTTGGTCAAAACCTTAAATATTTCGTTATGCCCAAAGTATCGAACTTTACAAAACTGCCAACACATTAGACTCAAGTCGGCTCGGCTCCCTTGTACTCTTTCAATACAAACGACTATAAGCAGAACAATTATTTAACAATGTAAAATTAACTTTGAACAATTATCTATAAGCTATTCTGGGAAGTGTTAAGCTGTTCTTACTTTGCTAACCATATGCTGTGTCTTTGTCCCTCTATGTGCACCTGGACTGCTATTTCTCGAAGCCTTCGTGTACAACAGAATCCAAACATTCCTGCTTGCGGTCTGCTATTGCTTTCCTGATTCCAGTCGCCAATAGACCTAGTGTGGTCCAACCATTTCACAAGAAATGGCCTTATGAATGCCGAGTATGGGCAATCAAAAAATAGGTGCTCAGGTGTCTCCTCCACTTGATCATTGCATAGTAAACAATCAGTGGACCCTACTTTTCCCCATTTCTGCACTCTATCCACTGTTGACAGTTTTCTATGTAAAGCCACCATAGAATGAACTACTGCCTTGGGATCTGACCTTGAACCAACACCAATTTACTCCATATGACTTTAAGGTGTTGTGCCATCATTGGCACATACCTTTTCTTTATACTATACTCCTTTGAGTCAATAAGTACTTATAGCTTATTATGTAAGGTACTATAATAAGCAACTCCTGGCATGAAAAATTTCCTCAATTAAGCAGGCCTGTTTAGGAGTTTTCATTCTCTCCAAGTGGCTTTTATATAGAATGTATGTGCCCACAACACCCATTGTTTGTCCTTCTGCTCTACTTGCTAGAGGAGCTTACATATTGCTGCCTTGTTCCATGTAAGTATATCAATCACATTCAGACCCCCTGCTGTCTTGGGCTTACAGTCCGTCTCCCATGCAACCAAGGTATCTTTTGAGAAGTCATTGCTCCCTTCCATGAGAAAGTTTTACTCACTGTTGTAAGCATCGTAATGATCTTCTTTTGTAACAAGAATATTTGGGACCAATATGTTTGCATTTGAAACAACACTCTTCACTAGCTGTAATCTACCACGGTAGGACAACAACTTGGAGGACCAACATTTGATTCTTGCTCATTTTTTCAACTATGGGCAGACACTATTGAATTGAGAGCTTTCTGTTTGAATCTGAGATTGGGACTCCCAAATACTTGAGCGGGAGCCCTCCTAATGATAAGTTCAACTCACAATAATTCTCTCCTTAAATTTAGGAGGGACATCTTAAATATATAAAGAACTTTTCTCCATATTGGCATGCAGGCCTGAGACCTCAGAGAATTGTTTGAAGGTATTAAGCAGTAGCTTAATGGAGTCTTCATTTGACTTACAACTGATTGATATATCATCAGCAAAACATACATGAATAATACCCAACTTACCACATCTTCGATGGTAGTTGAACTGAAGTTGTGCTTCAGCTGTTGAAGTGTTTTGTGCAGATACTCCATGGCTAATACAAACACATATGGTTACATGGGGTCCTCTTGTCTCAACCTTTTGTTGCTTGGAATTGTTGAGTCAGACCACCATTAATCAGCAAGCAATACTATCCTGAGCAATGGCCATCTATTGAGTCATATGCTGTTCTAATGTTCACACTTATAGTATATCTAGGCTAAGTTGCTCGGACTCGAGTGCGGTTATCCGAAACGGATGCGAATTCGATTCTCGGATTCGACTAAATTCAAATTTTAAGATTCGTGGGTGCGAATCCGATTATGGATACGGGTGCGGGGACAACTAATTTTTTTTTAATATTGTAAAAATATAGTTTTATATATACTAAACAAATATATAAATACACAAATACACACACTAAACAACTGCATAAATATAATTTATTTTATAAAAAAGTACACTTATTTCGGGAAAACCTTCGTTTTTAAATAAAAAAGTACACTTATTTCGGGAAAACCTTCGTTTCTGTCGCTTGGAGTTCTTTTTTAAGAAAAAGTGAAAAGACCCAGTACTTTTCTCTGTATTTACTTCGCTTTTTCAAGAAAAAAATTTCTTTCTTCTCTTCTATTCTCTGTATTTCTCAAGCTGGAAACTTATTTTCTCTACTTCCACCTTTTCTCTATACTTTTTCAACGATCGATCGAATCTGACACGCATCCCGCACCCGCGCGTGCACCAGTGTTGCGTTGAGATGGGTTTGCCTGCAAATATGAAGAGTCAGCGCGCTTTTACGTACTGATTTCGAAAATTGAAGGTTTCGAAGCGGATTTCACAACTTTGGCAATTTTTATTAAAATTGTTTTTTGGAAAAACATGTAATTTCAGGAGTCGCCACTTAATTTTTAGAAAAATTAGGAAGACCGTTTTAGAAGGAATTATTTAAAAGAAAACGTTTAAATAAAATCAGTGTTTTGGGTACGGTTCAACTAATTCTCTAAGGAATGGTTTAGGCACCTTAGAGAATCCGCTAACACGCGGTTGACCGACGGATTTTAAAATTGGCTAATTTTAAAAAAAAAACTTAAGAATACTTGAAAAATCTTATTTATTTATTTATTTCAAAGTACTCAAAAATTCTTGTTGAAAACTTAGATAGATATCTTTTGATACTTCTAAAAGTCTCAAGATTTATCTTTAACTTTTGTCCATAGTCATATTTTGAACCATACAAATAATTCAACACATAAACATGAATTATAAGACTTTGTTTAACAACTATGAAAGATCCTTAAGTCATTCATACAAAGTTCTAAGTTAAATTAAAAGACAACTAATTTAGTTTAAGAAACTTAACTATTTTATCCTATTCAAAAATTTGAACTAAATAGTTAGTTCAAACTTGTAAACATGGATTCAAATCTTTTTAATAACTATGAAAGAACATAATAGATTCTTAAGTTATTCTAATAAGCTTAAGCTGTCTAACTTAAAATGAGTCAATGAGTGATAAGAAACAAGAAACGATTTAAAAAATAACATTGATAACTCTAGGGAGGATTCATCTAGTTCAAAGGCGAAACAAACCAAAAAAAAGTTAGTATGATAATAAAAACACCATATAAAAAAAAAGTTAAATGTAAATGAGAATAAAATATGAGCTTCCAGGCCCTTAATCCACTCCTTGTTTGCTGCTGCGCATTTTTCAGTGGACTTTTGAGAGTCCAAAATTATCATTTTCAGCCTTTTCAAGGCTACTGCTGCTGCTGGTTTACTTGGGTTTTTACCCAATAATACTAGTTTCCTTTTATCGACTCAGATGAGGTTAATTCAAAGAGAGGAAAGTGCAGGAAAGGGGGAGTTCCAATCGGACTCAAATCAGGAGAAGTCATGCAAAGAAAACGAAAAATAAAAAAATAAAAATTAGCAAGTGATTTAATAAGACTTATGAACTACAAACCTTAAAGACATATTCAACATCAATAAAGATAACGCATAGGAGTTAGATGATGTCCAACAAATTACTCTCTAATCGAATGCACCTCTTATTTTCCTAATGATCGAACAAGTGCCCATTAAGTTAACCACATAACTAGTTTTCTATTAATCACAATTCAACTTATCAATATAAAAGATTAGAAATGATGATTCGCTTTAAACAAAAGCTAAAAAATGGTTGGATTTGAAAAAGAATGACTAACAGTAAAAGTTGCATCTGACTTAACAGATAAATAATGAAAACAAATCAATACCAACAACTTCAATAAAAGAGTTGGGGAAGAAATCGATATTTGTCATTTTCTCAAAGATATGAATCCCAACAGTAAGTTTATCATGCAACTAAAAAATGAAGGATATTACTCAAATTGAGTCAAAACCTAAGAATTGAAGAAGCAAATATTTAGAGCAAAACTAAAGGCAACATTAAAAGAGCCAACACAAATTAACATTTCCATGAAATCAGATTGTAAGGCCAAGATTAGTGGCATAACCGAGCTTGGCTCTCTCCAAGAAGATTTGAAACTAAAATAGCTCGAATTCTTGTAACTTGATAGGTAATCCAAAGAAAATCCCAAACAAGGATATTATAGCCTTCAGATTTGAACTAAAATCAGAAATTTTAAACCAAAACAAATGACAACTTGGCTATTGGGGGTACAAGTAGTTTGCTGTCACAGGAAAAACAAAAGGAATATAGTAAATACAAAGAGATGCATTCATTTTTTGTAGGAGTAAAAGAAGTATCCAAATCAAGTACCAATCTGTTCTGATAATACAAAGACTAAACCCTTGGAGAGCTTTAACATCCATGGCTAAAAAATGAACAATTAGAATGATATGATTTCACAAGGTAAAACTACTAGACATAACAAGGAAGTAACTCTCTTTTTTAAAGCATACTACGGCTAATGTAAAACAAACGAAACCTTAAGACCACAGATTCATGAAACAGAGCACATCAAGTTGATTTTGAAGAGAAGAGATAAAATAATTGCAAAGATATATGGCAAACGCTTCAGACTCAAACGGATATATGGTCCTAAAGGAAGCAACACTTCAAGAAGATTTAAACTAAAAAAATGTAACACATCTTTCATGAATCTGGAACCATATATAGAAGACAAATGAGACAGAGAACAATCATGCATAAAAATGATACAGTGAAGTCGTCTACTACATATTAGAAAACACACTAACGAATGAAAACTCAAACCATTGCCAAAACGAGTTAACTACTATTTCAATCCCATTTCATATATCACGAGATGAACTAACACTTAACAAAACGAAAGCACAATCACTTCATCAAATGGATTGTGAACCAAAGTAAAGTAAGGGAAGACAGAAAATTACCCTTTCCGGAGCAGCGAACTTGACGAAATGATGAGCAGAGGGCAACAAGCTTTCACCACTAAAACCCGAACTAGACAACGGACGAGAAGCCTAGGCAACAACTAAAACTCGAACCAACTTAAAGAACTACGATGATCGAGCTAGGACGGAAACTACCTCTTCCTTATCTCTTTCAAGTGTATTTCTTATATATCTTATAGCTAATTTGTTGTATCATTCTCTTTCTCTGTTTTGAATTCCCAACCCTTCTCTCAGTGAAGGATCTCCAACCCGAAATGAATAAGAAAGAAGGTATTTATAGGAGGAAATAGGGCAGACTTGGGGGGAAACATATGAGGGTAGAATCGGGCTAAAAAAGAAGGGCCAAAATTTGAATTTCCAAATGGAAATCTATCCAGAGCAAAAGCATATTCCCAATGATTCTTGCAATTTCAACAGATTGAAGGCGAGATTGAGGGGTAAGATCAACCCATCGTCCTTCGAATGCTACGTGGCTCGATCTTGAGGCCACAAGGACGAATTTGCAGCTGGAATCGGCGCTGGAACTGTACTAAGCGTACTGTATGTTGAGGGAAAGGAAGAAGATGACAAGAAAATAATACTGGGTACCGTTGTACGCGTCTGTCGATTGACACCATGTAATCCCCGTCTGTTGGCTGTGAAGACGTTAATAATTCGCTGTCTTGCTACCGTGTACTATTCCGTTTGGCTTGACGCCTTATAGTTGGTGCTTTCGATGGGATTAGAAGGGAAAAGGGAATTGGGTTGGGTCAAAAGGAGTGGGCTGGGATTTCTGGGTTTTGAAATTGATAACATGGGGGTGAGGATTTAGAAAGGATGAGAATTGTTGTTGGAAAAGGGGAATAAATGAATAGGGTCATTTTGAGTATTGGGCTGCAAAATAAAGGCCCTAAAGAGTGACAAAGCTATATTAAATAACTTGAAAAATATTTTGAATTTTACAAAGTTGGTTATTTCAAATAGTTTGGAATTTAAGAAAATCGAAAGTCAATTCCTATCATGGAGGGTCAAAATTAGGTGTCAACAAACGCAACATAACATCTAGGTGACATTCCTTTCTAAGAGTAGCCCTTGACCATCTCACGTGCAGTCAGTACATTATCTAAGATGTTTCTACCCTGGATGAAAGCTGACAAAGGACTAACAATATAGTCCACTACAGTTTTTAGTTTTGGCAGTCAGTATCTTGGCTATAAGCTTATACAGGGTAGTGCAACAATCTATTGGCATTTACTACATATGATGGTGCAGTTACCTTAGGCACAAGTGTGACTGTGGTTGTGTTTACACCTTTTAACTATTTACAATTTTCAAAGAACCGTTTCCTCCCCCTTATTATTTCTCAGAAGTTTTTTAAAATTCTGCAATATAACCATCAATACATGGGCTCTTGTTCACTGGCTTGTCCTTCAAGGCTTTCACCACATCCTGAGTAATCACGGGTTGCAGTAGCTGTTGTTGTTGTTCAACTGTAAGGCAGGGGTCATCTCGAGCTGTGCATGAGTATACAAGGCATGGTTGATGCATCTGGCCCCAACAAAGTTTGAAAGAACGGGAGAAACTCCTGTTGTATCTGTTCTGGATCAGTCAGCTTAGTCCCCTGTTCTGTGTAAATAGAGGATATTTTGTTCGTTGCTCGCCTAGCTTTCAGGTGGACAGATAAGTACTTGTAGTTCCTTCTGCATTAATACCCTTTCGTAAAGACTTCCCCATTTCTCAAAGGTCTGCACTGGTTTCCTCTCTCCATTGATCAAGTCTTGGTTGAGGAGGTGTGTTGCCATTTCAACCTGCCCCTCCTCCATTTCCTCCTGCACTTTCTGGAGTCTTTGCCTCAATTGGATCAATTTCTTTTCTTTTGTCGAAAATTTCCTGGCCTACCTGAAGATGGAGTAAGCTGAAGATCCGTCATATCTGGGCTAATCACTTCTTCCCAGTACTTCAGCCTACCTCTGCCTTTCCTCGTCCCCACTATATCCAACCTCACACATCTCCTCACTGAGGCACTTGTACATCTCCTCTTCACATGCCCAAACCATCTCAGCTTCCCTTCCCTCATCCCACACACCCATCTCAACATTCTCATTTTCGCCACTTGCATTTTCTGTACATGAGAGTTCGACTAGCCAACACTTTCCCCTTACAATAACGCCAGTCTGACCACTACTCTATAGAACTTTTACCTTTAAGTTTCAGTGGTACATTCTTATCGCACAAGACAACGGACGCAAGCCTCCTCTGCATCTATATTCCACCGATACGATGTGTGACATCATCGTTGATATCCCCATTTCCTTGGATCAGAGACCCAAGATACTTAAATCTCTGTTTGGGACAACTTGCATATCAAGTCTCACTTTTATGGCTGCCTCATGCGTCACATCACCCTTTGAACTATTGTGATCTTAAACATGCCATATCATTCCTAAAAATGGAGTGTCATTAAGGGTATAACTGTAATATTGAAATTTAGAACTTATGAAATATAGAAGCAATTTTCTTTTTCATATAGACTAAAAAAAAGAGTAAAACATGTATAAATGAAACAGAGAAATTAACTGATGTGGAGTAATTCAACCTTGTGGAATCTTGGTTTCTGGGTGAAGGCTGGTATAACTACAGATAACAATATCTGGTAATGCGATAATAGAATTCGTTGAATAGCTGCAAGCAGATCAGTTTATGTTCTTCTAAGGCTCTTTGCTTGCAAACCAGTCTATGTTCTTCATTATCACATTAAGGATTACCTTTAGCTTGTTTGGGGGAACAGATTTCTTATTGATGATGAGATGGTTTGTGGGTCTGTTTGGTCTTTAGACCGATACACTCGTAAGGTTTGATCATATGAATCCTTTCCTTTTTAATGAATATGCTCAATTGTTTTGCTTCCTAATGAGTTTTCACTTATGTTACATGCCATGGAATCATCCAGATGCTATAGTATTCTCTTGCATCTTTTCTCGAGGCCATTTGATTTGTTATTCTGTTTATCTTTAGTTATATCCTCTTAACCACAACTTTTCTTCCTCTTTTAGCTTGCTGCTTTGAACCAATTGAGAAATATATTTGGTTTGGGGAAACGAGAAGCAGATACAATCACATTGGATGTAACCTCAAAGGTATACCGTAAACGACTAGCTCAAGCTGTTACCAGTGGTGAATTAGAAGCGTTCGAAAGCAAAGCAGCCTATCTTCAAAACCTTTGTGAAGAATTAATTTTTGATCCACAA</genome_strand>
        <mrna_strand>GTACTCGTGTTTTCAAGGTTACTGATGCCCAG....................................................................................................................................................................................................................GTTGATGTTGCTGTCAGGGACAATGCACAACGGTTGTATGCCTCCAAGCTTAAGTCTGTTGGGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGATGTGAACCAGCTGATCAGTTTGAGAGAAGCACAACTTGCATATCGATTGTCCGATGAG.......................................................................................................................................................................................CTTGCACATGAGATGCTCAAGGAGCATGCAAGAAAGCTTGTTGAGGAAATCATATCAACTGCTGTTGGCATATTGAAGTCAAGGACAAGAGCAAC......................................................................................................................................................................................CAGGGAACCCACACGTGTCATTGAGGAACTTGATAAGGTATTGTCATATAATAATTTGCTAATCTCACTGAAGAACCATGCTGATGCTAGTCGCTTTGCTCCTGGCATTGGGCCAGTTTCCTTAGTAG....................................................................................................................................................................................GAGGGGAGTATGATGGTGATAGGAAGATGGATGACCTAAAACTTCTTTACAGAGCATATGTTACAGATTCTTTGTCAAGTGGTCGGATGGAAGAAGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTGCTTTGAACCAATTGAGAAATATATTTGGTTTGGGGAAACGAGAAGCAGATACAATCACATTGGATGTAACCTCAAAGGTATACCGTAAACGACTAGCTCAAGCTGTTACCAGTGGTGAATTAGAAGCGTTCGAAAGCAAAGCAGCCTATCTTCAAAACCTTTGTGAAGAATTAATTTTTGATCCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571665" ref_strand="+" ref_description="SGN-U571665 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|147789732|emb|CAN60839.1| (e_value=3e-102) hypothetical; (*ATH) AT1G06950.1 (e_value=3e-95)  Symbol: TIC110 | Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis. | chr1:2130154-2135664 REVERSE | Aliases: F10K1.33, ATTIC110, TI... ; ">
      <seq>cccacaaagaaggatgactctgaatatgtttttctaggtcaacttggtagcatccttgggttgaccgatagtgagattgttggagtgcaccaaggtttagctgagcaggcttttaggcaacaagcagaggtgatcttagctgatggacagataacgaaggccaaaatggtacagctgaatgagttgcagaagaatgttggcttgccgccacattatgctcagaatataataaagagcatcacaacaacaaaactggcggcagccctcgagactgctggtggtcaaggaaggcttagcattaaggagattagagaattgaaagagtcttcagtagacataaataccatgatatccgaaagtttacgtgagaatcttttcaaaaagactctggctgatatcttctcatctggtactggagagtttgacgaagaagaggtatatgaaaatgtcccaaaagatcttaatataaatgttgagaaggccaaaaaagttgttcatgaactagctcttagcagattatcaaactcacttattcaggccgtgtcacttttaaggcagagaaatcataaagcattggtttattctctcaatgatctgttagcttgtgacaaggccgttcctgcaaccccattatcttgggaggtaccagaagaactgtctgatctgttcatcgtatatttgaagagtgatcccccaccagaaaagttgtccaggttacagtatctgttaggtataagtgattcaacagcagagacattgagaactgtgaaggatagagaactaccaaatggggcaggggaagaggagtttgtattttaattctgttatagctgctactgataaatgtttgtcagttgtagacggggagaggagagatggttgcaggtattttttgttaattaatgcaagtgaggtgtatctttttgcagtgcttttaagatgtgagctagaaacattggggtctcatagtgtttttagttactacccgtgcggggttaagtaccatattaagcatacggagataccaatcagtaatattcattttccccttttgatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0005K22-CfAGc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0005K22.1" temp_strand="+" temp_description="C00SLm0005K22.1  CU928761.4 htgs_phase:3 submitted_to_sgn_as:C00SLm0005K22 sequenced_by:sanger upload_account_name:uk">
        <position start="134221" stop="135975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134520" g_stop="135095" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135096" i_stop="135192" i_length="97">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135193" g_stop="135675" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="1060" r_length="484" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0005K22.1" gen_strand="+" ref_id="SGN-U571665" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1059</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0005K22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134520" e_stop="135095"/>
          <exon e_start="135193" e_stop="135675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACAAAGAAGGATGACTCTGAATATGTTTTTCTAAGTCAACTTGGTAGCATCCTTGGGTTGACCGATAGTGAGATTGTTGGAGTGCACCAAGGTTTAGCTGAGCAGGCTTTTAGGCAACAAGCAGAGGTGATCTTAGCTGATGGACAGATAACGAAGGCCAAAATGGTACAGCTGAATGAGTTGCAGAAGAATGTTGGCTTGCCGCCACATTATGCTCAGAATATAATAAAGAGCATCACAACAACAAAACTGGCGGCAGCCCTCGAGACTGCTGTTGGTCAGGGAAGGCTTAGCATTAAGGAGATTAGAGAATTGAAAGAGTCTTCAGTAGACATAAATACCATGATATCCGAAAGTTTACGTGAGAATCTTTTCAAAAAGACTCTGGCTGATATCTTCTCATCTGGTACTGGAGAGTTTGACGAAGAAGAGGTATATGAAAATGTCCCAAAAGATCTTAATATAAATGTTGAGAAGGCCAAAAAAGTTGTTCATGAACTAGCTCGTAGCCGATTATCAAACTCACTTATTCAGGCCGTGTCACTTTTAAGGCAGAGAAATCATAAAGCATTGGTATGAATTTTATCTTAAGACGGCTGTTGGTTTTGCTTGAATCATGCCATATATGTTTGTTGAAGTTTAAATGCTACTACTTCTGTCTGTTTTGTAGGTTTATTCTCTCAATGATCTGTTAGCTTGTGACAAGGCCGTTCCTGCAATCCCATTATCTTGGGAGGTACCAGAAGAACTGTCTGATCTGTTCATCGTATATTTGAAGAGTGATCCCCCACCAGAAAAGTTGTCCAGGTTACAGTATCTGTTAGGTATAAGTGATTCAACAGCGGAGACATTGAGAACTGTGAAGGATAGAGAACTACCAAATGGGGCAGGGGAAGAGGAGTTTGTATTTTAATTCTGTTATAGCTGCTACTGATAAATGTTTGTCAGTTGTAGATGGGGAGAGGAGAGACGGTTGCAGGTATTTTTTGTTAATTAATGCAAGTGAGGTGTATCTTTTTGCAGTGCTTTTAAGATGTGAGCTAGAAACATTGGGGTCTCATAGTGTTTTTAGTTACTACCCGTGCGGGGTTAAGTACCATATTAAGCATACGGAGATACCAATCAGTAATATTCATTTT-CCCTTTTGATCTTG</genome_strand>
        <mrna_strand>CCCACAAAGAAGGATGACTCTGAATATGTTTTTCTAGGTCAACTTGGTAGCATCCTTGGGTTGACCGATAGTGAGATTGTTGGAGTGCACCAAGGTTTAGCTGAGCAGGCTTTTAGGCAACAAGCAGAGGTGATCTTAGCTGATGGACAGATAACGAAGGCCAAAATGGTACAGCTGAATGAGTTGCAGAAGAATGTTGGCTTGCCGCCACATTATGCTCAGAATATAATAAAGAGCATCACAACAACAAAACTGGCGGCAGCCCTCGAGACTGCTGGTGGTCAAGGAAGGCTTAGCATTAAGGAGATTAGAGAATTGAAAGAGTCTTCAGTAGACATAAATACCATGATATCCGAAAGTTTACGTGAGAATCTTTTCAAAAAGACTCTGGCTGATATCTTCTCATCTGGTACTGGAGAGTTTGACGAAGAAGAGGTATATGAAAATGTCCCAAAAGATCTTAATATAAATGTTGAGAAGGCCAAAAAAGTTGTTCATGAACTAGCTCTTAGCAGATTATCAAACTCACTTATTCAGGCCGTGTCACTTTTAAGGCAGAGAAATCATAAAGCATTG.................................................................................................GTTTATTCTCTCAATGATCTGTTAGCTTGTGACAAGGCCGTTCCTGCAACCCCATTATCTTGGGAGGTACCAGAAGAACTGTCTGATCTGTTCATCGTATATTTGAAGAGTGATCCCCCACCAGAAAAGTTGTCCAGGTTACAGTATCTGTTAGGTATAAGTGATTCAACAGCAGAGACATTGAGAACTGTGAAGGATAGAGAACTACCAAATGGGGCAGGGGAAGAGGAGTTTGTATTTTAATTCTGTTATAGCTGCTACTGATAAATGTTTGTCAGTTGTAGACGGGGAGAGGAGAGATGGTTGCAGGTATTTTTTGTTAATTAATGCAAGTGAGGTGTATCTTTTTGCAGTGCTTTTAAGATGTGAGCTAGAAACATTGGGGTCTCATAGTGTTTTTAGTTACTACCCGTGCGGGGTTAAGTACCATATTAAGCATACGGAGATACCAATCAGTAATATTCATTTTCCCCTTTTGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="797" PGL_stop="553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="797" e_stop="553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="797" e_stop="553" e_length="245"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="797" stop="553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCCGATCCGCAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTCTGAGGAAGATTTGAAATAGAATCAACTTGAATTCAGGACCGCTATTCGAAATCTTAGTGAAACACTGGATTTCTTATCTCATGTCTGCTTTTCGTGAAAAAATACCAATTGAAGTGGAGGGTTTCTTCAAACAACAAGGGGTTGGGTCAACTATTCAATCAAATCATATTGAGCATGTTTCCTATCTCTTCTCGAG</gDNA_template>
            <first_frame> D  P  I  R  K  D  H  D  W  E  L  F  D  R  L  S  L  R  K  I  *  N  R  I  N  L  N  S  G  P  L  F  E  I  L  V  K  H  W  I  S  Y  L  M  S  A  F  R  E  K  I  P  I  E  V  E  G  F  F  K  Q  Q  G  V  G  S  T  I  Q  S  N  H  I  E  H  V  S  Y  L  F  S   </first_frame>
            <second_frame>  I  R  S  A  R  T  M  I  G  N  C  L  I  V  F  L  *  G  R  F  E  I  E  S  T  *  I  Q  D  R  Y  S  K  S  *  *  N  T  G  F  L  I  S  C  L  L  F  V  K  K  Y  Q  L  K  W  R  V  S  S  N  N  K  G  L  G  Q  L  F  N  Q  I  I  L  S  M  F  P  I  S  S  R  </second_frame>
            <third_frame>   S  D  P  Q  G  P  *  L  G  I  V  *  S  S  F  S  E  E  D  L  K  *  N  Q  L  E  F  R  T  A  I  R  N  L  S  E  T  L  D  F  L  S  H  V  C  F  S  *  K  N  T  N  *  S  G  G  F  L  Q  T  T  R  G  W  V  N  Y  S  I  K  S  Y  *  A  C  F  L  S  L  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0005K22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3547" PGL_stop="4382"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3547" e_stop="4382"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="3547" e_stop="4382" e_length="836"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3547" stop="4382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594060" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTCCTAGTAAGGCAAGGCAGAATGGAATTGCTAAGAGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGGATACACTGTGGGCTGCCCAAAACATTTTGGGCGGATGCTGTGCGCACAGCTACATACTTGATTAACCGGGGACCATCAGTTCCTTTAGGGTTCAAGATTCCAGAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCACACTTGAGGACTTTTGGTTGCACTGCTTATGTCCATGTTGATCCAGAAAAGAGAGACAAGCTTGATGCCAAGGCTATGACGTGTTACTTCATAGGATATGGTTCTGATTTGTTTGGTTACAGGTTTTGGGATGACAAGAATAGAAAGATCTTGAGACATTGTGACGTGACATTTGATGAGTCTGTTCTGTACAAGGACAGAGAGCAGAAGGTTCTAGAGATTACAAAGCAAGTGAGAGTTGAGGTTGAGTTGGAGAAAAGTAACCCCATAGATGTCGAAGCAGATACTCAACCAACTCCTACTGTAGAATCTGAAGTGAAGCAAGTTATACCAGAGCAGGTTTTAAGGAGATCATCCAGAACCATCAGGGCACCAGATAGGTATTCACCTTTATTACACTATCTATTACTGACTGATGAGGGGGAACCAGAGTATTTTAATGAGGCCCTACAGGTGGAGGATTCAATCAAGTGGGAGCAAGCCATGGATGATGAGATGAGGTCACTTGAGAAGAACGACACATGGTTGTTGACTGAGTTACCTGCTGGGAAGAGAGCTTTGCTGAACAAGTGGGTGTTCAGAATCAAGACTGAACAAGATGGCAAAAAAAAAATTCAAG</gDNA_template>
            <first_frame> S  S  *  *  G  K  A  E  W  N  C  *  E  D  E  Q  N  I  E  *  A  C  K  E  Y  E  D  T  L  W  A  A  Q  N  I  L  G  G  C  C  A  H  S  Y  I  L  D  *  P  G  T  I  S  S  F  R  V  Q  D  S  R  G  G  V  D  R  K  R  T  Q  V  L  T  L  E  D  F  W  L  H  C  L  C  P  C  *  S  R  K  E  R  Q  A  *  C  Q  G  Y  D  V  L  L  H  R  I  W  F  *  F  V  W  L  Q  V  L  G  *  Q  E  *  K  D  L  E  T  L  *  R  D  I  *  *  V  C  S  V  Q  G  Q  R  A  E  G  S  R  D  Y  K  A  S  E  S  *  G  *  V  G  E  K  *  P  H  R  C  R  S  R  Y  S  T  N  S  Y  C  R  I  *  S  E  A  S  Y  T  R  A  G  F  K  E  I  I  Q  N  H  Q  G  T  R  *  V  F  T  F  I  T  L  S  I  T  D  *  *  G  G  T  R  V  F  *  *  G  P  T  G  G  G  F  N  Q  V  G  A  S  H  G  *  *  D  E  V  T  *  E  E  R  H  M  V  V  D  *  V  T  C  W  E  E  S  F  A  E  Q  V  G  V  Q  N  Q  D  *  T  R  W  Q  K  K  N  S   </first_frame>
            <second_frame>  V  P  S  K  A  R  Q  N  G  I  A  K  R  M  N  R  T  L  N  E  R  A  R  S  M  R  I  H  C  G  L  P  K  T  F  W  A  D  A  V  R  T  A  T  Y  L  I  N  R  G  P  S  V  P  L  G  F  K  I  P  E  E  V  W  T  G  K  E  L  K  Y  S  H  L  R  T  F  G  C  T  A  Y  V  H  V  D  P  E  K  R  D  K  L  D  A  K  A  M  T  C  Y  F  I  G  Y  G  S  D  L  F  G  Y  R  F  W  D  D  K  N  R  K  I  L  R  H  C  D  V  T  F  D  E  S  V  L  Y  K  D  R  E  Q  K  V  L  E  I  T  K  Q  V  R  V  E  V  E  L  E  K  S  N  P  I  D  V  E  A  D  T  Q  P  T  P  T  V  E  S  E  V  K  Q  V  I  P  E  Q  V  L  R  R  S  S  R  T  I  R  A  P  D  R  Y  S  P  L  L  H  Y  L  L  L  T  D  E  G  E  P  E  Y  F  N  E  A  L  Q  V  E  D  S  I  K  W  E  Q  A  M  D  D  E  M  R  S  L  E  K  N  D  T  W  L  L  T  E  L  P  A  G  K  R  A  L  L  N  K  W  V  F  R  I  K  T  E  Q  D  G  K  K  K  I  Q  </second_frame>
            <third_frame>   F  L  V  R  Q  G  R  M  E  L  L  R  G  *  T  E  H  *  M  S  V  Q  G  V  *  G  Y  T  V  G  C  P  K  H  F  G  R  M  L  C  A  Q  L  H  T  *  L  T  G  D  H  Q  F  L  *  G  S  R  F  Q  R  R  C  G  Q  E  K  N  S  S  T  H  T  *  G  L  L  V  A  L  L  M  S  M  L  I  Q  K  R  E  T  S  L  M  P  R  L  *  R  V  T  S  *  D  M  V  L  I  C  L  V  T  G  F  G  M  T  R  I  E  R  S  *  D  I  V  T  *  H  L  M  S  L  F  C  T  R  T  E  S  R  R  F  *  R  L  Q  S  K  *  E  L  R  L  S  W  R  K  V  T  P  *  M  S  K  Q  I  L  N  Q  L  L  L  *  N  L  K  *  S  K  L  Y  Q  S  R  F  *  G  D  H  P  E  P  S  G  H  Q  I  G  I  H  L  Y  Y  T  I  Y  Y  *  L  M  R  G  N  Q  S  I  L  M  R  P  Y  R  W  R  I  Q  S  S  G  S  K  P  W  M  M  R  *  G  H  L  R  R  T  T  H  G  C  *  L  S  Y  L  L  G  R  E  L  C  *  T  S  G  C  S  E  S  R  L  N  K  M  A  K  K  K  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3548" stop="4381"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPSKARQNGIAKRMNRTLNERARSMRIHCGLPKTFWADAVRTATYLINRGPSVPLGFKIPEEVWTGKELKYSHLRTFGCTAYVHVDPEKRDKLDAKAMTCYFIGYGSDLFGYRFWDDKNRKILRHCDVTFDESVLYKDREQKVLEITKQVRVEVELEKSNPIDVEADTQPTPTVESEVKQVIPEQVLRRSSRTIRAPDRYSPLLHYLLLTDEGEPEYFNEALQVEDSIKWEQAMDDEMRSLEKNDTWLLTELPAGKRALLNKWVFRIKTEQDGKKKIQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="15091" PGL_stop="15805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15091" e_stop="15805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="15091" e_stop="15805" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15091" stop="15805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGGGTCTTCGTTCCAAAACACTTCAACTCTTGGAAAATGGGTACTGGGATTATTTCTCTGAACTTCATGACGAACCTGCAGGACGGACCGTCATAGACACGACGAACCGTCACAAGCTTTGTAGCCCCACACTTGTTCAGACTTCCCCATCTTCCTTCAGCAACTGCACTACGCTGCCACCTACGGAACGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTGGCTCAAAATCTCCGCGTTCAGCTTTGGACAGATTTCCTGCAAAACAAAAAGAAACTTATATAAAAATTAGCGTAAAATGGGTTTTGGACACACTAAACATAAGGAAAAAGTATTAATAATACTGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCATTTTTTGTCCTCAAGCGACGCACTATGACTCAATACAAAATCTTTGTACAATAGTATACATGTTTTATCCTTTGCAATCGTTTGGATATCAATTCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTATGTGGGATTGGAACATGACACAGACTCACCATGCACTAACACCTATTCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTGGTATTGCAACTAGTGTCCTCACTTTAAACAAAATCCTCATTTTTTACACAATGATTTCAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> *  G  S  S  F  Q  N  T  S  T  L  G  K  W  V  L  G  L  F  L  *  T  S  *  R  T  C  R  T  D  R  H  R  H  D  E  P  S  Q  A  L  *  P  H  T  C  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  T  S  Q  A  R  R  T  V  I  S  S  V  G  G  L  F  C  I  F  W  L  K  I  S  A  F  S  F  G  Q  I  S  C  K  T  K  R  N  L  Y  K  N  *  R  K  M  G  F  G  H  T  K  H  K  E  K  V  L  I  I  L  *  N  H  G  I  S  T  P  S  T  *  I  H  F  L  S  S  S  D  A  L  *  L  N  T  K  S  L  Y  N  S  I  H  V  L  S  F  A  I  V  W  I  S  I  P  I  N  L  I  K  S  M  H  A  I  T  I  R  L  E  L  C  G  I  G  T  *  H  R  L  T  M  H  *  H  L  F  S  S  I  S  H  R  G  A  N  N  S  G  I  A  T  S  V  L  T  L  N  K  I  L  I  F  Y  T  M  I  S  V  *  V  *  G  L  </first_frame>
            <second_frame>  E  G  L  R  S  K  T  L  Q  L  L  E  N  G  Y  W  D  Y  F  S  E  L  H  D  E  P  A  G  R  T  V  I  D  T  T  N  R  H  K  L  C  S  P  T  L  V  Q  T  S  P  S  S  F  S  N  C  T  T  L  P  P  T  E  R  H  K  H  D  G  P  S  *  A  P  *  V  V  S  S  A  F  F  G  S  K  S  P  R  S  A  L  D  R  F  P  A  K  Q  K  E  T  Y  I  K  I  S  V  K  W  V  L  D  T  L  N  I  R  K  K  Y  *  *  Y  C  E  T  T  V  Y  Q  H  P  Q  L  K  F  I  F  C  P  Q  A  T  H  Y  D  S  I  Q  N  L  C  T  I  V  Y  M  F  Y  P  L  Q  S  F  G  Y  Q  F  R  L  I  S  S  N  L  C  M  L  S  L  L  G  L  N  Y  V  G  L  E  H  D  T  D  S  P  C  T  N  T  Y  S  L  Q  F  L  T  E  V  L  T  I  L  V  L  Q  L  V  S  S  L  *  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </second_frame>
            <third_frame>   R  V  F  V  P  K  H  F  N  S  W  K  M  G  T  G  I  I  S  L  N  F  M  T  N  L  Q  D  G  P  S  *  T  R  R  T  V  T  S  F  V  A  P  H  L  F  R  L  P  H  L  P  S  A  T  A  L  R  C  H  L  R  N  V  T  S  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  L  A  Q  N  L  R  V  Q  L  W  T  D  F  L  Q  N  K  K  K  L  I  *  K  L  A  *  N  G  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  R  Y  I  N  T  L  N  L  N  S  F  F  V  L  K  R  R  T  M  T  Q  Y  K  I  F  V  Q  *  Y  T  C  F  I  L  C  N  R  L  D  I  N  S  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  I  M  W  D  W  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  P  R  C  *  Q  F  W  Y  C  N  *  C  P  H  F  K  Q  N  P  H  F  L  H  N  D  F  S  L  S  I  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15458" stop="15754"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCETTVYQHPQLKFIFCPQATHYDSIQNLCTIVYMFYPLQSFGYQFRLISSNLCMLSLLGLNYVGLEHDTDSPCTNTYSLQFLTEVLTILVLQLVSSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15092" stop="15307"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGLRSKTLQLLENGYWDYFSELHDEPAGRTVIDTTNRHKLCSPTLVQTSPSSFSNCTTLPPTERHKHDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15189" stop="15401"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRTVTSFVAPHLFRLPHLPSATALRCHLRNVTSTTDRHKLRRWSLLHFLAQNLRVQLWTDFLQNKKKLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="92874" PGL_stop="92160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92874" e_stop="92160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="92874" e_stop="92160" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92874" stop="92160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGGGTCTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGATCACCTCTTCTATCTCCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCATAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACAGGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTCTCTCAAAATCTCCGCATTCAGCTTTAGACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTATACAATCTTTGTACAATAGTATTCATGTTTTTATCCTTTGCAATCATTTGGCTACCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATTCGAACATGACACAGACTCAACATGCACTAACACTATTCTCTTCAATTTCTCACCGAGAGGCTAACAATTCCGGTATAGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> R  G  S  R  F  K  I  L  Q  L  L  E  S  G  Y  W  I  T  S  S  I  S  T  T  N  L  Q  D  G  P  S  *  P  *  R  T  V  T  S  F  I  I  P  H  L  V  R  L  P  H  L  P  S  A  A  S  L  R  C  H  L  R  T  V  T  G  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  F  S  Q  N  L  R  I  Q  L  *  T  D  F  L  Q  N  K  E  K  L  I  S  K  L  A  Q  K  G  L  S  D  T  L  N  L  R  K  K  Y  *  L  Y  R  E  T  T  V  Y  Q  H  P  Q  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  L  Y  N  L  C  T  I  V  F  M  F  L  S  F  A  I  I  W  L  P  I  P  I  N  L  I  K  S  M  H  A  I  T  I  R  L  E  F  C  G  I  R  T  *  H  R  L  N  M  H  *  H  Y  S  L  Q  F  L  T  E  R  L  T  I  P  V  *  Q  L  V  S  S  L  *  N  K  I  L  I  F  H  T  M  I  S  V  *  V  *  G  L  </first_frame>
            <second_frame>  E  G  L  V  S  K  Y  F  N  S  W  N  L  G  T  G  S  P  L  L  S  P  R  R  T  C  R  T  D  R  H  S  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  L  Y  A  A  T  Y  G  P  S  Q  A  R  R  T  V  I  S  S  V  G  G  L  F  C  I  F  S  L  K  I  S  A  F  S  F  R  Q  I  S  C  K  T  K  R  N  L  Y  Q  N  *  H  K  K  G  F  R  T  H  *  T  *  G  K  S  I  N  Y  T  V  K  P  R  Y  I  N  T  L  N  L  N  S  L  F  V  L  K  R  R  T  M  T  H  Y  T  I  F  V  Q  *  Y  S  C  F  Y  P  L  Q  S  F  G  Y  Q  S  R  L  I  S  S  N  L  C  M  L  S  L  L  G  L  N  F  V  G  F  E  H  D  T  D  S  T  C  T  N  T  I  L  F  N  F  S  P  R  G  *  Q  F  R  Y  S  N  *  C  P  H  F  R  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </second_frame>
            <third_frame>   R  V  S  F  Q  N  T  S  T  L  G  I  W  V  L  D  H  L  F  Y  L  H  D  E  P  A  G  R  T  V  I  A  M  T  D  R  H  K  L  H  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  F  S  T  L  P  P  T  D  R  H  R  H  D  G  P  S  *  A  P  *  V  V  S  S  A  F  F  L  S  K  S  P  H  S  A  L  D  R  F  P  A  K  Q  R  E  T  Y  I  K  I  S  T  K  R  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  T  P  S  T  *  I  R  C  L  S  S  S  D  A  L  *  L  T  I  Q  S  L  Y  N  S  I  H  V  F  I  L  C  N  H  L  A  T  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  I  L  W  D  S  N  M  T  Q  T  Q  H  A  L  T  L  F  S  S  I  S  H  R  E  A  N  N  S  G  I  A  T  S  V  L  T  L  E  Q  N  P  H  F  S  H  N  D  F  S  L  S  I  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92872" stop="92660"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVSFQNTSTLGIWVLDHLFYLHDEPAGRTVIAMTDRHKLHNPTLGQTSPSSFSSFSTLPPTDRHRHDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92511" stop="92302"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYRETTVYQHPQLKFVVCPQATHYDSLYNLCTIVFMFLSFAIIWLPIPINLIKSMHAITIRLEFCGIRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="104068" PGL_stop="105235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104068" e_stop="104264"/>
            <exon e_start="104421" e_stop="104559"/>
            <exon e_start="104818" e_stop="105235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.288" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104068" e_stop="104264" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.979">
            <gDNA_intron_boundary i_start="104265" i_stop="104420" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104421" e_stop="104559" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.288" acc_prob="0.997">
            <gDNA_intron_boundary i_start="104560" i_stop="104817" i_length="258"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="104818" e_stop="105235" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104068" stop="104264"/>
              <exon start="104421" stop="104559"/>
              <exon start="104818" stop="105235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571378" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACGGTCGAATTTACCCCCAAACGCTTCGCTGTCTGCAGAGTTTCACAGAGAGAGAGAGAGAGATGGGGAAACGGAAGGAGCAGAAGAAAGTTTGTCATCGTGATGATGAGGATAAAGAAGTAGAAGGAAGCAGGTTCTTTGCCTGTTACTTGCTTACATCTATGTGCCCCAGATTCAAAGGCCACACTTACATCGG : ATTTACAGTAAATCCTCGCCGTAGAATTCGACAGCACAATGGAGAGGTAAGGATGGGTGCATTGAGGACTAAGAGGAAGCGTCCCTGGGAGATGATTTTATGCATATATGGCTTCCCTACCAATGTATCAGCCCTCCAG : TTTGAATGGGCCTGGCAGCATCCAGTAGAATCCCGTGCAGTTAGACAGGCTGCAGCATCATTCAAAACTCTTGGAGGAGTTGCTAATAAGATAAAATTGGCATATACAATGCTTACTCTCCCTGAGTGGCAAAGGTATGTAATTTGTTTTGCCTGACCAGTCTGATTGGAATTTTTTCTCATTAAGTTATGTCTTCTATGTTCAGCCTGAACCTCACGGTAAATTTCTTCTCCACAAAATATAAGATGCATTCAGCTGGTTGTCCCAGTCTTCCAGAGCACATGAGAGTCCATATTTGTGCACTGGATGAACTTCCCTGTTATACAGGAATTGACAGGGATGAGTGGGAAAATATTTGTGCACTGGATGAACTTCCCAGTTATACAGGAATTGACAGGGATGAGTGGGAAAATAGGGA</gDNA_template>
            <first_frame> N  G  R  I  Y  P  Q  T  L  R  C  L  Q  S  F  T  E  R  E  R  E  M  G  K  R  K  E  Q  K  K  V  C  H  R  D  D  E  D  K  E  V  E  G  S  R  F  F  A  C  Y  L  L  T  S  M  C  P  R  F  K  G  H  T  Y  I  G :   F  T  V  N  P  R  R  R  I  R  Q  H  N  G  E  V  R  M  G  A  L  R  T  K  R  K  R  P  W  E  M  I  L  C  I  Y  G  F  P  T  N  V  S  A  L  Q  :  F  E  W  A  W  Q  H  P  V  E  S  R  A  V  R  Q  A  A  A  S  F  K  T  L  G  G  V  A  N  K  I  K  L  A  Y  T  M  L  T  L  P  E  W  Q  R  Y  V  I  C  F  A  *  P  V  *  L  E  F  F  L  I  K  L  C  L  L  C  S  A  *  T  S  R  *  I  S  S  P  Q  N  I  R  C  I  Q  L  V  V  P  V  F  Q  S  T  *  E  S  I  F  V  H  W  M  N  F  P  V  I  Q  E  L  T  G  M  S  G  K  I  F  V  H  W  M  N  F  P  V  I  Q  E  L  T  G  M  S  G  K  I  G  </first_frame>
            <second_frame>  T  V  E  F  T  P  K  R  F  A  V  C  R  V  S  Q  R  E  R  E  R  W  G  N  G  R  S  R  R  K  F  V  I  V  M  M  R  I  K  K  *  K  E  A  G  S  L  P  V  T  C  L  H  L  C  A  P  D  S  K  A  T  L  T  S   : D  L  Q  *  I  L  A  V  E  F  D  S  T  M  E  R  *  G  W  V  H  *  G  L  R  G  S  V  P  G  R  *  F  Y  A  Y  M  A  S  L  P  M  Y  Q  P  S  S :   L  N  G  P  G  S  I  Q  *  N  P  V  Q  L  D  R  L  Q  H  H  S  K  L  L  E  E  L  L  I  R  *  N  W  H  I  Q  C  L  L  S  L  S  G  K  G  M  *  F  V  L  P  D  Q  S  D  W  N  F  F  S  L  S  Y  V  F  Y  V  Q  P  E  P  H  G  K  F  L  L  H  K  I  *  D  A  F  S  W  L  S  Q  S  S  R  A  H  E  S  P  Y  L  C  T  G  *  T  S  L  L  Y  R  N  *  Q  G  *  V  G  K  Y  L  C  T  G  *  T  S  Q  L  Y  R  N  *  Q  G  *  V  G  K  *  G </second_frame>
            <third_frame>   R  S  N  L  P  P  N  A  S  L  S  A  E  F  H  R  E  R  E  R  D  G  E  T  E  G  A  E  E  S  L  S  S  *  *  *  G  *  R  S  R  R  K  Q  V  L  C  L  L  L  A  Y  I  Y  V  P  Q  I  Q  R  P  H  L  H  R  :  I  Y  S  K  S  S  P  *  N  S  T  A  Q  W  R  G  K  D  G  C  I  E  D  *  E  E  A  S  L  G  D  D  F  M  H  I  W  L  P  Y  Q  C  I  S  P  P   : V  *  M  G  L  A  A  S  S  R  I  P  C  S  *  T  G  C  S  I  I  Q  N  S  W  R  S  C  *  *  D  K  I  G  I  Y  N  A  Y  S  P  *  V  A  K  V  C  N  L  F  C  L  T  S  L  I  G  I  F  S  H  *  V  M  S  S  M  F  S  L  N  L  T  V  N  F  F  S  T  K  Y  K  M  H  S  A  G  C  P  S  L  P  E  H  M  R  V  H  I  C  A  L  D  E  L  P  C  Y  T  G  I  D  R  D  E  W  E  N  I  C  A  L  D  E  L  P  S  Y  T  G  I  D  R  D  E  W  E  N  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104068" stop="104264"/>
                    <exon start="104421" stop="104559"/>
                    <exon start="104818" stop="104973"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGRIYPQTLRCLQSFTEREREMGKRKEQKKVCHRDDEDKEVEGSRFFACYLLTSMCPRFKGHTYIGFTVNPRRRIRQHNGEVRMGALRTKRKRPWEMILCIYGFPTNVSALQFEWAWQHPVESRAVRQAAASFKTLGGVANKIKLAYTMLTLPEWQRYVICFA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105003" stop="105233"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMSSMFSLNLTVNFFSTKYKMHSAGCPSLPEHMRVHICALDELPCYTGIDRDEWENICALDELPSYTGIDRDEWENR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="118588" PGL_stop="118817"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118588" e_stop="118817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="118588" e_stop="118817" e_length="230"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118588" stop="118817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACCTTTATTATTCAACTTGTACCCCCTCAGACCCCTATCCTCTTCTTCTTCTTCCTAGTTCCAAACTCCGGACGACTTGGTTAAACCCTACTTGAACATCAACTAGTTATTAGAAGAGGTAGTAGATATGAACCCATCATCACTTCTCCTCCCTATCAATCAACCTCCTCCTGTCAACACTTTCCGCTCTCAATTTCTCAATCCTACACCTCTCCGTCTTACCCCTAA</gDNA_template>
            <first_frame> K  P  L  L  F  N  L  Y  P  L  R  P  L  S  S  S  S  S  S  *  F  Q  T  P  D  D  L  V  K  P  Y  L  N  I  N  *  L  L  E  E  V  V  D  M  N  P  S  S  L  L  L  P  I  N  Q  P  P  P  V  N  T  F  R  S  Q  F  L  N  P  T  P  L  R  L  T  P   </first_frame>
            <second_frame>  N  L  Y  Y  S  T  C  T  P  S  D  P  Y  P  L  L  L  L  P  S  S  K  L  R  T  T  W  L  N  P  T  *  T  S  T  S  Y  *  K  R  *  *  I  *  T  H  H  H  F  S  S  L  S  I  N  L  L  L  S  T  L  S  A  L  N  F  S  I  L  H  L  S  V  L  P  L  </second_frame>
            <third_frame>   T  F  I  I  Q  L  V  P  P  Q  T  P  I  L  F  F  F  F  L  V  P  N  S  G  R  L  G  *  T  L  L  E  H  Q  L  V  I  R  R  G  S  R  Y  E  P  I  I  T  S  P  P  Y  Q  S  T  S  S  C  Q  H  F  P  L  S  I  S  Q  S  Y  T  S  P  S  Y  P  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0005K22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="120652" PGL_stop="131500"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120652" e_stop="120683"/>
            <exon e_start="120896" e_stop="120962"/>
            <exon e_start="121624" e_stop="121688"/>
            <exon e_start="121872" e_stop="121966"/>
            <exon e_start="122149" e_stop="122276"/>
            <exon e_start="122457" e_stop="122557"/>
            <exon e_start="131306" e_stop="131500"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.989" e_score="0.906"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="1.000" e_score="0.985"/>
          <exon-intron don_prob="0.977" acc_prob="0.996" e_score="0.989"/>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="0.984"/>
          <exon-intron don_prob="0.999" acc_prob="0.908" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="120652" e_stop="120683" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.989">
            <gDNA_intron_boundary i_start="120684" i_stop="120895" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120896" e_stop="120962" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="120963" i_stop="121623" i_length="661"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="121624" e_stop="121688" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="1.000">
            <gDNA_intron_boundary i_start="121689" i_stop="121871" i_length="183"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="121872" e_stop="121966" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.996">
            <gDNA_intron_boundary i_start="121967" i_stop="122148" i_length="182"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="122149" e_stop="122276" e_length="128"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.976">
            <gDNA_intron_boundary i_start="122277" i_stop="122456" i_length="180"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="122457" e_stop="122557" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.908">
            <gDNA_intron_boundary i_start="122558" i_stop="131305" i_length="8748"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="131306" e_stop="131500" e_length="195"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120652" stop="120683"/>
              <exon start="120896" stop="120962"/>
              <exon start="121624" stop="121688"/>
              <exon start="121872" stop="121966"/>
              <exon start="122149" stop="122276"/>
              <exon start="122457" stop="122557"/>
              <exon start="131306" stop="131500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564808" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAACGTGTTTTCAAGGTTACTGATGCCCAG : GTTGATGTTGCTGTCAGGGACAATGCACAACGGTTGTATGCCTCCAAGCTTAAGTCTGTTGGGCGAG : ATATTGATGTGAACCAGCTGATCAGTTTGAGAGAAGCACAGCTTGCATATCGATTGTCCGATGAG : CTTGCACATGAGATGCTTAAGGAGCATGCAAGAAAGCTTGTTGAGGAAATCATATCAACTGCTGTTGGCATATTGAAGTCAAGGACAAGAGCAAC : CAGGGAACCCACGCGTGTCATTGAGGAACTTGATAAGGTATTGTCATATAATAATTTGCTAATCTCATTGAAGAACCATGCTGATGCTAGTCGCTTTGCTCCTGGCATTGGGCCAGTTTCCTTAGTAG : GAGGGGAGTATGATGGTGATAGGAAGATGGATGACCTAAAACTTCTTTACAGAGCATATGTTACAGATTCTTTGTCAAGTGGTCGGATGGAAGAAGACAAG : CTTGCTGCTTTGAACCAATTGAGAAATATATTTGGTTTGGGGAAACGAGAAGCAGATACAATCACATTGGATGTAACCTCAAAGGTATACCGTAAACGACTAGCTCAAGCTGTTACCAGTGGTGAATTAGAAGCGTTCGAAAGCAAAGCAGCCTATCTTCAAAACCTTTGTGAAGAATTAATTTTTGATCCACAA</gDNA_template>
            <first_frame> G  N  V  F  S  R  L  L  M  P  R :   L  M  L  L  S  G  T  M  H  N  G  C  M  P  P  S  L  S  L  L  G  E  :  I  L  M  *  T  S  *  S  V  *  E  K  H  S  L  H  I  D  C  P  M  S :   L  H  M  R  C  L  R  S  M  Q  E  S  L  L  R  K  S  Y  Q  L  L  L  A  Y  *  S  Q  G  Q  E  Q   : P  G  N  P  R  V  S  L  R  N  L  I  R  Y  C  H  I  I  I  C  *  S  H  *  R  T  M  L  M  L  V  A  L  L  L  A  L  G  Q  F  P  *  *  :  E  G  S  M  M  V  I  G  R  W  M  T  *  N  F  F  T  E  H  M  L  Q  I  L  C  Q  V  V  G  W  K  K  T  S :   L  L  L  *  T  N  *  E  I  Y  L  V  W  G  N  E  K  Q  I  Q  S  H  W  M  *  P  Q  R  Y  T  V  N  D  *  L  K  L  L  P  V  V  N  *  K  R  S  K  A  K  Q  P  I  F  K  T  F  V  K  N  *  F  L  I  H   </first_frame>
            <second_frame>  E  T  C  F  Q  G  Y  *  C  P   : G  *  C  C  C  Q  G  Q  C  T  T  V  V  C  L  Q  A  *  V  C  W  A  R :   Y  *  C  E  P  A  D  Q  F  E  R  S  T  A  C  I  S  I  V  R  *   : A  C  T  *  D  A  *  G  A  C  K  K  A  C  *  G  N  H  I  N  C  C  W  H  I  E  V  K  D  K  S  N  :  Q  G  T  H  A  C  H  *  G  T  *  *  G  I  V  I  *  *  F  A  N  L  I  E  E  P  C  *  C  *  S  L  C  S  W  H  W  A  S  F  L  S  R :   R  G  V  *  W  *  *  E  D  G  *  P  K  T  S  L  Q  S  I  C  Y  R  F  F  V  K  W  S  D  G  R  R  Q   : A  C  C  F  E  P  I  E  K  Y  I  W  F  G  E  T  R  S  R  Y  N  H  I  G  C  N  L  K  G  I  P  *  T  T  S  S  S  C  Y  Q  W  *  I  R  S  V  R  K  Q  S  S  L  S  S  K  P  L  *  R  I  N  F  *  S  T  </second_frame>
            <third_frame>   K  R  V  F  K  V  T  D  A  Q  :  V  D  V  A  V  R  D  N  A  Q  R  L  Y  A  S  K  L  K  S  V  G  R   : D  I  D  V  N  Q  L  I  S  L  R  E  A  Q  L  A  Y  R  L  S  D  E  :  L  A  H  E  M  L  K  E  H  A  R  K  L  V  E  E  I  I  S  T  A  V  G  I  L  K  S  R  T  R  A  T :   R  E  P  T  R  V  I  E  E  L  D  K  V  L  S  Y  N  N  L  L  I  S  L  K  N  H  A  D  A  S  R  F  A  P  G  I  G  P  V  S  L  V   : G  G  E  Y  D  G  D  R  K  M  D  D  L  K  L  L  Y  R  A  Y  V  T  D  S  L  S  S  G  R  M  E  E  D  K  :  L  A  A  L  N  Q  L  R  N  I  F  G  L  G  K  R  E  A  D  T  I  T  L  D  V  T  S  K  V  Y  R  K  R  L  A  Q  A  V  T  S  G  E  L  E  A  F  E  S  K  A  A  Y  L  Q  N  L  C  E  E  L  I  F  D  P  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120654" stop="120683"/>
                    <exon start="120896" stop="120962"/>
                    <exon start="121624" stop="121688"/>
                    <exon start="121872" stop="121966"/>
                    <exon start="122149" stop="122276"/>
                    <exon start="122457" stop="122557"/>
                    <exon start="131306" stop="131500"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRVFKVTDAQVDVAVRDNAQRLYASKLKSVGRDIDVNQLISLREAQLAYRLSDELAHEMLKEHARKLVEEIISTAVGILKSRTRATREPTRVIEELDKVLSYNNLLISLKNHADASRFAPGIGPVSLVGGEYDGDRKMDDLKLLYRAYVTDSLSSGRMEEDKLAALNQLRNIFGLGKREADTITLDVTSKVYRKRLAQAVTSGELEAFESKAAYLQNLCEELIFDPQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="134520" PGL_stop="135675"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134520" e_stop="135095"/>
            <exon e_start="135193" e_stop="135675"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="0.990"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="134520" e_stop="135095" e_length="576"/>
          </exon>
          <intron i_serial="1" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="135096" i_stop="135192" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="135193" e_stop="135675" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134520" stop="135095"/>
              <exon start="135193" stop="135675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571665" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCACAAAGAAGGATGACTCTGAATATGTTTTTCTAAGTCAACTTGGTAGCATCCTTGGGTTGACCGATAGTGAGATTGTTGGAGTGCACCAAGGTTTAGCTGAGCAGGCTTTTAGGCAACAAGCAGAGGTGATCTTAGCTGATGGACAGATAACGAAGGCCAAAATGGTACAGCTGAATGAGTTGCAGAAGAATGTTGGCTTGCCGCCACATTATGCTCAGAATATAATAAAGAGCATCACAACAACAAAACTGGCGGCAGCCCTCGAGACTGCTGTTGGTCAGGGAAGGCTTAGCATTAAGGAGATTAGAGAATTGAAAGAGTCTTCAGTAGACATAAATACCATGATATCCGAAAGTTTACGTGAGAATCTTTTCAAAAAGACTCTGGCTGATATCTTCTCATCTGGTACTGGAGAGTTTGACGAAGAAGAGGTATATGAAAATGTCCCAAAAGATCTTAATATAAATGTTGAGAAGGCCAAAAAAGTTGTTCATGAACTAGCTCGTAGCCGATTATCAAACTCACTTATTCAGGCCGTGTCACTTTTAAGGCAGAGAAATCATAAAGCATTG : GTTTATTCTCTCAATGATCTGTTAGCTTGTGACAAGGCCGTTCCTGCAATCCCATTATCTTGGGAGGTACCAGAAGAACTGTCTGATCTGTTCATCGTATATTTGAAGAGTGATCCCCCACCAGAAAAGTTGTCCAGGTTACAGTATCTGTTAGGTATAAGTGATTCAACAGCGGAGACATTGAGAACTGTGAAGGATAGAGAACTACCAAATGGGGCAGGGGAAGAGGAGTTTGTATTTTAATTCTGTTATAGCTGCTACTGATAAATGTTTGTCAGTTGTAGATGGGGAGAGGAGAGACGGTTGCAGGTATTTTTTGTTAATTAATGCAAGTGAGGTGTATCTTTTTGCAGTGCTTTTAAGATGTGAGCTAGAAACATTGGGGTCTCATAGTGTTTTTAGTTACTACCCGTGCGGGGTTAAGTACCATATTAAGCATACGGAGATACCAATCAGTAATATTCATTTTCCCTTTTGATCTTG</gDNA_template>
            <first_frame> T  T  K  K  D  D  S  E  Y  V  F  L  S  Q  L  G  S  I  L  G  L  T  D  S  E  I  V  G  V  H  Q  G  L  A  E  Q  A  F  R  Q  Q  A  E  V  I  L  A  D  G  Q  I  T  K  A  K  M  V  Q  L  N  E  L  Q  K  N  V  G  L  P  P  H  Y  A  Q  N  I  I  K  S  I  T  T  T  K  L  A  A  A  L  E  T  A  V  G  Q  G  R  L  S  I  K  E  I  R  E  L  K  E  S  S  V  D  I  N  T  M  I  S  E  S  L  R  E  N  L  F  K  K  T  L  A  D  I  F  S  S  G  T  G  E  F  D  E  E  E  V  Y  E  N  V  P  K  D  L  N  I  N  V  E  K  A  K  K  V  V  H  E  L  A  R  S  R  L  S  N  S  L  I  Q  A  V  S  L  L  R  Q  R  N  H  K  A  L  :  V  Y  S  L  N  D  L  L  A  C  D  K  A  V  P  A  I  P  L  S  W  E  V  P  E  E  L  S  D  L  F  I  V  Y  L  K  S  D  P  P  P  E  K  L  S  R  L  Q  Y  L  L  G  I  S  D  S  T  A  E  T  L  R  T  V  K  D  R  E  L  P  N  G  A  G  E  E  E  F  V  F  *  F  C  Y  S  C  Y  *  *  M  F  V  S  C  R  W  G  E  E  R  R  L  Q  V  F  F  V  N  *  C  K  *  G  V  S  F  C  S  A  F  K  M  *  A  R  N  I  G  V  S  *  C  F  *  L  L  P  V  R  G  *  V  P  Y  *  A  Y  G  D  T  N  Q  *  Y  S  F  S  L  L  I  L </first_frame>
            <second_frame>  P  Q  R  R  M  T  L  N  M  F  F  *  V  N  L  V  A  S  L  G  *  P  I  V  R  L  L  E  C  T  K  V  *  L  S  R  L  L  G  N  K  Q  R  *  S  *  L  M  D  R  *  R  R  P  K  W  Y  S  *  M  S  C  R  R  M  L  A  C  R  H  I  M  L  R  I  *  *  R  A  S  Q  Q  Q  N  W  R  Q  P  S  R  L  L  L  V  R  E  G  L  A  L  R  R  L  E  N  *  K  S  L  Q  *  T  *  I  P  *  Y  P  K  V  Y  V  R  I  F  S  K  R  L  W  L  I  S  S  H  L  V  L  E  S  L  T  K  K  R  Y  M  K  M  S  Q  K  I  L  I  *  M  L  R  R  P  K  K  L  F  M  N  *  L  V  A  D  Y  Q  T  H  L  F  R  P  C  H  F  *  G  R  E  I  I  K  H  W :   F  I  L  S  M  I  C  *  L  V  T  R  P  F  L  Q  S  H  Y  L  G  R  Y  Q  K  N  C  L  I  C  S  S  Y  I  *  R  V  I  P  H  Q  K  S  C  P  G  Y  S  I  C  *  V  *  V  I  Q  Q  R  R  H  *  E  L  *  R  I  E  N  Y  Q  M  G  Q  G  K  R  S  L  Y  F  N  S  V  I  A  A  T  D  K  C  L  S  V  V  D  G  E  R  R  D  G  C  R  Y  F  L  L  I  N  A  S  E  V  Y  L  F  A  V  L  L  R  C  E  L  E  T  L  G  S  H  S  V  F  S  Y  Y  P  C  G  V  K  Y  H  I  K  H  T  E  I  P  I  S  N  I  H  F  P  F  *  S   </second_frame>
            <third_frame>   H  K  E  G  *  L  *  I  C  F  S  K  S  T  W  *  H  P  W  V  D  R  *  *  D  C  W  S  A  P  R  F  S  *  A  G  F  *  A  T  S  R  G  D  L  S  *  W  T  D  N  E  G  Q  N  G  T  A  E  *  V  A  E  E  C  W  L  A  A  T  L  C  S  E  Y  N  K  E  H  H  N  N  K  T  G  G  S  P  R  D  C  C  W  S  G  K  A  *  H  *  G  D  *  R  I  E  R  V  F  S  R  H  K  Y  H  D  I  R  K  F  T  *  E  S  F  Q  K  D  S  G  *  Y  L  L  I  W  Y  W  R  V  *  R  R  R  G  I  *  K  C  P  K  R  S  *  Y  K  C  *  E  G  Q  K  S  C  S  *  T  S  S  *  P  I  I  K  L  T  Y  S  G  R  V  T  F  K  A  E  K  S  *  S  I   : G  L  F  S  Q  *  S  V  S  L  *  Q  G  R  S  C  N  P  I  I  L  G  G  T  R  R  T  V  *  S  V  H  R  I  F  E  E  *  S  P  T  R  K  V  V  Q  V  T  V  S  V  R  Y  K  *  F  N  S  G  D  I  E  N  C  E  G  *  R  T  T  K  W  G  R  G  R  G  V  C  I  L  I  L  L  *  L  L  L  I  N  V  C  Q  L  *  M  G  R  G  E  T  V  A  G  I  F  C  *  L  M  Q  V  R  C  I  F  L  Q  C  F  *  D  V  S  *  K  H  W  G  L  I  V  F  L  V  T  T  R  A  G  L  S  T  I  L  S  I  R  R  Y  Q  S  V  I  F  I  F  P  F  D  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0005K22.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134520" stop="135095"/>
                    <exon start="135193" stop="135435"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTKKDDSEYVFLSQLGSILGLTDSEIVGVHQGLAEQAFRQQAEVILADGQITKAKMVQLNELQKNVGLPPHYAQNIIKSITTTKLAAALETAVGQGRLSIKEIRELKESSVDINTMISESLRENLFKKTLADIFSSGTGEFDEEEVYENVPKDLNINVEKAKKVVHELARSRLSNSLIQAVSLLRQRNHKALVYSLNDLLACDKAVPAIPLSWEVPEELSDLFIVYLKSDPPPEKLSRLQYLLGISDSTAETLRTVKDRELPNGAGEEEFVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 114 chains have been computed
$ 
$ memory statistics:
$ 16784 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2098 bytes was the average size of a spliced alignment
$ 14048 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1756 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 135 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:27:02
-->
