<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:24:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568780" ref_strand="+" ref_description="SGN-U568780 Tomato 200607#2 [28 ESTs aligned] (*GB) gi|157342463|emb|CAO65175.1| (e_value=0) unnamed; (*ATH) AT3G14270.1 (e_value=0)  Symbol: None | phosphatidylinositol-4-phosphate 5-kinase family protein, similar to SP:Q9Z1T6 FYVE finger-containing phosphoinositide kinase (EC 2.7.1.68) (1- phosphatidylinositol-4-phosphate kinase) (PIP5K) (PtdIns(4)P-5-kinase) {Mus musculus}; con... ; (*SWP) sp|P34756|FAB1_YEAST (e_value=9e-76) 1-phosphatidylinositol-3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae GN=FAB1; ">
      <seq>gttagggtcactacagcaagattatccttcctcaccttccgaccaactgattattgtagtatgcctttcaacacgctgtgtttggaaaggaactgtttgtgagccacctcatatttctcgaataaaattttatgggattaccgatatgcctttgggacggtttttacgagaccggttgtttgatgagaattttaggtgtccctcatgtgaaatgcctccagaagcacatgttcgttgctatactcatcggcaaggcagcctcacaatttctgtaaagaagctacctgaatgtatcttgccaggagaacaggaaggaaagatatggatgtggcacagatgtctgcgatgtcctcgggacaatggtttccctcctccaaccaggagggtagtaatgtctaatgctgcttgggggttgtcatttgggaaatttttggaactcagtttttcaaatcatgcagcagcgagcagggttgcaagttgtggtcatcttcttcaccgggactgtctccggttctatgggtttgggaaaatggtagcttgttttcgatatgctcctgttcatgtttattctgtctttctcccacctccaaaactcgaatttagctatgataatcaggagtggattcagaaagaaggtgatgaggtgcgcagaagggctaatgcgttgtttgctgaggtgtccaaagttcttcatgtcaagttggaaaaattctctgttgatagcagcttgaaagcacccaagacaagtgagcagatcacagagatggaagaaatattagagaaggagaaaactgagtttgagggattattacgcaaggcacttagcagggagatcaaagttggtcagcctacagttgacatccttgagataaatcaactgagaaggcagttggtttttcatgcttatctatgggacagacgtttgatacatctttccagttctcatggtaaaaattcccgaactccgggcagtttgacacaactgaaggagaaacccctcagctctagtgaggaacttcctgaaaggactgcaattttgagacctggaaaaagtttggggagctatgattcagctcttcagaatgtgaagactgaaataacatctagtgaaggaagacatggtcagattcctgatggggttcacgaaagattgactactgatgagaacctaactcacgggaaagactgcgagattttctgtgctataagaaatacaggagatggtaatgtactggaacctggaaaaaatgtcagacgtgttctttcagatgcaaagttcccgtctgtgggaagtttatccgacactcttgatgctgcatggaccggtgaaagccacctggctattaaagagcataacagtgcatttccaggttcgttcgttgtagattctactgctttgactggagtttcagcaaatacagatgtcgaaaggtctctgtgtgacaaaaatggggctgaaatacctcatttatctgctaagtctgacaacacagattacctgacctgggcaacggcacatttctcaaatttctatcgttcgttcaacaagaatatcacagcaaatccacaatatgttgctaaattgaatgagcataatcctgtttatatcttgtcgtttagcgaattgctacatcaaggtggtgccaggcttcttacagctgttggtgaaaatgacattgttattccagtttatgatgatgagccgacaagtatcatctcatatgcacttgtctcaccagattaccgcaatcaaatgtcagatgaatctcaaaacctgaaagaaaatcacaagttttcagcttctttgtcatttctggattcattaaatctacttccgcttcactctgtggatggagtagtttcggaatctccaagaagttttggatctaccaacgaaagcatgtcatcgggttatagttctcgcagctcaaacatggatccaccagcatatattaatgctttgcatgcccgaatatctttctcagatgatggccctcctggaaaggttaagtacacagtcacctgctattatgcgaagcaattcgagaccttgagaaagtcttgttgccccaatgaatcagactttatacgttcccttagccgatgcaaaaaatggggtgctcagggtgggaagagcaatgttttctttgccaaaaccttggacgaccgatttatcatcaagcaggtaacgaagacagagttggagtcatttatcaagtttgcaccagcttactttaagtatttatctgactcaatagctagtgggagcccaacttgcttggcaaagattctggggatctaccaggttacatcaaagcatctcaaaggtgggaaagaatcaagaatggatgtgcttgttatggaaaatcttctttttaagcgcaacatcactagactgtatgacctcaaagggtcgtctcgatcacgctataatccagattcaagtggaagtaacaaagttttacttgatcagaacttgattgaagcaatgccaacttctccgatttttgtgggaacgcaagctaagcggctgctgcagagagctgtgtggaatgatacttcatttctagcgtcaatagatgtgatggattactcattactagttggggtggatgagaagaagcaggaactggtgcttggtattattgatttcatgagacagtatacgtgggacaagcatctcgagacttgggtaaaggcttcaggtattctaggtgggccgaagaatgcagccccaacggtgatttctccaaagcaatacaaaataagattcaggaaagcaatgtctacatactttctgatggtgccagatgagtggcctacatgaagtgataccccaagtatcagtgcagaaaaattgccccggccggtcttggtataattttatccatcctttcttatgccatcaagttttgtgtattttgtgcaggaatgttgggtagttgctttatcattagaggattacttttgtttttccaaagtagtagtattacagagttatttccatacaaagaatttgttagtttctgggcgttccgccagttgtacagtcaatagtcggtcttcgtttctttttatcccacattctgatgctcaatggaagctcttggtatattcatgtgtttacatgagaattgagactcttttgacaagggctgccgtggtagcagtaaagatcaatgtaatttgatcttgtaagtcctacaatcggatggtttcaaataagctgcactcgcgacattttgattttcaggcacctatgcaatgagttgtacttgtcgcgattcttcgcctccttcctattttgcacacggtataggttggtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="+" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="11689" stop="25043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11989" g_stop="12175" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12176" i_stop="12274" i_length="99">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12275" g_stop="12606" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="519" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12607" i_stop="15315" i_length="2709">
            <donor d_prob="0.569" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15316" g_stop="15439" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="643" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15440" i_stop="15524" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15525" g_stop="15683" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="802" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15684" i_stop="16812" i_length="1129">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16813" g_stop="18315" g_length="1503"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="2305" r_length="1503" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18316" i_stop="23307" i_length="4992">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23308" g_stop="23574" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="2306" r_stop="2572" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23575" i_stop="23989" i_length="415">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23990" g_stop="24744" g_length="755"/>
          <reference_exon_boundary r_type="cDNA" r_start="2573" r_stop="3327" r_length="755" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="+" ref_id="SGN-U568780" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>3327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11989" e_stop="12175"/>
          <exon e_start="12275" e_stop="12606"/>
          <exon e_start="15316" e_stop="15439"/>
          <exon e_start="15525" e_stop="15683"/>
          <exon e_start="16813" e_stop="18315"/>
          <exon e_start="23308" e_stop="23574"/>
          <exon e_start="23990" e_stop="24744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGGGTCACTACAGCAAGATTATCCTTCCTCACCTTCCGACCAACTGATTATTGTAGTATGCCTTTCAACACGCTGTGTTTGGAAAGGAACTGTTTGTGAGCCACCTCATATTTCTCGAATAAAATTTTATGGGATTACCGATATGCCTTTGGGACGGTTTTTACGAGACCGGTTGTTTGATGAGGTAATGTCTCTCTTCCTCTTTTAAAGTTGCAGTGGATATATTCTATGCATGCATGGTTTATTCTTGTCTTTTTTCTGATATATGTAATACATTCACCAGAATTTTAGGTGTCCCTCATGTGAAATGCCTCCAGAAGCACATGTTCGTTGCTATACTCATCGGCAAGGCAGCCTCACAATTTCTGTAAAGAAGCTACCTGAATGTATCTTGCCAGGAGAACAGGAAGGAAAGATATGGATGTGGCACAGATGTCTGCGATGTCCTCGGGACAATGGTTTCCCTCCTCCAACCAGGAGGGTAGTAATGTCTAATGCTGCTTGGGGGTTGTCATTTGGGAAATTTTTGGAACTCAGTTTTTCAAATCATGCAGCAGCGAGCAGGGTTGCAAGTTGTGGTCATCTTCTTCACCGGGACTGTCTCCGGTTCTATGGGTATGCTGTTTCCAGTAAGGCATTTGTACGCATCATCTTTCTACACTGGGATTGCAATGCTTTCACCTATTTGGATGAGTGCTCTTTTTCTTTAATCAGCTACCTAATATCATGTAAAGTATGTAGAGAGACAGAAACCCGTTGCATTAGTAAAATTATCATAAAAGCCTCAGACGCATTTCCTGTATAATGGTTAAAGTTGGTATCAGCAAGCAAGTACGTTATTTCAAATAGACAGTTTCACATAAACTTGTGGAAACATTACCTTCTAAGTTGTTAAAGTAGGCGCCTAACCCCACTTCATGTGAAAATTTTCTAACTTGAATTGACTAATATAGACTTGCTGATAACAGCTACTAATGACAAACTCCTCAGTGACATTAGGTCATAGGTTGGATCATTTTGTTTACCAGTGTTTTGTCTGGTTGAGCCGTTGAGGTTCTTAATATTGCATGGATCCTCAGCTTTTAGTTGTTTGCATGAATACTATGATGATGTTGCTCATCAGCATGTATCAACTATCCTGACTGTTTTATATTAAGATTTACTGAACGCTCCAAGGCAGGTCTCCCAAAAACTCTCTCCCCTACTTCTTAGGAGTGTAAAACGTCTTTTCCAGTGGTTTTCAACTGGGAAAACCTTTCTTTTTCTTCTAATCTTAAGTCATCACCTTCTGTGATAGCTTTCAACCTTTTCTTTCTTCATTTTCAGAGATGGGGGATAATATTATTTACTTTAATGCTGGTTTTAAATCCTCCGACATTACTAGATGGACTGCTGGAACACCATTTGTTTTGTATGGGTGAAGAGAAGCTGTTATAATGAGAAGTCCTGCATTAGCAGTAAGATCATGGAATGAATATGCTCTGTCCTTAAAGAGTCCTTGACAGATCAGAAGAATGTGGTAAGGAGATGGAAAACCATAGACCAGGGCCCAGAACATTTTTTGCACCAGAAAATCTAACGAACGAGGGAGATATATGAATATCTTATCCTTAAATGGTGGTGGGAGATCTGTCATTAGTATCCCGGAAACAGTTTATAATGCTGGTTGGTGTGATATTGCATTTAAGGTAGAAAGATTTATTAAATGATCTCCAAAGTTGGATGAAGTGGAGGCTTGGCCCTCTTGAGTCTTGTGTGTTTAGAAGGTACCACCTAAACTTAAAGGCAAGTTTTAAGAAGAAGTGGTTAGACTGGCGTTATTGTATGGGCAGAGTGTTGGCCAGTCTAGAACTCCGATGTATTGAAGATGCAAGTCTCGGGAATGAGGTTTGAGATGGGTGTTGGGCACACTAGGAGAGATAAAATTAGAAATGAGGTTACTTCTTGACAAGGTGGGAGTGGCCTCTATGGTGGACAAGATGCGAAGCAAGACCAAGATGGTGAGGAGATGTGTAGATGCCCAATGAAAAGGTGTAAGAGGTTGGTCATAGTGAGTATGAGGAGAGAGAGGTAGACCGAAAAATTATTGGGGAGAGGTGATTAGACGGGACATGGTGCAACTCCAGATTACCGAGGATGACCTTAGATAGGAGGGTGTGAAGGTCGGGTACAGAAGGCTAGTAGGTATGGAGTGTCGTCTTTTTTTTGAGGTGTTTAGCCGTTTTCTTATAGCGTCTTGCTTTTGATTCCACCATCACTTGTTGATTGTGTTTAGGTTATCCCATTATTTTGTGGTTGTTACTGTTTTCTTATTAGTTGCTTTGTTTCTCCACTGTTGTTTTCCCTTTTTCATTATTCGGATATGTTCTACTCGAGCCGAGGGTCCTTCAGGAACAGTATTCTTACCTCCATTAGGTAGGGTTATGGTCTGGGTACACTCTATTCTCCCCAGACACCACTTGTGGGATTTCACTGTGTGGTGTTATTGTTAGGTTCTACATAGAGGTAGATCAGTTTTGTTTCTCGAGTACACTTGTAAAATGTGGTTTCAGTACCGCCCATGTGCTGTTTTCCCCACTTTTATATGTTTTTATATATTGGGTTTACTGATTTATTTTTGCTTGTTCCAAATGTTTCTGTGACCTAGAATTTACAATTTGAACTTCTTGTATTGCTCTATGGGAGAGCTTGTGATGCTACTTCTTATTGCGGTCTGTTGACTACATCATTTTATCAGTATAGATATGGAGTCCCTGCTAGGAAAAGGGAACTTCTGTTAATAAGAGAGAACACTACAACAAGAGAATGCTTCCAGAAATCTTGACAAAATGGATAAGTTGCATCACATCGTATAAAAGGCTTATAAGTTGCATCACATAGTGGAAAGGCTTAGAGAAACTGGATATTTTCCTATCGCTTGAACCCTTTCACTGGAGAACTCAAGGGGGAAAAATTCTTCAACATAGTCACTAGAAGGTGGTCTACGACCATTAGATCCCTAGAAAGAGGAGTAACTAAGAAGAGAGAGATATAAAAGAAGGAAAGGAATATCAGGAAAATCTTACAGGTGTATGGTTTTCTTGTCATTTTTGTTACTGTTCCATTTCTAGTTTTTTAATGGTGACTTCCCCATATTCTGGGTTAATAGTCTCAGTCGGTGTTGTGTTATCTTGTGCTCGATTCTGGTTATGGTGCATGTGTAGCAGGTGTTCCGTTCTAATCTTTCTTAGATTTATTCATTTGATGGTCCCACAAAGTATTTATTTCCCTTTCTTGTTGCTGAAACAATGCTTTTCTGCACCTCATCTTTGGTTGTTGCCACAGGTTTGGGAAAATGGTAGCTTGTTTTCGATATGCTCCTGTTCATGTTTATTCTGTCTTTCTCCCACCTCCAAAACTCGAATTTAGCTATGATAATCAGGAGTGGATTCAGAAAGAAGGTGATGAGGTACAATTGGATTAAATTCTTGCGTTAGTTTTGATACTTCTATGTTTTGCTTTTTTCCTGATGTGTTTGTCTCCTGCAAGAGAAGGTGCGCAGAAGGGCTAATGCGTTGTTTGCTGAGGTGTCCAAAGTTCTTCATGTCAAGTTGGAAAAATTCTCTGTTGATAGCAGCTTGAAAGCACCCAAGACAAGTGAGCAGATCACAGAGATGGAAGAAATATTAGAGAAGGAGAAAACTGAGTTTGAGGTGGTTTCTTGTTTTTTCTTTCCTGTTGTTGAGATACTAAGTCATAACATCTGCATTGTCAGTGATGTATGAACAAATTTGTCAATCTGGTCTATTGAAAATGTAGCGATTAGTGACCTGTTTGAAGTTCAACTATTTGAGAGATGATTTCCAAAGTAATATCTCTCTTCTTTGGTGTGGATAACATGTTCCAAACCTTTTTAACTTTTTTAAACAACTTGAGAGTTTTAGTATGATTTGTGAGAAAATTCAGAGGCATGTTCCATCATTCTAAGATATGTGAAAATCAATGCAGCAGCAAGTTTGAGAAGAAAGAAATGATCAGGGTTCTCTGTAAGAATTAGCAGTAAAAAAAAGAATATAAGAGGAGTCAACAGAGGAAAACAACTGATTGAAGAGAGACTACAGTCCCAAGATGAACATGTATCCTAGGTCCTTTTGGTTCTAACAGAGAAAGGGTCTTTGGTTTGACTAGTCATCAAACCAGAAGTTGGGTTTCTTCCATTATAAATGTGTAATATAGAATCCTTCCTTTTGATGGGTCACCTCAGGAAGAAAGCGTTTTAATCTTTGAGTAATTGAGACCATACCCCATATAACTGTTAGGTCTAGGTCCTCAACCTTACCACCTTCCTCTGGGGCAATTAGGAACTCCCTCAACTGGAGGACTGTTCCTCAGAGCTGCACTTCAATTGCTGCTGTTTCTCTCAGTAGATGTACAGCTGTTGGGAACTTCAGTGTAAAGGGCATTATAACTCAAAATACATCTATTTCTTCTAATTAAAAGTCTGTTTGGTGGTAATTTTTCATTTAAGGCATGACCTCAAGTTTCCTTCTGAACAACAACTGCACCCCTGGGGATGAGTGGTTGCTCAATACCATCCCCTCTCTAGTCACAGCAGAAGATAATCAGTTTCTTACGGGCCCTCCTAATACGGAATAGTTCAAAAGTTAATTTTTAGCATGTGGGCACGCACTAACCCCCAAAAAGGTCCTCCCCATAGCCTTTAAAGCCTTATTTAGGGTAGATTCTTTTATTTCCTCTGTTCACCCTTTTCATTTTCTTTTGGGTAAGGTAGCAATGTAGCTCCAAATGACTTATTTCTTACTGGTGTTTTCATTGTTCTAGGGATTATTACGCAAGGCACTTAGCAGGGAGATCAAAGTTGGTCAGCCTACAGTTGACATCCTTGAGATAAATCAACTGAGAAGGCAGTTGGTTTTTCATGCTTATCTATGGGACAGACGTTTGATACATCTTTCCAGTTCTCATGGTAAAAATTCCCGAACTCCGGGCAGTTTGACACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAGACTGCGAGATTTTCTGTGCTATAAGAAATACAGGAGATGGTAATGTACTGGAACCTGGAAAAAATGTCAGACGTGTTCTTTCAGATGCAAAGTTCCCGTCTGTGGGAAGTTTATCCGACACTCTTGATGCTGCATGGACCGGTGAAAGCCACCTGGCTATTAAAGAGCATAACAGTGCATTTCCAGGTTCGTTCGTTGTAGATTCTACTGCTTTGACTGGAGTTTCAGCAAATACAGATGTCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATCTCAAAACCTGAAAGAAAATCACAAGTTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTCCGCTTCACTCTGTGGATGGAGTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGCAAAGATTCTGGGGATCTACCAGGTATGCTGTATATCATTTCTAAGTAACCAAAGTCATTGTTATAATCAGTATTTTCAGCTTTCTGATATCTATGTGCAGTGGAGCACTATTATTCTGGTGAAGCAGTCTGGGGTTGTAATTGTTAGCCAATTTGGCGTTTTTTCAGCTTATTATTATTTTACTGTTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGCTAGACTTAGTCAACTTTAATTGCTCAACTTTCTGAAGTTAGTGGCCCCATTATGGTTGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTTAGTTTTAATGTTTATGTTTTTTACTTGTATAAATTTAGACATTCTGCAGATTAATATACACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAATAGTGGCATCAGAGCCTCTAGTTGATCTTACAAGACAAAAAAAAAGTTTTAACCTACAACACAAATGGCATCCAACAACCTACCTTTAAATCCACCATTCACTTTCACTGGTGAAAATTACCGACTCGGGTCTGTGAAGATGCAAGCTTTTTTGGAAGCCTATAAACTTTGGGAAATCATGACGGAAGATAAACCACTTGCTGCTCTACCAGCAAATCCTACCTTGGCTCAGATCAAATCCAACAACGAAGAGAAGACAAAGAAATCTAAAGCCAAGTCGCTTATGCAGAATGCTGTGGCAGATACTGTGTTTTACAGAATCATGGCTTGCAAAGCTGCAAAAGAGACTTGGGATAGGTTGAAAGAAGAATATCAAGGCAGCGATAGAACACATCAAATGCAAGTGGAACCTAAAAAGAGAGTTTGAGTCTTTGAATATGCAGGAGGATGAAACTATTAGTAAGTATGCTGATCGAATATCCTTAATTGTTAATAACATTAGACTTTTTGGTGAAGAATTTACAGACAAACGAATTGTGGAGAAAGTTCTTGTGACTCTTCCTGAGAGATTTGAATCTAAGATTTCCTCTCTTGAAGAATCCAAGGACCTGAGCAAACTTTCATTAGGTGAACTAATGAGTGCTCTTCAAGCTCAAGAGCAAAGGAGGACTATGAGACGGGAAAAGTTCATTGAAGGAGCTTTCTCTGTACAAAAGCAAAAAGGAAAGCAACAATTCCACCAAAAGAATAAGGGCAAGCATGATTGAGGAAACAATAGTGGAGATGTGAAGCAGAAGTTCCCTCCTTGCAAACATTGTAAAAGAAATACACATCTGGAGAAGTATTGTTGGTGGAGAGTCGATGCTATATGTGGCAATTGTAAGTAGACGGGACACGTATCCAAGGTTTGCAAATCAAGAGCAAAGGCCTCTGGTGCTTTGCAAGAACAAGTAGCAGAAACTGACGATGCACATGAAGAGCAACTATTTGCAGTTTCCTACTTTTCAATCAGTGAATCCTCTGATTCATGGCTTCTTGACAGTGGTTGCACAAATCACTTGTGCAACAAACTACTCAAATTCCTAGATGATACTTACAAATCTAAAGTAAAAGTGGGAAACAGTGAGGCAGTAGAAGTCAAAGGCAGAGGTACAGTGTCTATCTCAACAATATCAGGTATCAAAACTATTTCTGATGTTTTGTACACACCTGATATGAGTCAAAATTTGTTGAGTGTTGGACAGATGCTTGAAAATAATTATTCTCTGTATTTTAAGAATCGTGAATGTGTTGTTTCCGACCCTTCTGGAGTAGAGTTATTCTATGTCAAGATGAGCAACATAATGTTTTCAATTGATTGGGAGAAAATAACAGAGCAGGCTTACACTATTACTTCACAAACATGTACAAACCTATGGCACAAAATACAAACCTATGGCACAAAAGGTTTGGTCACTTCAATCTGAGAAGCATCGCCGAGATGAAAAAGAAGGAGCTAGTGGAAAATATGCCTGAATTTCTTTCTAATGCTCAAGTTTGTGAAACTTGCCAACAGGGAAAGCAACCAAAATTGCCATTTCAAGCAAATCAAGTACGAAGAGCTAACCAGAAACTTCAGCTCATTCATATGGATGTTTGCGGCCCAATGAAAACAGATTCGTTGAGTGGTAACAGATACTTTCTCCTCTTTATTGATGACTACAACAGAATGTGTTGGGTTTATTTCATAAGACTGAAGAGTGAAGTCTTTGATGTTTTTAAACAATTTAAAGCTTTAGTAGAAAATCAATGTAATCTTAGTATTAAGGCTTTAAGGTCTGACAATGGAGGAGAATACACTTCTTCTCAATTTGTGGAAAACAAGGTCTGACAACAGAGGAGAATACACTTCTTCTCAATTTGTGGAGTTTTGTAATAGCACAGGTATTGAACGCCAATTGACATTACCATACACTCCACAACTAAATGGCGTGTGAGAAAGGAAGAACAGGACAGTAATGGAGATGGCCATATGTCTTTTGCTCGAAAGAAAGATCCCAAATCAGTTTTGGGCTGAGGCAGTCAATATCTTTGTATATTTGCTGAACAGATTGCCTACTAAGGCCTTGCAGGACATGACTCCATATGAAGCTTGGTGTGGGAACAAACCATCAATACACCATCTCAGAATCTTTGGGTGTATATGTTATTATCGAGTTCCAGAAACAAAAAGGAGTAAGCTGGATAACAAGGCTTATAAAGGCATATTTATGGGCTATAGTTCATCCAAAGGTTACAAAATTTTCTGTTTTAAATCAGACAAACTAATTCTCAGCCGAGAAGTGAAGTTTGATGAAGCAGTTGGTTGGGATTGGATCAGAAGACCTCTTATTCTGATTCATTTTCAATAGAGCAGCCTCAACTTTCAGAAGATGAACTAGTGGATGATGTACCAGTGAGGGGAACTCGATCCTTAAAAGATGTCTATCAGCGGTATAACTTGGTTAGCTCTGAACCAACAAGCTATGCTGAAGCACAAGACTCTCAGGCATGGAGAAGAGCTATGCAAGAAGAACTAGACATGATCGAGAAGAATGGAACCTGACAGCTTGTTGACAGACCTAGAAATCGCAAGGTAATTGGTGTAAAATGGATTTTAAGACAAAACTCAATCCTGATGGAACAATTTGCAAACATAAGGCTAGATTGGTGGTGAAGGGATATGCACAACAATATGTGTGGATTACCAGGAAACATTTGCTCTTGTAGCAAGGTTTGCTTGCTCAACTACTGGAAAAGAGGATCAAGTTTATCTCTTAACAAAGGCTTTGTATGGCCTAAAACAAGCCCGAAGGGCATGGTATGAGAGGATGGACAATCATCTCATCCAACTTGGCTTTAGTAGAAGTCAAGTGAAGCTACTTTATATGTGAAAGTCAATGCTGCAGGTGAGTCCTTAATTGTCTCAATTTATGTGGATGACATGCTTGTGACAGGAAGCAAAATTGAACTAATCCAAAGGTTCAAGGATGAAATGGAGAAAATCTTTGGAATGACTGATCTTGGAGTCATGAAGTACTTTCTCGGCATGGAAGTGTTGCAATCCAGTGATGGAATTTTTATATGCCAGCAGAAATACATTTCGGATATTCTAAACAGGTTCAAAATGCAAGACTGCAAACCTGTGAGTACTCCAATATCTATTGGTGTGAAGCTTGCCAAGGATGAGGATTCCGAAAAAGAGGATGATAGTATGTATAGAAGCTTAATTGGCAGTCTTCTATATCTAACCGCAAGCAGGCCTGTCATTCTATTTGTTGTTAGTTTGCTCTCTAGGTTCATGCATTCACCTAGAGACACACACCTCACAGCTGCTAAAAGAGTGTTAAGGTATATTAAAGGAACCAACAAGTTTGGAATTTTTTTCCCAAACATCTGCCGAAGTAACTATGAACTTGATCGGGTACTTTGATAGTGATTGGGGTGGTGGAGTTGATGATTCCAGAAGCACATCTGGATATCTTTTCTGTTTGGGGACAAGTTGTTTTAGTTGGAGCTCTAGAAAACAAGAAACTACAGCTCAATCAACAGCAGAAGCTGAGTACATAGCTGCTGCATCTGCTGTGAATCGAGTTATCTGGCTAAGGAAGATGATGATGGACTTAGGCCATAAGCTACCAAGATCATGTGTGACAACAGTTCAGCAGTTTCAATCTAAAAAAATCCAGTGTTTTATGGTCGAACTAAACATATCAAGATCAAGTTTCATTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAGTTAGTGGCCCCCTTTTATGGTAGTTAGTGGCACATGTTCTTATTTAGTTTTAATGTTTATGTTTTTTCTTTGTATAAATTCAGACTTTCTGCAGATTAATATATACAAGGAATTTCATAAGTTCACTCTATTTTTATTTTTTCAAATCAGTTTCTTGAGTATTTTTGTTCTAACAGTAACTAAGTTGTGTCTGTGGGTTATTATGTCCATCTGGTCTTCTATTGCAACTTCTTATTGTCAAAATATTTGAAGAATGTGTAAGATTATCATTGTTAAGCCTCCCATTTTAAAGTCACTTATTTTTCTTGATTGAGCTAATTTTCCAACATAGTCAGTCCTGTGCTTCAGAGGTGCTCCTAGCTGTACCCTAAATAAAACTAGGAGGTCACCCAAAAAAGTAGTATAAATTGGTTCATAAGATGGATCTAGCTTCTGCACTTTGCACTGCCCTTGAAATATTTTCTTTACAAAAGATGATGCCCTGAAATTTATATGCTCTCCAATTTTTAACTGCATTATTGGATGTTTGTTAGGTTACATCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCGGTAAGCTTTGAAACAGCACCGATATGACTAGTAACTTCGTTAAATTGTGTTCTATAAAGAGTTCTGTATTTCTTCGTTCTAGCTGGGGTTACTAGTTTATTATTTCCTCTCTTCAATAAAGATTATAGATGATTGCTGGACCCGTCCCCCTTTTCTCCCTTTGCCACACCCGGTATCTTTTCTTTGTTTTCTAATTGTTTCTCCTTTCTTTTGCAAGATGCACTTGACCTTGTCACTGCACTAGTTCTCTCATTTGTTAGTAGGTTCTCCAAACTTTTTTGTTAGTCTATGTTAACCACCACCAAGTATACGTTGAAGTGTCCAAAGTGGGACTTCATGCTCTTCAAACACGTATTAGACGCAACTTATGTTTCAGTCCCTCCTCTGCTATATTAATAGAGTTATGGTTTTGCAGTCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGATGGTGCCAGATGAGTGGCCTACATGAAGTGATACCCCAAGTATCAGTGCAGAAAAATTGCCCCGGCCGGTCTTGGTATAATTTTATCCATCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAGGAATGTTGGGTAGTTGCTTTATCATTAGAGGATTACTTTTGTTTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTCTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTTATCCCACATTCTGATGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATGAGAATTGAGACTCTTTTGACAAGGGCTGCCGTGGTAGCAGTAAAGATCAATGTAATTTGATCTTGTAAGTCCTACAATCGGATGGTTTCAAATAAGCTGCACTCGCGACATTTTGATTTTCAGGCACCTATGCAATGAGTTGTACTTGTCGCGATTCTTCGCCTCCTTCCTATTTTGCACACGGTATAGGTTGATCA</genome_strand>
        <mrna_strand>GTTAGGGTCACTACAGCAAGATTATCCTTCCTCACCTTCCGACCAACTGATTATTGTAGTATGCCTTTCAACACGCTGTGTTTGGAAAGGAACTGTTTGTGAGCCACCTCATATTTCTCGAATAAAATTTTATGGGATTACCGATATGCCTTTGGGACGGTTTTTACGAGACCGGTTGTTTGATGAG...................................................................................................AATTTTAGGTGTCCCTCATGTGAAATGCCTCCAGAAGCACATGTTCGTTGCTATACTCATCGGCAAGGCAGCCTCACAATTTCTGTAAAGAAGCTACCTGAATGTATCTTGCCAGGAGAACAGGAAGGAAAGATATGGATGTGGCACAGATGTCTGCGATGTCCTCGGGACAATGGTTTCCCTCCTCCAACCAGGAGGGTAGTAATGTCTAATGCTGCTTGGGGGTTGTCATTTGGGAAATTTTTGGAACTCAGTTTTTCAAATCATGCAGCAGCGAGCAGGGTTGCAAGTTGTGGTCATCTTCTTCACCGGGACTGTCTCCGGTTCTATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGGAAAATGGTAGCTTGTTTTCGATATGCTCCTGTTCATGTTTATTCTGTCTTTCTCCCACCTCCAAAACTCGAATTTAGCTATGATAATCAGGAGTGGATTCAGAAAGAAGGTGATGAG.....................................................................................GTGCGCAGAAGGGCTAATGCGTTGTTTGCTGAGGTGTCCAAAGTTCTTCATGTCAAGTTGGAAAAATTCTCTGTTGATAGCAGCTTGAAAGCACCCAAGACAAGTGAGCAGATCACAGAGATGGAAGAAATATTAGAGAAGGAGAAAACTGAGTTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATTACGCAAGGCACTTAGCAGGGAGATCAAAGTTGGTCAGCCTACAGTTGACATCCTTGAGATAAATCAACTGAGAAGGCAGTTGGTTTTTCATGCTTATCTATGGGACAGACGTTTGATACATCTTTCCAGTTCTCATGGTAAAAATTCCCGAACTCCGGGCAGTTTGACACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAGACTGCGAGATTTTCTGTGCTATAAGAAATACAGGAGATGGTAATGTACTGGAACCTGGAAAAAATGTCAGACGTGTTCTTTCAGATGCAAAGTTCCCGTCTGTGGGAAGTTTATCCGACACTCTTGATGCTGCATGGACCGGTGAAAGCCACCTGGCTATTAAAGAGCATAACAGTGCATTTCCAGGTTCGTTCGTTGTAGATTCTACTGCTTTGACTGGAGTTTCAGCAAATACAGATGTCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATCTCAAAACCTGAAAGAAAATCACAAGTTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTCCGCTTCACTCTGTGGATGGAGTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGCAAAGATTCTGGGGATCTACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACATCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGATGGTGCCAGATGAGTGGCCTACATGAAGTGATACCCCAAGTATCAGTGCAGAAAAATTGCCCCGGCCGGTCTTGGTATAATTTTATCCATCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAGGAATGTTGGGTAGTTGCTTTATCATTAGAGGATTACTTTTGTTTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTCTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTTATCCCACATTCTGATGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATGAGAATTGAGACTCTTTTGACAAGGGCTGCCGTGGTAGCAGTAAAGATCAATGTAATTTGATCTTGTAAGTCCTACAATCGGATGGTTTCAAATAAGCTGCACTCGCGACATTTTGATTTTCAGGCACCTATGCAATGAGTTGTACTTGTCGCGATTCTTCGCCTCCTTCCTATTTTGCACACGGTATAGGTTGGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604259" ref_strand="+" ref_description="SGN-U604259 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205352|gb|AAT38797.2| (e_value=7e-19) Polyprotein,; ">
      <seq>attttattagagaagtccaacaatttaatgaagtgttgcttgttcattgttcatctgagaactagctagctgacattttcaccaagtcattgccaaaggaaaggtttgaagatccgaggcaaagaattagtgtttgccacaaaaatgccaaggaggagtgttagacaattgacattttttcagcttattattatttttactattttttacttatttcaatttagtgcttcctattttctagtagacttagtcaactttagttgctcaactttctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="+" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="22197" stop="23074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22497" g_stop="22774" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="+" ref_id="SGN-U604259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U604259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22497" e_stop="22774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</genome_strand>
        <mrna_strand>ATTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602297" ref_strand="+" ref_description="SGN-U602297 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205226|gb|ABI34306.1| (e_value=6e-16) Polyprotein,; ">
      <seq>gcaacggtaaatccagacctatgaggaggaaatgcagtaatgtaagatcgtatttgacaaatggtaccattaatgttgagtatgtcaaatcttgtgataatcttgcagatcctcttacgaaggtcttaacaagagaaaaggtctggagcacatcgagggggataggattgaagcctacaaatccttcagtcatatatgaggaaactcaacctgnggaatagagatcctataaccaggttcaaagggaaaaactaatcatatgatgacttgttatgaaaaatacactattttttccctccctatgatgtgagtgcatttgttcctatagtttgtgaaggttgagttgataaaaactcttaatgaatatctgtaacccgtatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="+" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="40749" stop="41719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41048" g_stop="41431" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="+" ref_id="SGN-U602297" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41048" e_stop="41431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGCCTTAACAAGAGAAAAGTCCTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATCCTTGAGTCATATATGAGGAAACACAACCTGGGGAATAGATATCCTATAACCACGTTCAAAGGGAAAAACTAATCATATGATGACTTTTTGTGAAAAATGCACTATTTTTCCCCTCCCTATGATGTGAGTGCATTGTTTCCTGTAGTTTGTGAAGGTTGAGTTGATAAAAACTCTTAATGAATATCTGTAGTTCGTATGGAT</genome_strand>
        <mrna_strand>GCAACGGTAAATCCAGACCTATGAGGAGGAAATGCAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGTCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATAGGATTGAAGCCTACAAATCCTTCAGTCATATATGAGGAAACTCAACCTGNGGAATAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTATGAAAAATACACTATTTTTTCCCTCCCTATGATGTGAGTGCATTTGTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAACTCTTAATGAATATCTGTAACCCGTATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590594" ref_strand="+" ref_description="SGN-U590594 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205313|gb|AAT38742.2| (e_value=2e-14) 'chromo'; ">
      <seq>gagatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagctgcntgcagcaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="+" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="48536" stop="49806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48836" g_stop="49506" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="+" ref_id="SGN-U590594" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48836" e_stop="49506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGATTAACCAGGTTCTTACTTATGTTAGCGGGTTATCTGATTAGGGACAGACACCTCCAGTGTTTTCTGCATCAGCACCTCAGGTTCCGGTAATACAACATGCAGCTGCTGTGGCTCCCCGCATGGATGCCTTATTGGAAGTAGGCATGTTTCCTCGATTGACTACAAGGTCTATAATGACGAGTAATCAACATGAACTTTTCACTAAATTCTTAAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGCTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAATGATTCGGTGTTGAGTTTGTGACCTACCAGTTTTAGGGGAATGCCAAAATGTGGTGGCAGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGAAGAAATATATACCCTAGACTTTGAGGGACAAGAAGAGAGATGAGTTCCTGAGCCTACTGTAAGGCAGGATGTTTGTTACTACTTATGAGGCTAAATTTCGGGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCTTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCTTACAGGTAGCTGC-TGCAGCAAAATC</genome_strand>
        <mrna_strand>GAGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCTGCNTGCAGCAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595870" ref_strand="+" ref_description="SGN-U595870 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=4e-63) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=4e-20) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>ctcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="-" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="51988" stop="50895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51689" g_stop="51195" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="-" ref_id="SGN-U595870" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51689" e_stop="51195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCATGCAATGTTCTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAAAGTGGAACTTCGTGCAATCGAACAATTTTTGAGATATAGAGTTTGGCTAGCTTCTCTGCATTGTGAGTCACCTTGGCCGGAATGAAGTGAGCAGACTTAGTTAATCTGTCAACAATTACCCAAATAGAATCAAACTTATCCAATGTCTTTGGAAGACCAACCACAAAATCCATTGCAATTCTTTCCCATTTCCATTCAGGAATGGGCATTTTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGCATTGGGCAACAAAATTAACAATGTCACGCTTCATTCGACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATATAATACATTGAACTATGAGCGTCTGTAAGAATAGTGTGAATCAAATTATCAACACGGGGCACACATAC</genome_strand>
        <mrna_strand>CTCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602312" ref_strand="+" ref_description="SGN-U602312 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aagatcaatgctttcatttttgaattaagttgtgtcaagtcaactatgacaatcaaagtaaaatggaacaggatgggagtagtaaaactaatcaagcagcggtaaaatctagggtacaacaagaaatttgaaaacccaaaatctgacaccaatggcgcaaagcctttcaatttacttactaactaccatcgtaaactgaatgttaccacagaaacaacagtgatgcattgatgattcttcagatgacgataaatccagaagccaaaactttaagttgttccttcaataaagctttacatgtataatctataatcaccgtaggatcgatgtatatgaattgaactgggttaaaaccttcctccatgccacaaagttcccagaacctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="+" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="62441" stop="63428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62741" g_stop="63128" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="+" ref_id="SGN-U602312" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62741" e_stop="63128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCAATGCTTTCATTTTTGAATTAAGTTGTGTCAAGTCAACTATGACAATCAAAGTAAAATGGAACAGGATGGGAGTAGTAAAACTAATCAAGCAGCGGTAAAATCTAGGGTACAACAAGAAATTTGAAAACCCAAAATCTGACACCAATGGCGCAAAGCCTTTCAATTTACTTACTAACTACCATCGTAAACTGAATGTTACCACAGAAACAAGAGTGATGCATTGATGATTCTTCAGATGACGATAAATCCAGAAGCCAAAACTTTAAGTTGTTCCTTCAATAAAGCTTTACATGTATAATCTATAATCACCGTAGGATCGATGTATATGAATTGAACTGGGTTAAAACCTTCCTCCATGCCACAAAGTTCCCAGAACCTCCA</genome_strand>
        <mrna_strand>AAGATCAATGCTTTCATTTTTGAATTAAGTTGTGTCAAGTCAACTATGACAATCAAAGTAAAATGGAACAGGATGGGAGTAGTAAAACTAATCAAGCAGCGGTAAAATCTAGGGTACAACAAGAAATTTGAAAACCCAAAATCTGACACCAATGGCGCAAAGCCTTTCAATTTACTTACTAACTACCATCGTAAACTGAATGTTACCACAGAAACAACAGTGATGCATTGATGATTCTTCAGATGACGATAAATCCAGAAGCCAAAACTTTAAGTTGTTCCTTCAATAAAGCTTTACATGTATAATCTATAATCACCGTAGGATCGATGTATATGAATTGAACTGGGTTAAAACCTTCCTCCATGCCACAAAGTTCCCAGAACCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584096" ref_strand="+" ref_description="SGN-U584096 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157342462|emb|CAO65174.1| (e_value=3e-111) unnamed; (*ATH) AT1G73430.1 (e_value=5e-107)  Symbol: None | sec34-like family protein, contains Pfam PF04136: Sec34-like family profile; similar to Conserved oligomeric Golgi complex component 3 (Vesicle docking protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) (Homo sapiens) | chr1:27607316-27... ; (*SWP) sp|Q96JB2|COG3_HUMAN (e_value=3e-36) Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3; ">
      <seq>cgttgcaatgttgtaccatccatgcttttctttggttatttgtgaagtttactatgtggacatgtctagagtcacaggtttcttctagggatatgacttcttttatcaagattaagttctattgagttaagcttgtaaatctatgcataagagcacaaataacctttgtgtttctcctctgcatcactgaagatatgtagagagtagtaacccacaatatgcagagtgcagcatttatttggtcaagtttcgacaacttcagtctcgagctctgggaatgattcgcactcacgttctttccgttcttagaagcacttcttctcaggttcaggctgcaataagaagcagcggtggtaacaagacatcttttgccgagggtatagagccatctataatatatgtacgattcaaggctgcagcaaatgagcttaagcctatcctggaggaaattgaaagcagaacacctagaaaagagtatattcaacttcttgaagaatgccacaaactctattgcgaacagcgcctttccttgataagaggtatagtgcaacagcggatctctgaattttctaggaaagaagcattgtcgtctttaactagatctggatgtgcatatttaatgcaggtgtgtcagctggagcatcaactcttcaatcacttctttccatcatcttcagaggacatttcgagtttgactcctcttgtagatcctctgtgtactttcctctatgatacatcgcgtcctaaacttattcacgaaacaaacctggatgttctttgtgaactggttaatatcctcaaagttgaagttctaggagaacagctgagcagacggaagaagtcattggctgggttacctccaacgctagacaggattctagctaatgttcatgaacgattaacttttcgtgctcgcacctatatccgtgatgaggttatcatgatagctttctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="-" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="71040" stop="64242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70743" g_stop="70482" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70481" i_stop="70317" i_length="165">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70316" g_stop="70254" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="325" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70253" i_stop="70173" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70172" g_stop="70071" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="427" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70070" i_stop="69903" i_length="168">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69902" g_stop="69798" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="532" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69797" i_stop="69688" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69687" g_stop="69595" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="625" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69594" i_stop="69058" i_length="537">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69057" g_stop="68969" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="714" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68968" i_stop="65153" i_length="3816">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65152" g_stop="64933" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="934" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64932" i_stop="64563" i_length="370">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64562" g_stop="64542" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="935" r_stop="955" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="-" ref_id="SGN-U584096" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>955</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70743" e_stop="70482"/>
          <exon e_start="70316" e_stop="70254"/>
          <exon e_start="70172" e_stop="70071"/>
          <exon e_start="69902" e_stop="69798"/>
          <exon e_start="69687" e_stop="69595"/>
          <exon e_start="69057" e_stop="68969"/>
          <exon e_start="65152" e_stop="64933"/>
          <exon e_start="64562" e_stop="64542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCAATGTTGTACCATCCATGCTTTTCTTTGGTTATTTGTGAAGTTTACTATGTGGACATGTCTAGAGTCACAGGTTTCTTCTAGGGATATGACTTCTTTTATCAAGATTAAGTTCTATTGAGTTAAGCTTGTAAATCTATGCATAAGAGCACAAATAACCTTTGTGTTTCTCCTCTGCATCACTGAAGATATGTAGAGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAGGTACTTAAAAGAATTGACATCAACATTATGTAATTTACTATCATATATAAAATTGCATTTCTTTATACAAGGCATGATTTTATGGCATTCTTGGACATATGAATTCTAATCCCATTGCCCATTCTCCTTCTCTCTGTCTGTGTTACCTTGGCCCCCTTGTAACAGTCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTTAGAAGCACTTCTTCTCAGGTAAATCTGTCTTATGCACTACAATCTTTTCTTGCAGATGAATGGTTGCATATTCTGAGATAAATACACCCATTTTATCAGGTTCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAGGTAATATTGGAACATCTCCTTGCCTTTTAGTTAGTAGAATAGAAACTCTATTAATTCGTTGTATGGCAGTGAGTATTTCTAATCTCAAAAAAAAAAAAAAAAAGAGAAAGAAACTAGGACTAGCTTTTACGTGTAATCCATGAACCAAATGAACCTAGTTACCTGCAGCTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTGGTAAGTAGTAAGCTGCTCCTTTCAGTTCTATATATATAATTAAATATATGGTTTTTTTCTTCTCCTTCTTTCATCGTTAATCAATACTCGTTCTGTTTCATTTAATTCAGATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAGGTACATTCAATGACATCAGTAATATTTACAACATTTTGTACTAGAGCATGGTATGATTGTTATATCTTGCCTTACAAAAATTGGATGACTGTTCTTTTTGTGGTGTTTGGTGGGGGTATAAGAAGAAGATGAAAAGAGACAATTCGAGGTTGACCTACCAGTTTTGATAGTCATATGAGCAATCGACATCATTTTTCTTTTATTTGACAGGATTAATTCAAAGTAATTAGTTCTCATTCTCAAAAAAATCAAAGTAATTTGTTGTAAATAAGAGAGCCACTCCTTATTTTTTCTTTCAACAGTTAGCTCATGTTAGTGTAGATGAATATTTCCTCTAATTGGATTTAGGATAAATGTGCTAAAACTATAACAGCCTTGATTTCTTTGAGGGTGGAATCATAACTTCTATATATTTTTCTATGAATCACTATTGTCAAAGTAAATATCTGATGTTGCTTCAGACAGTTTTTCTAAAGGTATATATGGGTAAACTGTGATATATGTCTCCATACCTTACGTTTGACATCGTAAATGCAGGTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCTGTGAGTTGCTTAACTTCTCTTGTGGGGTTCCTTCTGCATTTGAACAATTTTTGCTTCTTACTGATTTCCTTTCCCACTTCTTCTTTTCTAGTTTGCTTCTTTTTTCCTTTTCTTGTCTTGGTTTGTTTGGGGGTGGGGGAGGTTTGGATTATCTGTATTGTTTTTCACGCGACTTGTAAACAAGAGAGCCGCAACATAGCAAAATTTTTGTGCCAGTAAGACTTTGCTATTTTGGTAGCTTGTGCCATGCTTAAACCTTCTTAGGCCAGAGTTGCTATCAGCGGTAAGTGTGTGTAAACATTTTCAGACATTATTTGTGTGCTAATAAAAATCAGTGTGGACCATGAGGCTGCCCAATAGCTTAGTGATTGTCACTTTAGATCTTAGGGCTAGCACAAGATAAGTTCCTGGTTTGGAATTTGAAGCAGTCCTGAGGGATGTACAGCTATCTATTCCTCTGAAAGAGCTGCTCAGATTTCCCTCTGGTTTAGATTTGCAGGTTGCTCTGGCCATCAGTTATGAATATGTGCTATGTTTATATATCAAGTTAGTCTGGTCATCATTTGCTTCTGCTTCAACTGCTTTTATGACCTTAAATCTTTGGCTTTGAGATACAAATGTGGAGGTTAAATGTGAAAGTTATAGTAAATTCAAGCGAACCTGGTATTTCAAGTATATGCGTTCACTTATTCTCCAAAACATAAGTATAAGCTTTAACTCAAAAGGTGGTTAAACAACTACTTTTTGATAAAGAAGGTAGCAGAGAAATTATTTAAGTGAAGATTAAAGGGTTGGCTCATCACCTATTAAGAGTTTCAAAATGTGTGTTTGTTGCCCTTAATATTTGTCGGTTAGGTAAAAAAGCATCTTCTACGTCCAAAAAAGTAAAATCATGAAGTCTGGTAAAGCCTCATTTGTCTTCACTAAGCTGAGGATGTTCGGATTAAGTACACATCTAAATATTAAGATTTAGATATCTGAATCTGAATGCACATGAATATTTAAGATGTATTAAAAACTATATACTAAATGTTTAGGACGGTTTGATTTTCAAAAATTGAACATATTAATGTTTTTATTTATAAATTAATAAATATGAAGTTAAAAAACAAAATACTATATTTATCTCCTATTGTATCTTTAAAAAATTATATGGTGTTGGAGGTGGTGATTTCTCGTGGTGGTGGTTGTGAGTAGTAGCTAGTTGTGATGGTCGGTAGTTAGTAGTGGCGGCTAATAGTTTTGTAGTGGATAATAGTAATAGTTATTGGTGGTGATGAATGATAATGGTGGTTTGACTATACATAGCGGTGATTGTCAGTAGTGATTAATATTTGTTGTGGTAATGGTTGTTGGTGCTGGCAATTGTAAATGTGCTGTCAATAACCAACCCAAACCTAATTGGTTTGGATTTAATTTTGCCACCCCTATTCAAACCCATTTAATTTTTCTTTCTTATTAAATAACATATAAAATCAAAGAAAAAAAATTAAAAATATTTTAACAAAATTTCTCAAAAATCATTTTGTTTTACATATCAACTCAATTTTTAATGGGTTGAAATGGTTTGGGTTGAGCAAACAAATGGGCGGTCAATAACCAACCCAAACTTAAATGGGTTGGGTTTAATTTTTCCACCCTATTCAAACCCATTTAGTGCTTGTAACATGAAAAAAAAATGTACTTAATGATTGACATTTGAATGATTCAGATCTAAAAACCAAACGGACTTAATGACTGACAAATGAATGGTTAAGATTAAGACTATTATTAAATGCAAACAGATGAGGCCTAAGGAAACCTAATTGTTGTCAGTTACTACGTGTGATGTGTTTCTTTGTGATATGCTGACTTCTCTTACTATCTGGGGCTTCCAGTCACTCGGAGCGCAAAGCGGTAAAAACTGACACGGTCCCGCTTCAAGCTTTAAGTGAAGTGCTTGCTTCATTGAAGTGAAATCAAAAGAAAAAAGACCAAAATAAATAGAGACAAAATATATAAGAAAAAATTCATATTAAAACCAAATAAAGGCCCCCTTTATTTCCTTGTCACAAAACAGACATACTATTCTTATCCTATTGGTATCACCAACTTTTTTCCCATATTTTCATCCCGGGCTAGCCATTTTACATCACGGATAAGATTTGAGAAAAATAATCAACACCTATATTTTTATCATTATAAAAGAAAAAATTCAACATTTTAGTCATTGTTAAGAAACAAAACAATTCAGCAATATATATTTGATCACTGTGAGGGAAAAAATTTCGGCAACATATAATTTAAATAATCAAAGCTATACATGACAAAGGAAAGCAGAGTAACGAAAAGAGTAGCAAAAAAGAAGAAAGTCCTAGCTAGCAGTGCCACTGCACCAAAATGAAGAAGAAAGAAGAGAAAACGAAGAAAGAAAAGAGAAAAAGTACTGGAAGGAAAAAGTACACAGAAACTTTACTATTCTAATTTCTTAAGGATTAGGTAAGTCATACCTCTTTTTATTATTTAAAGGTGACCACTTCCTAATTTTTTAAAAAAAACCGCTGCTTTTCTCGCTTCACCGCTTCTGGTCGCATCGCGCTTCAAGCCCAGAAGCAGCCGCTTCTTTCACATGCCTCGCTTCAGCTGGCTGAAGTGCTGAACTCTCGCTTCGCTTCACTGCTTAAAGCGATGAAGCACTTGCTTTCCTGAACACTGCCCCCATGGGTGATATATGAAATGAGATGTCCATTATACCTATACCTTTCTTTTGGTTCATAAGTTCTCTTTTTTCCTTCTCTGGTATTTTAATGTACATGTATGTCCTTCCTGATTGTGGGGCAGAGAGATAGAAAGCCTTGCACTTTTATCCATCAAAATTTGACCTCGAATATAAGCTGTACCATATTTATAGTTTTTCTTGTCAAGTTAATGTGATTAGATAATATCAATGGAGGGAGTTACAGTTACTGATAGTCGAATCTAATGGCAGATTTCAGTGTTAGTAAGTTAATCAGCAGTGAAACATGTACCTTTCATATATGAGAAGGTAATGGAACGTGTTATTTGGTTCACTTGATAACATTACTTTTTATCTTTGCTCCATTCTAGTAATTGGAGATTCGCAATCAGATATTCTCTACCCCCTGCATTCTCAAGCTACATTTCTACTTGCCTCCTTTATTTATAAATATTCTTATTTATGTAGTCCATGATAAGTCATGTTTTTGAGCTTATGTCCTCTGCATAACATGATATGAATATTCTGTGCATAGCATATATATCCATGTGCTCCCACCCCATCTCTCAGTTGGTCCAATTACAAGCAGTTTAATGAAGCGTTGACATGTTATACTCCCTCCATCCCGTTTTAGGTTATGGTGTTTACTGAGCATGGAGTTTAAAAAAGAAAGAAAGAGTTTGAAAATTTTGGTCTATAGTAGGCCCACTTAGTCTACCCTTGAGCTGAGGGTCTTTCGGAAACAACCTTTCTACCTACACAAGGTAGTGGTAAGGTCTGCATTCACTCTACCTTCCCCCGATCCCACTTAGTGGGATTCCATTGGATATGTTGTTGTTGTGATCTATAACAGACCATAGACACTTGTATGACAATAAATAATATCATTAAGGTTAGAAATGCAAGTTTAAAGGAAAAGTTGTCAATTCTTTTTTGGATAGACGAACAAGGAAAATGTGTTGTATAAAAATTGGACAAAGGAAATACTGTCTATATGCCCCTGAAGCTGCTGGAATTTGAGCTTTTTTTTTTTTTTTTAATGATAAGTAGCTTGATCTCTATGTCTCTTAAGGTTACAATTACCTCCCTACAAACTGCAGGTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATATCCTCAAAGTTGAAGTTCTAGGAGAACAGCTGAGCAGACGGAGGAAGTCATTGGCTGGGTTACCTCCAACGCTAGACAGGATTCTAGCTAATGTTCATGAACGATTAACTTTTCGTGCTCGCACCTATATCCGTGATGAGGTAACATCCCAAGTATTGCTCGGACATTTTATTTAAATGCTGTTTGGCGACTTATCTGTTACTCGGACATGAGATGATATTATCACTTAATCAGCACCCTCGTGGATGAATGAGTAGTGCCAAAATTAGTTACTGGATAAATTAGGCATTCGTTTCCTGTTGCATTGATTTTGGTTAAATTAGGCCTCATGGTATATACCGTATACTATTGCTCATAGCTTAGCGTTTTCTCTTTATTGTTCTCTTAGCTGCACTATCTTCCATTGTTGTGATACGTAGTACCTTCAAACAAAATCGCCCATCAGTGGAAGTGAGTAATTCTCCATTGGAGTTTGAAGCTTTTATATTTTCCATTCTTTCTTATGATCAGGTTATCATGATAGCTTTCTCG</genome_strand>
        <mrna_strand>CGTTGCAATGTTGTACCATCCATGCTTTTCTTTGGTTATTTGTGAAGTTTACTATGTGGACATGTCTAGAGTCACAGGTTTCTTCTAGGGATATGACTTCTTTTATCAAGATTAAGTTCTATTGAGTTAAGCTTGTAAATCTATGCATAAGAGCACAAATAACCTTTGTGTTTCTCCTCTGCATCACTGAAGATATGTAGAGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAG.....................................................................................................................................................................TCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTTAGAAGCACTTCTTCTCAG.................................................................................GTTCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAG........................................................................................................................................................................CTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTG..............................................................................................................ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATATCCTCAAAGTTGAAGTTCTAGGAGAACAGCTGAGCAGACGGAAGAAGTCATTGGCTGGGTTACCTCCAACGCTAGACAGGATTCTAGCTAATGTTCATGAACGATTAACTTTTCGTGCTCGCACCTATATCCGTGATGAG..................................................................................................................................................................................................................................................................................................................................................................................GTTATCATGATAGCTTTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570487" ref_strand="+" ref_description="SGN-U570487 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|22654989|gb|AAM98086.1| (e_value=1e-90) At1g73430/T9L24_16 [Arabidopsis thaliana]; (*ATH) AT1G73430.1 (e_value=9e-93)  Symbol: None | sec34-like family protein, contains Pfam PF04136: Sec34-like family profile; similar to Conserved oligomeric Golgi complex component 3 (Vesicle docking protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) (Homo sapiens) | chr1:27607316-27... ; (*SWP) sp|Q96JB2|COG3_HUMAN (e_value=5e-28) Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3; ">
      <seq>gacggcgacggcgacggcnacggcaacaaggcccggcgttccaaagtcggcagctatttccaaaggctacaattttgcttctacttgggaacagaatgctccgttaacagagcaacaacaagcagccattcaagcactttcccatgcagttgctgagagaccttttccgtccaatttggatcaagtttctggacacgataacagtttctctgtctcaacaaaactcaattctatggaggattcaggggccattgaagcagtccttgtgaatacaaatcagttctacaagtggtttgcagatcttgaagcagccatgaaatcagagactgaagaaaaatatcagcattatgtcaacaccttaacagagcagattcagacctgcgatagtatacttcaccaggtggatgaaacacttgacttattcaatgagctgcagttgcagcaccaaacagtggcaacaaagactagaacccttcatgatgcgtgtgatagactgcttttggagaagcagaaattaattgagtttgcagaatcacttcacaaaaagctcaattactttgatgaattggagaatgttgcaaccactttttattctcctagcatgagtgttggtagtacaaattttctaccattgcttaaaaganttgatgaangcatatcanatgttgagagtaacccacanatgcagagtgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="-" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="80191" stop="70484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79875" g_stop="79809" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="94" r_length="67" r_score="0.866"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79808" i_stop="74679" i_length="5130">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74678" g_stop="74595" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="178" r_length="84" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74594" i_stop="74511" i_length="84">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74510" g_stop="74409" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="280" r_length="102" r_score="0.892"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74408" i_stop="72803" i_length="1606">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72802" g_stop="72758" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="325" r_length="45" r_score="0.889"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72757" i_stop="72641" i_length="117">
            <donor d_prob="0.959" d_score="0.89"/>
            <acceptor a_prob="0.847" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72640" g_stop="72566" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="400" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72565" i_stop="72448" i_length="118">
            <donor d_prob="0.914" d_score="0.96"/>
            <acceptor a_prob="0.917" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72447" g_stop="72352" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="496" r_length="96" r_score="0.917"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="72351" i_stop="71824" i_length="528">
            <donor d_prob="0.832" d_score="0.92"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71823" g_stop="71746" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="574" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71745" i_stop="70883" i_length="863">
            <donor d_prob="0.920" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70882" g_stop="70802" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="655" r_length="81" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="-" ref_id="SGN-U570487" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79875" e_stop="79809"/>
          <exon e_start="74678" e_stop="74595"/>
          <exon e_start="74510" e_stop="74409"/>
          <exon e_start="72802" e_stop="72758"/>
          <exon e_start="72640" e_stop="72566"/>
          <exon e_start="72447" e_stop="72352"/>
          <exon e_start="71823" e_stop="71746"/>
          <exon e_start="70882" e_stop="70802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAGGTTCACTCTCTATTTTCTACATTGTTCAGATTTTCTCCAGATTTACTAGATTTGTTTGAACGCATAACCAAAATTATGTAGATATCTGATTCTATGACAAATTTTGATGACCGGATTTTTATCATATGCACTGATCCTGTTGAAATAATGAATAGTAAAGCGGTGATTGGAAAAGGGGATCAAATTACATTGGATTATTGCTTGATTTCTTGGATTCCTTACAGCTTAAGAAAATCCAGCAAATCTTTTAACTATATCTTAGTAATATCTTGGTACTAAGTTTCTCTAATAAATTTTATCACTTACCCAAAAAAGGTGAAAAAAAGGAGGATCAGAATTGTTTCTTTGTGCGATAAAGTTCTCAGTTGATTTTAACATGTGTTTGTCGTCTCATTTCAACGGCAAGGTTTAGCTGCTGGTGATTGTGTCGCATATTCTCCGTTGAACTATCTTTTGAAGTTTTATTTTCATTGTAATGTGACACTGCTTCTCTTTTTCCTCGTATAACCACCGGCTAACTAGCTGCTGAAACTTTTACTTTTAGCTTATTCTTGCAATAGCTATTGGAAAATCACCTTTGAGAGAAATAATGGAGAAAATATTATTGAATTGCTCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGGAAATCTTTTCTAACTAGAATTCCTATTCTAAGTAAGAAATACTTATTTCTATTCTAACACTCCCCCTCAAGCTGGTGCATACAAATTATATGCACCTAGCTTGTTACAGATGTAATTAATACGAGGACATGTGAGAGACTTAGTGAACATATCCGCAAGCTGATCATTTGACTTCACAAATTTTGTAACAATATCTCCTGAGAGTATCTTTTCTCTGAGAAAGTGACAGTCAATCTCAATGTGCTTAGTCCTTTCATGAAACACTGGATTTGATGCGATATGAAGAGCCGCTTGATTATCACACAAAAGTTCCATCTGATCAATTTTGCCGAATTTTAGTTCTCCCAGTAATTATTTGTGCCAAACTAACTCACAAGTTGCTGTCGCTATTGCTCGATATTCTGATTCTGCACTAGATTGAGAAGCCACATTTTGTTTCTTACTCTTCCACGACACCAAATTACCTCCAACTAAAACACAATATCCGGATGTCAAACGTCTGTTAGAGGGTAATCCTGCCCAATCAGTGTCTGTATATCCAATAATATGCTCATGACCTTGATCCTCAAAGAGTAGTCCTTTGCCGGGGGCTGACTTTATATATCGAAGAATATGAACAACTGCTTCCCAATGACTATCACAAGGGGAAGTCATAAACTGACTTACAACACTCACGGGAAAAGAGATGCCTGGTCTAGTCACTATGAGATAATTCAACTTTCCAACAAGTCGTCTATACCTTTAAGGATTACTAAGTGGCTCCACCTGTCTCGGAAGAAGTTTAACATTCGGATCCATCGGAGTGTCAATAGGTGTACATCCCATCATTCCTGTCTCCTCAAGAATGTCTAAGGCATACTTGTGTTTAGAGATAACAATGCCTGATCTAGATTGAGCAACCTCAATACCTAGAAAATACTTCAATCTACCAAGGTCTTTTGTCTGAAAGTGCTTAAAAAGATGTTGCTTTATATCGGTGATATAGTCTTGATCATTATCAGTGGTAACAATATCATCAACATAAACAACCAAATAGATACATCGACCTGGTGCAGAATGTCGATAAAACACAAAGTGATTTGATCCATTACGAGTCATGCCAAACTTCTGAATTACTGTGCTAAACTTCCCAAACCAAGCTCGAGGAGACTGTTTCAGACCATAGAGTGACCTACGCAATCGACATACAAGGCTACTAGACTCCCCCTGAGCAACAAAACTAGGTGGTTGCTCCATATAGACTTCTTCCTCAAGATCACTAGCAGAAAAGCATTCTTTATGTCCAACTGATAAAGAGGACAATGACGAACAACAACCATAGATTAGAAAAAGACGAACATATGCTATTTTAGCCACAGGAGCAAAAGTGTCACTATAATCTAGCCCAAATATCTGAGTATACCCTTTGGCGACAAGGAGAACCTTAAGTCGATCAACCTAACCATCTAGACCAATTTTGACTGCATAAACCCAATGACAACCAACAGTAGATTTACATGCAGGAAGGGAGACAAGCTCCCAAGTATCACTCTTATGTAAAGCAGACATCTCATCAACCATAGCCTGCCTCCATCTAGAATGAGAAAGTGCTTCACCTATAGTCTTAGGAATGGAAATAGAGGACAATGACGACACAAAGGCATAATGGGTGATGATATATGATGATAACTTAAGAAGGTAAATGCGGGTTAGTATTTCGAGTAGATTGTATACCTTTTTGAAGTGCAAGCGGTGGGCTAGGTAGAGGCAAGTCCGCAGTAGGAGCAGGGTCTGGCGCATGACATGAATCATCTGGGACTAGGGTTGGATGTGGACGACGATGATAAGTTAGTAGTGGTGGCACTGCAACTGGAGATGTAGACGTAACTGTAGATCCCTCAAAGGTTGGCACAGGTAAAATTTGAGGTATGGGTAAGACCATAGAGACATCACTACGATCAGAAGATGTATAATAAGGCTGAGACTCAAAAAATGTAACATCAACAGACATAAGGTATCGGTGAAGAACATGTGAATAACAACGATATCCTTTTTGAACTCTAGAGTAACCAAGAAAGACACATTTGAGGCACGAGGAGCTAATTTATCTTTTCCTGGGGCTAAATTATGAAGAAAGCATGTACTCCAAACGACACGAGAGGGGATAGGATAAAGATGTGACTGAGGAAACAATATGGAATATGGAACATGATTTTGAATATAAGAAGAGGGCATTCTGTTAATTTAATAATAAGCAGAAAGGACTGCATCGCCCCAAAAATGCATCGAAACATGGCAATTCTATGAGGAGAGTGCGAGCAGTCTCTATGAGATATGCCTATTCTTTCTTTCTGCGACACCATTTTGTTGAGGAGTGTATGGACAAGATGTTTGGTGAATGATTCCGTGGTGAGACATAAATTCCTGAAATTGGGGTGATAAGTATACTAAGGCATTATCACTACGGAATGTACGAATAGAAACACCAAACTGATTTTGTATTTCAGCAAAGAAAACTTTGAAAATAGAAAATAACTCAGAACGATCTTTCATTAAGAAAACCCAAGTGCATCTCGAATAATCATCAATGAAACTAACAAAATAACGAAATCCTAAGGGGGAACTGACTCTACTAGTACCCCAAATATTAGAATGAACTAATGAAAAAATAGACTCTGAACGACCCTCAGTACTACGAGAAAATGTAGCACGAGTGTGTTTCCCAAATTGACACGACTCACAATCTAATGTGGATAAACCAGACAAACTAGGTACCATCTTTTTCAATTTGGATAGACTTGAGTGTCCCAAACGTTTGTGAATTAGATCTGAGGAATCTGTAACGGAGCATGCTATTAAAGAATTAGAAGAGGTAAGATAGTAAAGGCCTTGTGATTCATATCTTGTTCCAATAGTCTGTCCTGTACTGCGGTCCTGCATGAGAAAGAAATGATCAAAAAAATTATGCTACAATGTAGGGCTTTCGTCAAACGACTAACCGATGCTAGATTAAAAGGAGAACCAGGGACATAAAGAACAGAGTCAAGAGTGACAGAAGATATGGGTTTGGCTTTTCCAACCCCTTTTGGTTTTGTTTGTATCCCATTGGCTAATGTAATAGATGAAAGAGATTATGAATAGATTATATCAGATAAAAGTGATTTATTACCAGTGATATGATCAGAAGCCCCCGATTCTATGACCCATGATCCAATAGTGTTAGACTGTGATATACTAGTACAAAATATTACCCGCAACAGAAACATTAGGTTTTGCAATCGAAACTACTTGTAGAGACGTTTGTTTATTTGCACAATACGGAAAAAACTCTATATATTCCTTTAGAACAACAGGATCATAACTGGGTGATCCACCATGCAAAATAAAACATATGTCACGAGTGTGTCCAGGTTTATGACATGACTACACTTAGATCGAGATTTTTCAAAAAATTCTCTCCCCCGTCTATTCTCCATGGATTTGTATGTACGCTTGGAACTGCCAGAAGCTGCTACACAAGTCTGAAAATATTGGAAGCTGCCGAAATCTGCCCGCAGTGGCCTGAAAAATTCTGATATTGCCGGAATTTTGCTGGGAACTGCCCAAAAAAAATCACCGGAACCCTAATTTCGGTGATCGGATCTAGAGATAACTGTATGGTTCTTACCGAAAACACTGGACGACCCTAACAGAAGAGAGAAACTCGAAAAAAAGAAGAGAGACCCGAGCAGCACTCACGCGCCGGAAGCTGCCCAAAAATCACCGCAACCCTAATTTCGGTGATCGAATCTAAATAAAAATGGTCAAAAACAGTATAGTCTGGGTCGGAATGGCTGGACGACCCCACCTGTCGAAAAAAATCTCAAAGACTATGGACGGAAAAGTCCTCACGCGCCGGCGAGTGAGCCAGATCTCGCCGGAATCTGCCACCTTCGATCGGCGCGTGAGGGCGCGTGCGGTGCTGTTTTCTGGTGGTTCTTGCTGGGGTTTGGTCGCGGGAGGTTTCCTAGCCTCGTGTTGGTGTTGGTTTTCGCACAACACCCACTAAATAAAAAATGATAAAATCAGTCCCAAACGTCACCGGAAATTGAATTGTTTGTTTCTCACCAATGCCCTGATACCATGAGAGAAATAATGGAGAAAATATTATTGAATTGCGCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGAAAACCTTTTCCAACTAGAATTCCTATTGTAATTCCTATTCTAAGTAAGAAATATTTATTCCTATTCTAACAACCTCTATCCTGGATTTGATCTTCTATTTTGTGTTTGTGGCCCTCATCATGTCAAATTATATTGTTTGTAGTAAAAGAGAAGAATTGTTTGTACGTACTACATGTGTCTATTTCATGTCTATTGAAAGTTATTCCTTTTGATTAATTAAATCAACATTAGTGGCTATCTTAATGTTTATATTCTACAACGACTTGAGCTAGTATTTTTCTTACAGAATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTGGTGAGTTTTTCCTTCTTGGTTGGTTTCAGAATATATCTATCTCTAACTCAATTACCTGAAATATGTTTTTATTTCAATTTCCAGGACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAGGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAGGTGAGTTACTTTTGAAAGACTGGAGTGGAGTTTCCTTCCAGTTGAGGAGTAGTCTCCATTCTCTTATTTTCTTTGGTGCACACAGGGGGTACCTGGTGTATAGATAATTAGTTGGAGTTCGTAGACAATCATATCTTGTTGTAGATGCTTTGCCTTTTGGTATACGCCTTGTATATGGCCAGTTTGCGAATATGAATGAAAAAATATTTACCTGATTAAAAAAAACCCAATTTTTAGTTGGCATGTCCTTTATCTTTTACATTTCCCGGTTGCAGATCTTAGTATTCCATATTTCAAATAAGGGATCGTGAATGATATTCCCTTATAAAAAAGGTTGCATGATCAACTAAATTTTGGGCAAGGAATCAAAACAAATAAAATCTTGCAACCAATGCTAAATGATAGACTTATATTTCTACAAGACTAGAAGTTGTAGTGTGTTATACTCAAAGGCTCATCTGCCACACATAACTGCTAAACCAGTGAAATCTTCTTTTTGATAAGATAACTGCTAAAATCGATGAGTTGAGCAGAAGGCCTGATAATTGCTTGTTACAAAGCCCCATCCATTGTTTTGGCTTACTAGATAATATGCGTCTCATTTGTTCCGGATGATTGTCATTAACTAGAGAGGGTAAACCTTATGCCGGGCAAAGGATGACTAGAACTTACATTTAGTGAGAAATGACCCTGATACTCAATGTCTTCTGGGGTAGAAATACCTAAATTGCATGTGATGGGTCAAGGGATGATGACCATAGTGGCTGTTTATGGCCTTGATCCTGCCTATTTTAGTGGAGCAGGTTTTGTGTCTATATATCAGAAAGACATGCAAAAGAAATTTCTTCTAGAACTCTCCTCCATATTTGAACTTTGGTAGCCCTAGAAGTTATTTTCTTTTTCTCCTTTTGTTTTATCCTAATGTCTTTTGATAAGGAGATTTTCGGATCATTATGTTATTATATACCTCATCACTAAAAAAGAGTTCTCTGTGAAAGACAACCAACAATTTATACACACAATAAACTTGTAAGTGCACAAAAAATTAACAATAGGAGGTTATTTCTCAACTGTACGAAATCATAATCCACCCCTTTCAAAAGACCTCCTACTTCTCTCCTTCTAAAGAACCACTGGAGCTAACGGAGCTACATCCCATTTCACTTCTTCTCCTCTTTATTGTAAAGCCCCCCACTCCCCCAGCATTTGCATGATTCTTAAATTTCAAAAATGTTAAAAGTAAGTGGTCACAACTGCCAGGCTATTAGGCAGTGTAGTTGGAGTTAATTAACATCCTCAACCCTCATTTCACACATGTAACACTTTTTGCATATATCAGGCAGCTTTCTTGAAGGAATTGCTCTATAAGTACTGCTTCATATGTTGCTGTCCAGCAAAAGCAAGCCACTTAATAAGGAGCTTCAGTTTTCCAAATTTGTTTCCATGTCAATCTTTGTGTTGCCGCCTTGTATATGCTTGAATACTGCATATGCTTAATTGTCTATGTAAATGATGATATTAATGGCATCTTAATTGACCTTTCCCCTTATGCTGCTTGAACTTGATATGAGTTTCCTCTTCCCCTTTGTTTATTTTGTTGATACAGTTTTATAAGTGGTTCGCGGATCTTGAAGCAGCCATGAAATTAGAGGTTGGTCTTTAGCTTGTTTATATGTCTTCCGTTTCTTCCAAAAGTTGTGAGTCATACGTTTCATCTTTTTCACTTGCGGACTAAAAGATATTACATATGCTTTCTTTCTATATATAGTCTGAAGAAAAATATCAGCATTATGCCAGCACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAGGTATTCTGAGAAGAAAAATAATGCTCTTATACTCTTCTCTTAAGCCTTTTGTTGTTGCTGTTCATCTAACTATGCTCGAGTCGACATGCCCTTGCCCTTAAAATTGGCTCTCTTGCAGGTGGATGAAACACTTGACTTGTTCAATGAGTTGCAATTGCAGCATCAAGCAGTGGCAACAAAGACAAGAACTCTTCATGATGCGTGCGATAGACTGGTGTGTCAACCCATTTCTCTTAGCATCTGTGGTTACTTAGCTGTAGATTGTACTTTTCTCTTTCATTCTGTTCAAAATTCTGAGGAGCAGAGGAGCAATTAATTGTATGATAAGAAGATAGGCTTGTAACTATGTAGTTCAATTTCTTAATCAACATTGTTTTGCTTACTCTATGATGTTGAAAGTCTTCATTGGCAATCTACTATATTGATGGATTAAAATCTATGATATCTTTTATAGTTGCCAAACATCTTCAATTGCCACCTAGTACCTTGTAAATGCATTTCTTCATTTTGCATTTCTAGTTTTTTCTTTTATCTGAAGTTGCTGTTTGTCTTAAAGCATTATCTAGTTACCATTCATGTCAATGTTGTGTATTCTAATGTCCAGTGAGTGGCATTTGAAATTCGGAGTTCCCTATCAGTGTCTAATATTAATGGACATGTGATGTACAGGTAAAGAGGCAATAATTAACTACAAGAAGCAGCATTGAATAATATTCTTGTGTAACTTCTTTTTTGTTTGAAGCTTTTGGAGAAGCAGAAAATAATTGAGTTTGCAGAATCACTTCACAATAAGCTCAATTACTTTGATGAATTGGAGAATGTAAGGTCCGGCTGCCATTTCTGTTGATAATATTCCATTGTTATTCAATGCCTTTTGCACTATTTCCACAGTAGTCTATCTATGCCTATCTGAATTAGGTATGGTTCTGCATCAACTTTATTTTGAGTGAAGAGAATTGATGCTATCTGTATTTTTTATGCTTTGATACTCGGTGAGGAAATATACCTAACTGAGAGTTTGAACTATGGAAAACAGCTTTAAGAGATTAGAGCTTTCTGCCTCAAGAGATTTCATGTTTTTTAATTAAATTTTTTCCACACCCATACATCGGAGGGCAGAGCTTTATCCTTTGTAAATAAAGCTTTGGTTCTAGATTGTTTTCTTCCTCATGTTACAAATGAGTCACCCAAAGCTATTCTGTCTTGGCTTTTCCAATCTAGTTCTTTTGGATTATTTTGATGTTCTTGCTTAGCGAGTTATTTATTTAAGATGATTTTTTTAATCTCGTCTTTTGGTCAACTCTTCTTTCTCCTATTTATGTGCTTGGTGGTTTCTAAAGGAAAACTTTTTCACTTGTGAGATTGAGAATGAGAGTTCCTGTTTTAATTTTTTTTTTTTGGAACTGAGAGTTCCTTTTTTTAAATTCCTTAAAGAGGAATAGCTTTTCACTCTCTACTGTACATATTCTTGATTTAATCATGACCATTAGACTAAAATTTTCTAATTCCTTTTTGTTTAATTACATCTAATTGGTGTATCAACTTGATTTGTCTTGTGCTAAATTTTCTCTTCAAGTCCTGCTCTTCTCCTACTTGAACTTCTCCAAATGTCAAAGTACCCAGTTTTATGTTTTTTTTTTTTTGATTTGATTCCTCATGCTTGTCTTGCACTCTTGTTTGCAGGTTGCTACCACTTTTTATTCTCCTAGCATGAGCGTTGGTAGTACAAATTTTCTTCCATTGCTAAAGAGACTTGATGAGTGC</genome_strand>
        <mrna_strand>AAGGCCCGGCGTTCCAAAGTCGGCAGCTATTTCCAAAGGCTACAATTTTGCTTCTACTTGGGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTCCGTTAACAGAGCAACAACAAGCAGCCATTCAAGCACTTTCCCATGCAGTTGCTGAGAGACCTTTTCCGTCCAATTTG....................................................................................GATCAAGTTTCTGGACACGATAACAGTTTCTCTGTCTCAACAAAACTCAATTCTATGGAGGATTCAGGGGCCATTGAAGCAGTCCTTGTGAATACAAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACAAGTGGTTTGCAGATCTTGAAGCAGCCATGAAATCAGAG.....................................................................................................................ACTGAAGAAAAATATCAGCATTATGTCAACACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG......................................................................................................................GTGGATGAAACACTTGACTTATTCAATGAGCTGCAGTTGCAGCACCAAACAGTGGCAACAAAGACTAGAACCCTTCATGATGCGTGTGATAGACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGAGAAGCAGAAATTAATTGAGTTTGCAGAATCACTTCACAAAAAGCTCAATTACTTTGATGAATTGGAGAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAACCACTTTTTATTCTCCTAGCATGAGTGTTGGTAGTACAAATTTTCTACCATTGCTTAAAAGANTTGATGAANGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603220" ref_strand="+" ref_description="SGN-U603220 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gtgtaaataaagctttggttctagattgttttcttcctcatgggacaaatgagtcacccaaagctattctgtcttggcttttccaatctagttcttttggattatcttgatgttcttgcttaacgagttattcatttaaaatgatggtggtagtctcagcctttggtcaactcttctttctcctatttatgtgcttggtggtttctaaaggaaaactttttcacttgtgagattgagaatgagagttcctgttttaattttttttttttggaactgagagttcctttttttaaattccttaaagaggaatagcttttcactctctactgtacatattcttgatttaatcatgaccattagactaaaattttctaattcctttttgtttaattacatctaattggtgtatcaacttgatttgtcttgtgctaaattttctcttcaaggcctgctcttctcctacttgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="-" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="71734" stop="70665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71435" g_stop="70965" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="-" ref_id="SGN-U603220" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71435" e_stop="70965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAAATAAAGCTTTGGTTCTAGATTGTTTTCTTCCTCATGTTACAAATGAGTCACCCAAAGCTATTCTGTCTTGGCTTTTCCAATCTAGTTCTTTTGGATTATTTTGATGTTCTTGCTTAGCGAGTTATTTATTTAAGATGATTTTTTTAATCTCGTCTTTTGGTCAACTCTTCTTTCTCCTATTTATGTGCTTGGTGGTTTCTAAAGGAAAACTTTTTCACTTGTGAGATTGAGAATGAGAGTTCCTGTTTTAATTTTTTTTTTTTGGAACTGAGAGTTCCTTTTTTTAAATTCCTTAAAGAGGAATAGCTTTTCACTCTCTACTGTACATATTCTTGATTTAATCATGACCATTAGACTAAAATTTTCTAATTCCTTTTTGTTTAATTACATCTAATTGGTGTATCAACTTGATTTGTCTTGTGCTAAATTTTCTCTTCAAGTCCTGCTCTTCTCCTACTTGAACTT</genome_strand>
        <mrna_strand>GTGTAAATAAAGCTTTGGTTCTAGATTGTTTTCTTCCTCATGGGACAAATGAGTCACCCAAAGCTATTCTGTCTTGGCTTTTCCAATCTAGTTCTTTTGGATTATCTTGATGTTCTTGCTTAACGAGTTATTCATTTAAAATGATGGTGGTAGTCTCAGCCTTTGGTCAACTCTTCTTTCTCCTATTTATGTGCTTGGTGGTTTCTAAAGGAAAACTTTTTCACTTGTGAGATTGAGAATGAGAGTTCCTGTTTTAATTTTTTTTTTTTGGAACTGAGAGTTCCTTTTTTTAAATTCCTTAAAGAGGAATAGCTTTTCACTCTCTACTGTACATATTCTTGATTTAATCATGACCATTAGACTAAAATTTTCTAATTCCTTTTTGTTTAATTACATCTAATTGGTGTATCAACTTGATTTGTCTTGTGCTAAATTTTCTCTTCAAGGCCTGCTCTTCTCCTACTTGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570486" ref_strand="+" ref_description="SGN-U570486 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|22654989|gb|AAM98086.1| (e_value=9e-61) At1g73430/T9L24_16 [Arabidopsis thaliana]; (*ATH) AT1G73430.1 (e_value=7e-63)  Symbol: None | sec34-like family protein, contains Pfam PF04136: Sec34-like family profile; similar to Conserved oligomeric Golgi complex component 3 (Vesicle docking protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) (Homo sapiens) | chr1:27607316-27... ; ">
      <seq>atttaattttctccagttttggtctatgttgaattttgaagaaaaggaacgtcgttactgtaattttcatatgagcggaaaacccaaagctaagccagaggatcatcccagatctccaacttcatcgttcaaatcaccctttttttcaacttcgaagtcgaaattgcttccattgaagctccaaaatccatatggtgatggctacaatcatctgtagtattgattgttttggtatcagtaattgactagttactacacagtccgtttccccctcatttttcatcaattctgtttcgttttactttttacacgaacagaaacagttgcaaagtagtggaagaagagagtgatgataatactatggcggcaacgacaaggccgggggttctcaagtccgaagctgtttccaaaggctataatttcgcttctacttgggaacagaatgctctgttaacagagcaacaatcagcagccatacaagcactttcccatgcagttgccgagagacctttcccgtccaatttggaccaagtttctggacatgataacagcctctctgtttcaacaaagcttagttctctagaggattcaggggccattgaagcagtcctagtgaatacaaatcagttttataagtggttcgcggatcttgaagcagccatgaaattagagtctgaagaaaaatatcagcattatgccagcaccttaacagagcagattcagacctgcgatagtatacttcaccaggtggatgaaacacttgacttgttcaatgagttgcaattgcagcatcaagcagtggcaacaaagacaagaactcttcatgatgcgtgcgatagactggtgtgtcaacccatttctcttagcatctgtggttacttagctgtaaattgtacttttctctttcattctgttcaaaattctgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="-" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="80549" stop="71967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80249" g_stop="79809" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79808" i_stop="74679" i_length="5130">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74678" g_stop="74595" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="525" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74594" i_stop="74511" i_length="84">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74510" g_stop="74409" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="627" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74408" i_stop="72803" i_length="1606">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72802" g_stop="72758" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="672" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72757" i_stop="72641" i_length="117">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72640" g_stop="72566" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="747" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72565" i_stop="72448" i_length="118">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72447" g_stop="72267" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="928" r_length="181" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="-" ref_id="SGN-U570486" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>928</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80249" e_stop="79809"/>
          <exon e_start="74678" e_stop="74595"/>
          <exon e_start="74510" e_stop="74409"/>
          <exon e_start="72802" e_stop="72758"/>
          <exon e_start="72640" e_stop="72566"/>
          <exon e_start="72447" e_stop="72267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATTTTCTCCAGTTTTGGTCTATGTTGAATTTTGAAGAAAAGGAACGTCGTTACTGTAATTTTCATATGAGCGGAAAACCCAAAGCTAAGCCAGAGGATCATCCCAGATCTCCAACTTCATCGTTCAAATCACCCTTTTTTTCAACTTCGAAGTCGAAATTGCTTCCATTGAAGCTCCAAAATCCATATGGTGATGGCTACAATCATCTGTAGTATTGATTGTTTTGGTATCAGTAATTGACTAGTTACTACACAGTCCGTTTCCCCCTCATTTTTCATCAATTCTGTTTCGTTTTACTTTTTACACGAACAGAAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAGGTTCACTCTCTATTTTCTACATTGTTCAGATTTTCTCCAGATTTACTAGATTTGTTTGAACGCATAACCAAAATTATGTAGATATCTGATTCTATGACAAATTTTGATGACCGGATTTTTATCATATGCACTGATCCTGTTGAAATAATGAATAGTAAAGCGGTGATTGGAAAAGGGGATCAAATTACATTGGATTATTGCTTGATTTCTTGGATTCCTTACAGCTTAAGAAAATCCAGCAAATCTTTTAACTATATCTTAGTAATATCTTGGTACTAAGTTTCTCTAATAAATTTTATCACTTACCCAAAAAAGGTGAAAAAAAGGAGGATCAGAATTGTTTCTTTGTGCGATAAAGTTCTCAGTTGATTTTAACATGTGTTTGTCGTCTCATTTCAACGGCAAGGTTTAGCTGCTGGTGATTGTGTCGCATATTCTCCGTTGAACTATCTTTTGAAGTTTTATTTTCATTGTAATGTGACACTGCTTCTCTTTTTCCTCGTATAACCACCGGCTAACTAGCTGCTGAAACTTTTACTTTTAGCTTATTCTTGCAATAGCTATTGGAAAATCACCTTTGAGAGAAATAATGGAGAAAATATTATTGAATTGCTCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGGAAATCTTTTCTAACTAGAATTCCTATTCTAAGTAAGAAATACTTATTTCTATTCTAACACTCCCCCTCAAGCTGGTGCATACAAATTATATGCACCTAGCTTGTTACAGATGTAATTAATACGAGGACATGTGAGAGACTTAGTGAACATATCCGCAAGCTGATCATTTGACTTCACAAATTTTGTAACAATATCTCCTGAGAGTATCTTTTCTCTGAGAAAGTGACAGTCAATCTCAATGTGCTTAGTCCTTTCATGAAACACTGGATTTGATGCGATATGAAGAGCCGCTTGATTATCACACAAAAGTTCCATCTGATCAATTTTGCCGAATTTTAGTTCTCCCAGTAATTATTTGTGCCAAACTAACTCACAAGTTGCTGTCGCTATTGCTCGATATTCTGATTCTGCACTAGATTGAGAAGCCACATTTTGTTTCTTACTCTTCCACGACACCAAATTACCTCCAACTAAAACACAATATCCGGATGTCAAACGTCTGTTAGAGGGTAATCCTGCCCAATCAGTGTCTGTATATCCAATAATATGCTCATGACCTTGATCCTCAAAGAGTAGTCCTTTGCCGGGGGCTGACTTTATATATCGAAGAATATGAACAACTGCTTCCCAATGACTATCACAAGGGGAAGTCATAAACTGACTTACAACACTCACGGGAAAAGAGATGCCTGGTCTAGTCACTATGAGATAATTCAACTTTCCAACAAGTCGTCTATACCTTTAAGGATTACTAAGTGGCTCCACCTGTCTCGGAAGAAGTTTAACATTCGGATCCATCGGAGTGTCAATAGGTGTACATCCCATCATTCCTGTCTCCTCAAGAATGTCTAAGGCATACTTGTGTTTAGAGATAACAATGCCTGATCTAGATTGAGCAACCTCAATACCTAGAAAATACTTCAATCTACCAAGGTCTTTTGTCTGAAAGTGCTTAAAAAGATGTTGCTTTATATCGGTGATATAGTCTTGATCATTATCAGTGGTAACAATATCATCAACATAAACAACCAAATAGATACATCGACCTGGTGCAGAATGTCGATAAAACACAAAGTGATTTGATCCATTACGAGTCATGCCAAACTTCTGAATTACTGTGCTAAACTTCCCAAACCAAGCTCGAGGAGACTGTTTCAGACCATAGAGTGACCTACGCAATCGACATACAAGGCTACTAGACTCCCCCTGAGCAACAAAACTAGGTGGTTGCTCCATATAGACTTCTTCCTCAAGATCACTAGCAGAAAAGCATTCTTTATGTCCAACTGATAAAGAGGACAATGACGAACAACAACCATAGATTAGAAAAAGACGAACATATGCTATTTTAGCCACAGGAGCAAAAGTGTCACTATAATCTAGCCCAAATATCTGAGTATACCCTTTGGCGACAAGGAGAACCTTAAGTCGATCAACCTAACCATCTAGACCAATTTTGACTGCATAAACCCAATGACAACCAACAGTAGATTTACATGCAGGAAGGGAGACAAGCTCCCAAGTATCACTCTTATGTAAAGCAGACATCTCATCAACCATAGCCTGCCTCCATCTAGAATGAGAAAGTGCTTCACCTATAGTCTTAGGAATGGAAATAGAGGACAATGACGACACAAAGGCATAATGGGTGATGATATATGATGATAACTTAAGAAGGTAAATGCGGGTTAGTATTTCGAGTAGATTGTATACCTTTTTGAAGTGCAAGCGGTGGGCTAGGTAGAGGCAAGTCCGCAGTAGGAGCAGGGTCTGGCGCATGACATGAATCATCTGGGACTAGGGTTGGATGTGGACGACGATGATAAGTTAGTAGTGGTGGCACTGCAACTGGAGATGTAGACGTAACTGTAGATCCCTCAAAGGTTGGCACAGGTAAAATTTGAGGTATGGGTAAGACCATAGAGACATCACTACGATCAGAAGATGTATAATAAGGCTGAGACTCAAAAAATGTAACATCAACAGACATAAGGTATCGGTGAAGAACATGTGAATAACAACGATATCCTTTTTGAACTCTAGAGTAACCAAGAAAGACACATTTGAGGCACGAGGAGCTAATTTATCTTTTCCTGGGGCTAAATTATGAAGAAAGCATGTACTCCAAACGACACGAGAGGGGATAGGATAAAGATGTGACTGAGGAAACAATATGGAATATGGAACATGATTTTGAATATAAGAAGAGGGCATTCTGTTAATTTAATAATAAGCAGAAAGGACTGCATCGCCCCAAAAATGCATCGAAACATGGCAATTCTATGAGGAGAGTGCGAGCAGTCTCTATGAGATATGCCTATTCTTTCTTTCTGCGACACCATTTTGTTGAGGAGTGTATGGACAAGATGTTTGGTGAATGATTCCGTGGTGAGACATAAATTCCTGAAATTGGGGTGATAAGTATACTAAGGCATTATCACTACGGAATGTACGAATAGAAACACCAAACTGATTTTGTATTTCAGCAAAGAAAACTTTGAAAATAGAAAATAACTCAGAACGATCTTTCATTAAGAAAACCCAAGTGCATCTCGAATAATCATCAATGAAACTAACAAAATAACGAAATCCTAAGGGGGAACTGACTCTACTAGTACCCCAAATATTAGAATGAACTAATGAAAAAATAGACTCTGAACGACCCTCAGTACTACGAGAAAATGTAGCACGAGTGTGTTTCCCAAATTGACACGACTCACAATCTAATGTGGATAAACCAGACAAACTAGGTACCATCTTTTTCAATTTGGATAGACTTGAGTGTCCCAAACGTTTGTGAATTAGATCTGAGGAATCTGTAACGGAGCATGCTATTAAAGAATTAGAAGAGGTAAGATAGTAAAGGCCTTGTGATTCATATCTTGTTCCAATAGTCTGTCCTGTACTGCGGTCCTGCATGAGAAAGAAATGATCAAAAAAATTATGCTACAATGTAGGGCTTTCGTCAAACGACTAACCGATGCTAGATTAAAAGGAGAACCAGGGACATAAAGAACAGAGTCAAGAGTGACAGAAGATATGGGTTTGGCTTTTCCAACCCCTTTTGGTTTTGTTTGTATCCCATTGGCTAATGTAATAGATGAAAGAGATTATGAATAGATTATATCAGATAAAAGTGATTTATTACCAGTGATATGATCAGAAGCCCCCGATTCTATGACCCATGATCCAATAGTGTTAGACTGTGATATACTAGTACAAAATATTACCCGCAACAGAAACATTAGGTTTTGCAATCGAAACTACTTGTAGAGACGTTTGTTTATTTGCACAATACGGAAAAAACTCTATATATTCCTTTAGAACAACAGGATCATAACTGGGTGATCCACCATGCAAAATAAAACATATGTCACGAGTGTGTCCAGGTTTATGACATGACTACACTTAGATCGAGATTTTTCAAAAAATTCTCTCCCCCGTCTATTCTCCATGGATTTGTATGTACGCTTGGAACTGCCAGAAGCTGCTACACAAGTCTGAAAATATTGGAAGCTGCCGAAATCTGCCCGCAGTGGCCTGAAAAATTCTGATATTGCCGGAATTTTGCTGGGAACTGCCCAAAAAAAATCACCGGAACCCTAATTTCGGTGATCGGATCTAGAGATAACTGTATGGTTCTTACCGAAAACACTGGACGACCCTAACAGAAGAGAGAAACTCGAAAAAAAGAAGAGAGACCCGAGCAGCACTCACGCGCCGGAAGCTGCCCAAAAATCACCGCAACCCTAATTTCGGTGATCGAATCTAAATAAAAATGGTCAAAAACAGTATAGTCTGGGTCGGAATGGCTGGACGACCCCACCTGTCGAAAAAAATCTCAAAGACTATGGACGGAAAAGTCCTCACGCGCCGGCGAGTGAGCCAGATCTCGCCGGAATCTGCCACCTTCGATCGGCGCGTGAGGGCGCGTGCGGTGCTGTTTTCTGGTGGTTCTTGCTGGGGTTTGGTCGCGGGAGGTTTCCTAGCCTCGTGTTGGTGTTGGTTTTCGCACAACACCCACTAAATAAAAAATGATAAAATCAGTCCCAAACGTCACCGGAAATTGAATTGTTTGTTTCTCACCAATGCCCTGATACCATGAGAGAAATAATGGAGAAAATATTATTGAATTGCGCATCTAAATTGTTACATGAAGACCCTATTTATAGACACTACATTGAAAACCTTTTCCAACTAGAATTCCTATTGTAATTCCTATTCTAAGTAAGAAATATTTATTCCTATTCTAACAACCTCTATCCTGGATTTGATCTTCTATTTTGTGTTTGTGGCCCTCATCATGTCAAATTATATTGTTTGTAGTAAAAGAGAAGAATTGTTTGTACGTACTACATGTGTCTATTTCATGTCTATTGAAAGTTATTCCTTTTGATTAATTAAATCAACATTAGTGGCTATCTTAATGTTTATATTCTACAACGACTTGAGCTAGTATTTTTCTTACAGAATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTGGTGAGTTTTTCCTTCTTGGTTGGTTTCAGAATATATCTATCTCTAACTCAATTACCTGAAATATGTTTTTATTTCAATTTCCAGGACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAGGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAGGTGAGTTACTTTTGAAAGACTGGAGTGGAGTTTCCTTCCAGTTGAGGAGTAGTCTCCATTCTCTTATTTTCTTTGGTGCACACAGGGGGTACCTGGTGTATAGATAATTAGTTGGAGTTCGTAGACAATCATATCTTGTTGTAGATGCTTTGCCTTTTGGTATACGCCTTGTATATGGCCAGTTTGCGAATATGAATGAAAAAATATTTACCTGATTAAAAAAAACCCAATTTTTAGTTGGCATGTCCTTTATCTTTTACATTTCCCGGTTGCAGATCTTAGTATTCCATATTTCAAATAAGGGATCGTGAATGATATTCCCTTATAAAAAAGGTTGCATGATCAACTAAATTTTGGGCAAGGAATCAAAACAAATAAAATCTTGCAACCAATGCTAAATGATAGACTTATATTTCTACAAGACTAGAAGTTGTAGTGTGTTATACTCAAAGGCTCATCTGCCACACATAACTGCTAAACCAGTGAAATCTTCTTTTTGATAAGATAACTGCTAAAATCGATGAGTTGAGCAGAAGGCCTGATAATTGCTTGTTACAAAGCCCCATCCATTGTTTTGGCTTACTAGATAATATGCGTCTCATTTGTTCCGGATGATTGTCATTAACTAGAGAGGGTAAACCTTATGCCGGGCAAAGGATGACTAGAACTTACATTTAGTGAGAAATGACCCTGATACTCAATGTCTTCTGGGGTAGAAATACCTAAATTGCATGTGATGGGTCAAGGGATGATGACCATAGTGGCTGTTTATGGCCTTGATCCTGCCTATTTTAGTGGAGCAGGTTTTGTGTCTATATATCAGAAAGACATGCAAAAGAAATTTCTTCTAGAACTCTCCTCCATATTTGAACTTTGGTAGCCCTAGAAGTTATTTTCTTTTTCTCCTTTTGTTTTATCCTAATGTCTTTTGATAAGGAGATTTTCGGATCATTATGTTATTATATACCTCATCACTAAAAAAGAGTTCTCTGTGAAAGACAACCAACAATTTATACACACAATAAACTTGTAAGTGCACAAAAAATTAACAATAGGAGGTTATTTCTCAACTGTACGAAATCATAATCCACCCCTTTCAAAAGACCTCCTACTTCTCTCCTTCTAAAGAACCACTGGAGCTAACGGAGCTACATCCCATTTCACTTCTTCTCCTCTTTATTGTAAAGCCCCCCACTCCCCCAGCATTTGCATGATTCTTAAATTTCAAAAATGTTAAAAGTAAGTGGTCACAACTGCCAGGCTATTAGGCAGTGTAGTTGGAGTTAATTAACATCCTCAACCCTCATTTCACACATGTAACACTTTTTGCATATATCAGGCAGCTTTCTTGAAGGAATTGCTCTATAAGTACTGCTTCATATGTTGCTGTCCAGCAAAAGCAAGCCACTTAATAAGGAGCTTCAGTTTTCCAAATTTGTTTCCATGTCAATCTTTGTGTTGCCGCCTTGTATATGCTTGAATACTGCATATGCTTAATTGTCTATGTAAATGATGATATTAATGGCATCTTAATTGACCTTTCCCCTTATGCTGCTTGAACTTGATATGAGTTTCCTCTTCCCCTTTGTTTATTTTGTTGATACAGTTTTATAAGTGGTTCGCGGATCTTGAAGCAGCCATGAAATTAGAGGTTGGTCTTTAGCTTGTTTATATGTCTTCCGTTTCTTCCAAAAGTTGTGAGTCATACGTTTCATCTTTTTCACTTGCGGACTAAAAGATATTACATATGCTTTCTTTCTATATATAGTCTGAAGAAAAATATCAGCATTATGCCAGCACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAGGTATTCTGAGAAGAAAAATAATGCTCTTATACTCTTCTCTTAAGCCTTTTGTTGTTGCTGTTCATCTAACTATGCTCGAGTCGACATGCCCTTGCCCTTAAAATTGGCTCTCTTGCAGGTGGATGAAACACTTGACTTGTTCAATGAGTTGCAATTGCAGCATCAAGCAGTGGCAACAAAGACAAGAACTCTTCATGATGCGTGCGATAGACTGGTGTGTCAACCCATTTCTCTTAGCATCTGTGGTTACTTAGCTGTAGATTGTACTTTTCTCTTTCATTCTGTTCAAAATTCTGAGG</genome_strand>
        <mrna_strand>ATTTAATTTTCTCCAGTTTTGGTCTATGTTGAATTTTGAAGAAAAGGAACGTCGTTACTGTAATTTTCATATGAGCGGAAAACCCAAAGCTAAGCCAGAGGATCATCCCAGATCTCCAACTTCATCGTTCAAATCACCCTTTTTTTCAACTTCGAAGTCGAAATTGCTTCCATTGAAGCTCCAAAATCCATATGGTGATGGCTACAATCATCTGTAGTATTGATTGTTTTGGTATCAGTAATTGACTAGTTACTACACAGTCCGTTTCCCCCTCATTTTTCATCAATTCTGTTTCGTTTTACTTTTTACACGAACAGAAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTG....................................................................................GACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAGGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGGTTCGCGGATCTTGAAGCAGCCATGAAATTAGAG.....................................................................................................................TCTGAAGAAAAATATCAGCATTATGCCAGCACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG......................................................................................................................GTGGATGAAACACTTGACTTGTTCAATGAGTTGCAATTGCAGCATCAAGCAGTGGCAACAAAGACAAGAACTCTTCATGATGCGTGCGATAGACTGGTGTGTCAACCCATTTCTCTTAGCATCTGTGGTTACTTAGCTGTAAATTGTACTTTTCTCTTTCATTCTGTTCAAAATTCTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599996" ref_strand="+" ref_description="SGN-U599996 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tacaaagccccatccattgttttggcttactagataatatgcgtctcatttgttccggatgattgtcattaactagagagggtaaaccttatgccgggcaaaggatgactagaacttacatttagtgagaaatgaccctgatactcaatgtcttctggggtagaaatacctaaattgcatgtgatgggtcaagggatgatgaccatagtggctgtttatggccttgatcctgcctattttagtggagcaggttttgtgtctatatatcagaaagacatgcaaaagaaatttcttctagaactctcctccatatttgaactttggtagccctagaagttattttctttttctccttttgttttatcctaatgtcttttgataaggagattttcggatcattatgttattatatacctcatcactaaaaaagagttctctgtgaaagacaaccaacaatttatacacacaataaacttgtaagtgcacaaaaaattaacaataggaggttatttcgcaactgtacgaaatcataatccacccctttcaaaagacctcctacttctctccttctaaagaaccactggagctaacgganctacntcccatttcacttcttctcctctttattgnaaagccccccactcccccagcatttgcatgattcnnaaatttcaaaaatgntaaaagtaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="-" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="74155" stop="72863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73855" g_stop="73163" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="-" ref_id="SGN-U599996" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73855" e_stop="73163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAAGCCCCATCCATTGTTTTGGCTTACTAGATAATATGCGTCTCATTTGTTCCGGATGATTGTCATTAACTAGAGAGGGTAAACCTTATGCCGGGCAAAGGATGACTAGAACTTACATTTAGTGAGAAATGACCCTGATACTCAATGTCTTCTGGGGTAGAAATACCTAAATTGCATGTGATGGGTCAAGGGATGATGACCATAGTGGCTGTTTATGGCCTTGATCCTGCCTATTTTAGTGGAGCAGGTTTTGTGTCTATATATCAGAAAGACATGCAAAAGAAATTTCTTCTAGAACTCTCCTCCATATTTGAACTTTGGTAGCCCTAGAAGTTATTTTCTTTTTCTCCTTTTGTTTTATCCTAATGTCTTTTGATAAGGAGATTTTCGGATCATTATGTTATTATATACCTCATCACTAAAAAAGAGTTCTCTGTGAAAGACAACCAACAATTTATACACACAATAAACTTGTAAGTGCACAAAAAATTAACAATAGGAGGTTATTTCTCAACTGTACGAAATCATAATCCACCCCTTTCAAAAGACCTCCTACTTCTCTCCTTCTAAAGAACCACTGGAGCTAACGGAGCTACATCCCATTTCACTTCTTCTCCTCTTTATTGTAAAGCCCCCCACTCCCCCAGCATTTGCATGATTCTTAAATTTCAAAAATGTTAAAAGTAAGTG</genome_strand>
        <mrna_strand>TACAAAGCCCCATCCATTGTTTTGGCTTACTAGATAATATGCGTCTCATTTGTTCCGGATGATTGTCATTAACTAGAGAGGGTAAACCTTATGCCGGGCAAAGGATGACTAGAACTTACATTTAGTGAGAAATGACCCTGATACTCAATGTCTTCTGGGGTAGAAATACCTAAATTGCATGTGATGGGTCAAGGGATGATGACCATAGTGGCTGTTTATGGCCTTGATCCTGCCTATTTTAGTGGAGCAGGTTTTGTGTCTATATATCAGAAAGACATGCAAAAGAAATTTCTTCTAGAACTCTCCTCCATATTTGAACTTTGGTAGCCCTAGAAGTTATTTTCTTTTTCTCCTTTTGTTTTATCCTAATGTCTTTTGATAAGGAGATTTTCGGATCATTATGTTATTATATACCTCATCACTAAAAAAGAGTTCTCTGTGAAAGACAACCAACAATTTATACACACAATAAACTTGTAAGTGCACAAAAAATTAACAATAGGAGGTTATTTCGCAACTGTACGAAATCATAATCCACCCCTTTCAAAAGACCTCCTACTTCTCTCCTTCTAAAGAACCACTGGAGCTAACGGANCTACNTCCCATTTCACTTCTTCTCCTCTTTATTGNAAAGCCCCCCACTCCCCCAGCATTTGCATGATTCNNAAATTTCAAAAATGNTAAAAGTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583040" ref_strand="+" ref_description="SGN-U583040 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|2500107|sp|Q40134|RAD51_SOLLC (e_value=0) RecName:; (*ATH) AT5G20850.1 (e_value=3e-172)  Symbol: None | DNA repair protein RAD51, putative, identical to Rad51-like protein (Arabidopsis thaliana) GI:2388778; strong similarity to SP:Q06609 DNA repair protein RAD51 homolog 1 {Homo sapiens}; contains Pfam profile PF00633: Helix-hairpin-heli... ; (*SWP) sp|Q40134|RAD51_SOLLC (e_value=0) DNA repair protein RAD51 homolog OS=Solanum lycopersicum GN=RAD51; ">
      <seq>ctcacgcctttgaaatatttccttttgcctccattcttccattctcagtgagcatcaagaaaattagcaatggagcagcagcacaggaatcagaagtcgatgcaagaccaaaatgatgaaatcgaggatgttcaacacggcccttttccagttgaacaacttcaggcatcagggattgcagctctagatgtaaaaaaactcaaggatgctggtctatgtacagttgaatctgttgtttatgctccaagaaaggaacttctgcagataaaaggaattagtgaagctaaagttgacaagattattgaggcagcttcaaaattagtgcctttgggattcactagtgccagccaactccatgcacagaggcttgaaatcatacagataacttctggatcgaaagaacttgacaagatattagaaggaggaatcgaaactggatctattactgaaatttacggagagttccgatgtggaaagactcagctgtgtcacacactatgcgtgacttgtcaacttccattagatcagggaggtggtgaagggaaagcaatgtacattgatgctgagggtactttcagaccacaaagacttttacaaattgcagacaggtatggattgaatggtcctgatgtcctggagaatgtagcctatgctcgagcttataataccgatcatcaatcaagacttttgcttgaggcagcctcaatgatggtggagaccaggtttgctctcatgattgtggacagtgctactgccctttatagaactgacttctctgggagaggagagttgtctgccaggcagatgcatcttgcaaagtttctgagaagccttcagaagttagcagatgagtttggtgttgctgttgttattacgaaccaagttgttgctcaagtggatggttctgctgtatttgctgggcctcaaataaaacccattggtggcaacatcatggcacatgcttctacgacgagactagctctgaggaagggtagggccgaggagcggatttgtaaagtagtcagttcgccatgcttagctgaagcagaagcaagatttcaaatttctgttgaaggagtcactgatgtaaaggactaaatgtgtgatcagcacattgtttactactagtactattttttgtttcctacttggtgtacgattttgtcatcgttttgaaggttagttaaccataaaaagaagtatgctatatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="-" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="93053" stop="88921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92753" g_stop="92589" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92588" i_stop="91310" i_length="1279">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.021" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91309" g_stop="91165" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="310" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91164" i_stop="91035" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91034" g_stop="90924" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="421" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90923" i_stop="90840" i_length="84">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.172" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90839" g_stop="90748" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="513" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90747" i_stop="90657" i_length="91">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90656" g_stop="90562" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="608" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90561" i_stop="90478" i_length="84">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90477" g_stop="90364" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="722" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90363" i_stop="89942" i_length="422">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89941" g_stop="89812" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="852" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="89811" i_stop="89661" i_length="151">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89660" g_stop="89539" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="853" r_stop="974" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="89538" i_stop="89458" i_length="81">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="89457" g_stop="89219" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="975" r_stop="1213" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="-" ref_id="SGN-U583040" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1213</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92753" e_stop="92589"/>
          <exon e_start="91309" e_stop="91165"/>
          <exon e_start="91034" e_stop="90924"/>
          <exon e_start="90839" e_stop="90748"/>
          <exon e_start="90656" e_stop="90562"/>
          <exon e_start="90477" e_stop="90364"/>
          <exon e_start="89941" e_stop="89812"/>
          <exon e_start="89660" e_stop="89539"/>
          <exon e_start="89457" e_stop="89219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACGCCTTTGAAATATTTCCTTTTGCCTCCATTCTTCCATTCTCAGTGAGCATCAAGAAAATTAGCAATGGAGCAGCAGCACAGGAATCAGAAGTCGATGCAAGACCAAAATGATGAAATCGAGGATGTTCAACACGGCCCTTTTCCAGTTGAACAACTTCAGGTTTCCCCCCTTTTCTTCTCTTAATTGAGGAGTTAATTCAATCCTTTTTATATATCAAGTGTCCTAAATCTTGGATTGGGGTAGTTGTTTTGGTGATAGTGATTGTTTATGATTTCAGATTCAGTGTAGCTGGGTCTGATCTTGAATCTTGAATTGTACTTCGTAGGTTAAATGTTGAATCTTGAAATGTGGTTCTGGGTTGAATCTTGAATGGTAAAAAACTGAATTTTGTGAAACAGCTTTTTTTCAAGGTTGAATCTCATCTGCCTCGCTTATGGGAAATGCTTTTTTTTGTTTTGGGGTTTTCTATACTGTCCCCTTTTTGGCTTCTTGGAATGGGTTCGCTATCATAGTGCTCTTGTGGATTATTTCAAGCTAATATTTTTACAGTTATATCTATCTGTCCTTTACTGCCTTAGTTTTGAAGCTAAATGTTGTAGAATGCTTTGTGAAATGGGTTCTCGAAGCGATACCACTGATCTTGAAAACCTGGATGAGTGTTTTTTTGGTATGATGTTTCGATGGAGTCATGGAGCCCTGCGACAAGCCTAAGTTTAGTATTTAAGTGGAGAATGGTAGAGGAGTGACCCATCATTCCTGAGTTCGAATGCTATTGTTGGCAATAAGGGTTGGCTCAAAACAAATTTCTAGGTCATCAATTAAAAAAAACGATGTTGCTACAATGGTTTTGCTGCCCGTAATTACAACCAGTTTTCATTAGAAATTTGTAGGTTACTATCAGAGTGTACAGAATTGAGGGCACCATGAAAAGCTGCTTCTAGAAAGGCACTTGACACAAAATGATTTACATCATGACGCATGATATGGAGGGTCCAATAGGTGGGCGTTGATGGTCAGATATTTTAGTGTGCATCTGGGTTATGCGGTTGGCTTATCAGCTTTGCTCCTTACAAGATTTTATCAGTTTAGATCTTTTTTTGAAGAATTTTAAGTCTCGAGTGATTAACATTTACAGTAACTCAGATAAGTACTTATCATAAGTTTCTCATACTGCAGATTTTAAAAAGATTTACACGAAGTGAAACCTAAACTCTTGAGGATTTTTTAATCTTACTGGTAGTACATAAAAGCTGGACTAGGCATTTCCTAGATTTTTTTCTTGGAATTGTTAATATTTAAGAGGCAATATCTTTGAGTATCTTTTTCCAGTCTAGCTTGTAGTATAGTTGTTTCTGTTGAATGACACCCTGTAATTCTTCCAACTTTTAAAGGAAATGGTCCATTAGTTACTGAGGCATATAGCTTTTTTGTCCTCAAGGCATCAGGGATTGCAGCTCTAGATGTAAAAAAACTCAAGGATGCTGGTCTATGTACAGTTGAATCTGTTGTTTATGCTCCAAGAAAGGAACTTCTGCAGATAAAAGGAATTAGTGAAGCTAAAGTTGACAAGATTATTGAGGCAGGCATGTCTCTCTTCATTTAACTGCCATTGCCAGTGCTGATGTTTTTTCCCCTTACCTTCTTTTTTCACCCATTTCTGCAATTTTTTATCAGCAATCGGTACTAAATCTTTTTAATGCTGCATATGAACAGCTTCAAAATTAGTGCCTTTGGGATTCACTAGTGCCAGCCAACTCCATGCACAGAGGCTTGAAATCATACAGATAACTTCTGGATCGAAAGAACTTGACAAGATATTAGAAGGTAGTTATTTATCTAATTTGTGAACTTCTAGAACCGGAATTTGACCTGGCATCACAACCTCATACTTTTTTTGTCACTTGTCAGGAGGAATCGAAACTGGATCTATTACTGAAATTTACGGAGAGTTCCGATGTGGAAAGACTCAGCTGTGTCACACACTATGCGTGACTTGTCAAGTACGATAACATAGACATTTTTTTAATTTTAAAATCCCATAATAAAGTGCACAAGATTCATTCAAATATCATTCTTTATCTGTTATTTCAGCTTCCATTAGATCAGGGAGGTGGTGAAGGGAAAGCAATGTACATTGATGCTGAGGGTACTTTCAGACCACAAAGACTTTTACAAATTGCAGACAGGTCTTCTACTAGTAACTCAACTCACATGTTTTTCTGGTATTATGAAGTTCAAACTGTTGTCATCAGTGGGGTTAAATGCTGCAGGTATGGATTGAATGGTCCTGATGTCCTGGAGAATGTAGCCTATGCTCGAGCTTATAATACCGATCATCAATCAAGACTTTTGCTTGAGGCAGCCTCAATGATGGTGGAGACCAGGTTAACTTTCTCCATATTCCACTGCTCATTTATGAAAAAAATTTCTCATGCTTCTCAGTGGCTGTGATACTTTGAGCAAGAAAATGTGCTTAGATTATATCTTTTAGAGAATATTCCAACTCTTGATTGAGTATGTTGAAGGGTTCTAGTTTGAAGCAGCTCTCAATTTGTTTGATTATGGATGTCCATCTTACATCTAATGCATGTTTGGATACATCTTGGATCTGTTTGAAGTGTGCTCTCACCTGTTTCAAACAAATAAATCTTTTTGAAGTGTTCTAGAATTCAAAAAAAAATTTGCTTCCTGAATATAGTGAAAATCTTGAATTTGTGGCTTCCTTAGTTATTTGGGTTCATCTCATCAAAGCATAAAAAAGATCTCTGATAGAAGCTTAACTTTGAAAACTGTTTTGATCAAGCAGGTTTGCTCTCATGATTGTGGACAGTGCTACTGCCCTTTATAGAACTGACTTCTCTGGGAGAGGAGAGTTGTCTGCCAGGCAGATGCATCTTGCAAAGTTTCTGAGAAGCCTTCAGAAGTTAGCAGATGAGGTATTTAGCATGTCCCTCATTTGTGCATATTATCCAAAATGGAGTCTCCTCCTTCCTATTTTTCTCTCTTTGGTGGTGGTTAATGTTTTAGAATTAGATTAGGGGTTCTTGACTTACTTTTTCTATCTATCCTTTACTTTTACACTTGCAGTTTGGTGTTGCTGTTGTTATTACGAACCAAGTTGTTGCTCAAGTGGATGGTTCTGCTGTATTTGCTGGGCCTCAAATAAAACCCATTGGTGGCAACATCATGGCACATGCTTCTACGACGAGGTACGCATAATAGTACAACTATAACTTGCAGGCGCAGCTTATCTTGATAGCTGATATTTTACTCTCTTCAAATTCTGACAGACTAGCTCTGAGGAAGGGTAGGGCCGAGGAGCGGATTTGTAAAGTAGTCAGTTCGCCATGCTTAGCTGAAGCAGAAGCAAGATTTCAAATTTCTGTTGAAGGAGTCACTGATGTAAAGGACTAAATGTGTGATCAGCACATTGTTTACTACTAGTACTATTTTTTGTTTCCTACTTGGTGTACGATTTTGTCATCGTTTTGAAGGTTAGTTAACCATAAAAAGAAGTATGCTATATGAA</genome_strand>
        <mrna_strand>CTCACGCCTTTGAAATATTTCCTTTTGCCTCCATTCTTCCATTCTCAGTGAGCATCAAGAAAATTAGCAATGGAGCAGCAGCACAGGAATCAGAAGTCGATGCAAGACCAAAATGATGAAATCGAGGATGTTCAACACGGCCCTTTTCCAGTTGAACAACTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAGGGATTGCAGCTCTAGATGTAAAAAAACTCAAGGATGCTGGTCTATGTACAGTTGAATCTGTTGTTTATGCTCCAAGAAAGGAACTTCTGCAGATAAAAGGAATTAGTGAAGCTAAAGTTGACAAGATTATTGAGGCAG..................................................................................................................................CTTCAAAATTAGTGCCTTTGGGATTCACTAGTGCCAGCCAACTCCATGCACAGAGGCTTGAAATCATACAGATAACTTCTGGATCGAAAGAACTTGACAAGATATTAGAAG....................................................................................GAGGAATCGAAACTGGATCTATTACTGAAATTTACGGAGAGTTCCGATGTGGAAAGACTCAGCTGTGTCACACACTATGCGTGACTTGTCAA...........................................................................................CTTCCATTAGATCAGGGAGGTGGTGAAGGGAAAGCAATGTACATTGATGCTGAGGGTACTTTCAGACCACAAAGACTTTTACAAATTGCAGACAG....................................................................................GTATGGATTGAATGGTCCTGATGTCCTGGAGAATGTAGCCTATGCTCGAGCTTATAATACCGATCATCAATCAAGACTTTTGCTTGAGGCAGCCTCAATGATGGTGGAGACCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCTCTCATGATTGTGGACAGTGCTACTGCCCTTTATAGAACTGACTTCTCTGGGAGAGGAGAGTTGTCTGCCAGGCAGATGCATCTTGCAAAGTTTCTGAGAAGCCTTCAGAAGTTAGCAGATGAG.......................................................................................................................................................TTTGGTGTTGCTGTTGTTATTACGAACCAAGTTGTTGCTCAAGTGGATGGTTCTGCTGTATTTGCTGGGCCTCAAATAAAACCCATTGGTGGCAACATCATGGCACATGCTTCTACGACGAG.................................................................................ACTAGCTCTGAGGAAGGGTAGGGCCGAGGAGCGGATTTGTAAAGTAGTCAGTTCGCCATGCTTAGCTGAAGCAGAAGCAAGATTTCAAATTTCTGTTGAAGGAGTCACTGATGTAAAGGACTAAATGTGTGATCAGCACATTGTTTACTACTAGTACTATTTTTTGTTTCCTACTTGGTGTACGATTTTGTCATCGTTTTGAAGGTTAGTTAACCATAAAAAGAAGTATGCTATATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603521" ref_strand="+" ref_description="SGN-U603521 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|218192735|gb|EEC75162.1| (e_value=3e-27) hypothetical; ">
      <seq>ctccaatggaaataatggtattgaatacaaatgtaacaagatcaatgcagtgcaacattgaatggaatggtgatgttggatttgaaatgttagaaggggtatacaagcatactgtgaacttgggtcaacaaaaatgtagttgaagatcatgggaattaaaaggtatcccatgtgcacatggtatagcagcaatgaactacttgaacatggatgcatcacaagcaatatctagttcgtatagaaaagacacaaatatgaagacatattctcatttcattcaaccagtcccaaacatggaaatgtggcctgaaagtagaaacccaatggttaaaccacctaaggcaagacaaatgcctggtaggtcaccaaagaatagaagaagagaaattggtgaagtgagaaaagctggaaagttgccaagaatggggacactaatgacatattcactttgcaaaggaccaaatcataacaagagaaattgtccaaaaaatcctaaacctatgtctacaccaacacccactcaagagtccaccactggaaaaaaagtggtagaggttattatgaaagaacaagcactagtaagacaggtacnagaagaggtgcaggaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="+" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="102880" stop="104179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103180" g_stop="103706" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103707" i_stop="103795" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103796" g_stop="103879" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="610" r_length="83" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="+" ref_id="SGN-U603521" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103180" e_stop="103706"/>
          <exon e_start="103796" e_stop="103879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAATGGCAATGATGGTATTCAATACAAATGTAACAAGATCAATGCAGTGCAACATTGAATGGAATGGTGATGTTGGATTTGAAGTGTTAGAAGTGGTATACAAGCATACTGTGAACTTGGGTCAACAAAAATGTAATTGCAGATCATGGGAATTAAAAGGTATCCCATGTGCACATGGTATAGCAACAATCAACCACTTGAACATAGATGCATCACAAGCAATATCTAGTTGGTATAGAAAAGACACATATATGAAGACATATTCTTATTTCACTCAACCAGTCCCAAACATGGAAATGTGGCTTGAAAGTAGAAACCTAATGGTTGAACCACCTGAGGCAAGATAAATGCCTGGTAGGCCACCAAAGAACAGAAGAAGAGAAATTGGTGAAGTGAGAAAAGTTGGAAAGTTGCCAAGAATGGGGACAGTAATGACATGTTCACTTTGTAAAGGACCAAATCATAACAAGAGAAATTGTCCAAAAAATCCTAAACCTAAGTCTACACCAACACCCACTCAAGAGGTACATTCATATTAATTTGCTTTTAGAAATTATGTTAGATTACTTATTAAATTTAATGTCTTGTTGTGTTCTTTTTCCAATCATATTAGTCCACCATTGGAAAAAAGAGGGGTAGAGGTCATTATGAAAGAACAAGCACCAGTAAGACTGGTACAAGAAGAGGTGCAGGAAGT</genome_strand>
        <mrna_strand>CTCCAATGGAAATAATGGTATTGAATACAAATGTAACAAGATCAATGCAGTGCAACATTGAATGGAATGGTGATGTTGGATTTGAAATGTTAGAAGGGGTATACAAGCATACTGTGAACTTGGGTCAACAAAAATGTAGTTGAAGATCATGGGAATTAAAAGGTATCCCATGTGCACATGGTATAGCAGCAATGAACTACTTGAACATGGATGCATCACAAGCAATATCTAGTTCGTATAGAAAAGACACAAATATGAAGACATATTCTCATTTCATTCAACCAGTCCCAAACATGGAAATGTGGCCTGAAAGTAGAAACCCAATGGTTAAACCACCTAAGGCAAGACAAATGCCTGGTAGGTCACCAAAGAATAGAAGAAGAGAAATTGGTGAAGTGAGAAAAGCTGGAAAGTTGCCAAGAATGGGGACACTAATGACATATTCACTTTGCAAAGGACCAAATCATAACAAGAGAAATTGTCCAAAAAATCCTAAACCTATGTCTACACCAACACCCACTCAAGAG.........................................................................................TCCACCACTGGAAAAAA-AGTGGTAGAGGTTATTATGAAAGAACAAGCACTAGTAAGACAGGTACNAGAAGAGGTGCAGGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604002" ref_strand="+" ref_description="SGN-U604002 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|133711804|gb|ABO36622.1| (e_value=2e-152) copia; (*ATH) AT4G23160.1 (e_value=1e-36) | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50; (*SWP) sp|P10978|POLX_TOBAC (e_value=4e-86) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>gggtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="-" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="122812" stop="121405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122513" g_stop="121705" g_length="809"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="810" r_length="810" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="-" ref_id="SGN-U604002" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122513" e_stop="121705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGATATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGAAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCTTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTAGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAG-TCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575023" ref_strand="+" ref_description="SGN-U575023 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|133711804|gb|ABO36622.1| (e_value=0) copia; (*ATH) AT4G23160.1 (e_value=3e-26) | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-68) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>ganggnntgctcgacatcgtacagtcagaaatacaccacagcagaacggtgtagctgagcggatgaatcaaacacttctggagagagcaaggtgcatgctctctaatgctgggctagatagaagattctgggcagaagcggttagtacagcttgctacttgattaaccgcggaccacatacaggcatacagtgcaagacacctatggagatgtggtcagaaaaagctgctgattattcaaatctgaaagcttttggttgtatggcctactatcacgtcagtgaaggtaagttagaaccaagagctaaaaagggagtatttgtgggctacggagatggagtgaaaggtttcagaatctggtctccagcagaaaagagggttattatgagcaggaacgttgtctttgatgaaagttctctgcttagaaccattgtgaagcctacaactacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgactcagccggatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="-" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="123914" stop="122210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123615" g_stop="122510" g_length="1106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1106" r_length="1106" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="-" ref_id="SGN-U575023" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>1106</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123615" e_stop="122510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGATTGCTCGACATCGTACAGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCAGGAAAAGCTGCTGATTATTCAAATCTGAAAGTTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGATCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTTCTCTTCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCTAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGT</genome_strand>
        <mrna_strand>GANGGNNTGCTCGACATCGTACAGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCAGAAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTATGGCCTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTTCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603118" ref_strand="+" ref_description="SGN-U603118 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|133711804|gb|ABO36622.1| (e_value=8e-56) copia; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-23) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>cctagagttttgtgaacattgtgtttttggaaaactacatcgcaacaagtttccaaaggccattcatagaacaaaaggcacacttgattatatccattctgattgctggggtccatgccgtgttgagtctttgggaggctgcagattttttgtgtccattattgatgactactcaaggatgacttgggtgtacatgatgaagcataaaagtgaagccttccagaagtttaaggagtggaaaattttgatggaaaatcaaacagggaagaagatcaagaggttgcgaactgataatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="-" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="124256" stop="123358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123956" g_stop="123658" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="-" ref_id="SGN-U603118" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123956" e_stop="123658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGAGTTTTGTGAACATTGTATTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCAATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGGGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAAAAGTTCAAGGAGTGGAAATTTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGC</genome_strand>
        <mrna_strand>CCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGGGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTTAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582729" ref_strand="+" ref_description="SGN-U582729 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|118485585|gb|ABK94644.1| (e_value=1e-28) unknown; (*ATH) AT3G60730.1 (e_value=3e-27) | Symbol: None | pectinesterase family protein, contains Pfam profile: PF01095 pectinesterase | chr3:22455865-22458248 FORWARD | Aliases: T4C21.140; (*SWP) sp|P83947|PME1_FICAW (e_value=8e-29) Pectinesterase OS=Ficus awkeotsang; ">
      <seq>gaaaattcgagacaaattaaacgatctatttatattattccttcaaatgcactaaacactttttttttttttataattttcttcctctaatgccttcatttgtagtccttatatgaatctaccgcgcacaagtgaaaattagataatgaatagtattcattacaattattcagtatatatcgattctttgttataatatacgtacatacgtacgtaaatacgtcttagaaaattttttcgtagaatgttcactacttgtacaagatcatgattaagaacagactaaattgagataactaagatgaagacgatcgtaatttgacatggaattaaaaggaagaaagattaatttgacatgatgaagatgatgacgatgacgaagaagatgattagctggaaaggctaaaacgaacttgaacatcgagatccttcaaccaagtttggccttgtaagaaggattcaactgtgtaattcaacgcgatatccttacttattgtgccttgatatccagcccatttaactctggagcccgttccagatccagctcctctgttgctatattccccgaaatacagagtgcttaatgcatagtccccgtttgtagcctcccatccttctggatcaattacgtcagtaatgtccgtttccattacaatcgtcctagagtattccttcattggtcgacccaagtaactcttgaactttgatttttcaagttcaagtgtatcgtctgcgaaaatgctacaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="+" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="129019" stop="130370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129319" g_stop="130070" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="+" ref_id="SGN-U582729" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129319" e_stop="130070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTCGAGACAAATTAAACGATCTATTTATATTATTCCTTCAAATGCACTAAACACTTTTTTTTTTTTTATAATTTTCTTCCTCTAATGCCTTCATTTGTAGTCCTTATATGAATCTACCGCGCACAAGTGAAAATTAGATAATGAATAGTATTCATTACAATTATTCAGTATATATCGATTCTTTGTTATAATATACGTACATACGTACGTAAATACGTCTTAGAAAATTTTTTCGTAGAATGTTCACTACTTGTACAAGATCATGATTAAGAACAGACTAAATTGAGATAACTAAGATGAAGACGATCGTAATTTGACATGGAATTAAAAGGAAGAAAGATTAATTTGACATGATGAAGATGATGACGATGACGAAGAAGATGATTAGCTGGAAAGGCTAAAACGAACTTGAACATCGAGATCCTTCAACCAAGTTTGGCCTTGTAAGAAGGATTCAACTGTGTAATTCAACGCGATATCCTTACTTATTGTGCCTTGATATCCAGCCCATTTAACTCTGGAGCCCGTTCCAGATCCAGCTCCTCTGTTGCTATATTCCCCGAAATACAGAGTGCTTAATGCATAGTCCCCGTTTGTAGCCTCCCATCCTTCTGGATCAATTACGTCAGTAATGTCCGTTTCCATTACAATCGTCCTAGAGTATTCCTTCATTGGTCGACCCAAGTAACTCTTGAACTTTGATTTTTCAGGTTCAAGTGTATCGTCTGCGAAAATGCTACAACTTTG</genome_strand>
        <mrna_strand>GAAAATTCGAGACAAATTAAACGATCTATTTATATTATTCCTTCAAATGCACTAAACACTTTTTTTTTTTTTATAATTTTCTTCCTCTAATGCCTTCATTTGTAGTCCTTATATGAATCTACCGCGCACAAGTGAAAATTAGATAATGAATAGTATTCATTACAATTATTCAGTATATATCGATTCTTTGTTATAATATACGTACATACGTACGTAAATACGTCTTAGAAAATTTTTTCGTAGAATGTTCACTACTTGTACAAGATCATGATTAAGAACAGACTAAATTGAGATAACTAAGATGAAGACGATCGTAATTTGACATGGAATTAAAAGGAAGAAAGATTAATTTGACATGATGAAGATGATGACGATGACGAAGAAGATGATTAGCTGGAAAGGCTAAAACGAACTTGAACATCGAGATCCTTCAACCAAGTTTGGCCTTGTAAGAAGGATTCAACTGTGTAATTCAACGCGATATCCTTACTTATTGTGCCTTGATATCCAGCCCATTTAACTCTGGAGCCCGTTCCAGATCCAGCTCCTCTGTTGCTATATTCCCCGAAATACAGAGTGCTTAATGCATAGTCCCCGTTTGTAGCCTCCCATCCTTCTGGATCAATTACGTCAGTAATGTCCGTTTCCATTACAATCGTCCTAGAGTATTCCTTCATTGGTCGACCCAAGTAACTCTTGAACTTTGATTTTTCAAGTTCAAGTGTATCGTCTGCGAAAATGCTACAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582728" ref_strand="+" ref_description="SGN-U582728 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|6714532|dbj|BAA89480.1| (e_value=1e-76) pectin methylesterase [Salix gilgiana]; (*ATH) AT2G26450.1 (e_value=6e-77) | Symbol: None | pectinesterase family protein, contains Pfam profiles: PF01095 pectinesterase,PF04043 plant invertase/pectin methylesterase inhibitor | chr2:11258198-11260690 FORWARD | Aliases: T9J22.12, T9J22_12; (*SWP) sp|P83947|PME1_FICAW (e_value=2e-65) Pectinesterase OS=Ficus awkeotsang; ">
      <seq>gcaacacgattaggtgttcctgcatggattaaacaaggtgatagaagaatgttggatgaagaagaaggcaaagacatgaagtcttttataaacatgacagttgcaaaagatggtagtggtaattttagttccataaatgaagccttaaaggcagttccacaaagctttgaaggaaggttctttatttatattaaagaaggagtttatgaagaaaatgtagttgtgtcacaagtcaatcttacatttgttggagatggatcccaaaagagtattatctccggcagcaaaaacattgtggatgacctcacaacataccaaaccgcaacagttgctatttcaggagatggattttttgcatataagatgggattccgtaacacagcgggtcctaaaaaagtagaagcagtggctctacgagtccaagctgatcatgcaatatttatgaattgtcgtatggagggtcaccaaagtgtgatctatgctcaggcctatcgacaattttatcgtggatgttacatcacaggcacagttgacatcatatcaggaaacgcggctgctgtgttccaaaactgtcaaatttacctaaggaaaccaatgaatgaccaaaagaacgtcattaccgcacaaggaaggttgagcaagcgccaaactacagggactgtcttgcaaagttgtagcattttcgcagacgatacacttgaaccctgaaaatcaaagttcaagagttacttgggtcgaccaatgaaggaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="-" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="131398" stop="129683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131099" g_stop="130924" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130923" i_stop="130835" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.645" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130834" g_stop="130680" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="331" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130679" i_stop="130406" i_length="274">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130405" g_stop="129983" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="754" r_length="423" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="-" ref_id="SGN-U582728" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131099" e_stop="130924"/>
          <exon e_start="130834" e_stop="130680"/>
          <exon e_start="130405" e_stop="129983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACACGATTAGGTGTTCCTGCATGGATTAAACAAGGTGATAGAAGAATGTTGGATGAAGAAGAAGGCAAAGACATGAAGTCTTTTATAAACATGACAGTTGCAAAAGATGGTAGTGGTAATTTTAGTTCCATAAATGAAGCCTTAAAGGCAGTTCCACAAAGCTTTGAAGGAAGGTACAAATATTTACTCCATTTTTTTTACAAATGCAATTAATTAATAGTTGGATCTTCCAATTTTCTTATATATAATGATAACAATGCAGGTTCTTTATTTATATTAAAGAAGGAGTTTATGAAGAAAATGTAGTTGTGTCACAAGTCAATCTTACATTTGTTGGAGATGGATCCCAAAAGAGTATTATCTCCGGCAGCAAAAACATTGTGGATGACCTCACAACATACCAAACCGCAACAGTTGGTAAGTAATAATGAATAAAAGATGCAGGATACAAGGTGGTATAAGTAAACTCTGCATAACTAATGTATTACTAATATCTGCAAAACTCTAATCAGCTACCATACGACCCTTCAACCATGACCAATGAAATAATCTCTTCGGATCTTTGTTGACGCGGACAATATCATTTGGGGTTATTATATAACGTTTAATTGACGATATAAGAAAATAACCAATGTTACATTATATTGTAAAGTTAATTATATTCTTCTTATTTCCCCTATGTCTTGTGCAGCTATTTCAGGAGATGGATTTTTTGCATATAAGATGGGATTCCGTAACACAGCGGGTCCTGAAAAATTAGAAGCAGTGGCTCTACGAGTCCAAGCTGATCATGCAATATTTATGAATTGTCGTATGGAGGGTCACCAAAGTGTGATCTATGCTCAGGCCTATCGACAATTTTATCGTGGATGTTACATCACAGGCACAGTTGACATCATATCAGGAAACGCGGCTGCTGTGTTCCAAAACTGTCAAATTTACCTAAGGAAACCAATGAATGACCAAAAGAACGTCATTACCGCACAAGGAAGGTTGAGCAAGCGCCAAACTACAGGGACTGTCTTGCAAAGTTGTAGCATTTTCGCAGACGATACACTTGAACCTGAAAAATCAAAGTTCAAGAGTTACTTGGGTCGACCAATGAAGGAATACT</genome_strand>
        <mrna_strand>GCAACACGATTAGGTGTTCCTGCATGGATTAAACAAGGTGATAGAAGAATGTTGGATGAAGAAGAAGGCAAAGACATGAAGTCTTTTATAAACATGACAGTTGCAAAAGATGGTAGTGGTAATTTTAGTTCCATAAATGAAGCCTTAAAGGCAGTTCCACAAAGCTTTGAAGGAAG.........................................................................................GTTCTTTATTTATATTAAAGAAGGAGTTTATGAAGAAAATGTAGTTGTGTCACAAGTCAATCTTACATTTGTTGGAGATGGATCCCAAAAGAGTATTATCTCCGGCAGCAAAAACATTGTGGATGACCTCACAACATACCAAACCGCAACAGTTG..................................................................................................................................................................................................................................................................................CTATTTCAGGAGATGGATTTTTTGCATATAAGATGGGATTCCGTAACACAGCGGGTCCTAAAAAAGTAGAAGCAGTGGCTCTACGAGTCCAAGCTGATCATGCAATATTTATGAATTGTCGTATGGAGGGTCACCAAAGTGTGATCTATGCTCAGGCCTATCGACAATTTTATCGTGGATGTTACATCACAGGCACAGTTGACATCATATCAGGAAACGCGGCTGCTGTGTTCCAAAACTGTCAAATTTACCTAAGGAAACCAATGAATGACCAAAAGAACGTCATTACCGCACAAGGAAGGTTGAGCAAGCGCCAAACTACAGGGACTGTCTTGCAAAGTTGTAGCATTTTCGCAGACGATACACTTGAACCCTGAAAATCAAAGTTCAAGAGTTACTTGGGTCGACCAATGAAGGAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594640" ref_strand="+" ref_description="SGN-U594640 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157342458|emb|CAO65170.1| (e_value=1e-20) unnamed; ">
      <seq>agccccttcaccacaaggtgaaggagctatgggagcaatatgcgcggcaacagatttcagtcaaagatgtggggacattctatcaaaagttgtacaagcaaatgcctctggtgctcaacctacagatcttctcaaggcaaccgtatctgcagctatcgatgagattgctgccggtattgtacaactagacaaaatcaacaaggatatcccagagaaggctgttgctcatgacgattgtatagccctccttggtgatgccaaaaaagacttgaacgcttccatttacttgcttgaaggtggcgttaatgatgtcgccacaacaaccgctgaacttaataacaagttaagtgcagctttgacattccaaatcatgtgtgtggatggataccctgaagcacaccaatccacagtgcaaagcgccttgtagaaaacagaggaacacaccaccaattctctcgttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="-" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="131925" stop="130862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131625" g_stop="131162" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="-" ref_id="SGN-U594640" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131625" e_stop="131162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCCCTCACCACAAGGTGAAGGAGCTATGGGAGCAATATGCGCGGGAACAGATTTCAGTCAAAGTTGTGGGGACATTCTATCAAAAGTTGTACAAGCAAATGCCTCTGGTGCTCAACCTACAGATCTTCTCAAGGCAACCGTATCTGCAGCTATCGATGAGATTGCTGCCGGTATTGTAGAACTAGACAAAATCAACAAGGATATCCCAGAGAAGGTCGTTGCTCATGACGATTGTATGGCCCTCCTTGGTTATGCCAAAAAAGACTTGAACGCTTCGATTTACTTGCTTGAAGGTGGCGTTAATGATGTCGCCACAACAACCGCTGAACTTAATAACAAGTTAAGTGCAGCTTTGACATTCCAAAGCATGTGTGTGGATGGATACCCTGAAGCAGACCAGTCCACGGTGCAAAGCGCCTTGAAGAAAACAGAGGAACACACCACCAATTCTCTTGTTGTTG</genome_strand>
        <mrna_strand>AGCCCCTTCACCACAAGGTGAAGGAGCTATGGGAGCAATATGCGCGGCAACAGATTTCAGTCAAAGATGTGGGGACATTCTATCAAAAGTTGTACAAGCAAATGCCTCTGGTGCTCAACCTACAGATCTTCTCAAGGCAACCGTATCTGCAGCTATCGATGAGATTGCTGCCGGTATTGTACAACTAGACAAAATCAACAAGGATATCCCAGAGAAGGCTGTTGCTCATGACGATTGTATAGCCCTCCTTGGTGATGCCAAAAAAGACTTGAACGCTTCCATTTACTTGCTTGAAGGTGGCGTTAATGATGTCGCCACAACAACCGCTGAACTTAATAACAAGTTAAGTGCAGCTTTGACATTCCAAATCATGTGTGTGGATGGATACCCTGAAGCACACCAATCCACAGTGCAAAGCGCCTTGTAGAAAACAGAGGAACACACCACCAATTCTCTCGTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570648" ref_strand="+" ref_description="SGN-U570648 Tomato 200607#2 [8 ESTs aligned] ">
      <seq>tcaagttccactaaataagagggaataaacagagaaataaacaaaaaaaaaagaacaaataaataagctaaacaccaaataaaacatcatcttggtgtaacatctctgccttggtttgggatccagggcagagatctttttaatctctgtctctattccggactcgaatccaaaatggcgtttcaagattttgatcaaatttcagagcggaggaagctcgagagacagcaaaagatgaagaagaggataatgattggtgttgtattgctactcctcattctcattgctgttgctgctgctgttgtctattttgttgtgtttaaaaacaagagcggtgattcctcctccgctagtaaatctaataagaacgcgtcaacgcctcctccaaaagaaactgaaacagcgactcctaaggttgatgcatcacctcctccacctgaggctgctgatacaacaccaccttctgataaaggtggtgctactgcccctccaccaaatgtggacggagctccagcaccggctggggatgcagcacctcctgcaccaccacctgatggtgctgcagcagcaccgactggggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00SLm0024O10-IcJFU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00SLm0024O10.1" temp_strand="-" temp_description="C00SLm0024O10.1  CU914759.6 htgs_phase:3 submitted_to_sgn_as:C00SLm0024O10 sequenced_by:sanger upload_account_name:uk">
        <position start="132481" stop="131328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132208" g_stop="131645" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00SLm0024O10.1" gen_strand="-" ref_id="SGN-U570648" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00SLm0024O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132208" e_stop="131645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTCCACTAAATAAGAGGGAATAAACAGAGAAATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACACCGACTCCTAAGGCTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAGCACCACCTTCTGATGAAGGTGGTGCTGCTGCCCCTCCACCAAATGTGGACGGAGCTGCAGCACCGGCTGGGGATGCAGCACCTGCTGCACCATCACCCGAGGGTG</genome_strand>
        <mrna_strand>TCAAGTTCCACTAAATAAGAGGGAATAAACAGAG----AAAT-AAACAAAAAAAAAAGAACAAATAAATAAGCTAAACACCAAATAAAACATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTGCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACAGCGACTCCTAAGGTTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAACACCACCTTCTGATAAAGGTGGTGCTACTGCCCCTCCACCAAATGTGGACGGAGCTCCAGCACCGGCTGGGGATGCAGCACCTCCTGCACCACCACCTGATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="11989" PGL_stop="24744"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11989" e_stop="12175"/>
            <exon e_start="12275" e_stop="12606"/>
            <exon e_start="15316" e_stop="15439"/>
            <exon e_start="15525" e_stop="15683"/>
            <exon e_start="16813" e_stop="18315"/>
            <exon e_start="23308" e_stop="23574"/>
            <exon e_start="23990" e_stop="24744"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.569" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.672" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11989" e_stop="12175" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.913">
            <gDNA_intron_boundary i_start="12176" i_stop="12274" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12275" e_stop="12606" e_length="332"/>
          </exon>
          <intron i_serial="2" don_prob="0.569" acc_prob="0.915">
            <gDNA_intron_boundary i_start="12607" i_stop="15315" i_length="2709"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15316" e_stop="15439" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.672">
            <gDNA_intron_boundary i_start="15440" i_stop="15524" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15525" e_stop="15683" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.758" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15684" i_stop="16812" i_length="1129"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16813" e_stop="18315" e_length="1503"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="18316" i_stop="23307" i_length="4992"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23308" e_stop="23574" e_length="267"/>
          </exon>
          <intron i_serial="6" don_prob="0.970" acc_prob="0.981">
            <gDNA_intron_boundary i_start="23575" i_stop="23989" i_length="415"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="23990" e_stop="24744" e_length="755"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11989" stop="12175"/>
              <exon start="12275" stop="12606"/>
              <exon start="15316" stop="15439"/>
              <exon start="15525" stop="15683"/>
              <exon start="16813" stop="18315"/>
              <exon start="23308" stop="23574"/>
              <exon start="23990" stop="24744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTAGGGTCACTACAGCAAGATTATCCTTCCTCACCTTCCGACCAACTGATTATTGTAGTATGCCTTTCAACACGCTGTGTTTGGAAAGGAACTGTTTGTGAGCCACCTCATATTTCTCGAATAAAATTTTATGGGATTACCGATATGCCTTTGGGACGGTTTTTACGAGACCGGTTGTTTGATGAG : AATTTTAGGTGTCCCTCATGTGAAATGCCTCCAGAAGCACATGTTCGTTGCTATACTCATCGGCAAGGCAGCCTCACAATTTCTGTAAAGAAGCTACCTGAATGTATCTTGCCAGGAGAACAGGAAGGAAAGATATGGATGTGGCACAGATGTCTGCGATGTCCTCGGGACAATGGTTTCCCTCCTCCAACCAGGAGGGTAGTAATGTCTAATGCTGCTTGGGGGTTGTCATTTGGGAAATTTTTGGAACTCAGTTTTTCAAATCATGCAGCAGCGAGCAGGGTTGCAAGTTGTGGTCATCTTCTTCACCGGGACTGTCTCCGGTTCTATGG : GTTTGGGAAAATGGTAGCTTGTTTTCGATATGCTCCTGTTCATGTTTATTCTGTCTTTCTCCCACCTCCAAAACTCGAATTTAGCTATGATAATCAGGAGTGGATTCAGAAAGAAGGTGATGAG : GTGCGCAGAAGGGCTAATGCGTTGTTTGCTGAGGTGTCCAAAGTTCTTCATGTCAAGTTGGAAAAATTCTCTGTTGATAGCAGCTTGAAAGCACCCAAGACAAGTGAGCAGATCACAGAGATGGAAGAAATATTAGAGAAGGAGAAAACTGAGTTTGAG : GGATTATTACGCAAGGCACTTAGCAGGGAGATCAAAGTTGGTCAGCCTACAGTTGACATCCTTGAGATAAATCAACTGAGAAGGCAGTTGGTTTTTCATGCTTATCTATGGGACAGACGTTTGATACATCTTTCCAGTTCTCATGGTAAAAATTCCCGAACTCCGGGCAGTTTGACACAACTGAAGGAGAAACCCCTCAGCTCTAGTGAGGAACTTCCTGAAAGGACTGCAATTTTGAGACCTGGAAAAAGTTTGGGGAGCTATGATTCAGCTCTTCAGAATGTGAAGACTGAAATAACATCTAGTGAAGGAAGACATGGTCAGATTCCTGATGGGGTTCACGAAAGATTGACTACTGATGAGAACCTAACTCACGGGAAAGACTGCGAGATTTTCTGTGCTATAAGAAATACAGGAGATGGTAATGTACTGGAACCTGGAAAAAATGTCAGACGTGTTCTTTCAGATGCAAAGTTCCCGTCTGTGGGAAGTTTATCCGACACTCTTGATGCTGCATGGACCGGTGAAAGCCACCTGGCTATTAAAGAGCATAACAGTGCATTTCCAGGTTCGTTCGTTGTAGATTCTACTGCTTTGACTGGAGTTTCAGCAAATACAGATGTCGAAAGGTCTCTGTGTGACAAAAATGGGGCTGAAATACCTCATTTATCTGCTAAGTCTGACAACACAGATTACCTGACCTGGGCAACGGCACATTTCTCAAATTTCTATCGTTCGTTCAACAAGAATATCACAGCAAATCCACAATATGTTGCTAAATTGAATGAGCATAATCCTGTTTATATCTTGTCGTTTAGCGAATTGCTACATCAAGGTGGTGCCAGGCTTCTTACAGCTGTTGGTGAAAATGACATTGTTATTCCAGTTTATGATGATGAGCCGACAAGTATCATCTCATATGCACTTGTCTCACCAGATTACCGCAATCAAATGTCAGATGAATCTCAAAACCTGAAAGAAAATCACAAGTTTTCAGCTTCTTTGTCATTTCTGGATTCATTAAATCTACTTCCGCTTCACTCTGTGGATGGAGTAGTTTCGGAATCTCCAAGAAGTTTTGGATCTACCAACGAAAGCATGTCATCGGGTTATAGTTCTCGCAGCTCAAACATGGATCCACCAGCATATATTAATGCTTTGCATGCCCGAATATCTTTCTCAGATGATGGCCCTCCTGGAAAGGTTAAGTACACAGTCACCTGCTATTATGCGAAGCAATTCGAGACCTTGAGAAAGTCTTGTTGCCCCAATGAATCAGACTTTATACGTTCCCTTAGCCGATGCAAAAAATGGGGTGCTCAGGGTGGGAAGAGCAATGTTTTCTTTGCCAAAACCTTGGACGACCGATTTATCATCAAGCAGGTAACGAAGACAGAGTTGGAGTCATTTATCAAGTTTGCACCAGCTTACTTTAAGTATTTATCTGACTCAATAGCTAGTGGGAGCCCAACTTGCTTGGCAAAGATTCTGGGGATCTACCAG : GTTACATCAAAGCATCTCAAAGGTGGGAAAGAATCAAGAATGGATGTGCTTGTTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTCTCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGGGAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCG : TCAATAGATGTGATGGATTACTCATTACTAGTTGGGGTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTCAGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTCTGATGGTGCCAGATGAGTGGCCTACATGAAGTGATACCCCAAGTATCAGTGCAGAAAAATTGCCCCGGCCGGTCTTGGTATAATTTTATCCATCCTTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAGGAATGTTGGGTAGTTGCTTTATCATTAGAGGATTACTTTTGTTTTTCCAAAGTAGTAGTATTACAGAGTTATTTCCATACAAAGAATTTGTTAGTTTCTGGGCGTTCCGCCAGTTGTACAGTCAATAGTCGGTCTTCGTTTCTTTTTATCCCACATTCTGATGCTCAATGGAAGCTCTTGGTATATTCATGTGTTTACATGAGAATTGAGACTCTTTTGACAAGGGCTGCCGTGGTAGCAGTAAAGATCAATGTAATTTGATCTTGTAAGTCCTACAATCGGATGGTTTCAAATAAGCTGCACTCGCGACATTTTGATTTTCAGGCACCTATGCAATGAGTTGTACTTGTCGCGATTCTTCGCCTCCTTCCTATTTTGCACACGGTATAGGTTGATCA</gDNA_template>
            <first_frame> V  R  V  T  T  A  R  L  S  F  L  T  F  R  P  T  D  Y  C  S  M  P  F  N  T  L  C  L  E  R  N  C  L  *  A  T  S  Y  F  S  N  K  I  L  W  D  Y  R  Y  A  F  G  T  V  F  T  R  P  V  V  *  *   : E  F  *  V  S  L  M  *  N  A  S  R  S  T  C  S  L  L  Y  S  S  A  R  Q  P  H  N  F  C  K  E  A  T  *  M  Y  L  A  R  R  T  G  R  K  D  M  D  V  A  Q  M  S  A  M  S  S  G  Q  W  F  P  S  S  N  Q  E  G  S  N  V  *  C  C  L  G  V  V  I  W  E  I  F  G  T  Q  F  F  K  S  C  S  S  E  Q  G  C  K  L  W  S  S  S  S  P  G  L  S  P  V  L  W  :  V  W  E  N  G  S  L  F  S  I  C  S  C  S  C  L  F  C  L  S  P  T  S  K  T  R  I  *  L  *  *  S  G  V  D  S  E  R  R  *  *   : G  A  Q  K  G  *  C  V  V  C  *  G  V  Q  S  S  S  C  Q  V  G  K  I  L  C  *  *  Q  L  E  S  T  Q  D  K  *  A  D  H  R  D  G  R  N  I  R  E  G  E  N  *  V  *   : G  I  I  T  Q  G  T  *  Q  G  D  Q  S  W  S  A  Y  S  *  H  P  *  D  K  S  T  E  K  A  V  G  F  S  C  L  S  M  G  Q  T  F  D  T  S  F  Q  F  S  W  *  K  F  P  N  S  G  Q  F  D  T  T  E  G  E  T  P  Q  L  *  *  G  T  S  *  K  D  C  N  F  E  T  W  K  K  F  G  E  L  *  F  S  S  S  E  C  E  D  *  N  N  I  *  *  R  K  T  W  S  D  S  *  W  G  S  R  K  I  D  Y  *  *  E  P  N  S  R  E  R  L  R  D  F  L  C  Y  K  K  Y  R  R  W  *  C  T  G  T  W  K  K  C  Q  T  C  S  F  R  C  K  V  P  V  C  G  K  F  I  R  H  S  *  C  C  M  D  R  *  K  P  P  G  Y  *  R  A  *  Q  C  I  S  R  F  V  R  C  R  F  Y  C  F  D  W  S  F  S  K  Y  R  C  R  K  V  S  V  *  Q  K  W  G  *  N  T  S  F  I  C  *  V  *  Q  H  R  L  P  D  L  G  N  G  T  F  L  K  F  L  S  F  V  Q  Q  E  Y  H  S  K  S  T  I  C  C  *  I  E  *  A  *  S  C  L  Y  L  V  V  *  R  I  A  T  S  R  W  C  Q  A  S  Y  S  C  W  *  K  *  H  C  Y  S  S  L  *  *  *  A  D  K  Y  H  L  I  C  T  C  L  T  R  L  P  Q  S  N  V  R  *  I  S  K  P  E  R  K  S  Q  V  F  S  F  F  V  I  S  G  F  I  K  S  T  S  A  S  L  C  G  W  S  S  F  G  I  S  K  K  F  W  I  Y  Q  R  K  H  V  I  G  L  *  F  S  Q  L  K  H  G  S  T  S  I  Y  *  C  F  A  C  P  N  I  F  L  R  *  W  P  S  W  K  G  *  V  H  S  H  L  L  L  C  E  A  I  R  D  L  E  K  V  L  L  P  Q  *  I  R  L  Y  T  F  P  *  P  M  Q  K  M  G  C  S  G  W  E  E  Q  C  F  L  C  Q  N  L  G  R  P  I  Y  H  Q  A  G  N  E  D  R  V  G  V  I  Y  Q  V  C  T  S  L  L  *  V  F  I  *  L  N  S  *  W  E  P  N  L  L  G  K  D  S  G  D  L  P   : G  Y  I  K  A  S  Q  R  W  E  R  I  K  N  G  C  A  C  Y  G  K  S  S  F  *  A  Q  H  H  *  T  V  *  P  Q  R  V  V  S  I  T  L  *  S  R  F  K  W  K  *  Q  S  F  T  *  S  E  L  D  *  S  N  A  N  F  S  D  F  C  G  N  A  S  *  A  A  A  A  E  S  C  V  E  *  Y  F  I  S  S   : V  N  R  C  D  G  L  L  I  T  S  W  G  G  *  E  E  A  G  T  G  A  W  Y  Y  *  F  H  E  T  V  Y  V  G  Q  A  S  R  D  L  G  K  G  F  R  Y  S  R  W  A  E  E  C  S  P  N  G  D  F  S  K  A  I  Q  N  K  I  Q  E  S  N  V  Y  I  L  S  D  G  A  R  *  V  A  Y  M  K  *  Y  P  K  Y  Q  C  R  K  I  A  P  A  G  L  G  I  I  L  S  I  L  S  Y  A  I  K  F  C  V  F  C  A  G  M  L  G  S  C  F  I  I  R  G  L  L  L  F  F  Q  S  S  S  I  T  E  L  F  P  Y  K  E  F  V  S  F  W  A  F  R  Q  L  Y  S  Q  *  S  V  F  V  S  F  Y  P  T  F  *  C  S  M  E  A  L  G  I  F  M  C  L  H  E  N  *  D  S  F  D  K  G  C  R  G  S  S  K  D  Q  C  N  L  I  L  *  V  L  Q  S  D  G  F  K  *  A  A  L  A  T  F  *  F  S  G  T  Y  A  M  S  C  T  C  R  D  S  S  P  P  S  Y  F  A  H  G  I  G  *  S </first_frame>
            <second_frame>  L  G  S  L  Q  Q  D  Y  P  S  S  P  S  D  Q  L  I  I  V  V  C  L  S  T  R  C  V  W  K  G  T  V  C  E  P  P  H  I  S  R  I  K  F  Y  G  I  T  D  M  P  L  G  R  F  L  R  D  R  L  F  D  E  :  N  F  R  C  P  S  C  E  M  P  P  E  A  H  V  R  C  Y  T  H  R  Q  G  S  L  T  I  S  V  K  K  L  P  E  C  I  L  P  G  E  Q  E  G  K  I  W  M  W  H  R  C  L  R  C  P  R  D  N  G  F  P  P  P  T  R  R  V  V  M  S  N  A  A  W  G  L  S  F  G  K  F  L  E  L  S  F  S  N  H  A  A  A  S  R  V  A  S  C  G  H  L  L  H  R  D  C  L  R  F  Y  G :   F  G  K  M  V  A  C  F  R  Y  A  P  V  H  V  Y  S  V  F  L  P  P  P  K  L  E  F  S  Y  D  N  Q  E  W  I  Q  K  E  G  D  E  :  V  R  R  R  A  N  A  L  F  A  E  V  S  K  V  L  H  V  K  L  E  K  F  S  V  D  S  S  L  K  A  P  K  T  S  E  Q  I  T  E  M  E  E  I  L  E  K  E  K  T  E  F  E  :  G  L  L  R  K  A  L  S  R  E  I  K  V  G  Q  P  T  V  D  I  L  E  I  N  Q  L  R  R  Q  L  V  F  H  A  Y  L  W  D  R  R  L  I  H  L  S  S  S  H  G  K  N  S  R  T  P  G  S  L  T  Q  L  K  E  K  P  L  S  S  S  E  E  L  P  E  R  T  A  I  L  R  P  G  K  S  L  G  S  Y  D  S  A  L  Q  N  V  K  T  E  I  T  S  S  E  G  R  H  G  Q  I  P  D  G  V  H  E  R  L  T  T  D  E  N  L  T  H  G  K  D  C  E  I  F  C  A  I  R  N  T  G  D  G  N  V  L  E  P  G  K  N  V  R  R  V  L  S  D  A  K  F  P  S  V  G  S  L  S  D  T  L  D  A  A  W  T  G  E  S  H  L  A  I  K  E  H  N  S  A  F  P  G  S  F  V  V  D  S  T  A  L  T  G  V  S  A  N  T  D  V  E  R  S  L  C  D  K  N  G  A  E  I  P  H  L  S  A  K  S  D  N  T  D  Y  L  T  W  A  T  A  H  F  S  N  F  Y  R  S  F  N  K  N  I  T  A  N  P  Q  Y  V  A  K  L  N  E  H  N  P  V  Y  I  L  S  F  S  E  L  L  H  Q  G  G  A  R  L  L  T  A  V  G  E  N  D  I  V  I  P  V  Y  D  D  E  P  T  S  I  I  S  Y  A  L  V  S  P  D  Y  R  N  Q  M  S  D  E  S  Q  N  L  K  E  N  H  K  F  S  A  S  L  S  F  L  D  S  L  N  L  L  P  L  H  S  V  D  G  V  V  S  E  S  P  R  S  F  G  S  T  N  E  S  M  S  S  G  Y  S  S  R  S  S  N  M  D  P  P  A  Y  I  N  A  L  H  A  R  I  S  F  S  D  D  G  P  P  G  K  V  K  Y  T  V  T  C  Y  Y  A  K  Q  F  E  T  L  R  K  S  C  C  P  N  E  S  D  F  I  R  S  L  S  R  C  K  K  W  G  A  Q  G  G  K  S  N  V  F  F  A  K  T  L  D  D  R  F  I  I  K  Q  V  T  K  T  E  L  E  S  F  I  K  F  A  P  A  Y  F  K  Y  L  S  D  S  I  A  S  G  S  P  T  C  L  A  K  I  L  G  I  Y  Q  :  V  T  S  K  H  L  K  G  G  K  E  S  R  M  D  V  L  V  M  E  N  L  L  F  K  R  N  I  T  R  L  Y  D  L  K  G  S  S  R  S  R  Y  N  P  D  S  S  G  S  N  K  V  L  L  D  Q  N  L  I  E  A  M  P  T  S  P  I  F  V  G  T  Q  A  K  R  L  L  Q  R  A  V  W  N  D  T  S  F  L  A  :  S  I  D  V  M  D  Y  S  L  L  V  G  V  D  E  K  K  Q  E  L  V  L  G  I  I  D  F  M  R  Q  Y  T  W  D  K  H  L  E  T  W  V  K  A  S  G  I  L  G  G  P  K  N  A  A  P  T  V  I  S  P  K  Q  Y  K  I  R  F  R  K  A  M  S  T  Y  F  L  M  V  P  D  E  W  P  T  *  S  D  T  P  S  I  S  A  E  K  L  P  R  P  V  L  V  *  F  Y  P  S  F  L  M  P  S  S  F  V  Y  F  V  Q  E  C  W  V  V  A  L  S  L  E  D  Y  F  C  F  S  K  V  V  V  L  Q  S  Y  F  H  T  K  N  L  L  V  S  G  R  S  A  S  C  T  V  N  S  R  S  S  F  L  F  I  P  H  S  D  A  Q  W  K  L  L  V  Y  S  C  V  Y  M  R  I  E  T  L  L  T  R  A  A  V  V  A  V  K  I  N  V  I  *  S  C  K  S  Y  N  R  M  V  S  N  K  L  H  S  R  H  F  D  F  Q  A  P  M  Q  *  V  V  L  V  A  I  L  R  L  L  P  I  L  H  T  V  *  V  D   </second_frame>
            <third_frame>   *  G  H  Y  S  K  I  I  L  P  H  L  P  T  N  *  L  L  *  Y  A  F  Q  H  A  V  F  G  K  E  L  F  V  S  H  L  I  F  L  E  *  N  F  M  G  L  P  I  C  L  W  D  G  F  Y  E  T  G  C  L  M  R :   I  L  G  V  P  H  V  K  C  L  Q  K  H  M  F  V  A  I  L  I  G  K  A  A  S  Q  F  L  *  R  S  Y  L  N  V  S  C  Q  E  N  R  K  E  R  Y  G  C  G  T  D  V  C  D  V  L  G  T  M  V  S  L  L  Q  P  G  G  *  *  C  L  M  L  L  G  G  C  H  L  G  N  F  W  N  S  V  F  Q  I  M  Q  Q  R  A  G  L  Q  V  V  V  I  F  F  T  G  T  V  S  G  S  M   : G  L  G  K  W  *  L  V  F  D  M  L  L  F  M  F  I  L  S  F  S  H  L  Q  N  S  N  L  A  M  I  I  R  S  G  F  R  K  K  V  M  R :   C  A  E  G  L  M  R  C  L  L  R  C  P  K  F  F  M  S  S  W  K  N  S  L  L  I  A  A  *  K  H  P  R  Q  V  S  R  S  Q  R  W  K  K  Y  *  R  R  R  K  L  S  L  R :   D  Y  Y  A  R  H  L  A  G  R  S  K  L  V  S  L  Q  L  T  S  L  R  *  I  N  *  E  G  S  W  F  F  M  L  I  Y  G  T  D  V  *  Y  I  F  P  V  L  M  V  K  I  P  E  L  R  A  V  *  H  N  *  R  R  N  P  S  A  L  V  R  N  F  L  K  G  L  Q  F  *  D  L  E  K  V  W  G  A  M  I  Q  L  F  R  M  *  R  L  K  *  H  L  V  K  E  D  M  V  R  F  L  M  G  F  T  K  D  *  L  L  M  R  T  *  L  T  G  K  T  A  R  F  S  V  L  *  E  I  Q  E  M  V  M  Y  W  N  L  E  K  M  S  D  V  F  F  Q  M  Q  S  S  R  L  W  E  V  Y  P  T  L  L  M  L  H  G  P  V  K  A  T  W  L  L  K  S  I  T  V  H  F  Q  V  R  S  L  *  I  L  L  L  *  L  E  F  Q  Q  I  Q  M  S  K  G  L  C  V  T  K  M  G  L  K  Y  L  I  Y  L  L  S  L  T  T  Q  I  T  *  P  G  Q  R  H  I  S  Q  I  S  I  V  R  S  T  R  I  S  Q  Q  I  H  N  M  L  L  N  *  M  S  I  I  L  F  I  S  C  R  L  A  N  C  Y  I  K  V  V  P  G  F  L  Q  L  L  V  K  M  T  L  L  F  Q  F  M  M  M  S  R  Q  V  S  S  H  M  H  L  S  H  Q  I  T  A  I  K  C  Q  M  N  L  K  T  *  K  K  I  T  S  F  Q  L  L  C  H  F  W  I  H  *  I  Y  F  R  F  T  L  W  M  E  *  F  R  N  L  Q  E  V  L  D  L  P  T  K  A  C  H  R  V  I  V  L  A  A  Q  T  W  I  H  Q  H  I  L  M  L  C  M  P  E  Y  L  S  Q  M  M  A  L  L  E  R  L  S  T  Q  S  P  A  I  M  R  S  N  S  R  P  *  E  S  L  V  A  P  M  N  Q  T  L  Y  V  P  L  A  D  A  K  N  G  V  L  R  V  G  R  A  M  F  S  L  P  K  P  W  T  T  D  L  S  S  S  R  *  R  R  Q  S  W  S  H  L  S  S  L  H  Q  L  T  L  S  I  Y  L  T  Q  *  L  V  G  A  Q  L  A  W  Q  R  F  W  G  S  T  R :   L  H  Q  S  I  S  K  V  G  K  N  Q  E  W  M  C  L  L  W  K  I  F  F  L  S  A  T  S  L  D  C  M  T  S  K  G  R  L  D  H  A  I  I  Q  I  Q  V  E  V  T  K  F  Y  L  I  R  T  *  L  K  Q  C  Q  L  L  R  F  L  W  E  R  K  L  S  G  C  C  R  E  L  C  G  M  I  L  H  F  *  R :   Q  *  M  *  W  I  T  H  Y  *  L  G  W  M  R  R  S  R  N  W  C  L  V  L  L  I  S  *  D  S  I  R  G  T  S  I  S  R  L  G  *  R  L  Q  V  F  *  V  G  R  R  M  Q  P  Q  R  *  F  L  Q  S  N  T  K  *  D  S  G  K  Q  C  L  H  T  F  *  W  C  Q  M  S  G  L  H  E  V  I  P  Q  V  S  V  Q  K  N  C  P  G  R  S  W  Y  N  F  I  H  P  F  L  C  H  Q  V  L  C  I  L  C  R  N  V  G  *  L  L  Y  H  *  R  I  T  F  V  F  P  K  *  *  Y  Y  R  V  I  S  I  Q  R  I  C  *  F  L  G  V  P  P  V  V  Q  S  I  V  G  L  R  F  F  L  S  H  I  L  M  L  N  G  S  S  W  Y  I  H  V  F  T  *  E  L  R  L  F  *  Q  G  L  P  W  *  Q  *  R  S  M  *  F  D  L  V  S  P  T  I  G  W  F  Q  I  S  C  T  R  D  I  L  I  F  R  H  L  C  N  E  L  Y  L  S  R  F  F  A  S  F  L  F  C  T  R  Y  R  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11990" stop="12175"/>
                    <exon start="12275" stop="12606"/>
                    <exon start="15316" stop="15439"/>
                    <exon start="15525" stop="15683"/>
                    <exon start="16813" stop="18315"/>
                    <exon start="23308" stop="23574"/>
                    <exon start="23990" stop="24244"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2823</number_coding_nucleotides>
                  <number_encoded_amino_acids>941</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGSLQQDYPSSPSDQLIIVVCLSTRCVWKGTVCEPPHISRIKFYGITDMPLGRFLRDRLFDENFRCPSCEMPPEAHVRCYTHRQGSLTISVKKLPECILPGEQEGKIWMWHRCLRCPRDNGFPPPTRRVVMSNAAWGLSFGKFLELSFSNHAAASRVASCGHLLHRDCLRFYGFGKMVACFRYAPVHVYSVFLPPPKLEFSYDNQEWIQKEGDEVRRRANALFAEVSKVLHVKLEKFSVDSSLKAPKTSEQITEMEEILEKEKTEFEGLLRKALSREIKVGQPTVDILEINQLRRQLVFHAYLWDRRLIHLSSSHGKNSRTPGSLTQLKEKPLSSSEELPERTAILRPGKSLGSYDSALQNVKTEITSSEGRHGQIPDGVHERLTTDENLTHGKDCEIFCAIRNTGDGNVLEPGKNVRRVLSDAKFPSVGSLSDTLDAAWTGESHLAIKEHNSAFPGSFVVDSTALTGVSANTDVERSLCDKNGAEIPHLSAKSDNTDYLTWATAHFSNFYRSFNKNITANPQYVAKLNEHNPVYILSFSELLHQGGARLLTAVGENDIVIPVYDDEPTSIISYALVSPDYRNQMSDESQNLKENHKFSASLSFLDSLNLLPLHSVDGVVSESPRSFGSTNESMSSGYSSRSSNMDPPAYINALHARISFSDDGPPGKVKYTVTCYYAKQFETLRKSCCPNESDFIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFAPAYFKYLSDSIASGSPTCLAKILGIYQVTSKHLKGGKESRMDVLVMENLLFKRNITRLYDLKGSSRSRYNPDSSGSNKVLLDQNLIEAMPTSPIFVGTQAKRLLQRAVWNDTSFLASIDVMDYSLLVGVDEKKQELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNAAPTVISPKQYKIRFRKAMSTYFLMVPDEWPT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24299" stop="24607"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYPSFLMPSSFVYFVQECWVVALSLEDYFCFSKVVVLQSYFHTKNLLVSGRSASCTVNSRSSFLFIPHSDAQWKLLVYSCVYMRIETLLTRAAVVAVKINVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22497" e_stop="22774"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22497" e_stop="22774" e_length="278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22497" stop="22774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604259" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</gDNA_template>
            <first_frame> I  L  L  E  K  S  N  N  L  M  K  C  C  L  F  I  V  H  L  R  T  S  *  L  T  F  S  P  S  H  C  Q  R  K  G  L  K  I  R  G  K  E  L  V  F  A  T  K  M  P  R  R  S  V  R  Q  L  T  F  F  Q  L  I  I  I  F  T  I  F  Y  L  F  Q  F  S  A  S  Y  F  L  V  D  L  V  N  F  S  C  S  T  F  *   </first_frame>
            <second_frame>  F  Y  *  R  S  P  T  I  *  *  S  V  A  C  S  L  F  I  *  E  L  A  S  *  H  F  H  Q  V  I  A  K  G  K  V  *  R  S  E  A  K  N  *  C  L  P  Q  K  C  Q  G  G  V  L  D  N  *  H  F  F  S  L  L  L  F  L  L  F  F  T  Y  F  N  L  V  L  P  I  F  *  *  T  *  S  T  L  V  A  Q  L  S  E  </second_frame>
            <third_frame>   F  I  R  E  V  Q  Q  F  N  E  V  L  L  V  H  C  S  S  E  N  *  L  A  D  I  F  T  K  S  L  P  K  E  R  F  E  D  P  R  Q  R  I  S  V  C  H  K  N  A  K  E  E  C  *  T  I  D  I  F  S  A  Y  Y  Y  F  Y  Y  F  L  L  I  S  I  *  C  F  L  F  S  S  R  L  S  Q  L  *  L  L  N  F  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22566" stop="22772"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTFSPSHCQRKGLKIRGKELVFATKMPRRSVRQLTFFQLIIIFTIFYLFQFSASYFLVDLVNFSCSTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="41048" PGL_stop="41431"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41048" e_stop="41431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="41048" e_stop="41431" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41048" stop="41431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602297" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAACGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGCCTTAACAAGAGAAAAGTCCTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATCCTTGAGTCATATATGAGGAAACACAACCTGGGGAATAGATATCCTATAACCACGTTCAAAGGGAAAAACTAATCATATGATGACTTTTTGTGAAAAATGCACTATTTTTCCCCTCCCTATGATGTGAGTGCATTGTTTCCTGTAGTTTGTGAAGGTTGAGTTGATAAAAACTCTTAATGAATATCTGTAGTTCGTATGGAT</gDNA_template>
            <first_frame> T  T  V  N  P  D  L  *  G  G  N  T  V  M  *  D  R  I  *  Q  M  V  P  L  M  L  I  M  S  N  L  V  I  I  L  Q  I  L  L  R  R  P  *  Q  E  K  S  P  G  A  H  R  G  G  W  D  *  S  L  Q  I  L  E  S  Y  M  R  K  H  N  L  G  N  R  Y  P  I  T  T  F  K  G  K  N  *  S  Y  D  D  F  L  *  K  M  H  Y  F  S  P  P  Y  D  V  S  A  L  F  P  V  V  C  E  G  *  V  D  K  N  S  *  *  I  S  V  V  R  M  D </first_frame>
            <second_frame>  Q  R  *  I  Q  T  Y  K  E  E  T  Q  *  C  K  I  V  F  D  K  W  Y  H  *  C  *  L  C  Q  I  L  *  *  S  C  R  S  S  Y  E  G  L  N  K  R  K  V  L  E  H  I  E  G  D  G  I  E  A  Y  K  S  L  S  H  I  *  G  N  T  T  W  G  I  D  I  L  *  P  R  S  K  G  K  T  N  H  M  M  T  F  C  E  K  C  T  I  F  P  L  P  M  M  *  V  H  C  F  L  *  F  V  K  V  E  L  I  K  T  L  N  E  Y  L  *  F  V  W   </second_frame>
            <third_frame>   N  G  K  S  R  P  I  R  R  K  H  S  N  V  R  S  Y  L  T  N  G  T  I  N  V  D  Y  V  K  S  C  D  N  L  A  D  P  L  T  K  A  L  T  R  E  K  S  W  S  T  S  R  G  M  G  L  K  P  T  N  P  *  V  I  Y  E  E  T  Q  P  G  E  *  I  S  Y  N  H  V  Q  R  E  K  L  I  I  *  *  L  F  V  K  N  A  L  F  F  P  S  L  *  C  E  C  I  V  S  C  S  L  *  R  L  S  *  *  K  L  L  M  N  I  C  S  S  Y  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0024O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="48836" PGL_stop="49506"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48836" e_stop="49506"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="48836" e_stop="49506" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48836" stop="49506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGATGATTAACCAGGTTCTTACTTATGTTAGCGGGTTATCTGATTAGGGACAGACACCTCCAGTGTTTTCTGCATCAGCACCTCAGGTTCCGGTAATACAACATGCAGCTGCTGTGGCTCCCCGCATGGATGCCTTATTGGAAGTAGGCATGTTTCCTCGATTGACTACAAGGTCTATAATGACGAGTAATCAACATGAACTTTTCACTAAATTCTTAAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGCTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAATGATTCGGTGTTGAGTTTGTGACCTACCAGTTTTAGGGGAATGCCAAAATGTGGTGGCAGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGAAGAAATATATACCCTAGACTTTGAGGGACAAGAAGAGAGATGAGTTCCTGAGCCTACTGTAAGGCAGGATGTTTGTTACTACTTATGAGGCTAAATTTCGGGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCTTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCTTACAGGTAGCTGCTGCAGCAAAATC</gDNA_template>
            <first_frame> E  M  I  N  Q  V  L  T  Y  V  S  G  L  S  D  *  G  Q  T  P  P  V  F  S  A  S  A  P  Q  V  P  V  I  Q  H  A  A  A  V  A  P  R  M  D  A  L  L  E  V  G  M  F  P  R  L  T  T  R  S  I  M  T  S  N  Q  H  E  L  F  T  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  A  D  C  H  E  L  L  H  K  M  D  I  V  E  *  F  G  V  E  F  V  T  Y  Q  F  *  G  N  A  K  M  W  W  Q  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  S  L  F  M  K  K  Y  I  P  *  T  L  R  D  K  K  R  D  E  F  L  S  L  L  *  G  R  M  F  V  T  T  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  L  F  V  K  G  L  R  S  D  L  Q  I  P  A  L  Q  V  A  A  A  A  K   </first_frame>
            <second_frame>  R  *  L  T  R  F  L  L  M  L  A  G  Y  L  I  R  D  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  *  Y  N  M  Q  L  L  W  L  P  A  W  M  P  Y  W  K  *  A  C  F  L  D  *  L  Q  G  L  *  *  R  V  I  N  M  N  F  S  L  N  S  *  S  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  S  C  Y  I  R  W  T  *  *  N  D  S  V  L  S  L  *  P  T  S  F  R  G  M  P  K  C  G  G  S  R  M  L  S  V  N  Q  H  R  H  H  L  *  L  G  H  H  S  L  A  Y  L  *  R  N  I  Y  P  R  L  *  G  T  R  R  E  M  S  S  *  A  Y  C  K  A  G  C  L  L  L  L  M  R  L  N  F  G  H  Y  P  G  M  P  P  S  F  A  S  V  H  K  S  G  F  A  F  L  *  K  D  *  G  Q  I  C  R  S  Q  P  Y  R  *  L  L  Q  Q  N  </second_frame>
            <third_frame>   D  D  *  P  G  S  Y  L  C  *  R  V  I  *  L  G  T  D  T  S  S  V  F  C  I  S  T  S  G  S  G  N  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  S  R  H  V  S  S  I  D  Y  K  V  Y  N  D  E  *  S  T  *  T  F  H  *  I  L  K  V  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  A  T  *  D  G  H  S  R  M  I  R  C  *  V  C  D  L  P  V  L  G  E  C  Q  N  V  V  A  V  V  C  *  V  S  T  S  T  G  T  T  Y  D  L  G  I  I  L  *  L  I  Y  E  E  I  Y  T  L  D  F  E  G  Q  E  E  R  *  V  P  E  P  T  V  R  Q  D  V  C  Y  Y  L  *  G  *  I  S  G  T  I  Q  V  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  C  E  R  I  E  V  R  F  A  D  P  S  L  T  G  S  C  C  S  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48884" stop="49156"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GQTPPVFSASAPQVPVIQHAAAVAPRMDALLEVGMFPRLTTRSIMTSNQHELFTKFLKLKPPVFKGAESEDAYDFLADCHELLHKMDIVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="51689" PGL_stop="51195"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51689" e_stop="51195"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="51689" e_stop="51195" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51689" stop="51195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGCATGCAATGTTCTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAAAGTGGAACTTCGTGCAATCGAACAATTTTTGAGATATAGAGTTTGGCTAGCTTCTCTGCATTGTGAGTCACCTTGGCCGGAATGAAGTGAGCAGACTTAGTTAATCTGTCAACAATTACCCAAATAGAATCAAACTTATCCAATGTCTTTGGAAGACCAACCACAAAATCCATTGCAATTCTTTCCCATTTCCATTCAGGAATGGGCATTTTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGCATTGGGCAACAAAATTAACAATGTCACGCTTCATTCGACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATATAATACATTGAACTATGAGCGTCTGTAAGAATAGTGTGAATCAAATTATCAACACGGGGCACACATAC</gDNA_template>
            <first_frame> F  S  M  Q  C  S  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  K  W  N  F  V  Q  S  N  N  F  *  D  I  E  F  G  *  L  L  C  I  V  S  H  L  G  R  N  E  V  S  R  L  S  *  S  V  N  N  Y  P  N  R  I  K  L  I  Q  C  L  W  K  T  N  H  K  I  H  C  N  S  F  P  F  P  F  R  N  G  H  F  L  K  C  S  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  G  N  K  I  N  N  V  T  L  H  S  T  P  P  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  I  I  H  *  T  M  S  V  C  K  N  S  V  N  Q  I  I  N  T  G  H  T  Y </first_frame>
            <second_frame>  S  A  C  N  V  L  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  S  C  N  R  T  I  F  E  I  *  S  L  A  S  F  S  A  L  *  V  T  L  A  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  I  E  S  N  L  S  N  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  F  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  W  A  T  K  L  T  M  S  R  F  I  R  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  *  Y  I  E  L  *  A  S  V  R  I  V  *  I  K  L  S  T  R  G  T  H   </second_frame>
            <third_frame>   Q  H  A  M  F  S  K  T  *  K  *  I  A  Y  L  Y  L  I  *  W  K  V  E  L  R  A  I  E  Q  F  L  R  Y  R  V  W  L  A  S  L  H  C  E  S  P  W  P  E  *  S  E  Q  T  *  L  I  C  Q  Q  L  P  K  *  N  Q  T  Y  P  M  S  L  E  D  Q  P  Q  N  P  L  Q  F  F  P  I  S  I  Q  E  W  A  F  S  E  V  F  L  Q  A  S  G  V  H  T  L  P  A  D  N  S  G  I  G  Q  Q  N  *  Q  C  H  A  S  F  D  S  T  K  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  Y  N  T  L  N  Y  E  R  L  *  E  *  C  E  S  N  Y  Q  H  G  A  H  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51521" stop="51297"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVNNYPNRIKLIQCLWKTNHKIHCNSFPFPFRNGHFLKCSSRPLVFILYLLTIRALGNKINNVTLHSTPPKMLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="62741" PGL_stop="63128"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62741" e_stop="63128"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="62741" e_stop="63128" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62741" stop="63128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602312" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATCAATGCTTTCATTTTTGAATTAAGTTGTGTCAAGTCAACTATGACAATCAAAGTAAAATGGAACAGGATGGGAGTAGTAAAACTAATCAAGCAGCGGTAAAATCTAGGGTACAACAAGAAATTTGAAAACCCAAAATCTGACACCAATGGCGCAAAGCCTTTCAATTTACTTACTAACTACCATCGTAAACTGAATGTTACCACAGAAACAAGAGTGATGCATTGATGATTCTTCAGATGACGATAAATCCAGAAGCCAAAACTTTAAGTTGTTCCTTCAATAAAGCTTTACATGTATAATCTATAATCACCGTAGGATCGATGTATATGAATTGAACTGGGTTAAAACCTTCCTCCATGCCACAAAGTTCCCAGAACCTCCA</gDNA_template>
            <first_frame> K  I  N  A  F  I  F  E  L  S  C  V  K  S  T  M  T  I  K  V  K  W  N  R  M  G  V  V  K  L  I  K  Q  R  *  N  L  G  Y  N  K  K  F  E  N  P  K  S  D  T  N  G  A  K  P  F  N  L  L  T  N  Y  H  R  K  L  N  V  T  T  E  T  R  V  M  H  *  *  F  F  R  *  R  *  I  Q  K  P  K  L  *  V  V  P  S  I  K  L  Y  M  Y  N  L  *  S  P  *  D  R  C  I  *  I  E  L  G  *  N  L  P  P  C  H  K  V  P  R  T  S  </first_frame>
            <second_frame>  R  S  M  L  S  F  L  N  *  V  V  S  S  Q  L  *  Q  S  K  *  N  G  T  G  W  E  *  *  N  *  S  S  S  G  K  I  *  G  T  T  R  N  L  K  T  Q  N  L  T  P  M  A  Q  S  L  S  I  Y  L  L  T  T  I  V  N  *  M  L  P  Q  K  Q  E  *  C  I  D  D  S  S  D  D  D  K  S  R  S  Q  N  F  K  L  F  L  Q  *  S  F  T  C  I  I  Y  N  H  R  R  I  D  V  Y  E  L  N  W  V  K  T  F  L  H  A  T  K  F  P  E  P  P </second_frame>
            <third_frame>   D  Q  C  F  H  F  *  I  K  L  C  Q  V  N  Y  D  N  Q  S  K  M  E  Q  D  G  S  S  K  T  N  Q  A  A  V  K  S  R  V  Q  Q  E  I  *  K  P  K  I  *  H  Q  W  R  K  A  F  Q  F  T  Y  *  L  P  S  *  T  E  C  Y  H  R  N  K  S  D  A  L  M  I  L  Q  M  T  I  N  P  E  A  K  T  L  S  C  S  F  N  K  A  L  H  V  *  S  I  I  T  V  G  S  M  Y  M  N  *  T  G  L  K  P  S  S  M  P  Q  S  S  Q  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0024O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="70743" PGL_stop="64542"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70743" e_stop="70482"/>
            <exon e_start="70316" e_stop="70254"/>
            <exon e_start="70172" e_stop="70071"/>
            <exon e_start="69902" e_stop="69798"/>
            <exon e_start="69687" e_stop="69595"/>
            <exon e_start="69057" e_stop="68969"/>
            <exon e_start="65152" e_stop="64933"/>
            <exon e_start="64562" e_stop="64542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.630" e_score="0.992"/>
          <exon-intron don_prob="0.997" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="70743" e_stop="70482" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.630">
            <gDNA_intron_boundary i_start="70481" i_stop="70317" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70316" e_stop="70254" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.924">
            <gDNA_intron_boundary i_start="70253" i_stop="70173" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70172" e_stop="70071" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70070" i_stop="69903" i_length="168"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69902" e_stop="69798" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="69797" i_stop="69688" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69687" e_stop="69595" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.931" acc_prob="0.906">
            <gDNA_intron_boundary i_start="69594" i_stop="69058" i_length="537"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69057" e_stop="68969" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.980" acc_prob="0.836">
            <gDNA_intron_boundary i_start="68968" i_stop="65153" i_length="3816"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="65152" e_stop="64933" e_length="220"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="64932" i_stop="64563" i_length="370"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="64562" e_stop="64542" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70743" stop="70482"/>
              <exon start="70316" stop="70254"/>
              <exon start="70172" stop="70071"/>
              <exon start="69902" stop="69798"/>
              <exon start="69687" stop="69595"/>
              <exon start="69057" stop="68969"/>
              <exon start="65152" stop="64933"/>
              <exon start="64562" stop="64542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTGCAATGTTGTACCATCCATGCTTTTCTTTGGTTATTTGTGAAGTTTACTATGTGGACATGTCTAGAGTCACAGGTTTCTTCTAGGGATATGACTTCTTTTATCAAGATTAAGTTCTATTGAGTTAAGCTTGTAAATCTATGCATAAGAGCACAAATAACCTTTGTGTTTCTCCTCTGCATCACTGAAGATATGTAGAGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAG : TCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTTAGAAGCACTTCTTCTCAG : GTTCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAG : CTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTG : ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG : GTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT : GTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATATCCTCAAAGTTGAAGTTCTAGGAGAACAGCTGAGCAGACGGAGGAAGTCATTGGCTGGGTTACCTCCAACGCTAGACAGGATTCTAGCTAATGTTCATGAACGATTAACTTTTCGTGCTCGCACCTATATCCGTGATGAG : GTTATCATGATAGCTTTCTCG</gDNA_template>
            <first_frame> H  C  N  V  V  P  S  M  L  F  F  G  Y  L  *  S  L  L  C  G  H  V  *  S  H  R  F  L  L  G  I  *  L  L  L  S  R  L  S  S  I  E  L  S  L  *  I  Y  A  *  E  H  K  *  P  L  C  F  S  S  A  S  L  K  I  C  R  E  *  *  P  T  I  C  R  V  Q  H  L  F  G  Q  V  S  T  T  S   : V  S  S  S  G  N  D  S  H  S  R  S  F  R  S  *  K  H  F  F  S   : G  S  G  C  N  K  K  Q  R  W  *  Q  D  I  F  C  R  G  Y  R  A  I  Y  N  I  C  T  I  Q  G  C  S  K  *   : A  *  A  Y  P  G  G  N  *  K  Q  N  T  *  K  R  V  Y  S  T  S  *  R  M  P  Q  T  L  L  R  T  A  P  F  L   : D  K  R  Y  S  A  T  A  D  L  *  I  F  *  E  R  S  I  V  V  F  N  *  I  W  M  C  I  F  N  A   : G  V  S  A  G  A  S  T  L  Q  S  L  L  S  I  I  F  R  G  H  F  E  F  D  S  S  C  R  S  S  :  V  Y  F  P  L  *  Y  I  A  S  *  T  Y  S  R  N  K  P  G  C  S  L  *  T  G  *  Y  P  Q  S  *  S  S  R  R  T  A  E  Q  T  E  E  V  I  G  W  V  T  S  N  A  R  Q  D  S  S  *  C  S  *  T  I  N  F  S  C  S  H  L  Y  P  *  *   : G  Y  H  D  S  F  L  </first_frame>
            <second_frame>  T  A  M  L  Y  H  P  C  F  S  L  V  I  C  E  V  Y  Y  V  D  M  S  R  V  T  G  F  F  *  G  Y  D  F  F  Y  Q  D  *  V  L  L  S  *  A  C  K  S  M  H  K  S  T  N  N  L  C  V  S  P  L  H  H  *  R  Y  V  E  S  S  N  P  Q  Y  A  E  C  S  I  Y  L  V  K  F  R  Q  L  Q  :  S  R  A  L  G  M  I  R  T  H  V  L  S  V  L  R  S  T  S  S  Q  :  V  Q  A  A  I  R  S  S  G  G  N  K  T  S  F  A  E  G  I  E  P  S  I  I  Y  V  R  F  K  A  A  A  N  E  :  L  K  P  I  L  E  E  I  E  S  R  T  P  R  K  E  Y  I  Q  L  L  E  E  C  H  K  L  Y  C  E  Q  R  L  S  L  :  I  R  G  I  V  Q  Q  R  I  S  E  F  S  R  K  E  A  L  S  S  L  T  R  S  G  C  A  Y  L  M  Q  :  V  C  Q  L  E  H  Q  L  F  N  H  F  F  P  S  S  S  E  D  I  S  S  L  T  P  L  V  D  P  L :   C  T  F  L  Y  D  T  S  R  P  K  L  I  H  E  T  N  L  D  V  L  C  E  L  V  N  I  L  K  V  E  V  L  G  E  Q  L  S  R  R  R  K  S  L  A  G  L  P  P  T  L  D  R  I  L  A  N  V  H  E  R  L  T  F  R  A  R  T  Y  I  R  D  E  :  V  I  M  I  A  F  S </second_frame>
            <third_frame>   L  Q  C  C  T  I  H  A  F  L  W  L  F  V  K  F  T  M  W  T  C  L  E  S  Q  V  S  S  R  D  M  T  S  F  I  K  I  K  F  Y  *  V  K  L  V  N  L  C  I  R  A  Q  I  T  F  V  F  L  L  C  I  T  E  D  M  *  R  V  V  T  H  N  M  Q  S  A  A  F  I  W  S  S  F  D  N  F  S :   L  E  L  W  E  *  F  A  L  T  F  F  P  F  L  E  A  L  L  L  R :   F  R  L  Q  *  E  A  A  V  V  T  R  H  L  L  P  R  V  *  S  H  L  *  Y  M  Y  D  S  R  L  Q  Q  M  S :   L  S  L  S  W  R  K  L  K  A  E  H  L  E  K  S  I  F  N  F  L  K  N  A  T  N  S  I  A  N  S  A  F  P  * :   *  E  V  *  C  N  S  G  S  L  N  F  L  G  K  K  H  C  R  L  *  L  D  L  D  V  H  I  *  C  R :   C  V  S  W  S  I  N  S  S  I  T  S  F  H  H  L  Q  R  T  F  R  V  *  L  L  L  *  I  L   : C  V  L  S  S  M  I  H  R  V  L  N  L  F  T  K  Q  T  W  M  F  F  V  N  W  L  I  S  S  K  L  K  F  *  E  N  S  *  A  D  G  G  S  H  W  L  G  Y  L  Q  R  *  T  G  F  *  L  M  F  M  N  D  *  L  F  V  L  A  P  I  S  V  M  R :   L  S  *  *  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70553" stop="70482"/>
                    <exon start="70316" stop="70254"/>
                    <exon start="70172" stop="70071"/>
                    <exon start="69902" stop="69798"/>
                    <exon start="69687" stop="69595"/>
                    <exon start="69057" stop="68969"/>
                    <exon start="65152" stop="64933"/>
                    <exon start="64562" stop="64542"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYVESSNPQYAECSIYLVKFRQLQSRALGMIRTHVLSVLRSTSSQVQAAIRSSGGNKTSFAEGIEPSIIYVRFKAAANELKPILEEIESRTPRKEYIQLLEECHKLYCEQRLSLIRGIVQQRISEFSRKEALSSLTRSGCAYLMQVCQLEHQLFNHFFPSSSEDISSLTPLVDPLCTFLYDTSRPKLIHETNLDVLCELVNILKVEVLGEQLSRRRKSLAGLPPTLDRILANVHERLTFRARTYIRDEVIMIAFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="80249" PGL_stop="70802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80249" e_stop="79809"/>
            <exon e_start="74678" e_stop="74595"/>
            <exon e_start="74510" e_stop="74409"/>
            <exon e_start="72802" e_stop="72758"/>
            <exon e_start="72640" e_stop="72566"/>
            <exon e_start="72447" e_stop="72267"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.847" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.917" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80249" e_stop="79809" e_length="441"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.986">
            <gDNA_intron_boundary i_start="79808" i_stop="74679" i_length="5130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74678" e_stop="74595" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="74594" i_stop="74511" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74510" e_stop="74409" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.997">
            <gDNA_intron_boundary i_start="74408" i_stop="72803" i_length="1606"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72802" e_stop="72758" e_length="45"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.847">
            <gDNA_intron_boundary i_start="72757" i_stop="72641" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72640" e_stop="72566" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.914" acc_prob="0.917">
            <gDNA_intron_boundary i_start="72565" i_stop="72448" i_length="118"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="72447" e_stop="72267" e_length="181"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80249" stop="79809"/>
              <exon start="74678" stop="74595"/>
              <exon start="74510" stop="74409"/>
              <exon start="72802" stop="72758"/>
              <exon start="72640" stop="72566"/>
              <exon start="72447" stop="72267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570486" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTAATTTTCTCCAGTTTTGGTCTATGTTGAATTTTGAAGAAAAGGAACGTCGTTACTGTAATTTTCATATGAGCGGAAAACCCAAAGCTAAGCCAGAGGATCATCCCAGATCTCCAACTTCATCGTTCAAATCACCCTTTTTTTCAACTTCGAAGTCGAAATTGCTTCCATTGAAGCTCCAAAATCCATATGGTGATGGCTACAATCATCTGTAGTATTGATTGTTTTGGTATCAGTAATTGACTAGTTACTACACAGTCCGTTTCCCCCTCATTTTTCATCAATTCTGTTTCGTTTTACTTTTTACACGAACAGAAACAGTTGCAAAGTAGTGGAAGAAGAGAGTGATGATAATACTATGGCGGCAACGACAAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAG : AATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTG : GACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAGGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAG : TTTTATAAGTGGTTCGCGGATCTTGAAGCAGCCATGAAATTAGAG : TCTGAAGAAAAATATCAGCATTATGCCAGCACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG : GTGGATGAAACACTTGACTTGTTCAATGAGTTGCAATTGCAGCATCAAGCAGTGGCAACAAAGACAAGAACTCTTCATGATGCGTGCGATAGACTGGTGTGTCAACCCATTTCTCTTAGCATCTGTGGTTACTTAGCTGTAGATTGTACTTTTCTCTTTCATTCTGTTCAAAATTCTGAGG</gDNA_template>
            <first_frame> I  *  F  S  P  V  L  V  Y  V  E  F  *  R  K  G  T  S  L  L  *  F  S  Y  E  R  K  T  Q  S  *  A  R  G  S  S  Q  I  S  N  F  I  V  Q  I  T  L  F  F  N  F  E  V  E  I  A  S  I  E  A  P  K  S  I  W  *  W  L  Q  S  S  V  V  L  I  V  L  V  S  V  I  D  *  L  L  H  S  P  F  P  P  H  F  S  S  I  L  F  R  F  T  F  Y  T  N  R  N  S  C  K  V  V  E  E  E  S  D  D  N  T  M  A  A  T  T  R  P  G  V  L  K  S  E  A  V  S  K  G  Y  N  F  A  S  T  W  E  Q  :  N  A  L  L  T  E  Q  Q  S  A  A  I  Q  A  L  S  H  A  V  A  E  R  P  F  P  S  N  L  :  D  Q  V  S  G  H  D  N  S  L  S  V  S  T  K  L  S  S  L  E  D  S  G  A  I  E  A  V  L  V  N  T  N  Q  :  F  Y  K  W  F  A  D  L  E  A  A  M  K  L  E  :  S  E  E  K  Y  Q  H  Y  A  S  T  L  T  E  Q  I  Q  T  C  D  S  I  L  H  Q  :  V  D  E  T  L  D  L  F  N  E  L  Q  L  Q  H  Q  A  V  A  T  K  T  R  T  L  H  D  A  C  D  R  L  V  C  Q  P  I  S  L  S  I  C  G  Y  L  A  V  D  C  T  F  L  F  H  S  V  Q  N  S  E  </first_frame>
            <second_frame>  F  N  F  L  Q  F  W  S  M  L  N  F  E  E  K  E  R  R  Y  C  N  F  H  M  S  G  K  P  K  A  K  P  E  D  H  P  R  S  P  T  S  S  F  K  S  P  F  F  S  T  S  K  S  K  L  L  P  L  K  L  Q  N  P  Y  G  D  G  Y  N  H  L  *  Y  *  L  F  W  Y  Q  *  L  T  S  Y  Y  T  V  R  F  P  L  I  F  H  Q  F  C  F  V  L  L  F  T  R  T  E  T  V  A  K  *  W  K  K  R  V  M  I  I  L  W  R  Q  R  Q  G  R  G  F  S  S  P  K  L  F  P  K  A  I  I  S  L  L  L  G  N  R :   M  L  C  *  Q  S  N  N  Q  Q  P  Y  K  H  F  P  M  Q  L  P  R  D  L  S  R  P  I  W :   T  K  F  L  D  M  I  T  A  S  L  F  Q  Q  S  L  V  L  *  R  I  Q  G  P  L  K  Q  S  *  *  I  Q  I  S :   F  I  S  G  S  R  I  L  K  Q  P  *  N  *  S :   L  K  K  N  I  S  I  M  P  A  P  *  Q  S  R  F  R  P  A  I  V  Y  F  T  R :   W  M  K  H  L  T  C  S  M  S  C  N  C  S  I  K  Q  W  Q  Q  R  Q  E  L  F  M  M  R  A  I  D  W  C  V  N  P  F  L  L  A  S  V  V  T  *  L  *  I  V  L  F  S  F  I  L  F  K  I  L  R </second_frame>
            <third_frame>   L  I  F  S  S  F  G  L  C  *  I  L  K  K  R  N  V  V  T  V  I  F  I  *  A  E  N  P  K  L  S  Q  R  I  I  P  D  L  Q  L  H  R  S  N  H  P  F  F  Q  L  R  S  R  N  C  F  H  *  S  S  K  I  H  M  V  M  A  T  I  I  C  S  I  D  C  F  G  I  S  N  *  L  V  T  T  Q  S  V  S  P  S  F  F  I  N  S  V  S  F  Y  F  L  H  E  Q  K  Q  L  Q  S  S  G  R  R  E  *  *  *  Y  Y  G  G  N  D  K  A  G  G  S  Q  V  R  S  C  F  Q  R  L  *  F  R  F  Y  L  G  T   : E  C  S  V  N  R  A  T  I  S  S  H  T  S  T  F  P  C  S  C  R  E  T  F  P  V  Q  F   : G  P  S  F  W  T  *  *  Q  P  L  C  F  N  K  A  *  F  S  R  G  F  R  G  H  *  S  S  P  S  E  Y  K  S   : V  L  *  V  V  R  G  S  *  S  S  H  E  I  R   : V  *  R  K  I  S  A  L  C  Q  H  L  N  R  A  D  S  D  L  R  *  Y  T  S  P   : G  G  *  N  T  *  L  V  Q  *  V  A  I  A  A  S  S  S  G  N  K  D  K  N  S  S  *  C  V  R  *  T  G  V  S  T  H  F  S  *  H  L  W  L  L  S  C  R  L  Y  F  S  L  S  F  C  S  K  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80000" stop="79809"/>
                    <exon start="74678" stop="74595"/>
                    <exon start="74510" stop="74409"/>
                    <exon start="72802" stop="72758"/>
                    <exon start="72640" stop="72566"/>
                    <exon start="72447" stop="72268"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLHSPFPPHFSSILFRFTFYTNRNSCKVVEEESDDNTMAATTRPGVLKSEAVSKGYNFASTWEQNALLTEQQSAAIQALSHAVAERPFPSNLDQVSGHDNSLSVSTKLSSLEDSGAIEAVLVNTNQFYKWFADLEAAMKLESEEKYQHYASTLTEQIQTCDSILHQVDETLDLFNELQLQHQAVATKTRTLHDACDRLVCQPISLSICGYLAVDCTFLFHSVQNSE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80248" stop="80033"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNFLQFWSMLNFEEKERRYCNFHMSGKPKAKPEDHPRSPTSSFKSPFFSTSKSKLLPLKLQNPYGDGYNHL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71435" e_stop="70965"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="71435" e_stop="70965" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71435" stop="70965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603220" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTAAATAAAGCTTTGGTTCTAGATTGTTTTCTTCCTCATGTTACAAATGAGTCACCCAAAGCTATTCTGTCTTGGCTTTTCCAATCTAGTTCTTTTGGATTATTTTGATGTTCTTGCTTAGCGAGTTATTTATTTAAGATGATTTTTTTAATCTCGTCTTTTGGTCAACTCTTCTTTCTCCTATTTATGTGCTTGGTGGTTTCTAAAGGAAAACTTTTTCACTTGTGAGATTGAGAATGAGAGTTCCTGTTTTAATTTTTTTTTTTTGGAACTGAGAGTTCCTTTTTTTAAATTCCTTAAAGAGGAATAGCTTTTCACTCTCTACTGTACATATTCTTGATTTAATCATGACCATTAGACTAAAATTTTCTAATTCCTTTTTGTTTAATTACATCTAATTGGTGTATCAACTTGATTTGTCTTGTGCTAAATTTTCTCTTCAAGTCCTGCTCTTCTCCTACTTGAACTT</gDNA_template>
            <first_frame> L  *  I  K  L  W  F  *  I  V  F  F  L  M  L  Q  M  S  H  P  K  L  F  C  L  G  F  S  N  L  V  L  L  D  Y  F  D  V  L  A  *  R  V  I  Y  L  R  *  F  F  *  S  R  L  L  V  N  S  S  F  S  Y  L  C  A  W  W  F  L  K  E  N  F  F  T  C  E  I  E  N  E  S  S  C  F  N  F  F  F  L  E  L  R  V  P  F  F  K  F  L  K  E  E  *  L  F  T  L  Y  C  T  Y  S  *  F  N  H  D  H  *  T  K  I  F  *  F  L  F  V  *  L  H  L  I  G  V  S  T  *  F  V  L  C  *  I  F  S  S  S  P  A  L  L  L  L  E  L </first_frame>
            <second_frame>  C  K  *  S  F  G  S  R  L  F  S  S  S  C  Y  K  *  V  T  Q  S  Y  S  V  L  A  F  P  I  *  F  F  W  I  I  L  M  F  L  L  S  E  L  F  I  *  D  D  F  F  N  L  V  F  W  S  T  L  L  S  P  I  Y  V  L  G  G  F  *  R  K  T  F  S  L  V  R  L  R  M  R  V  P  V  L  I  F  F  F  W  N  *  E  F  L  F  L  N  S  L  K  R  N  S  F  S  L  S  T  V  H  I  L  D  L  I  M  T  I  R  L  K  F  S  N  S  F  L  F  N  Y  I  *  L  V  Y  Q  L  D  L  S  C  A  K  F  S  L  Q  V  L  L  F  S  Y  L  N   </second_frame>
            <third_frame>   V  N  K  A  L  V  L  D  C  F  L  P  H  V  T  N  E  S  P  K  A  I  L  S  W  L  F  Q  S  S  S  F  G  L  F  *  C  S  C  L  A  S  Y  L  F  K  M  I  F  L  I  S  S  F  G  Q  L  F  F  L  L  F  M  C  L  V  V  S  K  G  K  L  F  H  L  *  D  *  E  *  E  F  L  F  *  F  F  F  F  G  T  E  S  S  F  F  *  I  P  *  R  G  I  A  F  H  S  L  L  Y  I  F  L  I  *  S  *  P  L  D  *  N  F  L  I  P  F  C  L  I  T  S  N  W  C  I  N  L  I  C  L  V  L  N  F  L  F  K  S  C  S  S  P  T  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0024O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="73855" e_stop="73163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="73855" e_stop="73163" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73855" stop="73163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599996" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACAAAGCCCCATCCATTGTTTTGGCTTACTAGATAATATGCGTCTCATTTGTTCCGGATGATTGTCATTAACTAGAGAGGGTAAACCTTATGCCGGGCAAAGGATGACTAGAACTTACATTTAGTGAGAAATGACCCTGATACTCAATGTCTTCTGGGGTAGAAATACCTAAATTGCATGTGATGGGTCAAGGGATGATGACCATAGTGGCTGTTTATGGCCTTGATCCTGCCTATTTTAGTGGAGCAGGTTTTGTGTCTATATATCAGAAAGACATGCAAAAGAAATTTCTTCTAGAACTCTCCTCCATATTTGAACTTTGGTAGCCCTAGAAGTTATTTTCTTTTTCTCCTTTTGTTTTATCCTAATGTCTTTTGATAAGGAGATTTTCGGATCATTATGTTATTATATACCTCATCACTAAAAAAGAGTTCTCTGTGAAAGACAACCAACAATTTATACACACAATAAACTTGTAAGTGCACAAAAAATTAACAATAGGAGGTTATTTCTCAACTGTACGAAATCATAATCCACCCCTTTCAAAAGACCTCCTACTTCTCTCCTTCTAAAGAACCACTGGAGCTAACGGAGCTACATCCCATTTCACTTCTTCTCCTCTTTATTGTAAAGCCCCCCACTCCCCCAGCATTTGCATGATTCTTAAATTTCAAAAATGTTAAAAGTAAGTG</gDNA_template>
            <first_frame> Y  K  A  P  S  I  V  L  A  Y  *  I  I  C  V  S  F  V  P  D  D  C  H  *  L  E  R  V  N  L  M  P  G  K  G  *  L  E  L  T  F  S  E  K  *  P  *  Y  S  M  S  S  G  V  E  I  P  K  L  H  V  M  G  Q  G  M  M  T  I  V  A  V  Y  G  L  D  P  A  Y  F  S  G  A  G  F  V  S  I  Y  Q  K  D  M  Q  K  K  F  L  L  E  L  S  S  I  F  E  L  W  *  P  *  K  L  F  S  F  S  P  F  V  L  S  *  C  L  L  I  R  R  F  S  D  H  Y  V  I  I  Y  L  I  T  K  K  E  F  S  V  K  D  N  Q  Q  F  I  H  T  I  N  L  *  V  H  K  K  L  T  I  G  G  Y  F  S  T  V  R  N  H  N  P  P  L  S  K  D  L  L  L  L  S  F  *  R  T  T  G  A  N  G  A  T  S  H  F  T  S  S  P  L  Y  C  K  A  P  H  S  P  S  I  C  M  I  L  K  F  Q  K  C  *  K  *  V </first_frame>
            <second_frame>  T  K  P  H  P  L  F  W  L  T  R  *  Y  A  S  H  L  F  R  M  I  V  I  N  *  R  G  *  T  L  C  R  A  K  D  D  *  N  L  H  L  V  R  N  D  P  D  T  Q  C  L  L  G  *  K  Y  L  N  C  M  *  W  V  K  G  *  *  P  *  W  L  F  M  A  L  I  L  P  I  L  V  E  Q  V  L  C  L  Y  I  R  K  T  C  K  R  N  F  F  *  N  S  P  P  Y  L  N  F  G  S  P  R  S  Y  F  L  F  L  L  L  F  Y  P  N  V  F  *  *  G  D  F  R  I  I  M  L  L  Y  T  S  S  L  K  K  S  S  L  *  K  T  T  N  N  L  Y  T  Q  *  T  C  K  C  T  K  N  *  Q  *  E  V  I  S  Q  L  Y  E  I  I  I  H  P  F  Q  K  T  S  Y  F  S  P  S  K  E  P  L  E  L  T  E  L  H  P  I  S  L  L  L  L  F  I  V  K  P  P  T  P  P  A  F  A  *  F  L  N  F  K  N  V  K  S  K   </second_frame>
            <third_frame>   Q  S  P  I  H  C  F  G  L  L  D  N  M  R  L  I  C  S  G  *  L  S  L  T  R  E  G  K  P  Y  A  G  Q  R  M  T  R  T  Y  I  *  *  E  M  T  L  I  L  N  V  F  W  G  R  N  T  *  I  A  C  D  G  S  R  D  D  D  H  S  G  C  L  W  P  *  S  C  L  F  *  W  S  R  F  C  V  Y  I  S  E  R  H  A  K  E  I  S  S  R  T  L  L  H  I  *  T  L  V  A  L  E  V  I  F  F  F  S  F  C  F  I  L  M  S  F  D  K  E  I  F  G  S  L  C  Y  Y  I  P  H  H  *  K  R  V  L  C  E  R  Q  P  T  I  Y  T  H  N  K  L  V  S  A  Q  K  I  N  N  R  R  L  F  L  N  C  T  K  S  *  S  T  P  F  K  R  P  P  T  S  L  L  L  K  N  H  W  S  *  R  S  Y  I  P  F  H  F  F  S  S  L  L  *  S  P  P  L  P  Q  H  L  H  D  S  *  I  S  K  M  L  K  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0024O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="79875" e_stop="79809"/>
            <exon e_start="74678" e_stop="74595"/>
            <exon e_start="74510" e_stop="74409"/>
            <exon e_start="72802" e_stop="72758"/>
            <exon e_start="72640" e_stop="72566"/>
            <exon e_start="72447" e_stop="72352"/>
            <exon e_start="71823" e_stop="71746"/>
            <exon e_start="70882" e_stop="70802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.986" e_score="0.866"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.929"/>
          <exon-intron don_prob="0.980" acc_prob="0.997" e_score="0.892"/>
          <exon-intron don_prob="0.959" acc_prob="0.847" e_score="0.889"/>
          <exon-intron don_prob="0.914" acc_prob="0.917" e_score="0.960"/>
          <exon-intron don_prob="0.832" acc_prob="0.926" e_score="0.917"/>
          <exon-intron don_prob="0.920" acc_prob="0.998" e_score="0.974"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.866">
            <gDNA_exon_boundary e_start="79875" e_stop="79809" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.986">
            <gDNA_intron_boundary i_start="79808" i_stop="74679" i_length="5130"/>
          </intron>
          <exon e_serial="2" e_score="0.929">
            <gDNA_exon_boundary e_start="74678" e_stop="74595" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="74594" i_stop="74511" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.892">
            <gDNA_exon_boundary e_start="74510" e_stop="74409" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.997">
            <gDNA_intron_boundary i_start="74408" i_stop="72803" i_length="1606"/>
          </intron>
          <exon e_serial="4" e_score="0.889">
            <gDNA_exon_boundary e_start="72802" e_stop="72758" e_length="45"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.847">
            <gDNA_intron_boundary i_start="72757" i_stop="72641" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="0.960">
            <gDNA_exon_boundary e_start="72640" e_stop="72566" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.914" acc_prob="0.917">
            <gDNA_intron_boundary i_start="72565" i_stop="72448" i_length="118"/>
          </intron>
          <exon e_serial="6" e_score="0.917">
            <gDNA_exon_boundary e_start="72447" e_stop="72352" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.832" acc_prob="0.926">
            <gDNA_intron_boundary i_start="72351" i_stop="71824" i_length="528"/>
          </intron>
          <exon e_serial="7" e_score="0.974">
            <gDNA_exon_boundary e_start="71823" e_stop="71746" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.920" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71745" i_stop="70883" i_length="863"/>
          </intron>
          <exon e_serial="8" e_score="0.901">
            <gDNA_exon_boundary e_start="70882" e_stop="70802" e_length="81"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79875" stop="79809"/>
              <exon start="74678" stop="74595"/>
              <exon start="74510" stop="74409"/>
              <exon start="72802" stop="72758"/>
              <exon start="72640" stop="72566"/>
              <exon start="72447" stop="72352"/>
              <exon start="71823" stop="71746"/>
              <exon start="70882" stop="70802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGCCGGGGGTTCTCAAGTCCGAAGCTGTTTCCAAAGGCTATAATTTCGCTTCTACTTGGGAACAG : AATGCTCTGTTAACAGAGCAACAATCAGCAGCCATACAAGCACTTTCCCATGCAGTTGCCGAGAGACCTTTCCCGTCCAATTTG : GACCAAGTTTCTGGACATGATAACAGCCTCTCTGTTTCAACAAAGCTTAGTTCTCTAGAGGATTCAGGGGCCATTGAAGCAGTCCTAGTGAATACAAATCAG : TTTTATAAGTGGTTCGCGGATCTTGAAGCAGCCATGAAATTAGAG : TCTGAAGAAAAATATCAGCATTATGCCAGCACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG : GTGGATGAAACACTTGACTTGTTCAATGAGTTGCAATTGCAGCATCAAGCAGTGGCAACAAAGACAAGAACTCTTCATGATGCGTGCGATAGACTG : CTTTTGGAGAAGCAGAAAATAATTGAGTTTGCAGAATCACTTCACAATAAGCTCAATTACTTTGATGAATTGGAGAAT : GTTGCTACCACTTTTTATTCTCCTAGCATGAGCGTTGGTAGTACAAATTTTCTTCCATTGCTAAAGAGACTTGATGAGTGC</gDNA_template>
            <first_frame> K  A  G  G  S  Q  V  R  S  C  F  Q  R  L  *  F  R  F  Y  L  G  T   : E  C  S  V  N  R  A  T  I  S  S  H  T  S  T  F  P  C  S  C  R  E  T  F  P  V  Q  F   : G  P  S  F  W  T  *  *  Q  P  L  C  F  N  K  A  *  F  S  R  G  F  R  G  H  *  S  S  P  S  E  Y  K  S   : V  L  *  V  V  R  G  S  *  S  S  H  E  I  R   : V  *  R  K  I  S  A  L  C  Q  H  L  N  R  A  D  S  D  L  R  *  Y  T  S  P   : G  G  *  N  T  *  L  V  Q  *  V  A  I  A  A  S  S  S  G  N  K  D  K  N  S  S  *  C  V  R  *  T   : A  F  G  E  A  E  N  N  *  V  C  R  I  T  S  Q  *  A  Q  L  L  *  *  I  G  E   : C  C  Y  H  F  L  F  S  *  H  E  R  W  *  Y  K  F  S  S  I  A  K  E  T  *  *  V  </first_frame>
            <second_frame>  R  P  G  V  L  K  S  E  A  V  S  K  G  Y  N  F  A  S  T  W  E  Q  :  N  A  L  L  T  E  Q  Q  S  A  A  I  Q  A  L  S  H  A  V  A  E  R  P  F  P  S  N  L  :  D  Q  V  S  G  H  D  N  S  L  S  V  S  T  K  L  S  S  L  E  D  S  G  A  I  E  A  V  L  V  N  T  N  Q  :  F  Y  K  W  F  A  D  L  E  A  A  M  K  L  E  :  S  E  E  K  Y  Q  H  Y  A  S  T  L  T  E  Q  I  Q  T  C  D  S  I  L  H  Q  :  V  D  E  T  L  D  L  F  N  E  L  Q  L  Q  H  Q  A  V  A  T  K  T  R  T  L  H  D  A  C  D  R  L  :  L  L  E  K  Q  K  I  I  E  F  A  E  S  L  H  N  K  L  N  Y  F  D  E  L  E  N  :  V  A  T  T  F  Y  S  P  S  M  S  V  G  S  T  N  F  L  P  L  L  K  R  L  D  E  C </second_frame>
            <third_frame>   G  R  G  F  S  S  P  K  L  F  P  K  A  I  I  S  L  L  L  G  N  R :   M  L  C  *  Q  S  N  N  Q  Q  P  Y  K  H  F  P  M  Q  L  P  R  D  L  S  R  P  I  W :   T  K  F  L  D  M  I  T  A  S  L  F  Q  Q  S  L  V  L  *  R  I  Q  G  P  L  K  Q  S  *  *  I  Q  I  S :   F  I  S  G  S  R  I  L  K  Q  P  *  N  *  S :   L  K  K  N  I  S  I  M  P  A  P  *  Q  S  R  F  R  P  A  I  V  Y  F  T  R :   W  M  K  H  L  T  C  S  M  S  C  N  C  S  I  K  Q  W  Q  Q  R  Q  E  L  F  M  M  R  A  I  D  C :   F  W  R  S  R  K  *  L  S  L  Q  N  H  F  T  I  S  S  I  T  L  M  N  W  R  M :   L  L  P  L  F  I  L  L  A  *  A  L  V  V  Q  I  F  F  H  C  *  R  D  L  M  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79874" stop="79809"/>
                    <exon start="74678" stop="74595"/>
                    <exon start="74510" stop="74409"/>
                    <exon start="72802" stop="72758"/>
                    <exon start="72640" stop="72566"/>
                    <exon start="72447" stop="72352"/>
                    <exon start="71823" stop="71746"/>
                    <exon start="70882" stop="70802"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPGVLKSEAVSKGYNFASTWEQNALLTEQQSAAIQALSHAVAERPFPSNLDQVSGHDNSLSVSTKLSSLEDSGAIEAVLVNTNQFYKWFADLEAAMKLESEEKYQHYASTLTEQIQTCDSILHQVDETLDLFNELQLQHQAVATKTRTLHDACDRLLLEKQKIIEFAESLHNKLNYFDELENVATTFYSPSMSVGSTNFLPLLKRLDEC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="92753" PGL_stop="89219"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92753" e_stop="92589"/>
            <exon e_start="91309" e_stop="91165"/>
            <exon e_start="91034" e_stop="90924"/>
            <exon e_start="90839" e_stop="90748"/>
            <exon e_start="90656" e_stop="90562"/>
            <exon e_start="90477" e_stop="90364"/>
            <exon e_start="89941" e_stop="89812"/>
            <exon e_start="89660" e_stop="89539"/>
            <exon e_start="89457" e_stop="89219"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.021" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.172" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92753" e_stop="92589" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.021">
            <gDNA_intron_boundary i_start="92588" i_stop="91310" i_length="1279"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91309" e_stop="91165" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="91164" i_stop="91035" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91034" e_stop="90924" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.894" acc_prob="0.172">
            <gDNA_intron_boundary i_start="90923" i_stop="90840" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90839" e_stop="90748" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.954" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90747" i_stop="90657" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90656" e_stop="90562" e_length="95"/>
          </exon>
          <intron i_serial="5" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90561" i_stop="90478" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90477" e_stop="90364" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.981">
            <gDNA_intron_boundary i_start="90363" i_stop="89942" i_length="422"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89941" e_stop="89812" e_length="130"/>
          </exon>
          <intron i_serial="7" don_prob="0.941" acc_prob="0.996">
            <gDNA_intron_boundary i_start="89811" i_stop="89661" i_length="151"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89660" e_stop="89539" e_length="122"/>
          </exon>
          <intron i_serial="8" don_prob="0.948" acc_prob="0.000">
            <gDNA_intron_boundary i_start="89538" i_stop="89458" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="0.996">
            <gDNA_exon_boundary e_start="89457" e_stop="89219" e_length="239"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92753" stop="92589"/>
              <exon start="91309" stop="91165"/>
              <exon start="91034" stop="90924"/>
              <exon start="90839" stop="90748"/>
              <exon start="90656" stop="90562"/>
              <exon start="90477" stop="90364"/>
              <exon start="89941" stop="89812"/>
              <exon start="89660" stop="89539"/>
              <exon start="89457" stop="89219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCACGCCTTTGAAATATTTCCTTTTGCCTCCATTCTTCCATTCTCAGTGAGCATCAAGAAAATTAGCAATGGAGCAGCAGCACAGGAATCAGAAGTCGATGCAAGACCAAAATGATGAAATCGAGGATGTTCAACACGGCCCTTTTCCAGTTGAACAACTTCAG : GCATCAGGGATTGCAGCTCTAGATGTAAAAAAACTCAAGGATGCTGGTCTATGTACAGTTGAATCTGTTGTTTATGCTCCAAGAAAGGAACTTCTGCAGATAAAAGGAATTAGTGAAGCTAAAGTTGACAAGATTATTGAGGCAG : CTTCAAAATTAGTGCCTTTGGGATTCACTAGTGCCAGCCAACTCCATGCACAGAGGCTTGAAATCATACAGATAACTTCTGGATCGAAAGAACTTGACAAGATATTAGAAG : GAGGAATCGAAACTGGATCTATTACTGAAATTTACGGAGAGTTCCGATGTGGAAAGACTCAGCTGTGTCACACACTATGCGTGACTTGTCAA : CTTCCATTAGATCAGGGAGGTGGTGAAGGGAAAGCAATGTACATTGATGCTGAGGGTACTTTCAGACCACAAAGACTTTTACAAATTGCAGACAG : GTATGGATTGAATGGTCCTGATGTCCTGGAGAATGTAGCCTATGCTCGAGCTTATAATACCGATCATCAATCAAGACTTTTGCTTGAGGCAGCCTCAATGATGGTGGAGACCAG : GTTTGCTCTCATGATTGTGGACAGTGCTACTGCCCTTTATAGAACTGACTTCTCTGGGAGAGGAGAGTTGTCTGCCAGGCAGATGCATCTTGCAAAGTTTCTGAGAAGCCTTCAGAAGTTAGCAGATGAG : TTTGGTGTTGCTGTTGTTATTACGAACCAAGTTGTTGCTCAAGTGGATGGTTCTGCTGTATTTGCTGGGCCTCAAATAAAACCCATTGGTGGCAACATCATGGCACATGCTTCTACGACGAG : ACTAGCTCTGAGGAAGGGTAGGGCCGAGGAGCGGATTTGTAAAGTAGTCAGTTCGCCATGCTTAGCTGAAGCAGAAGCAAGATTTCAAATTTCTGTTGAAGGAGTCACTGATGTAAAGGACTAAATGTGTGATCAGCACATTGTTTACTACTAGTACTATTTTTTGTTTCCTACTTGGTGTACGATTTTGTCATCGTTTTGAAGGTTAGTTAACCATAAAAAGAAGTATGCTATATGAA</gDNA_template>
            <first_frame> L  T  P  L  K  Y  F  L  L  P  P  F  F  H  S  Q  *  A  S  R  K  L  A  M  E  Q  Q  H  R  N  Q  K  S  M  Q  D  Q  N  D  E  I  E  D  V  Q  H  G  P  F  P  V  E  Q  L  Q  :  A  S  G  I  A  A  L  D  V  K  K  L  K  D  A  G  L  C  T  V  E  S  V  V  Y  A  P  R  K  E  L  L  Q  I  K  G  I  S  E  A  K  V  D  K  I  I  E  A   : A  S  K  L  V  P  L  G  F  T  S  A  S  Q  L  H  A  Q  R  L  E  I  I  Q  I  T  S  G  S  K  E  L  D  K  I  L  E   : G  G  I  E  T  G  S  I  T  E  I  Y  G  E  F  R  C  G  K  T  Q  L  C  H  T  L  C  V  T  C  Q  :  L  P  L  D  Q  G  G  G  E  G  K  A  M  Y  I  D  A  E  G  T  F  R  P  Q  R  L  L  Q  I  A  D  R :   Y  G  L  N  G  P  D  V  L  E  N  V  A  Y  A  R  A  Y  N  T  D  H  Q  S  R  L  L  L  E  A  A  S  M  M  V  E  T  R :   F  A  L  M  I  V  D  S  A  T  A  L  Y  R  T  D  F  S  G  R  G  E  L  S  A  R  Q  M  H  L  A  K  F  L  R  S  L  Q  K  L  A  D  E  :  F  G  V  A  V  V  I  T  N  Q  V  V  A  Q  V  D  G  S  A  V  F  A  G  P  Q  I  K  P  I  G  G  N  I  M  A  H  A  S  T  T  R :   L  A  L  R  K  G  R  A  E  E  R  I  C  K  V  V  S  S  P  C  L  A  E  A  E  A  R  F  Q  I  S  V  E  G  V  T  D  V  K  D  *  M  C  D  Q  H  I  V  Y  Y  *  Y  Y  F  L  F  P  T  W  C  T  I  L  S  S  F  *  R  L  V  N  H  K  K  K  Y  A  I  *  </first_frame>
            <second_frame>  S  R  L  *  N  I  S  F  C  L  H  S  S  I  L  S  E  H  Q  E  N  *  Q  W  S  S  S  T  G  I  R  S  R  C  K  T  K  M  M  K  S  R  M  F  N  T  A  L  F  Q  L  N  N  F  R :   H  Q  G  L  Q  L  *  M  *  K  N  S  R  M  L  V  Y  V  Q  L  N  L  L  F  M  L  Q  E  R  N  F  C  R  *  K  E  L  V  K  L  K  L  T  R  L  L  R  Q  :  L  Q  N  *  C  L  W  D  S  L  V  P  A  N  S  M  H  R  G  L  K  S  Y  R  *  L  L  D  R  K  N  L  T  R  Y  *  K  :  E  E  S  K  L  D  L  L  L  K  F  T  E  S  S  D  V  E  R  L  S  C  V  T  H  Y  A  *  L  V  N :   F  H  *  I  R  E  V  V  K  G  K  Q  C  T  L  M  L  R  V  L  S  D  H  K  D  F  Y  K  L  Q  T   : G  M  D  *  M  V  L  M  S  W  R  M  *  P  M  L  E  L  I  I  P  I  I  N  Q  D  F  C  L  R  Q  P  Q  *  W  W  R  P   : G  L  L  S  *  L  W  T  V  L  L  P  F  I  E  L  T  S  L  G  E  E  S  C  L  P  G  R  C  I  L  Q  S  F  *  E  A  F  R  S  *  Q  M  S :   L  V  L  L  L  L  L  R  T  K  L  L  L  K  W  M  V  L  L  Y  L  L  G  L  K  *  N  P  L  V  A  T  S  W  H  M  L  L  R  R   : D  *  L  *  G  R  V  G  P  R  S  G  F  V  K  *  S  V  R  H  A  *  L  K  Q  K  Q  D  F  K  F  L  L  K  E  S  L  M  *  R  T  K  C  V  I  S  T  L  F  T  T  S  T  I  F  C  F  L  L  G  V  R  F  C  H  R  F  E  G  *  L  T  I  K  R  S  M  L  Y  E </second_frame>
            <third_frame>   H  A  F  E  I  F  P  F  A  S  I  L  P  F  S  V  S  I  K  K  I  S  N  G  A  A  A  Q  E  S  E  V  D  A  R  P  K  *  *  N  R  G  C  S  T  R  P  F  S  S  *  T  T  S   : G  I  R  D  C  S  S  R  C  K  K  T  Q  G  C  W  S  M  Y  S  *  I  C  C  L  C  S  K  K  G  T  S  A  D  K  R  N  *  *  S  *  S  *  Q  D  Y  *  G  S :   F  K  I  S  A  F  G  I  H  *  C  Q  P  T  P  C  T  E  A  *  N  H  T  D  N  F  W  I  E  R  T  *  Q  D  I  R  R :   R  N  R  N  W  I  Y  Y  *  N  L  R  R  V  P  M  W  K  D  S  A  V  S  H  T  M  R  D  L  S   : T  S  I  R  S  G  R  W  *  R  E  S  N  V  H  *  C  *  G  Y  F  Q  T  T  K  T  F  T  N  C  R  Q  :  V  W  I  E  W  S  *  C  P  G  E  C  S  L  C  S  S  L  *  Y  R  S  S  I  K  T  F  A  *  G  S  L  N  D  G  G  D  Q  :  V  C  S  H  D  C  G  Q  C  Y  C  P  L  *  N  *  L  L  W  E  R  R  V  V  C  Q  A  D  A  S  C  K  V  S  E  K  P  S  E  V  S  R  *   : V  W  C  C  C  C  Y  Y  E  P  S  C  C  S  S  G  W  F  C  C  I  C  W  A  S  N  K  T  H  W  W  Q  H  H  G  T  C  F  Y  D  E  :  T  S  S  E  E  G  *  G  R  G  A  D  L  *  S  S  Q  F  A  M  L  S  *  S  R  S  K  I  S  N  F  C  *  R  S  H  *  C  K  G  L  N  V  *  S  A  H  C  L  L  L  V  L  F  F  V  S  Y  L  V  Y  D  F  V  I  V  L  K  V  S  *  P  *  K  E  V  C  Y  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92702" stop="92589"/>
                    <exon start="91309" stop="91165"/>
                    <exon start="91034" stop="90924"/>
                    <exon start="90839" stop="90748"/>
                    <exon start="90656" stop="90562"/>
                    <exon start="90477" stop="90364"/>
                    <exon start="89941" stop="89812"/>
                    <exon start="89660" stop="89539"/>
                    <exon start="89457" stop="89334"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASRKLAMEQQHRNQKSMQDQNDEIEDVQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVVYAPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRLEIIQITSGSKELDKILEGGIETGSITEIYGEFRCGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGPDVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAVFAGPQIKPIGGNIMAHASTTRLALRKGRAEERICKVVSSPCLAEAEARFQISVEGVTDVKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="103180" PGL_stop="103879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103180" e_stop="103706"/>
            <exon e_start="103796" e_stop="103879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.949"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="103180" e_stop="103706" e_length="527"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="103707" i_stop="103795" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.917">
            <gDNA_exon_boundary e_start="103796" e_stop="103879" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103180" stop="103706"/>
              <exon start="103796" stop="103879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603521" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCAATGGCAATGATGGTATTCAATACAAATGTAACAAGATCAATGCAGTGCAACATTGAATGGAATGGTGATGTTGGATTTGAAGTGTTAGAAGTGGTATACAAGCATACTGTGAACTTGGGTCAACAAAAATGTAATTGCAGATCATGGGAATTAAAAGGTATCCCATGTGCACATGGTATAGCAACAATCAACCACTTGAACATAGATGCATCACAAGCAATATCTAGTTGGTATAGAAAAGACACATATATGAAGACATATTCTTATTTCACTCAACCAGTCCCAAACATGGAAATGTGGCTTGAAAGTAGAAACCTAATGGTTGAACCACCTGAGGCAAGATAAATGCCTGGTAGGCCACCAAAGAACAGAAGAAGAGAAATTGGTGAAGTGAGAAAAGTTGGAAAGTTGCCAAGAATGGGGACAGTAATGACATGTTCACTTTGTAAAGGACCAAATCATAACAAGAGAAATTGTCCAAAAAATCCTAAACCTAAGTCTACACCAACACCCACTCAAGAG : TCCACCATTGGAAAAAAGAGGGGTAGAGGTCATTATGAAAGAACAAGCACCAGTAAGACTGGTACAAGAAGAGGTGCAGGAAGT</gDNA_template>
            <first_frame> L  Q  W  Q  *  W  Y  S  I  Q  M  *  Q  D  Q  C  S  A  T  L  N  G  M  V  M  L  D  L  K  C  *  K  W  Y  T  S  I  L  *  T  W  V  N  K  N  V  I  A  D  H  G  N  *  K  V  S  H  V  H  M  V  *  Q  Q  S  T  T  *  T  *  M  H  H  K  Q  Y  L  V  G  I  E  K  T  H  I  *  R  H  I  L  I  S  L  N  Q  S  Q  T  W  K  C  G  L  K  V  E  T  *  W  L  N  H  L  R  Q  D  K  C  L  V  G  H  Q  R  T  E  E  E  K  L  V  K  *  E  K  L  E  S  C  Q  E  W  G  Q  *  *  H  V  H  F  V  K  D  Q  I  I  T  R  E  I  V  Q  K  I  L  N  L  S  L  H  Q  H  P  L  K  S :   P  P  L  E  K  R  G  V  E  V  I  M  K  E  Q  A  P  V  R  L  V  Q  E  E  V  Q  E   </first_frame>
            <second_frame>  S  N  G  N  D  G  I  Q  Y  K  C  N  K  I  N  A  V  Q  H  *  M  E  W  *  C  W  I  *  S  V  R  S  G  I  Q  A  Y  C  E  L  G  S  T  K  M  *  L  Q  I  M  G  I  K  R  Y  P  M  C  T  W  Y  S  N  N  Q  P  L  E  H  R  C  I  T  S  N  I  *  L  V  *  K  R  H  I  Y  E  D  I  F  L  F  H  S  T  S  P  K  H  G  N  V  A  *  K  *  K  P  N  G  *  T  T  *  G  K  I  N  A  W  *  A  T  K  E  Q  K  K  R  N  W  *  S  E  K  S  W  K  V  A  K  N  G  D  S  N  D  M  F  T  L  *  R  T  K  S  *  Q  E  K  L  S  K  K  S  *  T  *  V  Y  T  N  T  H  S  R   : V  H  H  W  K  K  E  G  *  R  S  L  *  K  N  K  H  Q  *  D  W  Y  K  K  R  C  R  K  </second_frame>
            <third_frame>   P  M  A  M  M  V  F  N  T  N  V  T  R  S  M  Q  C  N  I  E  W  N  G  D  V  G  F  E  V  L  E  V  V  Y  K  H  T  V  N  L  G  Q  Q  K  C  N  C  R  S  W  E  L  K  G  I  P  C  A  H  G  I  A  T  I  N  H  L  N  I  D  A  S  Q  A  I  S  S  W  Y  R  K  D  T  Y  M  K  T  Y  S  Y  F  T  Q  P  V  P  N  M  E  M  W  L  E  S  R  N  L  M  V  E  P  P  E  A  R  *  M  P  G  R  P  P  K  N  R  R  R  E  I  G  E  V  R  K  V  G  K  L  P  R  M  G  T  V  M  T  C  S  L  C  K  G  P  N  H  N  K  R  N  C  P  K  N  P  K  P  K  S  T  P  T  P  T  Q  E  :  S  T  I  G  K  K  R  G  R  G  H  Y  E  R  T  S  T  S  K  T  G  T  R  R  G  A  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103182" stop="103529"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMAMMVFNTNVTRSMQCNIEWNGDVGFEVLEVVYKHTVNLGQQKCNCRSWELKGIPCAHGIATINHLNIDASQAISSWYRKDTYMKTYSYFTQPVPNMEMWLESRNLMVEPPEAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103530" stop="103706"/>
                    <exon start="103796" stop="103879"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MPGRPPKNRRREIGEVRKVGKLPRMGTVMTCSLCKGPNHNKRNCPKNPKPKSTPTPTQESTIGKKRGRGHYERTSTSKTGTRRGAGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="123615" PGL_stop="121705"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123615" e_stop="121705"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="123615" e_stop="121705" e_length="1911"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123615" stop="122510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122513" stop="121705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604002" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGGATTGCTCGACATCGTACAGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCAGGAAAAGCTGCTGATTATTCAAATCTGAAAGTTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGATCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTTCTCTTCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCTAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGATATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGAAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCTTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTAGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGTCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> K  G  L  L  D  I  V  Q  S  E  I  H  H  S  R  T  V  *  L  S  G  *  I  K  H  F  W  R  E  Q  G  A  C  S  L  M  L  G  *  I  E  D  S  G  Q  K  R  L  V  Q  L  A  T  *  L  T  A  D  H  I  Q  A  Y  S  A  R  H  L  W  R  C  G  Q  E  K  L  L  I  I  Q  I  *  K  F  L  V  V  R  L  T  I  T  S  V  K  V  S  *  N  Q  D  L  K  R  E  Y  L  W  A  T  E  M  E  *  K  V  S  E  S  G  L  Q  Q  K  R  G  L  L  *  A  G  T  L  S  L  M  K  V  L  F  L  E  P  L  *  S  L  Q  L  R  Q  K  L  G  V  L  T  N  R  W  S  F  *  S  F  R  T  R  E  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *  L  S  R  M  V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  D  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  E  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  *  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  V  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </first_frame>
            <second_frame>  R  D  C  S  T  S  Y  S  Q  K  Y  T  T  A  E  R  C  S  *  A  D  E  S  N  T  S  G  E  S  K  V  H  A  L  *  C  W  A  R  *  K  I  L  G  R  S  G  *  Y  S  L  L  L  D  *  P  R  T  T  Y  R  H  T  V  Q  D  T  Y  G  D  V  V  R  K  S  C  *  L  F  K  S  E  S  F  W  L  Y  G  L  L  S  R  Q  *  R  *  V  R  T  K  I  *  K  G  S  I  C  G  L  R  R  W  S  E  R  F  Q  N  L  V  S  S  R  K  E  G  Y  Y  E  Q  E  R  C  L  *  *  K  F  S  S  *  N  H  C  E  A  Y  N  Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  S  A  G  W  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  I  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  K  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  L  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  S  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </second_frame>
            <third_frame>   G  I  A  R  H  R  T  V  R  N  T  P  Q  Q  N  G  V  A  E  R  M  N  Q  T  L  L  E  R  A  R  C  M  L  S  N  A  G  L  D  R  R  F  W  A  E  A  V  S  T  A  C  Y  L  I  N  R  G  P  H  T  G  I  Q  C  K  T  P  M  E  M  W  S  G  K  A  A  D  Y  S  N  L  K  V  F  G  C  T  A  Y  Y  H  V  S  E  G  K  L  E  P  R  S  K  K  G  V  F  V  G  Y  G  D  G  V  K  G  F  R  I  W  S  P  A  E  K  R  V  I  M  S  R  N  V  V  F  D  E  S  S  L  L  R  T  I  V  K  P  T  T  T  S  E  T  G  S  L  D  K  Q  V  E  F  L  V  I  Q  N  E  R  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T  Q  P  D  G  F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  L  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  S  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123613" stop="121757"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1854</number_coding_nucleotides>
                  <number_encoded_amino_acids>618</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKVFGCTAYYHVSEGKLEPRSKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESSLLRTIVKPTTTSETGSLDKQVEFLVIQNERDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASALGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="123956" PGL_stop="123658"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123956" e_stop="123658"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="123956" e_stop="123658" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123956" stop="123658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAGAGTTTTGTGAACATTGTATTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCAATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGGGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAAAAGTTCAAGGAGTGGAAATTTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGC</gDNA_template>
            <first_frame> P  R  V  L  *  T  L  Y  F  W  K  T  T  S  Q  Q  V  S  K  G  H  S  *  N  K  R  H  T  *  L  Y  Q  F  *  L  L  G  S  M  P  C  *  V  F  G  R  L  Q  I  F  C  V  H  Y  *  *  L  L  K  D  D  L  G  V  H  D  E  A  *  K  *  S  L  P  K  V  Q  G  V  E  I  F  D  G  K  S  N  R  E  E  D  Q  E  V  A  N  *  *  W   </first_frame>
            <second_frame>  L  E  F  C  E  H  C  I  F  G  K  L  H  R  N  K  F  P  K  A  I  H  R  T  K  G  T  L  D  Y  I  N  S  D  C  W  G  P  C  R  V  E  S  L  G  G  C  R  F  F  V  S  I  I  D  D  Y  S  R  M  T  W  V  Y  M  M  K  H  K  S  E  A  F  Q  K  F  K  E  W  K  F  L  M  E  N  Q  T  G  K  K  I  K  R  L  R  T  D  N  G  </second_frame>
            <third_frame>   *  S  F  V  N  I  V  F  L  E  N  Y  I  A  T  S  F  Q  R  P  F  I  E  Q  K  A  H  L  I  I  S  I  L  I  A  G  V  H  A  V  L  S  L  W  E  A  A  D  F  L  C  P  L  L  M  T  T  Q  G  *  L  G  C  T  *  *  S  I  K  V  K  P  S  K  S  S  R  S  G  N  F  *  W  K  I  K  Q  G  R  R  S  R  G  C  E  L  I  M  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123955" stop="123659"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEFCEHCIFGKLHRNKFPKAIHRTKGTLDYINSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKFLMENQTGKKIKRLRTDNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="129319" PGL_stop="130070"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129319" e_stop="130070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="129319" e_stop="130070" e_length="752"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129319" stop="130070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAATTCGAGACAAATTAAACGATCTATTTATATTATTCCTTCAAATGCACTAAACACTTTTTTTTTTTTTATAATTTTCTTCCTCTAATGCCTTCATTTGTAGTCCTTATATGAATCTACCGCGCACAAGTGAAAATTAGATAATGAATAGTATTCATTACAATTATTCAGTATATATCGATTCTTTGTTATAATATACGTACATACGTACGTAAATACGTCTTAGAAAATTTTTTCGTAGAATGTTCACTACTTGTACAAGATCATGATTAAGAACAGACTAAATTGAGATAACTAAGATGAAGACGATCGTAATTTGACATGGAATTAAAAGGAAGAAAGATTAATTTGACATGATGAAGATGATGACGATGACGAAGAAGATGATTAGCTGGAAAGGCTAAAACGAACTTGAACATCGAGATCCTTCAACCAAGTTTGGCCTTGTAAGAAGGATTCAACTGTGTAATTCAACGCGATATCCTTACTTATTGTGCCTTGATATCCAGCCCATTTAACTCTGGAGCCCGTTCCAGATCCAGCTCCTCTGTTGCTATATTCCCCGAAATACAGAGTGCTTAATGCATAGTCCCCGTTTGTAGCCTCCCATCCTTCTGGATCAATTACGTCAGTAATGTCCGTTTCCATTACAATCGTCCTAGAGTATTCCTTCATTGGTCGACCCAAGTAACTCTTGAACTTTGATTTTTCAGGTTCAAGTGTATCGTCTGCGAAAATGCTACAACTTTG</gDNA_template>
            <first_frame> E  N  S  R  Q  I  K  R  S  I  Y  I  I  P  S  N  A  L  N  T  F  F  F  F  I  I  F  F  L  *  C  L  H  L  *  S  L  Y  E  S  T  A  H  K  *  K  L  D  N  E  *  Y  S  L  Q  L  F  S  I  Y  R  F  F  V  I  I  Y  V  H  T  Y  V  N  T  S  *  K  I  F  S  *  N  V  H  Y  L  Y  K  I  M  I  K  N  R  L  N  *  D  N  *  D  E  D  D  R  N  L  T  W  N  *  K  E  E  R  L  I  *  H  D  E  D  D  D  D  D  E  E  D  D  *  L  E  R  L  K  R  T  *  T  S  R  S  F  N  Q  V  W  P  C  K  K  D  S  T  V  *  F  N  A  I  S  L  L  I  V  P  *  Y  P  A  H  L  T  L  E  P  V  P  D  P  A  P  L  L  L  Y  S  P  K  Y  R  V  L  N  A  *  S  P  F  V  A  S  H  P  S  G  S  I  T  S  V  M  S  V  S  I  T  I  V  L  E  Y  S  F  I  G  R  P  K  *  L  L  N  F  D  F  S  G  S  S  V  S  S  A  K  M  L  Q  L   </first_frame>
            <second_frame>  K  I  R  D  K  L  N  D  L  F  I  L  F  L  Q  M  H  *  T  L  F  F  F  L  *  F  S  S  S  N  A  F  I  C  S  P  Y  M  N  L  P  R  T  S  E  N  *  I  M  N  S  I  H  Y  N  Y  S  V  Y  I  D  S  L  L  *  Y  T  Y  I  R  T  *  I  R  L  R  K  F  F  R  R  M  F  T  T  C  T  R  S  *  L  R  T  D  *  I  E  I  T  K  M  K  T  I  V  I  *  H  G  I  K  R  K  K  D  *  F  D  M  M  K  M  M  T  M  T  K  K  M  I  S  W  K  G  *  N  E  L  E  H  R  D  P  S  T  K  F  G  L  V  R  R  I  Q  L  C  N  S  T  R  Y  P  Y  L  L  C  L  D  I  Q  P  I  *  L  W  S  P  F  Q  I  Q  L  L  C  C  Y  I  P  R  N  T  E  C  L  M  H  S  P  R  L  *  P  P  I  L  L  D  Q  L  R  Q  *  C  P  F  P  L  Q  S  S  *  S  I  P  S  L  V  D  P  S  N  S  *  T  L  I  F  Q  V  Q  V  Y  R  L  R  K  C  Y  N  F  </second_frame>
            <third_frame>   K  F  E  T  N  *  T  I  Y  L  Y  Y  S  F  K  C  T  K  H  F  F  F  F  Y  N  F  L  P  L  M  P  S  F  V  V  L  I  *  I  Y  R  A  Q  V  K  I  R  *  *  I  V  F  I  T  I  I  Q  Y  I  S  I  L  C  Y  N  I  R  T  Y  V  R  K  Y  V  L  E  N  F  F  V  E  C  S  L  L  V  Q  D  H  D  *  E  Q  T  K  L  R  *  L  R  *  R  R  S  *  F  D  M  E  L  K  G  R  K  I  N  L  T  *  *  R  *  *  R  *  R  R  R  *  L  A  G  K  A  K  T  N  L  N  I  E  I  L  Q  P  S  L  A  L  *  E  G  F  N  C  V  I  Q  R  D  I  L  T  Y  C  A  L  I  S  S  P  F  N  S  G  A  R  S  R  S  S  S  S  V  A  I  F  P  E  I  Q  S  A  *  C  I  V  P  V  C  S  L  P  S  F  W  I  N  Y  V  S  N  V  R  F  H  Y  N  R  P  R  V  F  L  H  W  S  T  Q  V  T  L  E  L  *  F  F  R  F  K  C  I  V  C  E  N  A  T  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00SLm0024O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="131099" PGL_stop="129983"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131099" e_stop="130924"/>
            <exon e_start="130834" e_stop="130680"/>
            <exon e_start="130405" e_stop="129983"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.645" e_score="0.994"/>
          <exon-intron don_prob="0.968" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="131099" e_stop="130924" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.645">
            <gDNA_intron_boundary i_start="130923" i_stop="130835" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="130834" e_stop="130680" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.999">
            <gDNA_intron_boundary i_start="130679" i_stop="130406" i_length="274"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="130405" e_stop="129983" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131099" stop="130924"/>
              <exon start="130834" stop="130680"/>
              <exon start="130405" stop="129983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582728" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAACACGATTAGGTGTTCCTGCATGGATTAAACAAGGTGATAGAAGAATGTTGGATGAAGAAGAAGGCAAAGACATGAAGTCTTTTATAAACATGACAGTTGCAAAAGATGGTAGTGGTAATTTTAGTTCCATAAATGAAGCCTTAAAGGCAGTTCCACAAAGCTTTGAAGGAAG : GTTCTTTATTTATATTAAAGAAGGAGTTTATGAAGAAAATGTAGTTGTGTCACAAGTCAATCTTACATTTGTTGGAGATGGATCCCAAAAGAGTATTATCTCCGGCAGCAAAAACATTGTGGATGACCTCACAACATACCAAACCGCAACAGTTG : CTATTTCAGGAGATGGATTTTTTGCATATAAGATGGGATTCCGTAACACAGCGGGTCCTGAAAAATTAGAAGCAGTGGCTCTACGAGTCCAAGCTGATCATGCAATATTTATGAATTGTCGTATGGAGGGTCACCAAAGTGTGATCTATGCTCAGGCCTATCGACAATTTTATCGTGGATGTTACATCACAGGCACAGTTGACATCATATCAGGAAACGCGGCTGCTGTGTTCCAAAACTGTCAAATTTACCTAAGGAAACCAATGAATGACCAAAAGAACGTCATTACCGCACAAGGAAGGTTGAGCAAGCGCCAAACTACAGGGACTGTCTTGCAAAGTTGTAGCATTTTCGCAGACGATACACTTGAACCTGAAAAATCAAAGTTCAAGAGTTACTTGGGTCGACCAATGAAGGAATACT</gDNA_template>
            <first_frame> T  T  R  L  G  V  P  A  W  I  K  Q  G  D  R  R  M  L  D  E  E  E  G  K  D  M  K  S  F  I  N  M  T  V  A  K  D  G  S  G  N  F  S  S  I  N  E  A  L  K  A  V  P  Q  S  F  E  G  R :   F  F  I  Y  I  K  E  G  V  Y  E  E  N  V  V  V  S  Q  V  N  L  T  F  V  G  D  G  S  Q  K  S  I  I  S  G  S  K  N  I  V  D  D  L  T  T  Y  Q  T  A  T  V   : A  I  S  G  D  G  F  F  A  Y  K  M  G  F  R  N  T  A  G  P  E  K  L  E  A  V  A  L  R  V  Q  A  D  H  A  I  F  M  N  C  R  M  E  G  H  Q  S  V  I  Y  A  Q  A  Y  R  Q  F  Y  R  G  C  Y  I  T  G  T  V  D  I  I  S  G  N  A  A  A  V  F  Q  N  C  Q  I  Y  L  R  K  P  M  N  D  Q  K  N  V  I  T  A  Q  G  R  L  S  K  R  Q  T  T  G  T  V  L  Q  S  C  S  I  F  A  D  D  T  L  E  P  E  K  S  K  F  K  S  Y  L  G  R  P  M  K  E  Y  </first_frame>
            <second_frame>  Q  H  D  *  V  F  L  H  G  L  N  K  V  I  E  E  C  W  M  K  K  K  A  K  T  *  S  L  L  *  T  *  Q  L  Q  K  M  V  V  V  I  L  V  P  *  M  K  P  *  R  Q  F  H  K  A  L  K  E   : G  S  L  F  I  L  K  K  E  F  M  K  K  M  *  L  C  H  K  S  I  L  H  L  L  E  M  D  P  K  R  V  L  S  P  A  A  K  T  L  W  M  T  S  Q  H  T  K  P  Q  Q  L  :  L  F  Q  E  M  D  F  L  H  I  R  W  D  S  V  T  Q  R  V  L  K  N  *  K  Q  W  L  Y  E  S  K  L  I  M  Q  Y  L  *  I  V  V  W  R  V  T  K  V  *  S  M  L  R  P  I  D  N  F  I  V  D  V  T  S  Q  A  Q  L  T  S  Y  Q  E  T  R  L  L  C  S  K  T  V  K  F  T  *  G  N  Q  *  M  T  K  R  T  S  L  P  H  K  E  G  *  A  S  A  K  L  Q  G  L  S  C  K  V  V  A  F  S  Q  T  I  H  L  N  L  K  N  Q  S  S  R  V  T  W  V  D  Q  *  R  N  T </second_frame>
            <third_frame>   N  T  I  R  C  S  C  M  D  *  T  R  *  *  K  N  V  G  *  R  R  R  Q  R  H  E  V  F  Y  K  H  D  S  C  K  R  W  *  W  *  F  *  F  H  K  *  S  L  K  G  S  S  T  K  L  *  R  K  :  V  L  Y  L  Y  *  R  R  S  L  *  R  K  C  S  C  V  T  S  Q  S  Y  I  C  W  R  W  I  P  K  E  Y  Y  L  R  Q  Q  K  H  C  G  *  P  H  N  I  P  N  R  N  S  C :   Y  F  R  R  W  I  F  C  I  *  D  G  I  P  *  H  S  G  S  *  K  I  R  S  S  G  S  T  S  P  S  *  S  C  N  I  Y  E  L  S  Y  G  G  S  P  K  C  D  L  C  S  G  L  S  T  I  L  S  W  M  L  H  H  R  H  S  *  H  H  I  R  K  R  G  C  C  V  P  K  L  S  N  L  P  K  E  T  N  E  *  P  K  E  R  H  Y  R  T  R  K  V  E  Q  A  P  N  Y  R  D  C  L  A  K  L  *  H  F  R  R  R  Y  T  *  T  *  K  I  K  V  Q  E  L  L  G  S  T  N  E  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131099" stop="130924"/>
                    <exon start="130834" stop="130680"/>
                    <exon start="130405" stop="129984"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTRLGVPAWIKQGDRRMLDEEEGKDMKSFINMTVAKDGSGNFSSINEALKAVPQSFEGRFFIYIKEGVYEENVVVSQVNLTFVGDGSQKSIISGSKNIVDDLTTYQTATVAISGDGFFAYKMGFRNTAGPEKLEAVALRVQADHAIFMNCRMEGHQSVIYAQAYRQFYRGCYITGTVDIISGNAAAVFQNCQIYLRKPMNDQKNVITAQGRLSKRQTTGTVLQSCSIFADDTLEPEKSKFKSYLGRPMKEY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="131625" PGL_stop="131162"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131625" e_stop="131162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="131625" e_stop="131162" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131625" stop="131162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594640" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCCCCCTCACCACAAGGTGAAGGAGCTATGGGAGCAATATGCGCGGGAACAGATTTCAGTCAAAGTTGTGGGGACATTCTATCAAAAGTTGTACAAGCAAATGCCTCTGGTGCTCAACCTACAGATCTTCTCAAGGCAACCGTATCTGCAGCTATCGATGAGATTGCTGCCGGTATTGTAGAACTAGACAAAATCAACAAGGATATCCCAGAGAAGGTCGTTGCTCATGACGATTGTATGGCCCTCCTTGGTTATGCCAAAAAAGACTTGAACGCTTCGATTTACTTGCTTGAAGGTGGCGTTAATGATGTCGCCACAACAACCGCTGAACTTAATAACAAGTTAAGTGCAGCTTTGACATTCCAAAGCATGTGTGTGGATGGATACCCTGAAGCAGACCAGTCCACGGTGCAAAGCGCCTTGAAGAAAACAGAGGAACACACCACCAATTCTCTTGTTGTTG</gDNA_template>
            <first_frame> S  P  L  T  T  R  *  R  S  Y  G  S  N  M  R  G  N  R  F  Q  S  K  L  W  G  H  S  I  K  S  C  T  S  K  C  L  W  C  S  T  Y  R  S  S  Q  G  N  R  I  C  S  Y  R  *  D  C  C  R  Y  C  R  T  R  Q  N  Q  Q  G  Y  P  R  E  G  R  C  S  *  R  L  Y  G  P  P  W  L  C  Q  K  R  L  E  R  F  D  L  L  A  *  R  W  R  *  *  C  R  H  N  N  R  *  T  *  *  Q  V  K  C  S  F  D  I  P  K  H  V  C  G  W  I  P  *  S  R  P  V  H  G  A  K  R  L  E  E  N  R  G  T  H  H  Q  F  S  C  C   </first_frame>
            <second_frame>  A  P  S  P  Q  G  E  G  A  M  G  A  I  C  A  G  T  D  F  S  Q  S  C  G  D  I  L  S  K  V  V  Q  A  N  A  S  G  A  Q  P  T  D  L  L  K  A  T  V  S  A  A  I  D  E  I  A  A  G  I  V  E  L  D  K  I  N  K  D  I  P  E  K  V  V  A  H  D  D  C  M  A  L  L  G  Y  A  K  K  D  L  N  A  S  I  Y  L  L  E  G  G  V  N  D  V  A  T  T  T  A  E  L  N  N  K  L  S  A  A  L  T  F  Q  S  M  C  V  D  G  Y  P  E  A  D  Q  S  T  V  Q  S  A  L  K  K  T  E  E  H  T  T  N  S  L  V  V  </second_frame>
            <third_frame>   P  P  H  H  K  V  K  E  L  W  E  Q  Y  A  R  E  Q  I  S  V  K  V  V  G  T  F  Y  Q  K  L  Y  K  Q  M  P  L  V  L  N  L  Q  I  F  S  R  Q  P  Y  L  Q  L  S  M  R  L  L  P  V  L  *  N  *  T  K  S  T  R  I  S  Q  R  R  S  L  L  M  T  I  V  W  P  S  L  V  M  P  K  K  T  *  T  L  R  F  T  C  L  K  V  A  L  M  M  S  P  Q  Q  P  L  N  L  I  T  S  *  V  Q  L  *  H  S  K  A  C  V  W  M  D  T  L  K  Q  T  S  P  R  C  K  A  P  *  R  K  Q  R  N  T  P  P  I  L  L  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131624" stop="131163"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APSPQGEGAMGAICAGTDFSQSCGDILSKVVQANASGAQPTDLLKATVSAAIDEIAAGIVELDKINKDIPEKVVAHDDCMALLGYAKKDLNASIYLLEGGVNDVATTTAELNNKLSAALTFQSMCVDGYPEADQSTVQSALKKTEEHTTNSLVV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="132208" PGL_stop="131645"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132208" e_stop="131645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="132208" e_stop="131645" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132208" stop="131645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAGTTCCACTAAATAAGAGGGAATAAACAGAGAAATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACACCGACTCCTAAGGCTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAGCACCACCTTCTGATGAAGGTGGTGCTGCTGCCCCTCCACCAAATGTGGACGGAGCTGCAGCACCGGCTGGGGATGCAGCACCTGCTGCACCATCACCCGAGGGTG</gDNA_template>
            <first_frame> S  S  S  T  K  *  E  G  I  N  R  E  I  N  K  T  K  K  K  E  Q  I  N  K  L  S  T  K  *  S  I  I  L  V  *  H  L  C  L  G  L  G  S  R  A  E  I  F  L  I  S  V  S  I  P  D  S  N  P  K  W  R  F  K  I  L  I  K  F  Q  S  G  G  S  S  R  D  S  K  R  *  R  R  G  *  *  L  V  L  Y  C  Y  S  S  F  S  L  L  L  L  L  L  L  S  I  L  L  C  L  K  T  R  A  V  I  P  P  P  L  V  N  L  I  R  T  R  Q  R  L  L  Q  K  K  L  K  H  R  L  L  R  L  M  H  H  L  L  H  L  R  L  L  I  Q  H  H  L  L  M  K  V  V  L  L  P  L  H  Q  M  W  T  E  L  Q  H  R  L  G  M  Q  H  L  L  H  H  H  P  R  V </first_frame>
            <second_frame>  Q  V  P  L  N  K  R  E  *  T  E  K  *  I  K  Q  K  K  K  N  K  *  I  N  *  A  P  N  K  A  S  S  W  C  N  I  S  A  L  V  W  D  P  G  Q  R  S  F  *  S  L  S  L  F  R  T  R  I  Q  N  G  V  S  R  F  *  S  N  F  R  A  E  E  A  R  E  T  A  K  D  E  E  E  D  N  D  W  C  C  I  A  T  P  H  S  H  C  C  C  C  F  C  C  L  F  C  C  V  *  K  Q  E  R  *  F  L  L  R  *  *  I  *  *  E  R  V  N  A  S  S  K  R  N  *  N  T  D  S  *  G  *  C  I  T  S  S  T  *  G  C  *  Y  S  T  T  F  *  *  R  W  C  C  C  P  S  T  K  C  G  R  S  C  S  T  G  W  G  C  S  T  C  C  T  I  T  R  G   </second_frame>
            <third_frame>   K  F  H  *  I  R  G  N  K  Q  R  N  K  *  N  K  K  K  R  T  N  K  *  T  K  H  Q  I  K  H  H  L  G  V  T  S  L  P  W  F  G  I  Q  G  R  D  L  F  N  L  C  L  Y  S  G  L  E  S  K  M  A  F  Q  D  F  D  Q  I  S  E  R  R  K  L  E  R  Q  Q  K  M  K  K  R  I  M  I  G  V  V  L  L  L  L  I  L  I  A  V  A  A  S  V  V  Y  F  V  V  F  K  N  K  S  G  D  S  S  S  A  S  K  S  N  K  N  A  S  T  P  P  P  K  E  T  E  T  P  T  P  K  A  D  A  S  P  P  P  P  E  A  A  D  T  A  P  P  S  D  E  G  G  A  A  A  P  P  P  N  V  D  G  A  A  A  P  A  G  D  A  A  P  A  A  P  S  P  E  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00SLm0024O10.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132137" stop="131646"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKHQIKHHLGVTSLPWFGIQGRDLFNLCLYSGLESKMAFQDFDQISERRKLERQQKMKKRIMIGVVLLLLILIAVAASVVYFVVFKNKSGDSSSASKSNKNASTPPPKETETPTPKADASPPPPEAADTAPPSDEGGAAAPPPNVDGAAAPAGDAAPAAPSPEG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 112 chains have been computed
$ 
$ memory statistics:
$ 41968 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 2098 bytes was the average size of a spliced alignment
$ 23496 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1566 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 126 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:25:45
-->
